diamond v0.9.26.127 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.112014s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.152719s] Opening the output file... [0.000427s] Loading query sequences... [202.668s] Masking queries... [134.627s] Building query seed set... [0.75333s] Algorithm: Double-indexed Building query histograms... [8.64954s] Allocating buffers... [0.002779s] Loading reference sequences... [44.0581s] Masking reference... [61.3245s] Building reference histograms... [11.3351s] Allocating buffers... [0.000127s] Initializing temporary storage... [0.016211s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.5543s] Building query index... [8.97894s] Building seed filter... [1.18972s] Searching alignments... [511.443s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.1046s] Building query index... [9.90731s] Building seed filter... [1.19377s] Searching alignments... [453.491s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.6793s] Building query index... [10.187s] Building seed filter... [1.18676s] Searching alignments... [398.917s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.697s] Building query index... [8.96059s] Building seed filter... [1.17602s] Searching alignments... [401.749s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.1826s] Building query index... [8.12581s] Building seed filter... [1.14536s] Searching alignments... [295.542s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 1. Building reference index... [21.8554s] Building query index... [8.93526s] Building seed filter... [1.14941s] Searching alignments... [286.718s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.5809s] Building query index... [9.23288s] Building seed filter... [1.16018s] Searching alignments... [306.609s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.5171s] Building query index... [8.22978s] Building seed filter... [1.16386s] Searching alignments... [278.038s] Deallocating buffers... [0.131229s] Opening temporary output file... [0.001968s] Computing alignments... [1775.94s] Deallocating reference... [0.0799s] Loading reference sequences... [519.453s] Masking reference... [61.5477s] Building reference histograms... [11.142s] Allocating buffers... [0.000132s] Initializing temporary storage... [0.005904s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.5056s] Building query index... [8.97083s] Building seed filter... [1.19971s] Searching alignments... [440.205s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.0297s] Building query index... [9.89529s] Building seed filter... [1.2162s] Searching alignments... [393.331s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.7431s] Building query index... [10.262s] Building seed filter... [1.19854s] Searching alignments... [359.754s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.6501s] Building query index... [9.03839s] Building seed filter... [1.20963s] Searching alignments... [345.822s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.1473s] Building query index... [8.13415s] Building seed filter... [1.13348s] Searching alignments... [264.591s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 1. Building reference index... [22.2309s] Building query index... [8.92248s] Building seed filter... [1.18841s] Searching alignments... [254.207s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.7842s] Building query index... [9.19588s] Building seed filter... [1.16638s] Searching alignments... [257.821s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.4865s] Building query index... [8.09651s] Building seed filter... [1.16501s] Searching alignments... [250.076s] Deallocating buffers... [0.124518s] Opening temporary output file... [0.002577s] Computing alignments... [1582.76s] Deallocating reference... [0.073964s] Loading reference sequences... [521.137s] Masking reference... [61.473s] Building reference histograms... [11.0784s] Allocating buffers... [0.000124s] Initializing temporary storage... [0.004597s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.5135s] Building query index... [8.89029s] Building seed filter... [1.16505s] Searching alignments... [472.962s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 1. Building reference index... [22.0416s] Building query index... [9.99181s] Building seed filter... [1.186s] Searching alignments... [422.242s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.6591s] Building query index... [10.298s] Building seed filter... [1.16808s] Searching alignments... [367.273s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.5418s] Building query index... [8.94296s] Building seed filter... [1.17744s] Searching alignments... [371.433s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.2382s] Building query index... [8.02744s] Building seed filter... [1.15493s] Searching alignments... [275.6s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 1. Building reference index... [21.857s] Building query index... [8.89981s] Building seed filter... [1.12s] Searching alignments... [267.12s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.5477s] Building query index... [9.18182s] Building seed filter... [1.14053s] Searching alignments... [284.225s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.3282s] Building query index... [8.14838s] Building seed filter... [1.15932s] Searching alignments... [257.54s] Deallocating buffers... [0.121403s] Opening temporary output file... [0.001776s] Computing alignments... [1690.01s] Deallocating reference... [0.073928s] Loading reference sequences... [502.831s] Masking reference... [62.3267s] Building reference histograms... [11.5786s] Allocating buffers... [0.000142s] Initializing temporary storage... [0.005736s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.5752s] Building query index... [8.86807s] Building seed filter... [1.19988s] Searching alignments... [503.429s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.2607s] Building query index... [9.90337s] Building seed filter... [1.23046s] Searching alignments... [446.348s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 2. Building reference index... [22.8214s] Building query index... [10.2146s] Building seed filter... [1.20455s] Searching alignments... [382.002s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.6968s] Building query index... [8.9331s] Building seed filter... [1.21038s] Searching alignments... [391.061s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.428s] Building query index... [8.14103s] Building seed filter... [1.17294s] Searching alignments... [287.8s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 1. Building reference index... [22.0089s] Building query index... [9.02121s] Building seed filter... [1.16998s] Searching alignments... [281.176s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.6606s] Building query index... [9.25066s] Building seed filter... [1.15973s] Searching alignments... [301.291s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.4869s] Building query index... [8.09874s] Building seed filter... [1.18702s] Searching alignments... [264.984s] Deallocating buffers... [0.1266s] Opening temporary output file... [0.002893s] Computing alignments... [1779.22s] Deallocating reference... [0.066722s] Loading reference sequences... [476.325s] Masking reference... [61.7996s] Building reference histograms... [11.7167s] Allocating buffers... [0.000131s] Initializing temporary storage... [0.004006s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.6374s] Building query index... [8.89161s] Building seed filter... [1.17757s] Searching alignments... [446.057s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.156s] Building query index... [9.89483s] Building seed filter... [1.21016s] Searching alignments... [408.998s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.8186s] Building query index... [10.2151s] Building seed filter... [1.18815s] Searching alignments... [367.888s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.733s] Building query index... [8.97636s] Building seed filter... [1.23364s] Searching alignments... [354.83s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.3175s] Building query index... [7.99636s] Building seed filter... [1.17355s] Searching alignments... [271.853s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 1. Building reference index... [21.8975s] Building query index... [8.96613s] Building seed filter... [1.19449s] Searching alignments... [262.089s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.4766s] Building query index... [9.18353s] Building seed filter... [1.1707s] Searching alignments... [269.123s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.5992s] Building query index... [8.12393s] Building seed filter... [1.18137s] Searching alignments... [254.745s] Deallocating buffers... [0.126089s] Opening temporary output file... [0.00211s] Computing alignments... [1631.59s] Deallocating reference... [0.061738s] Loading reference sequences... [208.049s] Masking reference... [22.8717s] Building reference histograms... [4.35301s] Allocating buffers... [0.000152s] Initializing temporary storage... [0.004182s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.14378s] Building query index... [8.96858s] Building seed filter... [0.699587s] Searching alignments... [215.555s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.11523s] Building query index... [9.82711s] Building seed filter... [0.711082s] Searching alignments... [190.93s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.34016s] Building query index... [10.2402s] Building seed filter... [0.73183s] Searching alignments... [169.536s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.21565s] Building query index... [8.93721s] Building seed filter... [0.715054s] Searching alignments... [167.767s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 0. Building reference index... [7.02645s] Building query index... [8.04645s] Building seed filter... [0.670181s] Searching alignments... [126.286s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 1. Building reference index... [7.9909s] Building query index... [8.95722s] Building seed filter... [0.690058s] Searching alignments... [120.244s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.28929s] Building query index... [9.13982s] Building seed filter... [0.683699s] Searching alignments... [127.921s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.09445s] Building query index... [8.07016s] Building seed filter... [0.686018s] Searching alignments... [116.61s] Deallocating buffers... [0.050948s] Opening temporary output file... [0.002049s] Computing alignments... [725.928s] Deallocating reference... [0.029838s] Loading reference sequences... [3.9e-05s] Deallocating buffers... [0.035191s] Joining output blocks... [439.808s] Deallocating queries... [0.093024s] Loading query sequences... [49.0708s] Masking queries... [32.1029s] Building query seed set... [7e-06s] Building query histograms... [1.88817s] Allocating buffers... [0.001092s] Loading reference sequences... [47.1417s] Masking reference... [62.9646s] Building reference histograms... [11.8743s] Allocating buffers... [0.000176s] Initializing temporary storage... [0.004824s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.564s] Building query index... [2.22197s] Building seed filter... [0.916391s] Searching alignments... [129.376s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.1996s] Building query index... [2.45939s] Building seed filter... [0.936552s] Searching alignments... [115.074s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.8591s] Building query index... [2.57588s] Building seed filter... [0.919025s] Searching alignments... [99.7114s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.5597s] Building query index... [2.28182s] Building seed filter... [0.940564s] Searching alignments... [101.272s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.178s] Building query index... [1.99276s] Building seed filter... [0.921256s] Searching alignments... [75.2517s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 1. Building reference index... [21.8624s] Building query index... [2.23317s] Building seed filter... [0.920126s] Searching alignments... [73.2046s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.527s] Building query index... [2.3247s] Building seed filter... [0.930479s] Searching alignments... [77.1462s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.5344s] Building query index... [2.02967s] Building seed filter... [0.918165s] Searching alignments... [70.2881s] Deallocating buffers... [0.125539s] Opening temporary output file... [0.001939s] Computing alignments... [451.149s] Deallocating reference... [0.07972s] Loading reference sequences... [556.874s] Masking reference... [61.7899s] Building reference histograms... [11.4948s] Allocating buffers... [0.000172s] Initializing temporary storage... [0.004034s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.5532s] Building query index... [2.20689s] Building seed filter... [0.914548s] Searching alignments... [110.179s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.1591s] Building query index... [2.46746s] Building seed filter... [0.924346s] Searching alignments... [98.1057s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.755s] Building query index... [2.52471s] Building seed filter... [0.942646s] Searching alignments... [90.6494s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.6103s] Building query index... [2.21164s] Building seed filter... [0.921935s] Searching alignments... [86.0049s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.3107s] Building query index... [2.00306s] Building seed filter... [0.922896s] Searching alignments... [67.8225s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 1. Building reference index... [21.8s] Building query index... [2.24506s] Building seed filter... [0.926931s] Searching alignments... [66.3021s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.6215s] Building query index... [2.35313s] Building seed filter... [0.937136s] Searching alignments... [65.619s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.5442s] Building query index... [2.0278s] Building seed filter... [0.916984s] Searching alignments... [63.6508s] Deallocating buffers... [0.116797s] Opening temporary output file... [0.001303s] Computing alignments... [402.625s] Deallocating reference... [0.073724s] Loading reference sequences... [563.563s] Masking reference... [61.9117s] Building reference histograms... [12.0629s] Allocating buffers... [0.000177s] Initializing temporary storage... [0.005098s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.5533s] Building query index... [2.24218s] Building seed filter... [0.893615s] Searching alignments... [122.292s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 1. Building reference index... [22.0367s] Building query index... [2.48583s] Building seed filter... [0.914942s] Searching alignments... [107.262s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.6963s] Building query index... [2.52399s] Building seed filter... [0.924568s] Searching alignments... [92.1726s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.4917s] Building query index... [2.23432s] Building seed filter... [0.931033s] Searching alignments... [94.0876s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.3881s] Building query index... [2.02167s] Building seed filter... [0.92008s] Searching alignments... [70.029s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 1. Building reference index... [21.8949s] Building query index... [2.24172s] Building seed filter... [0.900885s] Searching alignments... [67.7117s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.663s] Building query index... [2.29053s] Building seed filter... [0.910304s] Searching alignments... [73.0686s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.5277s] Building query index... [2.02861s] Building seed filter... [0.900286s] Searching alignments... [65.3897s] Deallocating buffers... [0.1153s] Opening temporary output file... [0.001271s] Computing alignments... [427.049s] Deallocating reference... [0.07352s] Loading reference sequences... [517.279s] Masking reference... [61.973s] Building reference histograms... [11.19s] Allocating buffers... [0.00017s] Initializing temporary storage... [0.004678s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.6761s] Building query index... [2.22117s] Building seed filter... [0.89993s] Searching alignments... [131.12s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.2959s] Building query index... [2.47423s] Building seed filter... [0.945239s] Searching alignments... [113.538s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 2. Building reference index... [22.9051s] Building query index... [2.52338s] Building seed filter... [0.9553s] Searching alignments... [95.4015s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.7605s] Building query index... [2.22898s] Building seed filter... [0.92915s] Searching alignments... [99.4698s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.1666s] Building query index... [1.99539s] Building seed filter... [0.924579s] Searching alignments... [73.4843s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 1. Building reference index... [22.0305s] Building query index... [2.24307s] Building seed filter... [0.92355s] Searching alignments... [71.8436s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.6478s] Building query index... [2.2992s] Building seed filter... [0.922329s] Searching alignments... [76.659s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.3803s] Building query index... [2.02666s] Building seed filter... [0.923139s] Searching alignments... [68.3263s] Deallocating buffers... [0.115396s] Opening temporary output file... [0.001283s] Computing alignments... [453.491s] Deallocating reference... [0.067473s] Loading reference sequences... [501.927s] Masking reference... [62.2377s] Building reference histograms... [11.1252s] Allocating buffers... [0.000172s] Initializing temporary storage... [0.004817s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.6102s] Building query index... [2.19508s] Building seed filter... [0.898771s] Searching alignments... [113.085s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.07s] Building query index... [2.45757s] Building seed filter... [0.954138s] Searching alignments... [101.718s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.891s] Building query index... [2.52884s] Building seed filter... [0.959458s] Searching alignments... [92.9574s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.7883s] Building query index... [2.23575s] Building seed filter... [0.91532s] Searching alignments... [88.9837s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.2743s] Building query index... [2.00761s] Building seed filter... [0.887681s] Searching alignments... [68.4959s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 1. Building reference index... [21.9797s] Building query index... [2.2292s] Building seed filter... [0.899179s] Searching alignments... [66.9362s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.8593s] Building query index... [2.2979s] Building seed filter... [0.895472s] Searching alignments... [67.8018s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.5624s] Building query index... [2.00918s] Building seed filter... [0.900631s] Searching alignments... [64.5699s] Deallocating buffers... [0.117458s] Opening temporary output file... [0.001385s] Computing alignments... [408.806s] Deallocating reference... [0.067357s] Loading reference sequences... [219.308s] Masking reference... [22.9344s] Building reference histograms... [4.27781s] Allocating buffers... [0.000172s] Initializing temporary storage... [0.005083s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.16663s] Building query index... [2.25864s] Building seed filter... [0.464435s] Searching alignments... [55.3153s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.12624s] Building query index... [2.47443s] Building seed filter... [0.466607s] Searching alignments... [48.7001s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.32437s] Building query index... [2.53148s] Building seed filter... [0.456905s] Searching alignments... [42.5082s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.22153s] Building query index... [2.22502s] Building seed filter... [0.462646s] Searching alignments... [42.8001s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 0. Building reference index... [7.06344s] Building query index... [2.01013s] Building seed filter... [0.44084s] Searching alignments... [32.2088s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 1. Building reference index... [8.00968s] Building query index... [2.23617s] Building seed filter... [0.442559s] Searching alignments... [30.5625s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.32814s] Building query index... [2.31095s] Building seed filter... [0.453159s] Searching alignments... [32.1805s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.13418s] Building query index... [2.02461s] Building seed filter... [0.456932s] Searching alignments... [29.7985s] Deallocating buffers... [0.052145s] Opening temporary output file... [0.00185s] Computing alignments... [190.881s] Deallocating reference... [0.030031s] Loading reference sequences... [0.013614s] Deallocating buffers... [0.00812s] Joining output blocks... [110.027s] Deallocating queries... [0.02419s] Loading query sequences... [2.8e-05s] Closing the input file... [3.9e-05s] Closing the output file... [3.85193s] Closing the database file... [2.2e-05s] Deallocating taxonomy... [1.6e-05s] Total time = 39140.6s Reported 1185832373 pairwise alignments, 1185834939 HSPs. 40314141 queries aligned. diamond v0.9.26.127 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.081413s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.255926s] Opening the output file... [0.000405s] Loading query sequences... [209.097s] Masking queries... [129.517s] Building query seed set... [0.72524s] Algorithm: Double-indexed Building query histograms... [7.51566s] Allocating buffers... [0.00209s] Loading reference sequences... [46.3874s] Masking reference... [61.3248s] Building reference histograms... [12.495s] Allocating buffers... [0.000128s] Initializing temporary storage... [0.005329s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.6515s] Building query index... [8.84403s] Building seed filter... [1.18121s] Searching alignments... [479.991s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.1492s] Building query index... [10.869s] Building seed filter... [1.20085s] Searching alignments... [429.359s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.6495s] Building query index... [10.0407s] Building seed filter... [1.21754s] Searching alignments... [372.404s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.5971s] Building query index... [8.86571s] Building seed filter... [1.21576s] Searching alignments... [375.18s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.3119s] Building query index... [7.93926s] Building seed filter... [1.16329s] Searching alignments... [278.488s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 1. Building reference index... [22.006s] Building query index... [8.7985s] Building seed filter... [1.15795s] Searching alignments... [269.127s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.5934s] Building query index... [9.14122s] Building seed filter... [1.16324s] Searching alignments... [285.106s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.4168s] Building query index... [8.05794s] Building seed filter... [1.20723s] Searching alignments... [261.316s] Deallocating buffers... [0.128644s] Opening temporary output file... [0.001185s] Computing alignments... [1624.21s] Deallocating reference... [0.07868s] Loading reference sequences... [547.72s] Masking reference... [61.4948s] Building reference histograms... [11.8369s] Allocating buffers... [0.00012s] Initializing temporary storage... [0.004687s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.6366s] Building query index... [8.78532s] Building seed filter... [1.16687s] Searching alignments... [414.576s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.0762s] Building query index... [9.84222s] Building seed filter... [1.20393s] Searching alignments... [369.656s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.7306s] Building query index... [10.0852s] Building seed filter... [1.20093s] Searching alignments... [341.524s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.7857s] Building query index... [8.95798s] Building seed filter... [1.23965s] Searching alignments... [325.463s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.1876s] Building query index... [7.88877s] Building seed filter... [1.17971s] Searching alignments... [248.966s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 1. Building reference index... [21.883s] Building query index... [8.90935s] Building seed filter... [1.17556s] Searching alignments... [239.197s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.4524s] Building query index... [9.05999s] Building seed filter... [1.1653s] Searching alignments... [243.306s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.6117s] Building query index... [7.98935s] Building seed filter... [1.18408s] Searching alignments... [237.819s] Deallocating buffers... [0.125831s] Opening temporary output file... [0.001381s] Computing alignments... [1448.33s] Deallocating reference... [0.072978s] Loading reference sequences... [546.913s] Masking reference... [63.5844s] Building reference histograms... [12.3328s] Allocating buffers... [0.000133s] Initializing temporary storage... [0.22526s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.5174s] Building query index... [8.76914s] Building seed filter... [1.14995s] Searching alignments... [445.553s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 1. Building reference index... [22.3656s] Building query index... [9.82153s] Building seed filter... [1.16718s] Searching alignments... [395.917s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.6513s] Building query index... [10.0709s] Building seed filter... [1.17448s] Searching alignments... [345.32s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.4863s] Building query index... [8.94164s] Building seed filter... [1.18517s] Searching alignments... [345.482s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.2246s] Building query index... [7.88293s] Building seed filter... [1.17854s] Searching alignments... [259.061s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 1. Building reference index... [21.8141s] Building query index... [8.84979s] Building seed filter... [1.17144s] Searching alignments... [250.267s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.5286s] Building query index... [9.08385s] Building seed filter... [1.1437s] Searching alignments... [266.04s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.3221s] Building query index... [7.93484s] Building seed filter... [1.14558s] Searching alignments... [243.896s] Deallocating buffers... [0.125894s] Opening temporary output file... [0.001351s] Computing alignments... [1548.32s] Deallocating reference... [0.073368s] Loading reference sequences... [514.9s] Masking reference... [61.67s] Building reference histograms... [11.6196s] Allocating buffers... [0.000123s] Initializing temporary storage... [0.004275s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.5808s] Building query index... [8.80606s] Building seed filter... [1.16781s] Searching alignments... [477.598s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.1259s] Building query index... [9.9072s] Building seed filter... [1.21413s] Searching alignments... [420.578s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 2. Building reference index... [22.8185s] Building query index... [10.0624s] Building seed filter... [1.23792s] Searching alignments... [358.877s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.6889s] Building query index... [8.85659s] Building seed filter... [1.2388s] Searching alignments... [364.799s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.3801s] Building query index... [8.05481s] Building seed filter... [1.18012s] Searching alignments... [271.465s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 1. Building reference index... [22.0327s] Building query index... [8.85856s] Building seed filter... [1.17933s] Searching alignments... [262.947s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.7855s] Building query index... [9.07881s] Building seed filter... [1.17656s] Searching alignments... [280.834s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.4627s] Building query index... [7.9589s] Building seed filter... [1.15007s] Searching alignments... [251.11s] Deallocating buffers... [0.127214s] Opening temporary output file... [0.001389s] Computing alignments... [1623.84s] Deallocating reference... [0.06806s] Loading reference sequences... [482.631s] Masking reference... [61.736s] Building reference histograms... [12.2868s] Allocating buffers... [0.000133s] Initializing temporary storage... [0.00473s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.6572s] Building query index... [8.77844s] Building seed filter... [1.17592s] Searching alignments... [424.378s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.0537s] Building query index... [9.78531s] Building seed filter... [1.21376s] Searching alignments... [383.843s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.762s] Building query index... [10.0655s] Building seed filter... [1.19785s] Searching alignments... [349.422s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.6664s] Building query index... [8.90322s] Building seed filter... [1.17754s] Searching alignments... [334.886s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.5282s] Building query index... [7.96119s] Building seed filter... [1.16577s] Searching alignments... [254.579s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 1. Building reference index... [21.9189s] Building query index... [9.83566s] Building seed filter... [1.17414s] Searching alignments... [246.4s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.5244s] Building query index... [9.04524s] Building seed filter... [1.15027s] Searching alignments... [250.7s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.3872s] Building query index... [8.08943s] Building seed filter... [1.16318s] Searching alignments... [240.995s] Deallocating buffers... [0.127239s] Opening temporary output file... [0.001356s] Computing alignments... [1497.65s] Deallocating reference... [0.06473s] Loading reference sequences... [215.63s] Masking reference... [22.6133s] Building reference histograms... [4.35689s] Allocating buffers... [0.000152s] Initializing temporary storage... [0.004852s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.22455s] Building query index... [8.73221s] Building seed filter... [0.736761s] Searching alignments... [201.741s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.04845s] Building query index... [9.73762s] Building seed filter... [0.730254s] Searching alignments... [178.189s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.29481s] Building query index... [9.99685s] Building seed filter... [0.738287s] Searching alignments... [158.114s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.14159s] Building query index... [8.90728s] Building seed filter... [0.725774s] Searching alignments... [156.088s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 0. Building reference index... [6.98861s] Building query index... [7.8423s] Building seed filter... [0.695487s] Searching alignments... [118.82s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 1. Building reference index... [8.05934s] Building query index... [8.92769s] Building seed filter... [0.689303s] Searching alignments... [112.445s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.25548s] Building query index... [9.00138s] Building seed filter... [0.68103s] Searching alignments... [118.2s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.07936s] Building query index... [8.02295s] Building seed filter... [0.685795s] Searching alignments... [109.86s] Deallocating buffers... [0.050026s] Opening temporary output file... [0.002696s] Computing alignments... [666.32s] Deallocating reference... [0.030429s] Loading reference sequences... [0.000471s] Deallocating buffers... [0.034142s] Joining output blocks... [432.398s] Deallocating queries... [0.088774s] Loading query sequences... [41.8349s] Masking queries... [27.6324s] Building query seed set... [7e-06s] Building query histograms... [1.67196s] Allocating buffers... [0.001739s] Loading reference sequences... [47.661s] Masking reference... [63.1489s] Building reference histograms... [11.2913s] Allocating buffers... [0.000173s] Initializing temporary storage... [0.005173s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.5981s] Building query index... [2.09208s] Building seed filter... [0.918676s] Searching alignments... [105.014s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.1905s] Building query index... [2.01777s] Building seed filter... [0.928506s] Searching alignments... [92.5859s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.918s] Building query index... [2.08269s] Building seed filter... [0.92908s] Searching alignments... [80.3607s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.7667s] Building query index... [1.84871s] Building seed filter... [0.949034s] Searching alignments... [82.1781s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.2132s] Building query index... [1.65313s] Building seed filter... [0.883699s] Searching alignments... [61.0065s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 1. Building reference index... [21.8567s] Building query index... [1.85207s] Building seed filter... [0.925843s] Searching alignments... [59.2913s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.5528s] Building query index... [1.88413s] Building seed filter... [0.907563s] Searching alignments... [63.2715s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.5344s] Building query index... [1.6956s] Building seed filter... [0.901037s] Searching alignments... [57.2022s] Deallocating buffers... [0.118165s] Opening temporary output file... [0.001394s] Computing alignments... [357.897s] Deallocating reference... [0.08122s] Loading reference sequences... [554.945s] Masking reference... [62.5243s] Building reference histograms... [11.0613s] Allocating buffers... [0.000191s] Initializing temporary storage... [0.005166s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.6847s] Building query index... [1.81257s] Building seed filter... [0.903151s] Searching alignments... [89.3729s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.1231s] Building query index... [2.03286s] Building seed filter... [0.927955s] Searching alignments... [79.4338s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.6948s] Building query index... [2.08412s] Building seed filter... [0.891859s] Searching alignments... [73.6176s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.6985s] Building query index... [1.84612s] Building seed filter... [0.937916s] Searching alignments... [69.986s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.1492s] Building query index... [1.69565s] Building seed filter... [0.876792s] Searching alignments... [54.5827s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 1. Building reference index... [21.8978s] Building query index... [1.82866s] Building seed filter... [0.903769s] Searching alignments... [52.6403s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.5595s] Building query index... [1.90649s] Building seed filter... [0.899575s] Searching alignments... [53.8716s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.4089s] Building query index... [1.9416s] Building seed filter... [0.894062s] Searching alignments... [52.2206s] Deallocating buffers... [0.12209s] Opening temporary output file... [0.00137s] Computing alignments... [317.341s] Deallocating reference... [0.071672s] Loading reference sequences... [542.267s] Masking reference... [61.526s] Building reference histograms... [11.0081s] Allocating buffers... [0.000176s] Initializing temporary storage... [0.004873s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.5762s] Building query index... [1.83658s] Building seed filter... [0.869026s] Searching alignments... [98.0178s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 1. Building reference index... [22.0053s] Building query index... [2.01197s] Building seed filter... [0.911067s] Searching alignments... [86.7851s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.5835s] Building query index... [2.07564s] Building seed filter... [0.903966s] Searching alignments... [74.6802s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.5673s] Building query index... [1.84364s] Building seed filter... [0.89923s] Searching alignments... [74.8652s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.0578s] Building query index... [1.6596s] Building seed filter... [0.902956s] Searching alignments... [57.0193s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 1. Building reference index... [21.9443s] Building query index... [1.83672s] Building seed filter... [0.913441s] Searching alignments... [54.9436s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.6101s] Building query index... [1.87391s] Building seed filter... [0.905249s] Searching alignments... [58.9824s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.3935s] Building query index... [1.70454s] Building seed filter... [0.921628s] Searching alignments... [53.1382s] Deallocating buffers... [0.113155s] Opening temporary output file... [0.001355s] Computing alignments... [337.468s] Deallocating reference... [0.073515s] Loading reference sequences... [53.4263s] Masking reference... [61.9755s] Building reference histograms... [10.8017s] Allocating buffers... [0.000178s] Initializing temporary storage... [0.003826s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.8082s] Building query index... [1.82446s] Building seed filter... [0.905049s] Searching alignments... [104.849s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.2496s] Building query index... [2.03803s] Building seed filter... [0.893988s] Searching alignments... [91.885s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 2. Building reference index... [22.7923s] Building query index... [2.09065s] Building seed filter... [0.91332s] Searching alignments... [77.3402s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.6583s] Building query index... [1.87466s] Building seed filter... [0.953847s] Searching alignments... [79.5838s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.3549s] Building query index... [1.64713s] Building seed filter... [0.907689s] Searching alignments... [59.393s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 1. Building reference index... [22.0825s] Building query index... [2.04794s] Building seed filter... [0.891641s] Searching alignments... [57.6446s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.5284s] Building query index... [1.93518s] Building seed filter... [0.913258s] Searching alignments... [62.5933s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.4232s] Building query index... [1.65902s] Building seed filter... [0.887006s] Searching alignments... [54.4845s] Deallocating buffers... [0.112508s] Opening temporary output file... [0.0013s] Computing alignments... [357.187s] Deallocating reference... [0.063832s] Loading reference sequences... [38.0275s] Masking reference... [63.1799s] Building reference histograms... [10.7199s] Allocating buffers... [0.000194s] Initializing temporary storage... [0.004002s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.5758s] Building query index... [1.81361s] Building seed filter... [0.896187s] Searching alignments... [90.5889s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.3121s] Building query index... [2.00537s] Building seed filter... [0.90777s] Searching alignments... [81.7054s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.9657s] Building query index... [2.08838s] Building seed filter... [0.903519s] Searching alignments... [74.8846s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.8031s] Building query index... [1.84557s] Building seed filter... [0.911785s] Searching alignments... [71.8215s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.2163s] Building query index... [1.6427s] Building seed filter... [0.881366s] Searching alignments... [56.1657s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 1. Building reference index... [21.9837s] Building query index... [1.86104s] Building seed filter... [0.904844s] Searching alignments... [54.2324s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.6963s] Building query index... [1.89468s] Building seed filter... [0.879019s] Searching alignments... [56.4783s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.5448s] Building query index... [1.66865s] Building seed filter... [0.924209s] Searching alignments... [52.1413s] Deallocating buffers... [0.120059s] Opening temporary output file... [0.00182s] Computing alignments... [324.857s] Deallocating reference... [0.066063s] Loading reference sequences... [18.2701s] Masking reference... [22.874s] Building reference histograms... [4.11082s] Allocating buffers... [0.00017s] Initializing temporary storage... [0.00394s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.02247s] Building query index... [1.82173s] Building seed filter... [0.44341s] Searching alignments... [45.0595s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.14135s] Building query index... [2.01828s] Building seed filter... [0.435026s] Searching alignments... [39.5894s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.33869s] Building query index... [2.28838s] Building seed filter... [0.436224s] Searching alignments... [34.2806s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.22185s] Building query index... [1.88753s] Building seed filter... [0.443541s] Searching alignments... [34.4775s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 0. Building reference index... [6.99892s] Building query index... [1.66136s] Building seed filter... [0.424461s] Searching alignments... [26.3629s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 1. Building reference index... [8.05242s] Building query index... [1.84382s] Building seed filter... [0.422804s] Searching alignments... [24.9585s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.24008s] Building query index... [1.89962s] Building seed filter... [0.440513s] Searching alignments... [26.1452s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.08946s] Building query index... [1.67225s] Building seed filter... [0.431268s] Searching alignments... [24.606s] Deallocating buffers... [0.052328s] Opening temporary output file... [0.001813s] Computing alignments... [152.314s] Deallocating reference... [0.029335s] Loading reference sequences... [0.017896s] Deallocating buffers... [0.006961s] Joining output blocks... [88.883s] Deallocating queries... [0.01946s] Loading query sequences... [1.8e-05s] Closing the input file... [5e-05s] Closing the output file... [4.03019s] Closing the database file... [3.4e-05s] Deallocating taxonomy... [1.2e-05s] Total time = 35129s Reported 1131422093 pairwise alignments, 1131424025 HSPs. 38024265 queries aligned. diamond v0.9.26.127 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.076536s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.130521s] Opening the output file... [0.000413s] Loading query sequences... [197.713s] Masking queries... [192.973s] Building query seed set... [0.575276s] Algorithm: Double-indexed Building query histograms... [8.19318s] Allocating buffers... [0.002216s] Loading reference sequences... [45.3895s] Masking reference... [62.9682s] Building reference histograms... [10.7702s] Allocating buffers... [0.000132s] Initializing temporary storage... [0.005092s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.636s] Building query index... [8.54089s] Building seed filter... [1.15551s] Searching alignments... [484.199s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.1827s] Building query index... [9.38354s] Building seed filter... [1.14644s] Searching alignments... [431.259s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.6992s] Building query index... [9.60435s] Building seed filter... [1.18339s] Searching alignments... [375.237s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.5246s] Building query index... [8.50805s] Building seed filter... [1.18379s] Searching alignments... [381.194s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.2176s] Building query index... [7.58644s] Building seed filter... [1.13162s] Searching alignments... [279.613s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 1. Building reference index... [21.9323s] Building query index... [8.39107s] Building seed filter... [1.11701s] Searching alignments... [271.241s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.5804s] Building query index... [8.66205s] Building seed filter... [1.10774s] Searching alignments... [288.975s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.5204s] Building query index... [7.62162s] Building seed filter... [1.12447s] Searching alignments... [262.809s] Deallocating buffers... [0.128539s] Opening temporary output file... [0.001722s] Computing alignments... [1682.5s] Deallocating reference... [0.078002s] Loading reference sequences... [555.316s] Masking reference... [61.7499s] Building reference histograms... [11.0766s] Allocating buffers... [0.000126s] Initializing temporary storage... [0.004835s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.9514s] Building query index... [8.3418s] Building seed filter... [1.13152s] Searching alignments... [410.355s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.1752s] Building query index... [9.3705s] Building seed filter... [1.15651s] Searching alignments... [366.252s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.8216s] Building query index... [9.65046s] Building seed filter... [1.16403s] Searching alignments... [335.893s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.558s] Building query index... [8.49007s] Building seed filter... [1.15183s] Searching alignments... [322.905s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.1619s] Building query index... [7.56056s] Building seed filter... [1.12302s] Searching alignments... [248.735s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 1. Building reference index... [22.0045s] Building query index... [8.45991s] Building seed filter... [1.11832s] Searching alignments... [236.976s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.6473s] Building query index... [8.66782s] Building seed filter... [1.13508s] Searching alignments... [242.859s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.4049s] Building query index... [7.63845s] Building seed filter... [1.14151s] Searching alignments... [233.015s] Deallocating buffers... [0.121362s] Opening temporary output file... [0.001334s] Computing alignments... [1475.21s] Deallocating reference... [0.074764s] Loading reference sequences... [544.388s] Masking reference... [61.5069s] Building reference histograms... [11.6164s] Allocating buffers... [0.000127s] Initializing temporary storage... [0.005004s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.6512s] Building query index... [8.37387s] Building seed filter... [1.14336s] Searching alignments... [445.972s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 1. Building reference index... [22.1147s] Building query index... [9.29805s] Building seed filter... [1.16753s] Searching alignments... [395.354s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.8453s] Building query index... [9.59638s] Building seed filter... [1.19205s] Searching alignments... [342.956s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.5253s] Building query index... [8.39233s] Building seed filter... [1.17378s] Searching alignments... [350.115s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.1814s] Building query index... [7.53655s] Building seed filter... [1.13536s] Searching alignments... [258.449s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 1. Building reference index... [21.9888s] Building query index... [8.40173s] Building seed filter... [1.12362s] Searching alignments... [249.718s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.6422s] Building query index... [8.71672s] Building seed filter... [1.1354s] Searching alignments... [266.43s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.3528s] Building query index... [7.65527s] Building seed filter... [1.10801s] Searching alignments... [241.341s] Deallocating buffers... [0.117097s] Opening temporary output file... [0.001243s] Computing alignments... [1575.09s] Deallocating reference... [0.073673s] Loading reference sequences... [500.79s] Masking reference... [63.5747s] Building reference histograms... [11.4026s] Allocating buffers... [0.000124s] Initializing temporary storage... [0.00489s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.7888s] Building query index... [8.37271s] Building seed filter... [1.13437s] Searching alignments... [476.371s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.2884s] Building query index... [10.7877s] Building seed filter... [1.17846s] Searching alignments... [422.667s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 2. Building reference index... [22.7503s] Building query index... [9.60218s] Building seed filter... [1.20993s] Searching alignments... [353.372s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.5933s] Building query index... [8.44857s] Building seed filter... [1.19501s] Searching alignments... [373.783s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.2s] Building query index... [7.55083s] Building seed filter... [1.1369s] Searching alignments... [269.24s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 1. Building reference index... [22.0581s] Building query index... [8.42891s] Building seed filter... [1.15949s] Searching alignments... [263.743s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.7017s] Building query index... [8.71516s] Building seed filter... [1.13936s] Searching alignments... [283.667s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.744s] Building query index... [7.61288s] Building seed filter... [1.16255s] Searching alignments... [249.132s] Deallocating buffers... [0.126181s] Opening temporary output file... [0.001279s] Computing alignments... [1669.11s] Deallocating reference... [0.067654s] Loading reference sequences... [523.26s] Masking reference... [61.8182s] Building reference histograms... [11.8665s] Allocating buffers... [0.000132s] Initializing temporary storage... [0.004649s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.6323s] Building query index... [9.7567s] Building seed filter... [1.17853s] Searching alignments... [417.327s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.1907s] Building query index... [9.32206s] Building seed filter... [1.1593s] Searching alignments... [378.471s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.8135s] Building query index... [9.58245s] Building seed filter... [1.15694s] Searching alignments... [342.908s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.6637s] Building query index... [8.51051s] Building seed filter... [1.20391s] Searching alignments... [332.686s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.2731s] Building query index... [7.52162s] Building seed filter... [1.1332s] Searching alignments... [255.39s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 1. Building reference index... [22.387s] Building query index... [8.52697s] Building seed filter... [1.10615s] Searching alignments... [244.91s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.527s] Building query index... [8.63222s] Building seed filter... [1.12809s] Searching alignments... [250.322s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.8538s] Building query index... [7.66611s] Building seed filter... [1.12932s] Searching alignments... [236.633s] Deallocating buffers... [0.126868s] Opening temporary output file... [0.001223s] Computing alignments... [1520.98s] Deallocating reference... [0.066675s] Loading reference sequences... [240.628s] Masking reference... [23.0944s] Building reference histograms... [4.11313s] Allocating buffers... [0.000153s] Initializing temporary storage... [0.004589s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.17902s] Building query index... [8.34373s] Building seed filter... [0.672978s] Searching alignments... [202.797s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.09004s] Building query index... [9.37122s] Building seed filter... [0.68358s] Searching alignments... [180.112s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.34487s] Building query index... [9.59347s] Building seed filter... [0.697396s] Searching alignments... [158.973s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.13932s] Building query index... [8.40491s] Building seed filter... [0.695873s] Searching alignments... [157.798s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 0. Building reference index... [6.99738s] Building query index... [7.60523s] Building seed filter... [0.675641s] Searching alignments... [118.029s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 1. Building reference index... [8.03198s] Building query index... [8.45321s] Building seed filter... [0.67133s] Searching alignments... [112.405s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.22699s] Building query index... [8.68237s] Building seed filter... [0.673831s] Searching alignments... [117.762s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.21466s] Building query index... [7.64632s] Building seed filter... [0.673088s] Searching alignments... [108.632s] Deallocating buffers... [0.053054s] Opening temporary output file... [0.002287s] Computing alignments... [691.578s] Deallocating reference... [0.030278s] Loading reference sequences... [6.2e-05s] Deallocating buffers... [0.034319s] Joining output blocks... [432.693s] Deallocating queries... [0.093282s] Loading query sequences... [41.7714s] Masking queries... [40.4412s] Building query seed set... [7e-06s] Building query histograms... [1.60071s] Allocating buffers... [0.00118s] Loading reference sequences... [50.0119s] Masking reference... [63.0524s] Building reference histograms... [10.7788s] Allocating buffers... [0.000183s] Initializing temporary storage... [0.005313s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.5646s] Building query index... [1.82634s] Building seed filter... [0.892427s] Searching alignments... [102.283s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.0888s] Building query index... [1.95961s] Building seed filter... [0.905235s] Searching alignments... [90.8067s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.7625s] Building query index... [2.0012s] Building seed filter... [0.935902s] Searching alignments... [79.8284s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.8482s] Building query index... [1.78526s] Building seed filter... [0.915339s] Searching alignments... [79.0281s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.2306s] Building query index... [1.5964s] Building seed filter... [0.875001s] Searching alignments... [59.455s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 1. Building reference index... [21.8191s] Building query index... [1.79517s] Building seed filter... [0.890231s] Searching alignments... [57.4541s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.5071s] Building query index... [1.83092s] Building seed filter... [0.8975s] Searching alignments... [61.2914s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.496s] Building query index... [1.64671s] Building seed filter... [0.928755s] Searching alignments... [56.3505s] Deallocating buffers... [0.124245s] Opening temporary output file... [0.001263s] Computing alignments... [352.796s] Deallocating reference... [0.077503s] Loading reference sequences... [595.661s] Masking reference... [61.9295s] Building reference histograms... [10.8861s] Allocating buffers... [0.000194s] Initializing temporary storage... [0.004646s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.7478s] Building query index... [1.75438s] Building seed filter... [0.861038s] Searching alignments... [86.0081s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.1316s] Building query index... [1.96064s] Building seed filter... [0.891703s] Searching alignments... [76.4126s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.7554s] Building query index... [2.01456s] Building seed filter... [0.911554s] Searching alignments... [70.1558s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.6508s] Building query index... [2.0099s] Building seed filter... [0.928251s] Searching alignments... [66.6898s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.2224s] Building query index... [1.61473s] Building seed filter... [0.907738s] Searching alignments... [52.8884s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 1. Building reference index... [21.8396s] Building query index... [1.76641s] Building seed filter... [0.884664s] Searching alignments... [50.9713s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.612s] Building query index... [1.83237s] Building seed filter... [0.927673s] Searching alignments... [52.413s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.5593s] Building query index... [1.62436s] Building seed filter... [0.879728s] Searching alignments... [49.8216s] Deallocating buffers... [0.121686s] Opening temporary output file... [0.001231s] Computing alignments... [313.577s] Deallocating reference... [0.075657s] Loading reference sequences... [588.541s] Masking reference... [61.4879s] Building reference histograms... [11.0517s] Allocating buffers... [0.000175s] Initializing temporary storage... [0.005409s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.4451s] Building query index... [1.75852s] Building seed filter... [0.886431s] Searching alignments... [93.7976s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 1. Building reference index... [21.9757s] Building query index... [1.95516s] Building seed filter... [0.912626s] Searching alignments... [84.2826s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.6908s] Building query index... [2.0171s] Building seed filter... [0.918478s] Searching alignments... [71.4513s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.6367s] Building query index... [1.77387s] Building seed filter... [0.925333s] Searching alignments... [73.9826s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.0899s] Building query index... [1.59828s] Building seed filter... [0.894502s] Searching alignments... [55.1453s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 1. Building reference index... [21.9815s] Building query index... [1.81848s] Building seed filter... [0.904583s] Searching alignments... [52.855s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.4849s] Building query index... [1.82943s] Building seed filter... [0.922681s] Searching alignments... [57.0187s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.4091s] Building query index... [1.62888s] Building seed filter... [0.917463s] Searching alignments... [52.1912s] Deallocating buffers... [0.115477s] Opening temporary output file... [0.001236s] Computing alignments... [334.845s] Deallocating reference... [0.073626s] Loading reference sequences... [58.9539s] Masking reference... [62.3797s] Building reference histograms... [10.7379s] Allocating buffers... [0.000173s] Initializing temporary storage... [0.004823s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.5332s] Building query index... [1.75598s] Building seed filter... [0.884911s] Searching alignments... [101.567s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.2269s] Building query index... [1.98448s] Building seed filter... [0.889021s] Searching alignments... [88.7876s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 2. Building reference index... [22.8203s] Building query index... [2.01153s] Building seed filter... [0.900909s] Searching alignments... [76.2046s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.5969s] Building query index... [1.78262s] Building seed filter... [0.90908s] Searching alignments... [78.4452s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.3061s] Building query index... [1.62873s] Building seed filter... [0.869063s] Searching alignments... [58.434s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 1. Building reference index... [22.03s] Building query index... [1.7734s] Building seed filter... [0.901149s] Searching alignments... [55.8158s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.566s] Building query index... [1.81662s] Building seed filter... [0.891855s] Searching alignments... [60.9697s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.5556s] Building query index... [1.61984s] Building seed filter... [0.915689s] Searching alignments... [53.1485s] Deallocating buffers... [0.110645s] Opening temporary output file... [0.001292s] Computing alignments... [353.324s] Deallocating reference... [0.070063s] Loading reference sequences... [39.5995s] Masking reference... [62.8572s] Building reference histograms... [10.9766s] Allocating buffers... [0.000175s] Initializing temporary storage... [0.004894s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.7218s] Building query index... [1.78011s] Building seed filter... [0.884293s] Searching alignments... [87.3811s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.1838s] Building query index... [1.96176s] Building seed filter... [0.884241s] Searching alignments... [79.3957s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.6352s] Building query index... [2.00397s] Building seed filter... [0.883398s] Searching alignments... [72.2267s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.6775s] Building query index... [1.81231s] Building seed filter... [0.891609s] Searching alignments... [69.3357s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.2848s] Building query index... [1.62717s] Building seed filter... [0.883073s] Searching alignments... [53.8997s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 1. Building reference index... [22.0804s] Building query index... [1.79624s] Building seed filter... [0.892511s] Searching alignments... [52.149s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.6869s] Building query index... [1.83186s] Building seed filter... [0.911342s] Searching alignments... [53.9238s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.5797s] Building query index... [1.61427s] Building seed filter... [0.901584s] Searching alignments... [50.4925s] Deallocating buffers... [0.125829s] Opening temporary output file... [0.001787s] Computing alignments... [317.546s] Deallocating reference... [0.064831s] Loading reference sequences... [19.3133s] Masking reference... [23.1299s] Building reference histograms... [4.03101s] Allocating buffers... [0.00017s] Initializing temporary storage... [0.003257s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.15113s] Building query index... [1.76682s] Building seed filter... [0.415299s] Searching alignments... [42.9363s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.0537s] Building query index... [1.96648s] Building seed filter... [0.42793s] Searching alignments... [37.8085s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.27735s] Building query index... [2.03057s] Building seed filter... [0.422557s] Searching alignments... [33.4589s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.14703s] Building query index... [1.7967s] Building seed filter... [0.419293s] Searching alignments... [33.4274s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 0. Building reference index... [6.99234s] Building query index... [1.61587s] Building seed filter... [0.425627s] Searching alignments... [25.138s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 1. Building reference index... [8.00107s] Building query index... [1.79968s] Building seed filter... [0.419594s] Searching alignments... [24.7233s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.25363s] Building query index... [2.03453s] Building seed filter... [0.411253s] Searching alignments... [25.8471s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.17378s] Building query index... [1.64422s] Building seed filter... [0.413446s] Searching alignments... [23.9211s] Deallocating buffers... [0.050712s] Opening temporary output file... [0.00188s] Computing alignments... [147.78s] Deallocating reference... [0.029358s] Loading reference sequences... [0.11383s] Deallocating buffers... [0.009001s] Joining output blocks... [87.7046s] Deallocating queries... [0.01889s] Loading query sequences... [1.8e-05s] Closing the input file... [3.6e-05s] Closing the output file... [3.70745s] Closing the database file... [3.4e-05s] Deallocating taxonomy... [1.2e-05s] Total time = 35383.5s Reported 954766023 pairwise alignments, 954768075 HSPs. 41566116 queries aligned. diamond v0.9.26.127 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.1086s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.204099s] Opening the output file... [0.000386s] Loading query sequences... [212.684s] Masking queries... [140.802s] Building query seed set... [0.794268s] Algorithm: Double-indexed Building query histograms... [7.4671s] Allocating buffers... [0.003557s] Loading reference sequences... [51.4053s] Masking reference... [62.7394s] Building reference histograms... [11.1609s] Allocating buffers... [0.000136s] Initializing temporary storage... [0.005527s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.6661s] Building query index... [8.41272s] Building seed filter... [1.16981s] Searching alignments... [454.248s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.1352s] Building query index... [9.27545s] Building seed filter... [1.17698s] Searching alignments... [408.335s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.6387s] Building query index... [9.59407s] Building seed filter... [1.17828s] Searching alignments... [356.037s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.7179s] Building query index... [8.41295s] Building seed filter... [1.1954s] Searching alignments... [357.07s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.25s] Building query index... [7.5398s] Building seed filter... [1.15884s] Searching alignments... [262.699s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 1. Building reference index... [21.9364s] Building query index... [8.28074s] Building seed filter... [1.12645s] Searching alignments... [253.731s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.6199s] Building query index... [8.55902s] Building seed filter... [1.13836s] Searching alignments... [268.973s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.5113s] Building query index... [7.61923s] Building seed filter... [1.16182s] Searching alignments... [246.629s] Deallocating buffers... [0.127207s] Opening temporary output file... [0.002273s] Computing alignments... [1530.5s] Deallocating reference... [0.076343s] Loading reference sequences... [578.836s] Masking reference... [61.519s] Building reference histograms... [10.8482s] Allocating buffers... [0.000132s] Initializing temporary storage... [0.004542s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.4413s] Building query index... [8.2933s] Building seed filter... [1.20035s] Searching alignments... [385.945s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.0404s] Building query index... [9.36751s] Building seed filter... [1.20212s] Searching alignments... [344.358s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.9896s] Building query index... [9.54954s] Building seed filter... [1.21623s] Searching alignments... [318.347s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.7053s] Building query index... [8.40737s] Building seed filter... [1.24022s] Searching alignments... [302.182s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.3691s] Building query index... [7.51966s] Building seed filter... [1.18507s] Searching alignments... [232.515s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 1. Building reference index... [21.859s] Building query index... [8.39987s] Building seed filter... [1.13327s] Searching alignments... [223.162s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.64s] Building query index... [8.58683s] Building seed filter... [1.18127s] Searching alignments... [227.6s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.47s] Building query index... [7.65271s] Building seed filter... [1.14289s] Searching alignments... [219.089s] Deallocating buffers... [0.124659s] Opening temporary output file... [0.001321s] Computing alignments... [1341.95s] Deallocating reference... [0.072794s] Loading reference sequences... [562.033s] Masking reference... [61.5519s] Building reference histograms... [11.2493s] Allocating buffers... [0.000134s] Initializing temporary storage... [0.004741s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.5423s] Building query index... [8.30331s] Building seed filter... [1.12949s] Searching alignments... [421.965s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 1. Building reference index... [22.1149s] Building query index... [9.40063s] Building seed filter... [1.19158s] Searching alignments... [372.482s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.6529s] Building query index... [9.5479s] Building seed filter... [1.18217s] Searching alignments... [323.317s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.5552s] Building query index... [8.39742s] Building seed filter... [1.15982s] Searching alignments... [327.524s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.1138s] Building query index... [7.48882s] Building seed filter... [1.13312s] Searching alignments... [243.717s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 1. Building reference index... [21.7178s] Building query index... [8.37551s] Building seed filter... [1.14601s] Searching alignments... [235.145s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.3785s] Building query index... [8.55957s] Building seed filter... [1.1316s] Searching alignments... [249.601s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.3059s] Building query index... [7.58732s] Building seed filter... [1.13754s] Searching alignments... [224.81s] Deallocating buffers... [0.120343s] Opening temporary output file... [0.001203s] Computing alignments... [1453.15s] Deallocating reference... [0.073397s] Loading reference sequences... [524.48s] Masking reference... [61.5106s] Building reference histograms... [11.1403s] Allocating buffers... [0.000203s] Initializing temporary storage... [0.00561s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.4948s] Building query index... [8.30399s] Building seed filter... [1.21738s] Searching alignments... [448.212s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.0805s] Building query index... [9.1998s] Building seed filter... [1.22003s] Searching alignments... [396.815s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 2. Building reference index... [22.8364s] Building query index... [9.51521s] Building seed filter... [1.14596s] Searching alignments... [335.797s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.583s] Building query index... [8.38039s] Building seed filter... [1.18739s] Searching alignments... [348.585s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.1842s] Building query index... [7.6007s] Building seed filter... [1.1473s] Searching alignments... [256.786s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 1. Building reference index... [21.9304s] Building query index... [8.34401s] Building seed filter... [1.1181s] Searching alignments... [247.317s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.5368s] Building query index... [8.63458s] Building seed filter... [1.15252s] Searching alignments... [263.724s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.5246s] Building query index... [7.55124s] Building seed filter... [1.13637s] Searching alignments... [234.141s] Deallocating buffers... [0.123372s] Opening temporary output file... [0.001262s] Computing alignments... [1509.2s] Deallocating reference... [0.06317s] Loading reference sequences... [522.555s] Masking reference... [62.1053s] Building reference histograms... [11.0073s] Allocating buffers... [0.00014s] Initializing temporary storage... [0.005462s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.8248s] Building query index... [8.33537s] Building seed filter... [1.1289s] Searching alignments... [392.569s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.1967s] Building query index... [9.23443s] Building seed filter... [1.15791s] Searching alignments... [355.114s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.7161s] Building query index... [9.55448s] Building seed filter... [1.18642s] Searching alignments... [328.267s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.6785s] Building query index... [8.4261s] Building seed filter... [1.17853s] Searching alignments... [312.321s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.4147s] Building query index... [7.47706s] Building seed filter... [1.13823s] Searching alignments... [238.368s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 1. Building reference index... [21.8549s] Building query index... [8.36899s] Building seed filter... [1.15441s] Searching alignments... [228.901s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.6484s] Building query index... [9.91146s] Building seed filter... [1.11472s] Searching alignments... [236.922s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.4752s] Building query index... [7.55448s] Building seed filter... [1.14549s] Searching alignments... [224.322s] Deallocating buffers... [0.127413s] Opening temporary output file... [0.00124s] Computing alignments... [1364.16s] Deallocating reference... [0.063705s] Loading reference sequences... [216.35s] Masking reference... [22.8009s] Building reference histograms... [4.11005s] Allocating buffers... [0.000154s] Initializing temporary storage... [0.004928s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.05756s] Building query index... [8.30335s] Building seed filter... [0.705386s] Searching alignments... [191.331s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.06836s] Building query index... [9.25013s] Building seed filter... [0.686874s] Searching alignments... [170.027s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.28628s] Building query index... [9.5501s] Building seed filter... [0.702164s] Searching alignments... [149.443s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.15262s] Building query index... [8.42278s] Building seed filter... [0.695798s] Searching alignments... [148.889s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 0. Building reference index... [6.99611s] Building query index... [7.42407s] Building seed filter... [0.644426s] Searching alignments... [111.086s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 1. Building reference index... [8.03279s] Building query index... [8.37232s] Building seed filter... [0.66854s] Searching alignments... [105.637s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.24397s] Building query index... [8.53593s] Building seed filter... [0.661253s] Searching alignments... [111.245s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.08705s] Building query index... [7.50539s] Building seed filter... [0.675852s] Searching alignments... [102.488s] Deallocating buffers... [0.053871s] Opening temporary output file... [0.002037s] Computing alignments... [622.269s] Deallocating reference... [0.030477s] Loading reference sequences... [0.022127s] Deallocating buffers... [0.031439s] Joining output blocks... [420.863s] Deallocating queries... [0.090792s] Loading query sequences... [35.2934s] Masking queries... [25.1135s] Building query seed set... [7e-06s] Building query histograms... [1.30142s] Allocating buffers... [0.00098s] Loading reference sequences... [47.3581s] Masking reference... [63.1451s] Building reference histograms... [11.3074s] Allocating buffers... [0.000195s] Initializing temporary storage... [0.005348s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.5877s] Building query index... [1.45748s] Building seed filter... [0.864195s] Searching alignments... [79.8828s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.2033s] Building query index... [1.59905s] Building seed filter... [0.900576s] Searching alignments... [71.2918s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.8228s] Building query index... [1.62645s] Building seed filter... [0.926511s] Searching alignments... [62.0145s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.7974s] Building query index... [1.43073s] Building seed filter... [0.914927s] Searching alignments... [62.7339s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.3765s] Building query index... [1.31409s] Building seed filter... [0.870644s] Searching alignments... [46.6419s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 1. Building reference index... [22.2366s] Building query index... [1.44776s] Building seed filter... [0.871136s] Searching alignments... [45.3786s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.6123s] Building query index... [1.48133s] Building seed filter... [0.887802s] Searching alignments... [48.0574s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.6071s] Building query index... [1.30386s] Building seed filter... [0.867471s] Searching alignments... [43.4306s] Deallocating buffers... [0.114743s] Opening temporary output file... [0.001304s] Computing alignments... [271.585s] Deallocating reference... [0.082895s] Loading reference sequences... [557.914s] Masking reference... [63.0166s] Building reference histograms... [12.0698s] Allocating buffers... [0.000178s] Initializing temporary storage... [0.004845s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.4494s] Building query index... [1.45016s] Building seed filter... [0.90037s] Searching alignments... [67.7425s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.1717s] Building query index... [1.58465s] Building seed filter... [0.872309s] Searching alignments... [60.3545s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.6807s] Building query index... [1.638s] Building seed filter... [0.877761s] Searching alignments... [55.4717s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.6564s] Building query index... [1.44372s] Building seed filter... [0.882875s] Searching alignments... [52.7579s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.3181s] Building query index... [1.30376s] Building seed filter... [0.880275s] Searching alignments... [42.3727s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 1. Building reference index... [21.8688s] Building query index... [1.43746s] Building seed filter... [0.897629s] Searching alignments... [40.1449s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.6373s] Building query index... [1.49374s] Building seed filter... [0.895063s] Searching alignments... [40.9227s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.3739s] Building query index... [1.30837s] Building seed filter... [0.89159s] Searching alignments... [39.6274s] Deallocating buffers... [0.120231s] Opening temporary output file... [0.001164s] Computing alignments... [238.212s] Deallocating reference... [0.07511s] Loading reference sequences... [554.255s] Masking reference... [63.1035s] Building reference histograms... [11.1662s] Allocating buffers... [0.000179s] Initializing temporary storage... [0.007058s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.4311s] Building query index... [1.45493s] Building seed filter... [0.836391s] Searching alignments... [73.9921s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 1. Building reference index... [22.0415s] Building query index... [1.5883s] Building seed filter... [0.873967s] Searching alignments... [65.5246s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.6196s] Building query index... [1.64385s] Building seed filter... [0.857023s] Searching alignments... [56.2179s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.5652s] Building query index... [1.44942s] Building seed filter... [0.883353s] Searching alignments... [58.0694s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.1696s] Building query index... [1.32563s] Building seed filter... [0.856288s] Searching alignments... [43.2916s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 1. Building reference index... [21.7827s] Building query index... [1.44083s] Building seed filter... [0.847156s] Searching alignments... [41.8306s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.4263s] Building query index... [1.47481s] Building seed filter... [0.891803s] Searching alignments... [44.6649s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.3459s] Building query index... [1.31518s] Building seed filter... [0.858801s] Searching alignments... [40.7784s] Deallocating buffers... [0.124187s] Opening temporary output file... [0.001191s] Computing alignments... [255.495s] Deallocating reference... [0.075382s] Loading reference sequences... [51.3346s] Masking reference... [62.84s] Building reference histograms... [11.9789s] Allocating buffers... [0.000174s] Initializing temporary storage... [0.004879s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.6424s] Building query index... [1.44092s] Building seed filter... [0.861506s] Searching alignments... [78.7786s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.1673s] Building query index... [1.59464s] Building seed filter... [0.903654s] Searching alignments... [69.7244s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 2. Building reference index... [22.8255s] Building query index... [1.64974s] Building seed filter... [0.899935s] Searching alignments... [58.3682s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.7563s] Building query index... [1.44694s] Building seed filter... [0.913582s] Searching alignments... [61.9919s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.2553s] Building query index... [1.29921s] Building seed filter... [0.861489s] Searching alignments... [45.3042s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 1. Building reference index... [21.9138s] Building query index... [1.47752s] Building seed filter... [0.869237s] Searching alignments... [43.8198s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.8607s] Building query index... [1.496s] Building seed filter... [0.879106s] Searching alignments... [47.6061s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.7007s] Building query index... [1.30322s] Building seed filter... [0.871817s] Searching alignments... [42.1662s] Deallocating buffers... [0.113488s] Opening temporary output file... [0.000671s] Computing alignments... [268.096s] Deallocating reference... [0.066919s] Loading reference sequences... [37.1809s] Masking reference... [62.9468s] Building reference histograms... [11.2382s] Allocating buffers... [0.000192s] Initializing temporary storage... [0.004938s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.743s] Building query index... [1.4357s] Building seed filter... [0.858413s] Searching alignments... [68.3259s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.1526s] Building query index... [1.58753s] Building seed filter... [0.879654s] Searching alignments... [62.9974s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.7921s] Building query index... [1.63871s] Building seed filter... [0.896465s] Searching alignments... [56.9685s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.5608s] Building query index... [1.44823s] Building seed filter... [0.906074s] Searching alignments... [54.7257s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.2889s] Building query index... [1.30763s] Building seed filter... [0.865096s] Searching alignments... [42.4432s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 1. Building reference index... [21.8925s] Building query index... [1.44223s] Building seed filter... [0.915907s] Searching alignments... [41.4562s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.4336s] Building query index... [1.47818s] Building seed filter... [0.883069s] Searching alignments... [42.2745s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.5321s] Building query index... [1.31859s] Building seed filter... [0.88033s] Searching alignments... [40.2591s] Deallocating buffers... [0.115122s] Opening temporary output file... [0.001868s] Computing alignments... [241.773s] Deallocating reference... [0.066144s] Loading reference sequences... [17.4994s] Masking reference... [22.6815s] Building reference histograms... [4.5862s] Allocating buffers... [0.000313s] Initializing temporary storage... [0.003842s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.18414s] Building query index... [1.46867s] Building seed filter... [0.407534s] Searching alignments... [33.6125s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.05426s] Building query index... [1.61119s] Building seed filter... [0.424852s] Searching alignments... [29.7808s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.42712s] Building query index... [1.64292s] Building seed filter... [0.41362s] Searching alignments... [26.5859s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.22974s] Building query index... [1.45337s] Building seed filter... [0.407922s] Searching alignments... [26.6016s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 0. Building reference index... [7.04571s] Building query index... [1.32278s] Building seed filter... [0.40367s] Searching alignments... [20.111s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 1. Building reference index... [8.06719s] Building query index... [1.47693s] Building seed filter... [0.395007s] Searching alignments... [19.4144s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.22691s] Building query index... [1.49044s] Building seed filter... [0.393873s] Searching alignments... [19.8308s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.11576s] Building query index... [1.31925s] Building seed filter... [0.410186s] Searching alignments... [18.4457s] Deallocating buffers... [0.045062s] Opening temporary output file... [0.001944s] Computing alignments... [113.823s] Deallocating reference... [0.029125s] Loading reference sequences... [0.004687s] Deallocating buffers... [0.005754s] Joining output blocks... [69.7696s] Deallocating queries... [0.026041s] Loading query sequences... [3.1e-05s] Closing the input file... [6.6e-05s] Closing the output file... [3.62337s] Closing the database file... [4.3e-05s] Deallocating taxonomy... [1.7e-05s] Total time = 32539.7s Reported 921744318 pairwise alignments, 921747878 HSPs. 39142730 queries aligned. diamond v0.9.26.127 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.13297s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.444251s] Opening the output file... [0.00043s] Loading query sequences... [207.005s] Masking queries... [142.588s] Building query seed set... [0.625034s] Algorithm: Double-indexed Building query histograms... [7.1858s] Allocating buffers... [0.004832s] Loading reference sequences... [48.9048s] Masking reference... [61.6258s] Building reference histograms... [11.5443s] Allocating buffers... [0.000124s] Initializing temporary storage... [0.004673s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.7367s] Building query index... [8.28533s] Building seed filter... [1.13536s] Searching alignments... [254.718s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.1212s] Building query index... [9.17841s] Building seed filter... [1.15398s] Searching alignments... [230.013s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.7797s] Building query index... [9.4124s] Building seed filter... [1.15517s] Searching alignments... [203.025s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.7705s] Building query index... [8.26031s] Building seed filter... [1.1265s] Searching alignments... [203.629s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.3722s] Building query index... [7.35196s] Building seed filter... [1.09198s] Searching alignments... [151.365s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 1. Building reference index... [22.0108s] Building query index... [8.16887s] Building seed filter... [1.11497s] Searching alignments... [148.396s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.4771s] Building query index... [8.40331s] Building seed filter... [1.1626s] Searching alignments... [155.394s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.4214s] Building query index... [7.50447s] Building seed filter... [1.13528s] Searching alignments... [145.126s] Deallocating buffers... [0.125176s] Opening temporary output file... [0.001326s] Computing alignments... [750.731s] Deallocating reference... [0.079603s] Loading reference sequences... [557.27s] Masking reference... [61.9702s] Building reference histograms... [10.9731s] Allocating buffers... [0.00012s] Initializing temporary storage... [0.004923s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.6517s] Building query index... [8.25256s] Building seed filter... [1.16884s] Searching alignments... [220.707s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.0382s] Building query index... [9.18254s] Building seed filter... [1.19192s] Searching alignments... [199.669s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 2. Building reference index... [23.0062s] Building query index... [10.8027s] Building seed filter... [1.19542s] Searching alignments... [187.158s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.6558s] Building query index... [8.33201s] Building seed filter... [1.15428s] Searching alignments... [178.774s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.1615s] Building query index... [7.36051s] Building seed filter... [1.11115s] Searching alignments... [137.019s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 1. Building reference index... [22.0424s] Building query index... [8.31626s] Building seed filter... [1.13108s] Searching alignments... [133.762s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.7425s] Building query index... [8.38266s] Building seed filter... [1.12492s] Searching alignments... [136.193s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.4376s] Building query index... [7.49779s] Building seed filter... [1.09966s] Searching alignments... [131.414s] Deallocating buffers... [0.122549s] Opening temporary output file... [0.00123s] Computing alignments... [659.372s] Deallocating reference... [0.072965s] Loading reference sequences... [546.18s] Masking reference... [62.0255s] Building reference histograms... [11.6589s] Allocating buffers... [0.000129s] Initializing temporary storage... [0.005276s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.551s] Building query index... [8.24633s] Building seed filter... [1.1226s] Searching alignments... [237.133s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 1. Building reference index... [22.1162s] Building query index... [9.18684s] Building seed filter... [1.19311s] Searching alignments... [212.224s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.5667s] Building query index... [9.39328s] Building seed filter... [1.17221s] Searching alignments... [187.077s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.5714s] Building query index... [8.28186s] Building seed filter... [1.17846s] Searching alignments... [191.065s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.0468s] Building query index... [7.43007s] Building seed filter... [1.12495s] Searching alignments... [140.799s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 1. Building reference index... [21.9343s] Building query index... [8.2068s] Building seed filter... [1.11012s] Searching alignments... [137.635s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.3881s] Building query index... [8.42933s] Building seed filter... [1.11492s] Searching alignments... [145.069s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.3645s] Building query index... [7.43056s] Building seed filter... [1.10515s] Searching alignments... [132.993s] Deallocating buffers... [0.117701s] Opening temporary output file... [0.00137s] Computing alignments... [707.482s] Deallocating reference... [0.072027s] Loading reference sequences... [502.639s] Masking reference... [61.9058s] Building reference histograms... [10.9548s] Allocating buffers... [0.000126s] Initializing temporary storage... [0.00515s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.5106s] Building query index... [8.19178s] Building seed filter... [1.12816s] Searching alignments... [252.851s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.2426s] Building query index... [9.10326s] Building seed filter... [1.1508s] Searching alignments... [226.144s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 2. Building reference index... [22.7037s] Building query index... [9.38791s] Building seed filter... [1.18082s] Searching alignments... [194.467s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.6834s] Building query index... [8.36286s] Building seed filter... [1.17968s] Searching alignments... [200.764s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.2625s] Building query index... [7.41106s] Building seed filter... [1.14182s] Searching alignments... [148.476s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 1. Building reference index... [21.9972s] Building query index... [8.20818s] Building seed filter... [1.12732s] Searching alignments... [146.095s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.5776s] Building query index... [8.48482s] Building seed filter... [1.13124s] Searching alignments... [153.364s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.5165s] Building query index... [7.4069s] Building seed filter... [1.09931s] Searching alignments... [139.556s] Deallocating buffers... [0.124539s] Opening temporary output file... [0.001255s] Computing alignments... [747.398s] Deallocating reference... [0.064843s] Loading reference sequences... [498.891s] Masking reference... [62.344s] Building reference histograms... [11.6264s] Allocating buffers... [0.00013s] Initializing temporary storage... [0.004785s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.54s] Building query index... [8.1981s] Building seed filter... [1.20103s] Searching alignments... [227.228s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.0264s] Building query index... [9.15294s] Building seed filter... [1.20859s] Searching alignments... [208.032s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.7465s] Building query index... [9.41595s] Building seed filter... [1.18514s] Searching alignments... [190.187s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.592s] Building query index... [8.3497s] Building seed filter... [1.17632s] Searching alignments... [184.681s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.1955s] Building query index... [7.37011s] Building seed filter... [1.14226s] Searching alignments... [141.53s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 1. Building reference index... [21.9485s] Building query index... [8.17099s] Building seed filter... [1.11589s] Searching alignments... [138.739s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.4659s] Building query index... [8.4162s] Building seed filter... [1.17483s] Searching alignments... [139.264s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.4715s] Building query index... [7.47257s] Building seed filter... [1.11904s] Searching alignments... [134.378s] Deallocating buffers... [0.126183s] Opening temporary output file... [0.001173s] Computing alignments... [681.854s] Deallocating reference... [0.067545s] Loading reference sequences... [213.448s] Masking reference... [22.8422s] Building reference histograms... [4.0918s] Allocating buffers... [0.000152s] Initializing temporary storage... [0.004492s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.13955s] Building query index... [8.16214s] Building seed filter... [0.672745s] Searching alignments... [108.317s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.07627s] Building query index... [9.15351s] Building seed filter... [0.695255s] Searching alignments... [96.1776s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.2958s] Building query index... [9.38946s] Building seed filter... [0.704758s] Searching alignments... [86.1929s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.30495s] Building query index... [8.35893s] Building seed filter... [0.678616s] Searching alignments... [85.3258s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 0. Building reference index... [6.99166s] Building query index... [7.33569s] Building seed filter... [0.647825s] Searching alignments... [64.098s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 1. Building reference index... [8.07177s] Building query index... [8.19276s] Building seed filter... [0.662762s] Searching alignments... [62.5212s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.27126s] Building query index... [8.3779s] Building seed filter... [0.670191s] Searching alignments... [64.4788s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.08286s] Building query index... [7.45749s] Building seed filter... [0.658828s] Searching alignments... [61.0412s] Deallocating buffers... [0.050213s] Opening temporary output file... [0.00319s] Computing alignments... [320.21s] Deallocating reference... [0.030014s] Loading reference sequences... [0.025007s] Deallocating buffers... [0.036631s] Joining output blocks... [220.776s] Deallocating queries... [0.088633s] Loading query sequences... [33.0899s] Masking queries... [23.2343s] Building query seed set... [7e-06s] Building query histograms... [1.215s] Allocating buffers... [0.00095s] Loading reference sequences... [46.1838s] Masking reference... [63.2603s] Building reference histograms... [11.0052s] Allocating buffers... [0.000174s] Initializing temporary storage... [0.00461s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.6151s] Building query index... [1.35398s] Building seed filter... [0.863928s] Searching alignments... [41.5516s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.2069s] Building query index... [1.47783s] Building seed filter... [0.906839s] Searching alignments... [37.6885s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.8511s] Building query index... [1.5293s] Building seed filter... [0.940313s] Searching alignments... [33.5523s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.6865s] Building query index... [1.35363s] Building seed filter... [0.950634s] Searching alignments... [33.8377s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.1778s] Building query index... [1.21503s] Building seed filter... [0.885995s] Searching alignments... [26.3446s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 1. Building reference index... [21.8912s] Building query index... [1.33861s] Building seed filter... [0.876394s] Searching alignments... [25.971s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.5164s] Building query index... [1.38111s] Building seed filter... [0.89581s] Searching alignments... [26.7427s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.3806s] Building query index... [1.22707s] Building seed filter... [0.890028s] Searching alignments... [24.575s] Deallocating buffers... [0.119529s] Opening temporary output file... [0.001216s] Computing alignments... [123.48s] Deallocating reference... [0.078358s] Loading reference sequences... [537.128s] Masking reference... [62.1804s] Building reference histograms... [11.1428s] Allocating buffers... [0.000181s] Initializing temporary storage... [0.00537s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.7069s] Building query index... [1.34878s] Building seed filter... [0.854979s] Searching alignments... [35.8094s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.0177s] Building query index... [1.46887s] Building seed filter... [0.90931s] Searching alignments... [33.1662s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.6862s] Building query index... [1.5099s] Building seed filter... [0.95886s] Searching alignments... [30.938s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.5892s] Building query index... [1.3432s] Building seed filter... [0.91075s] Searching alignments... [29.9616s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.1557s] Building query index... [1.21719s] Building seed filter... [0.863391s] Searching alignments... [23.2878s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 1. Building reference index... [21.9464s] Building query index... [1.34281s] Building seed filter... [0.868643s] Searching alignments... [23.1264s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.565s] Building query index... [1.38103s] Building seed filter... [0.90018s] Searching alignments... [23.2986s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.5039s] Building query index... [1.21944s] Building seed filter... [0.867652s] Searching alignments... [22.985s] Deallocating buffers... [0.122606s] Opening temporary output file... [0.000626s] Computing alignments... [108.098s] Deallocating reference... [0.073523s] Loading reference sequences... [539.417s] Masking reference... [61.8312s] Building reference histograms... [11.2734s] Allocating buffers... [0.000196s] Initializing temporary storage... [0.004641s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.7028s] Building query index... [1.34193s] Building seed filter... [0.865381s] Searching alignments... [38.6923s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 1. Building reference index... [22.0542s] Building query index... [1.49631s] Building seed filter... [0.8942s] Searching alignments... [34.8409s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.6315s] Building query index... [1.52007s] Building seed filter... [0.893594s] Searching alignments... [31.0639s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.5728s] Building query index... [1.35271s] Building seed filter... [0.922319s] Searching alignments... [31.3364s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.1179s] Building query index... [1.21547s] Building seed filter... [0.889294s] Searching alignments... [24.0562s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 1. Building reference index... [21.9027s] Building query index... [1.36332s] Building seed filter... [0.857208s] Searching alignments... [23.7567s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.5174s] Building query index... [1.37498s] Building seed filter... [0.86927s] Searching alignments... [24.6798s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.5083s] Building query index... [1.22135s] Building seed filter... [0.84688s] Searching alignments... [23.3708s] Deallocating buffers... [0.124916s] Opening temporary output file... [0.001214s] Computing alignments... [114.719s] Deallocating reference... [0.090416s] Loading reference sequences... [507.405s] Masking reference... [61.7966s] Building reference histograms... [10.9211s] Allocating buffers... [0.000173s] Initializing temporary storage... [0.005122s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.7346s] Building query index... [1.329s] Building seed filter... [0.886728s] Searching alignments... [40.7408s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.29s] Building query index... [1.47813s] Building seed filter... [0.932326s] Searching alignments... [37.2417s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 2. Building reference index... [22.739s] Building query index... [1.55171s] Building seed filter... [0.905696s] Searching alignments... [32.1813s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.634s] Building query index... [1.3536s] Building seed filter... [0.932975s] Searching alignments... [32.9616s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.1674s] Building query index... [1.21782s] Building seed filter... [0.891182s] Searching alignments... [25.605s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 1. Building reference index... [22.1337s] Building query index... [1.34793s] Building seed filter... [0.907519s] Searching alignments... [24.9587s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.5444s] Building query index... [1.45411s] Building seed filter... [0.90465s] Searching alignments... [26.3276s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.4191s] Building query index... [1.22239s] Building seed filter... [0.852749s] Searching alignments... [24.0948s] Deallocating buffers... [0.122288s] Opening temporary output file... [0.000687s] Computing alignments... [121.738s] Deallocating reference... [0.068149s] Loading reference sequences... [493.478s] Masking reference... [62.1446s] Building reference histograms... [10.9586s] Allocating buffers... [0.000191s] Initializing temporary storage... [0.005681s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.6127s] Building query index... [1.32484s] Building seed filter... [0.862527s] Searching alignments... [37.4889s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.4421s] Building query index... [1.47601s] Building seed filter... [0.884313s] Searching alignments... [34.4034s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.743s] Building query index... [1.51861s] Building seed filter... [0.882676s] Searching alignments... [31.4427s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.6701s] Building query index... [1.38516s] Building seed filter... [0.899346s] Searching alignments... [31.0912s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.2787s] Building query index... [1.21113s] Building seed filter... [0.907467s] Searching alignments... [24.4917s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 1. Building reference index... [21.9587s] Building query index... [1.34875s] Building seed filter... [0.868943s] Searching alignments... [24.1222s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.5342s] Building query index... [1.41003s] Building seed filter... [0.872173s] Searching alignments... [23.9161s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.418s] Building query index... [1.21782s] Building seed filter... [0.850756s] Searching alignments... [23.2185s] Deallocating buffers... [0.118219s] Opening temporary output file... [0.001405s] Computing alignments... [112.948s] Deallocating reference... [0.065762s] Loading reference sequences... [217.288s] Masking reference... [22.776s] Building reference histograms... [4.1212s] Allocating buffers... [0.000187s] Initializing temporary storage... [0.005113s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.03397s] Building query index... [1.33018s] Building seed filter... [0.41242s] Searching alignments... [17.2932s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.08109s] Building query index... [1.47705s] Building seed filter... [0.422577s] Searching alignments... [15.7647s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.31225s] Building query index... [1.51718s] Building seed filter... [0.416943s] Searching alignments... [14.1972s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.18492s] Building query index... [1.36514s] Building seed filter... [0.413197s] Searching alignments... [14.1013s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 0. Building reference index... [7.17011s] Building query index... [1.22245s] Building seed filter... [0.403099s] Searching alignments... [11.4233s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 1. Building reference index... [7.98132s] Building query index... [1.34197s] Building seed filter... [0.411552s] Searching alignments... [10.6352s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.24815s] Building query index... [1.3786s] Building seed filter... [0.387959s] Searching alignments... [10.8879s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.10688s] Building query index... [1.24373s] Building seed filter... [0.387908s] Searching alignments... [10.254s] Deallocating buffers... [0.045295s] Opening temporary output file... [0.001227s] Computing alignments... [55.2619s] Deallocating reference... [0.028957s] Loading reference sequences... [0.000463s] Deallocating buffers... [0.005318s] Joining output blocks... [35.4889s] Deallocating queries... [0.015134s] Loading query sequences... [2.1e-05s] Closing the input file... [3.5e-05s] Closing the output file... [4.01408s] Closing the database file... [4e-05s] Deallocating taxonomy... [1.4e-05s] Total time = 21966.4s Reported 545635796 pairwise alignments, 545647133 HSPs. 21244914 queries aligned. diamond v0.9.26.127 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.044525s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.187179s] Opening the output file... [0.000477s] Loading query sequences... [216.735s] Masking queries... [148.651s] Building query seed set... [0.891784s] Algorithm: Double-indexed Building query histograms... [7.10165s] Allocating buffers... [0.002175s] Loading reference sequences... [48.6575s] Masking reference... [62.2059s] Building reference histograms... [12.3754s] Allocating buffers... [0.000135s] Initializing temporary storage... [0.005197s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.6181s] Building query index... [8.21244s] Building seed filter... [1.15366s] Searching alignments... [239.019s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.3143s] Building query index... [9.0735s] Building seed filter... [1.19804s] Searching alignments... [214.767s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.8651s] Building query index... [9.39635s] Building seed filter... [1.18093s] Searching alignments... [190.832s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.6924s] Building query index... [8.27259s] Building seed filter... [1.18333s] Searching alignments... [190.779s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.3155s] Building query index... [7.31408s] Building seed filter... [1.14665s] Searching alignments... [142.933s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 1. Building reference index... [21.9045s] Building query index... [8.10936s] Building seed filter... [1.12931s] Searching alignments... [139.007s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.5705s] Building query index... [8.31007s] Building seed filter... [1.13485s] Searching alignments... [145.633s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.6215s] Building query index... [7.48561s] Building seed filter... [1.13437s] Searching alignments... [135.405s] Deallocating buffers... [0.125853s] Opening temporary output file... [0.000634s] Computing alignments... [668.747s] Deallocating reference... [0.080387s] Loading reference sequences... [531.976s] Masking reference... [61.7931s] Building reference histograms... [11.7703s] Allocating buffers... [0.000128s] Initializing temporary storage... [0.00556s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.6485s] Building query index... [8.1562s] Building seed filter... [1.12814s] Searching alignments... [207.283s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.0932s] Building query index... [9.04594s] Building seed filter... [1.16331s] Searching alignments... [187.091s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.8847s] Building query index... [9.25684s] Building seed filter... [1.12084s] Searching alignments... [173.986s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.7628s] Building query index... [8.23616s] Building seed filter... [1.17055s] Searching alignments... [168.354s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.2849s] Building query index... [7.28313s] Building seed filter... [1.1702s] Searching alignments... [129.324s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 1. Building reference index... [21.885s] Building query index... [8.08528s] Building seed filter... [1.13631s] Searching alignments... [124.933s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.4584s] Building query index... [8.34644s] Building seed filter... [1.11876s] Searching alignments... [125.918s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.3724s] Building query index... [7.45438s] Building seed filter... [1.11632s] Searching alignments... [122.92s] Deallocating buffers... [0.139369s] Opening temporary output file... [0.001329s] Computing alignments... [592.962s] Deallocating reference... [0.077389s] Loading reference sequences... [537.242s] Masking reference... [62.4393s] Building reference histograms... [11.5104s] Allocating buffers... [0.000127s] Initializing temporary storage... [0.005005s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.5258s] Building query index... [8.20771s] Building seed filter... [1.17028s] Searching alignments... [222.379s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 1. Building reference index... [22.3351s] Building query index... [9.10381s] Building seed filter... [1.15189s] Searching alignments... [199.163s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.6236s] Building query index... [9.3s] Building seed filter... [1.13015s] Searching alignments... [175.873s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.5674s] Building query index... [8.2376s] Building seed filter... [1.13759s] Searching alignments... [178.115s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.1726s] Building query index... [7.30377s] Building seed filter... [1.13878s] Searching alignments... [131.744s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 1. Building reference index... [21.7909s] Building query index... [8.15735s] Building seed filter... [1.11629s] Searching alignments... [127.735s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.3987s] Building query index... [8.35788s] Building seed filter... [1.11511s] Searching alignments... [135.363s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.2807s] Building query index... [7.40318s] Building seed filter... [1.1135s] Searching alignments... [124.707s] Deallocating buffers... [0.124987s] Opening temporary output file... [0.001336s] Computing alignments... [629.61s] Deallocating reference... [0.073303s] Loading reference sequences... [494.819s] Masking reference... [61.7317s] Building reference histograms... [11.7673s] Allocating buffers... [0.000126s] Initializing temporary storage... [0.004459s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.7716s] Building query index... [8.18641s] Building seed filter... [1.18963s] Searching alignments... [238.685s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.2236s] Building query index... [9.07116s] Building seed filter... [1.14851s] Searching alignments... [211.132s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 2. Building reference index... [22.8597s] Building query index... [9.26241s] Building seed filter... [1.14092s] Searching alignments... [182.538s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.7452s] Building query index... [8.1916s] Building seed filter... [1.1744s] Searching alignments... [187.364s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.4507s] Building query index... [7.2669s] Building seed filter... [1.10549s] Searching alignments... [138.385s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 1. Building reference index... [21.9401s] Building query index... [8.13462s] Building seed filter... [1.1528s] Searching alignments... [136.429s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.6497s] Building query index... [8.26439s] Building seed filter... [1.11903s] Searching alignments... [143.432s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.4556s] Building query index... [7.40404s] Building seed filter... [1.14639s] Searching alignments... [129.358s] Deallocating buffers... [0.125147s] Opening temporary output file... [0.0009s] Computing alignments... [664.804s] Deallocating reference... [0.067762s] Loading reference sequences... [486.67s] Masking reference... [62.3648s] Building reference histograms... [11.5479s] Allocating buffers... [0.000134s] Initializing temporary storage... [0.004954s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.4492s] Building query index... [8.1255s] Building seed filter... [1.18814s] Searching alignments... [212.266s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.0551s] Building query index... [9.02439s] Building seed filter... [1.1814s] Searching alignments... [195.745s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.655s] Building query index... [9.32967s] Building seed filter... [1.17252s] Searching alignments... [179.016s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.6202s] Building query index... [8.21377s] Building seed filter... [1.19342s] Searching alignments... [172.944s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.1867s] Building query index... [7.34906s] Building seed filter... [1.13989s] Searching alignments... [131.075s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 1. Building reference index... [21.9224s] Building query index... [8.13657s] Building seed filter... [1.12713s] Searching alignments... [128.663s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.5738s] Building query index... [8.33755s] Building seed filter... [1.14752s] Searching alignments... [130.345s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.4059s] Building query index... [7.31954s] Building seed filter... [1.12249s] Searching alignments... [125.145s] Deallocating buffers... [0.12184s] Opening temporary output file... [0.002466s] Computing alignments... [602.417s] Deallocating reference... [0.065311s] Loading reference sequences... [212.459s] Masking reference... [22.7759s] Building reference histograms... [4.40833s] Allocating buffers... [0.000151s] Initializing temporary storage... [0.004705s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.11469s] Building query index... [8.06943s] Building seed filter... [0.71428s] Searching alignments... [101.597s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.18152s] Building query index... [9.02459s] Building seed filter... [0.679696s] Searching alignments... [91.0245s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.37221s] Building query index... [9.55029s] Building seed filter... [0.692904s] Searching alignments... [80.3147s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.15023s] Building query index... [8.18229s] Building seed filter... [0.691801s] Searching alignments... [81.1682s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 0. Building reference index... [7.00138s] Building query index... [7.32053s] Building seed filter... [0.660082s] Searching alignments... [60.9155s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 1. Building reference index... [8.01061s] Building query index... [8.14018s] Building seed filter... [0.680437s] Searching alignments... [58.3443s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.3589s] Building query index... [8.34217s] Building seed filter... [0.652894s] Searching alignments... [60.7326s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.08202s] Building query index... [7.34866s] Building seed filter... [0.666515s] Searching alignments... [56.7622s] Deallocating buffers... [0.044431s] Opening temporary output file... [0.002412s] Computing alignments... [289.319s] Deallocating reference... [0.028942s] Loading reference sequences... [0.06027s] Deallocating buffers... [0.040556s] Joining output blocks... [212.561s] Deallocating queries... [0.089233s] Loading query sequences... [26.5073s] Masking queries... [18.1838s] Building query seed set... [8e-06s] Building query histograms... [1.03978s] Allocating buffers... [0.000928s] Loading reference sequences... [46.9525s] Masking reference... [63.0305s] Building reference histograms... [10.807s] Allocating buffers... [0.000172s] Initializing temporary storage... [0.00492s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.6487s] Building query index... [1.08377s] Building seed filter... [0.833644s] Searching alignments... [32.2921s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.1155s] Building query index... [1.19344s] Building seed filter... [0.917611s] Searching alignments... [29.8524s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 2. Building reference index... [23.136s] Building query index... [1.25136s] Building seed filter... [0.927464s] Searching alignments... [26.5913s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.6899s] Building query index... [1.09847s] Building seed filter... [0.908569s] Searching alignments... [26.4819s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.2384s] Building query index... [0.976124s] Building seed filter... [0.894908s] Searching alignments... [20.4115s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 1. Building reference index... [22.161s] Building query index... [1.14014s] Building seed filter... [0.860371s] Searching alignments... [20.5699s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.5602s] Building query index... [1.1322s] Building seed filter... [0.846907s] Searching alignments... [21.0577s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.3388s] Building query index... [0.985322s] Building seed filter... [0.870087s] Searching alignments... [19.6653s] Deallocating buffers... [0.119154s] Opening temporary output file... [0.001448s] Computing alignments... [93.6312s] Deallocating reference... [0.077504s] Loading reference sequences... [543.206s] Masking reference... [61.8801s] Building reference histograms... [11.7807s] Allocating buffers... [0.000181s] Initializing temporary storage... [0.005212s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.5999s] Building query index... [1.08122s] Building seed filter... [0.843327s] Searching alignments... [28.6852s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.1154s] Building query index... [1.20386s] Building seed filter... [0.867274s] Searching alignments... [25.916s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.6727s] Building query index... [1.23001s] Building seed filter... [0.866778s] Searching alignments... [24.3674s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.5596s] Building query index... [1.10241s] Building seed filter... [0.847694s] Searching alignments... [23.8262s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.2207s] Building query index... [0.968832s] Building seed filter... [0.848068s] Searching alignments... [18.8514s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 1. Building reference index... [21.813s] Building query index... [1.24549s] Building seed filter... [0.869932s] Searching alignments... [18.3815s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.4706s] Building query index... [1.26562s] Building seed filter... [0.840496s] Searching alignments... [18.5732s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.383s] Building query index... [0.98061s] Building seed filter... [0.841078s] Searching alignments... [17.8159s] Deallocating buffers... [0.109489s] Opening temporary output file... [0.001112s] Computing alignments... [81.7041s] Deallocating reference... [0.073004s] Loading reference sequences... [536.823s] Masking reference... [61.9593s] Building reference histograms... [10.8849s] Allocating buffers... [0.000171s] Initializing temporary storage... [0.004662s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.5676s] Building query index... [1.06669s] Building seed filter... [0.832387s] Searching alignments... [30.4012s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 1. Building reference index... [22.0384s] Building query index... [1.21892s] Building seed filter... [0.916698s] Searching alignments... [27.8053s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.861s] Building query index... [1.22386s] Building seed filter... [0.85289s] Searching alignments... [24.8873s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.6893s] Building query index... [1.16195s] Building seed filter... [0.877449s] Searching alignments... [25.0164s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.1337s] Building query index... [0.979795s] Building seed filter... [0.828608s] Searching alignments... [19.1352s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 1. Building reference index... [21.8409s] Building query index... [1.23765s] Building seed filter... [0.864033s] Searching alignments... [18.8396s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.604s] Building query index... [1.09696s] Building seed filter... [0.870938s] Searching alignments... [19.7646s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.5498s] Building query index... [0.992554s] Building seed filter... [0.85341s] Searching alignments... [18.3797s] Deallocating buffers... [0.113541s] Opening temporary output file... [0.001345s] Computing alignments... [87.7122s] Deallocating reference... [0.071751s] Loading reference sequences... [39.1305s] Masking reference... [63.2078s] Building reference histograms... [12.0102s] Allocating buffers... [0.000177s] Initializing temporary storage... [0.005107s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.7633s] Building query index... [1.08979s] Building seed filter... [0.856938s] Searching alignments... [32.0211s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.0837s] Building query index... [1.18984s] Building seed filter... [0.85835s] Searching alignments... [29.7925s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 2. Building reference index... [22.8335s] Building query index... [1.22301s] Building seed filter... [0.888913s] Searching alignments... [25.9287s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.6382s] Building query index... [1.10143s] Building seed filter... [0.878152s] Searching alignments... [26.5812s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.4645s] Building query index... [0.979859s] Building seed filter... [0.859107s] Searching alignments... [19.9032s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 1. Building reference index... [21.9431s] Building query index... [1.09064s] Building seed filter... [0.827506s] Searching alignments... [20.0524s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.5717s] Building query index... [1.1126s] Building seed filter... [0.842889s] Searching alignments... [20.9792s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.3973s] Building query index... [0.993783s] Building seed filter... [0.863275s] Searching alignments... [19.0136s] Deallocating buffers... [0.113255s] Opening temporary output file... [0.001525s] Computing alignments... [93.6021s] Deallocating reference... [0.066547s] Loading reference sequences... [39.2756s] Masking reference... [62.14s] Building reference histograms... [10.9699s] Allocating buffers... [0.000176s] Initializing temporary storage... [0.004785s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.6474s] Building query index... [1.09859s] Building seed filter... [0.856589s] Searching alignments... [29.4346s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.1588s] Building query index... [1.20409s] Building seed filter... [0.849965s] Searching alignments... [26.9998s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.78s] Building query index... [1.21515s] Building seed filter... [0.905259s] Searching alignments... [25.5057s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.5851s] Building query index... [1.10625s] Building seed filter... [0.903008s] Searching alignments... [24.598s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.3303s] Building query index... [0.984872s] Building seed filter... [0.86166s] Searching alignments... [19.2529s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 1. Building reference index... [21.8156s] Building query index... [1.0804s] Building seed filter... [0.88495s] Searching alignments... [19.099s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.8012s] Building query index... [1.12902s] Building seed filter... [0.867887s] Searching alignments... [20.1678s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.5697s] Building query index... [0.99523s] Building seed filter... [0.843873s] Searching alignments... [18.32s] Deallocating buffers... [0.11208s] Opening temporary output file... [0.001792s] Computing alignments... [84.7192s] Deallocating reference... [0.062499s] Loading reference sequences... [16.3779s] Masking reference... [23.1616s] Building reference histograms... [4.43702s] Allocating buffers... [0.000173s] Initializing temporary storage... [0.003903s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.05509s] Building query index... [1.09077s] Building seed filter... [0.391633s] Searching alignments... [13.6257s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.05315s] Building query index... [1.19834s] Building seed filter... [0.390427s] Searching alignments... [12.6651s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.39055s] Building query index... [1.23179s] Building seed filter... [0.384022s] Searching alignments... [11.3183s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.12894s] Building query index... [1.10377s] Building seed filter... [0.390307s] Searching alignments... [11.2511s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 0. Building reference index... [7.02105s] Building query index... [0.994632s] Building seed filter... [0.37433s] Searching alignments... [8.68823s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 1. Building reference index... [7.99393s] Building query index... [1.0922s] Building seed filter... [0.395012s] Searching alignments... [8.85385s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.22796s] Building query index... [1.13265s] Building seed filter... [0.383786s] Searching alignments... [8.58364s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.16648s] Building query index... [1.00534s] Building seed filter... [0.37807s] Searching alignments... [8.13804s] Deallocating buffers... [0.045967s] Opening temporary output file... [0.001216s] Computing alignments... [41.7722s] Deallocating reference... [0.028061s] Loading reference sequences... [0.003694s] Deallocating buffers... [0.004025s] Joining output blocks... [26.815s] Deallocating queries... [0.012363s] Loading query sequences... [1.9e-05s] Closing the input file... [3.7e-05s] Closing the output file... [4.51047s] Closing the database file... [2.5e-05s] Deallocating taxonomy... [6e-06s] Total time = 19443s Reported 521824297 pairwise alignments, 521833471 HSPs. 19821201 queries aligned. diamond v0.9.26.127 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.04584s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.11565s] Opening the output file... [0.000458s] Loading query sequences... [205.511s] Masking queries... [130.322s] Building query seed set... [0.691308s] Algorithm: Double-indexed Building query histograms... [8.2363s] Allocating buffers... [0.002867s] Loading reference sequences... [46.4592s] Masking reference... [61.6796s] Building reference histograms... [12.028s] Allocating buffers... [0.000124s] Initializing temporary storage... [0.004988s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.8073s] Building query index... [8.27957s] Building seed filter... [1.08066s] Searching alignments... [532.221s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.1351s] Building query index... [9.10942s] Building seed filter... [1.14172s] Searching alignments... [466.533s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.9608s] Building query index... [9.35895s] Building seed filter... [1.13327s] Searching alignments... [406.722s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.6555s] Building query index... [8.18219s] Building seed filter... [1.13325s] Searching alignments... [407.485s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.2353s] Building query index... [7.40246s] Building seed filter... [1.08236s] Searching alignments... [297.724s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 1. Building reference index... [22.291s] Building query index... [8.28878s] Building seed filter... [1.11527s] Searching alignments... [288.18s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.5159s] Building query index... [8.48071s] Building seed filter... [1.09212s] Searching alignments... [307.409s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.3759s] Building query index... [7.52798s] Building seed filter... [1.12369s] Searching alignments... [280.206s] Deallocating buffers... [0.119126s] Opening temporary output file... [0.001846s] Computing alignments... [1821.09s] Deallocating reference... [0.081625s] Loading reference sequences... [565.733s] Masking reference... [62.7763s] Building reference histograms... [11.6233s] Allocating buffers... [0.000132s] Initializing temporary storage... [0.00475s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.6058s] Building query index... [8.152s] Building seed filter... [1.17886s] Searching alignments... [437.215s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.1927s] Building query index... [9.1723s] Building seed filter... [1.13577s] Searching alignments... [388.455s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.6232s] Building query index... [9.44644s] Building seed filter... [1.14157s] Searching alignments... [357.029s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.6202s] Building query index... [8.24301s] Building seed filter... [1.20643s] Searching alignments... [340.912s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.1531s] Building query index... [7.41323s] Building seed filter... [1.19416s] Searching alignments... [261.595s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 1. Building reference index... [22.0421s] Building query index... [8.22404s] Building seed filter... [1.1374s] Searching alignments... [251.485s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.5895s] Building query index... [8.55412s] Building seed filter... [1.1744s] Searching alignments... [255.436s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.3757s] Building query index... [7.48652s] Building seed filter... [1.13957s] Searching alignments... [244.314s] Deallocating buffers... [0.113948s] Opening temporary output file... [0.002152s] Computing alignments... [1593.46s] Deallocating reference... [0.07395s] Loading reference sequences... [574.902s] Masking reference... [61.6816s] Building reference histograms... [11.2991s] Allocating buffers... [0.000132s] Initializing temporary storage... [0.004802s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.4861s] Building query index... [8.12545s] Building seed filter... [1.16463s] Searching alignments... [490.371s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 1. Building reference index... [22.0503s] Building query index... [9.11954s] Building seed filter... [1.13102s] Searching alignments... [422.513s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.5807s] Building query index... [9.35812s] Building seed filter... [1.14913s] Searching alignments... [365.757s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.5146s] Building query index... [8.21077s] Building seed filter... [1.13044s] Searching alignments... [375.318s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.0933s] Building query index... [7.44112s] Building seed filter... [1.09958s] Searching alignments... [272.933s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 1. Building reference index... [22.0233s] Building query index... [8.2107s] Building seed filter... [1.12837s] Searching alignments... [263.12s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.5131s] Building query index... [8.51248s] Building seed filter... [1.10006s] Searching alignments... [283.349s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.3633s] Building query index... [7.49978s] Building seed filter... [1.09415s] Searching alignments... [254.252s] Deallocating buffers... [0.12654s] Opening temporary output file... [0.00125s] Computing alignments... [1716.63s] Deallocating reference... [0.075206s] Loading reference sequences... [544.403s] Masking reference... [61.5373s] Building reference histograms... [11.5637s] Allocating buffers... [0.000139s] Initializing temporary storage... [0.004215s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.597s] Building query index... [8.18309s] Building seed filter... [1.10129s] Searching alignments... [528.328s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.3323s] Building query index... [9.15743s] Building seed filter... [1.11318s] Searching alignments... [452.8s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 2. Building reference index... [22.8727s] Building query index... [9.30827s] Building seed filter... [1.18651s] Searching alignments... [383.413s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.6187s] Building query index... [8.28631s] Building seed filter... [1.16897s] Searching alignments... [397.48s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.3218s] Building query index... [7.42381s] Building seed filter... [1.12032s] Searching alignments... [289.315s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 1. Building reference index... [22.088s] Building query index... [8.24536s] Building seed filter... [1.10509s] Searching alignments... [278.808s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.6859s] Building query index... [8.53736s] Building seed filter... [1.0968s] Searching alignments... [302.52s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.4173s] Building query index... [7.45007s] Building seed filter... [1.10494s] Searching alignments... [264.585s] Deallocating buffers... [0.121704s] Opening temporary output file... [0.000646s] Computing alignments... [1856.98s] Deallocating reference... [0.065003s] Loading reference sequences... [566.426s] Masking reference... [61.6031s] Building reference histograms... [11.4536s] Allocating buffers... [0.000125s] Initializing temporary storage... [0.004726s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.5844s] Building query index... [8.12364s] Building seed filter... [1.16427s] Searching alignments... [444.513s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.0981s] Building query index... [9.17757s] Building seed filter... [1.14267s] Searching alignments... [404.126s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.7893s] Building query index... [9.38226s] Building seed filter... [1.1581s] Searching alignments... [371.829s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.633s] Building query index... [8.21795s] Building seed filter... [1.14585s] Searching alignments... [350.72s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.1677s] Building query index... [7.4003s] Building seed filter... [1.09946s] Searching alignments... [268.117s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 1. Building reference index... [21.8982s] Building query index... [8.31552s] Building seed filter... [1.0873s] Searching alignments... [258.19s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.4776s] Building query index... [8.49807s] Building seed filter... [1.14244s] Searching alignments... [265.154s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.3719s] Building query index... [7.48317s] Building seed filter... [1.1106s] Searching alignments... [252.033s] Deallocating buffers... [0.123524s] Opening temporary output file... [0.001228s] Computing alignments... [1647.26s] Deallocating reference... [0.062927s] Loading reference sequences... [252.069s] Masking reference... [22.9008s] Building reference histograms... [4.36199s] Allocating buffers... [0.000169s] Initializing temporary storage... [0.00509s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.11131s] Building query index... [8.13726s] Building seed filter... [0.674843s] Searching alignments... [223.462s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.06498s] Building query index... [9.09091s] Building seed filter... [0.674277s] Searching alignments... [192.846s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.28768s] Building query index... [9.35693s] Building seed filter... [0.665123s] Searching alignments... [169.075s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.20595s] Building query index... [8.20871s] Building seed filter... [0.660075s] Searching alignments... [170.339s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 0. Building reference index... [7.04542s] Building query index... [7.38344s] Building seed filter... [0.627003s] Searching alignments... [126.37s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 1. Building reference index... [8.00262s] Building query index... [8.2808s] Building seed filter... [0.624296s] Searching alignments... [120.53s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.21824s] Building query index... [8.40912s] Building seed filter... [0.622485s] Searching alignments... [124.255s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.08587s] Building query index... [7.55225s] Building seed filter... [0.629871s] Searching alignments... [114.957s] Deallocating buffers... [0.046442s] Opening temporary output file... [0.002265s] Computing alignments... [755.018s] Deallocating reference... [0.037852s] Loading reference sequences... [5.6e-05s] Deallocating buffers... [0.03983s] Joining output blocks... [464.13s] Deallocating queries... [0.088789s] Loading query sequences... [15.1199s] Masking queries... [9.40725s] Building query seed set... [7e-06s] Building query histograms... [0.632174s] Allocating buffers... [0.00113s] Loading reference sequences... [694.896s] Masking reference... [63.0631s] Building reference histograms... [11.2558s] Allocating buffers... [0.000191s] Initializing temporary storage... [0.004951s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.8305s] Building query index... [0.704842s] Building seed filter... [0.81963s] Searching alignments... [40.4292s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.0651s] Building query index... [0.765873s] Building seed filter... [0.845884s] Searching alignments... [36.5628s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.7202s] Building query index... [0.781068s] Building seed filter... [0.849608s] Searching alignments... [31.3951s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.5546s] Building query index... [0.711773s] Building seed filter... [0.865692s] Searching alignments... [31.8297s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.2371s] Building query index... [0.644685s] Building seed filter... [0.863866s] Searching alignments... [24.2556s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 1. Building reference index... [21.8687s] Building query index... [0.75542s] Building seed filter... [0.842272s] Searching alignments... [23.1636s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.6908s] Building query index... [0.727883s] Building seed filter... [0.827944s] Searching alignments... [25.2877s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.509s] Building query index... [0.655892s] Building seed filter... [0.835055s] Searching alignments... [23.0862s] Deallocating buffers... [0.120118s] Opening temporary output file... [0.001303s] Computing alignments... [145.501s] Deallocating reference... [0.089975s] Loading reference sequences... [694.288s] Masking reference... [62.2395s] Building reference histograms... [10.9841s] Allocating buffers... [0.000177s] Initializing temporary storage... [0.005518s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.6195s] Building query index... [0.700331s] Building seed filter... [0.838818s] Searching alignments... [34.2464s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.1832s] Building query index... [0.769377s] Building seed filter... [0.862906s] Searching alignments... [30.4779s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.7065s] Building query index... [0.834401s] Building seed filter... [0.836999s] Searching alignments... [28.5183s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.8312s] Building query index... [0.724421s] Building seed filter... [0.8337s] Searching alignments... [27.4367s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.2144s] Building query index... [0.68132s] Building seed filter... [0.858895s] Searching alignments... [21.0818s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 1. Building reference index... [22.1257s] Building query index... [0.703839s] Building seed filter... [0.813318s] Searching alignments... [20.4929s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.4841s] Building query index... [0.715735s] Building seed filter... [0.822312s] Searching alignments... [20.6466s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.3803s] Building query index... [0.643111s] Building seed filter... [0.845027s] Searching alignments... [20.6046s] Deallocating buffers... [0.116394s] Opening temporary output file... [0.001281s] Computing alignments... [129.883s] Deallocating reference... [0.084227s] Loading reference sequences... [675.449s] Masking reference... [61.7516s] Building reference histograms... [11.2636s] Allocating buffers... [0.000178s] Initializing temporary storage... [0.004891s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.5979s] Building query index... [0.692565s] Building seed filter... [0.817137s] Searching alignments... [37.0835s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 1. Building reference index... [21.9521s] Building query index... [0.763877s] Building seed filter... [0.833004s] Searching alignments... [33.4571s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.781s] Building query index... [0.791003s] Building seed filter... [0.837479s] Searching alignments... [28.6227s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.6626s] Building query index... [0.709632s] Building seed filter... [0.835416s] Searching alignments... [29.1172s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.1096s] Building query index... [0.639194s] Building seed filter... [0.863429s] Searching alignments... [22.0434s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 1. Building reference index... [21.9636s] Building query index... [0.707302s] Building seed filter... [0.839036s] Searching alignments... [21.5538s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.5959s] Building query index... [0.723111s] Building seed filter... [0.865647s] Searching alignments... [23.3632s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.5816s] Building query index... [0.694665s] Building seed filter... [0.866365s] Searching alignments... [20.6324s] Deallocating buffers... [0.125682s] Opening temporary output file... [0.001288s] Computing alignments... [138.049s] Deallocating reference... [0.079992s] Loading reference sequences... [630.732s] Masking reference... [63.0584s] Building reference histograms... [11.2422s] Allocating buffers... [0.00018s] Initializing temporary storage... [0.00524s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.5812s] Building query index... [0.695107s] Building seed filter... [0.823592s] Searching alignments... [39.2677s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.0504s] Building query index... [0.7757s] Building seed filter... [0.867644s] Searching alignments... [35.3248s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 2. Building reference index... [23.0302s] Building query index... [0.78323s] Building seed filter... [0.828711s] Searching alignments... [29.5799s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.7813s] Building query index... [0.753808s] Building seed filter... [0.850024s] Searching alignments... [31.3045s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.1777s] Building query index... [0.79288s] Building seed filter... [0.872638s] Searching alignments... [23.1738s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 1. Building reference index... [21.9282s] Building query index... [0.706778s] Building seed filter... [0.823599s] Searching alignments... [22.8132s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.7768s] Building query index... [0.721071s] Building seed filter... [0.829721s] Searching alignments... [24.5775s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.5738s] Building query index... [0.647698s] Building seed filter... [0.836237s] Searching alignments... [21.7004s] Deallocating buffers... [0.12095s] Opening temporary output file... [0.001393s] Computing alignments... [145.382s] Deallocating reference... [0.086027s] Loading reference sequences... [614.026s] Masking reference... [61.5488s] Building reference histograms... [11.399s] Allocating buffers... [0.000205s] Initializing temporary storage... [0.00465s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.6949s] Building query index... [0.69517s] Building seed filter... [0.830627s] Searching alignments... [34.5698s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.2252s] Building query index... [0.766581s] Building seed filter... [0.855961s] Searching alignments... [31.7509s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 2. Building reference index... [23.2868s] Building query index... [0.848677s] Building seed filter... [0.864637s] Searching alignments... [29.3727s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.7841s] Building query index... [0.70518s] Building seed filter... [0.943001s] Searching alignments... [28.5068s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.2372s] Building query index... [0.633005s] Building seed filter... [0.838948s] Searching alignments... [22.1217s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 1. Building reference index... [21.862s] Building query index... [0.792379s] Building seed filter... [0.887885s] Searching alignments... [21.7574s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.4929s] Building query index... [0.906458s] Building seed filter... [0.860541s] Searching alignments... [21.7106s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.7921s] Building query index... [0.661945s] Building seed filter... [0.832423s] Searching alignments... [20.6621s] Deallocating buffers... [0.124043s] Opening temporary output file... [0.000637s] Computing alignments... [130.838s] Deallocating reference... [0.065493s] Loading reference sequences... [276.367s] Masking reference... [22.9556s] Building reference histograms... [4.12546s] Allocating buffers... [0.000718s] Initializing temporary storage... [0.004317s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.15574s] Building query index... [0.697959s] Building seed filter... [0.351458s] Searching alignments... [17.0707s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.1055s] Building query index... [0.775174s] Building seed filter... [0.350521s] Searching alignments... [15.6479s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.28057s] Building query index... [0.78633s] Building seed filter... [0.359041s] Searching alignments... [14.6049s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.13842s] Building query index... [0.692024s] Building seed filter... [0.361967s] Searching alignments... [13.6865s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 0. Building reference index... [6.98711s] Building query index... [0.63221s] Building seed filter... [0.369474s] Searching alignments... [10.6793s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 1. Building reference index... [8.06438s] Building query index... [0.703557s] Building seed filter... [0.408479s] Searching alignments... [9.77147s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.27428s] Building query index... [0.719298s] Building seed filter... [0.355023s] Searching alignments... [10.4073s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.14052s] Building query index... [0.636741s] Building seed filter... [0.36259s] Searching alignments... [9.60971s] Deallocating buffers... [0.042739s] Opening temporary output file... [0.00172s] Computing alignments... [65.0118s] Deallocating reference... [0.027852s] Loading reference sequences... [3.4e-05s] Deallocating buffers... [0.002373s] Joining output blocks... [35.5952s] Deallocating queries... [0.008035s] Loading query sequences... [1.9e-05s] Closing the input file... [3.2e-05s] Closing the output file... [3.26915s] Closing the database file... [2.2e-05s] Deallocating taxonomy... [7e-06s] Total time = 36464.7s Reported 860520160 pairwise alignments, 860521473 HSPs. 41456188 queries aligned. diamond v0.9.26.127 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.140773s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.292816s] Opening the output file... [0.000393s] Loading query sequences... [215.016s] Masking queries... [133.937s] Building query seed set... [0.769953s] Algorithm: Double-indexed Building query histograms... [7.47024s] Allocating buffers... [0.002595s] Loading reference sequences... [53.8597s] Masking reference... [61.6636s] Building reference histograms... [10.7259s] Allocating buffers... [0.00013s] Initializing temporary storage... [0.004711s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.6655s] Building query index... [8.29762s] Building seed filter... [1.11986s] Searching alignments... [501.609s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.114s] Building query index... [9.09514s] Building seed filter... [1.13113s] Searching alignments... [441.961s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.7219s] Building query index... [9.26801s] Building seed filter... [1.161s] Searching alignments... [382.091s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.5694s] Building query index... [8.2336s] Building seed filter... [1.16468s] Searching alignments... [388.517s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.2076s] Building query index... [7.3455s] Building seed filter... [1.1089s] Searching alignments... [281.319s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 1. Building reference index... [21.9836s] Building query index... [8.20049s] Building seed filter... [1.12654s] Searching alignments... [272.545s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.6688s] Building query index... [8.39506s] Building seed filter... [1.10535s] Searching alignments... [290.507s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.4118s] Building query index... [7.42605s] Building seed filter... [1.09604s] Searching alignments... [265.622s] Deallocating buffers... [0.124093s] Opening temporary output file... [0.001318s] Computing alignments... [1713.01s] Deallocating reference... [0.077651s] Loading reference sequences... [665.541s] Masking reference... [61.7739s] Building reference histograms... [11.6217s] Allocating buffers... [0.000128s] Initializing temporary storage... [0.004827s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.5833s] Building query index... [8.10375s] Building seed filter... [1.11554s] Searching alignments... [417.983s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.1459s] Building query index... [9.06116s] Building seed filter... [1.15165s] Searching alignments... [368.803s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.7197s] Building query index... [9.31069s] Building seed filter... [1.14907s] Searching alignments... [337.656s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.5944s] Building query index... [8.18149s] Building seed filter... [1.15422s] Searching alignments... [321.626s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.1604s] Building query index... [7.34122s] Building seed filter... [1.1532s] Searching alignments... [246.987s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 1. Building reference index... [21.7672s] Building query index... [8.15998s] Building seed filter... [1.11058s] Searching alignments... [237.016s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.6548s] Building query index... [8.36183s] Building seed filter... [1.09671s] Searching alignments... [238.477s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.3572s] Building query index... [7.39666s] Building seed filter... [1.14341s] Searching alignments... [232.881s] Deallocating buffers... [0.129399s] Opening temporary output file... [0.001384s] Computing alignments... [1485.96s] Deallocating reference... [0.073591s] Loading reference sequences... [562.312s] Masking reference... [61.5464s] Building reference histograms... [11.005s] Allocating buffers... [0.00013s] Initializing temporary storage... [0.004562s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.6625s] Building query index... [8.08717s] Building seed filter... [1.16241s] Searching alignments... [458.896s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 1. Building reference index... [22.0143s] Building query index... [9.02957s] Building seed filter... [1.15608s] Searching alignments... [403.969s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.7086s] Building query index... [9.33054s] Building seed filter... [1.11676s] Searching alignments... [344.916s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.4625s] Building query index... [8.47483s] Building seed filter... [1.16651s] Searching alignments... [351.778s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.0974s] Building query index... [7.3426s] Building seed filter... [1.10747s] Searching alignments... [260.115s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 1. Building reference index... [21.7843s] Building query index... [8.16991s] Building seed filter... [1.13102s] Searching alignments... [249.307s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.6401s] Building query index... [8.439s] Building seed filter... [1.0954s] Searching alignments... [266.843s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.4077s] Building query index... [7.37464s] Building seed filter... [1.08872s] Searching alignments... [240.588s] Deallocating buffers... [0.117559s] Opening temporary output file... [0.000601s] Computing alignments... [1547.82s] Deallocating reference... [0.0751s] Loading reference sequences... [539.243s] Masking reference... [61.6448s] Building reference histograms... [11.4864s] Allocating buffers... [0.000122s] Initializing temporary storage... [0.004698s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.6028s] Building query index... [8.10047s] Building seed filter... [1.10618s] Searching alignments... [489.224s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.1633s] Building query index... [9.11733s] Building seed filter... [1.13969s] Searching alignments... [427.738s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 2. Building reference index... [22.7588s] Building query index... [9.37944s] Building seed filter... [1.13873s] Searching alignments... [359.225s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.6509s] Building query index... [8.24328s] Building seed filter... [1.18133s] Searching alignments... [377.524s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.2301s] Building query index... [7.37449s] Building seed filter... [1.10837s] Searching alignments... [271.135s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 1. Building reference index... [21.9921s] Building query index... [8.13003s] Building seed filter... [1.08178s] Searching alignments... [263.075s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.7198s] Building query index... [8.32927s] Building seed filter... [1.11238s] Searching alignments... [284.021s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.8587s] Building query index... [7.47199s] Building seed filter... [1.09329s] Searching alignments... [249.793s] Deallocating buffers... [0.125585s] Opening temporary output file... [0.001636s] Computing alignments... [1660.28s] Deallocating reference... [0.066838s] Loading reference sequences... [567.185s] Masking reference... [61.5287s] Building reference histograms... [11.0483s] Allocating buffers... [0.000136s] Initializing temporary storage... [0.004688s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.8474s] Building query index... [8.21525s] Building seed filter... [1.11458s] Searching alignments... [423.127s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.1529s] Building query index... [9.05983s] Building seed filter... [1.13305s] Searching alignments... [381.238s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.8048s] Building query index... [9.29168s] Building seed filter... [1.17277s] Searching alignments... [345.5s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.5606s] Building query index... [8.20354s] Building seed filter... [1.16984s] Searching alignments... [333.376s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.2446s] Building query index... [7.29488s] Building seed filter... [1.14239s] Searching alignments... [254.584s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 1. Building reference index... [22.0425s] Building query index... [8.15251s] Building seed filter... [1.11595s] Searching alignments... [244.082s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.638s] Building query index... [8.42977s] Building seed filter... [1.10013s] Searching alignments... [249.12s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.5628s] Building query index... [7.37596s] Building seed filter... [1.08176s] Searching alignments... [235.381s] Deallocating buffers... [0.127556s] Opening temporary output file... [0.000613s] Computing alignments... [1488.27s] Deallocating reference... [0.064427s] Loading reference sequences... [246.449s] Masking reference... [22.7361s] Building reference histograms... [4.24771s] Allocating buffers... [0.000154s] Initializing temporary storage... [0.004771s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.02637s] Building query index... [8.216s] Building seed filter... [0.686814s] Searching alignments... [209.524s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.06257s] Building query index... [9.0048s] Building seed filter... [0.671991s] Searching alignments... [182.998s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.37432s] Building query index... [9.27146s] Building seed filter... [0.677732s] Searching alignments... [159.971s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.23342s] Building query index... [8.16781s] Building seed filter... [0.663413s] Searching alignments... [160.514s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 0. Building reference index... [7.12717s] Building query index... [7.32533s] Building seed filter... [0.632038s] Searching alignments... [119.022s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 1. Building reference index... [8.04728s] Building query index... [8.13403s] Building seed filter... [0.621962s] Searching alignments... [113.877s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.2443s] Building query index... [8.36235s] Building seed filter... [0.648354s] Searching alignments... [117.545s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.09795s] Building query index... [7.38794s] Building seed filter... [0.653746s] Searching alignments... [109.954s] Deallocating buffers... [0.053001s] Opening temporary output file... [0.002402s] Computing alignments... [680.688s] Deallocating reference... [0.029878s] Loading reference sequences... [4.1e-05s] Deallocating buffers... [0.032164s] Joining output blocks... [448.128s] Deallocating queries... [0.097308s] Loading query sequences... [9.10649s] Masking queries... [5.52187s] Building query seed set... [7e-06s] Building query histograms... [0.389798s] Allocating buffers... [0.000986s] Loading reference sequences... [683.377s] Masking reference... [63.0961s] Building reference histograms... [11.6422s] Allocating buffers... [0.000182s] Initializing temporary storage... [0.005054s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.8693s] Building query index... [0.46829s] Building seed filter... [0.839666s] Searching alignments... [23.8446s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.2423s] Building query index... [0.466022s] Building seed filter... [0.845034s] Searching alignments... [22.5432s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.8385s] Building query index... [0.480765s] Building seed filter... [0.845586s] Searching alignments... [18.2193s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.5529s] Building query index... [0.417501s] Building seed filter... [0.879742s] Searching alignments... [18.7332s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.1549s] Building query index... [0.470899s] Building seed filter... [0.862158s] Searching alignments... [14.9192s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 1. Building reference index... [22.0468s] Building query index... [0.43412s] Building seed filter... [0.807289s] Searching alignments... [13.737s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.5345s] Building query index... [0.435912s] Building seed filter... [0.825476s] Searching alignments... [14.8293s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.5435s] Building query index... [0.390196s] Building seed filter... [0.816172s] Searching alignments... [13.6149s] Deallocating buffers... [0.12386s] Opening temporary output file... [0.00127s] Computing alignments... [84.6648s] Deallocating reference... [0.076917s] Loading reference sequences... [609.307s] Masking reference... [62.255s] Building reference histograms... [11.5445s] Allocating buffers... [0.000174s] Initializing temporary storage... [0.005136s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.5779s] Building query index... [0.414739s] Building seed filter... [0.819253s] Searching alignments... [19.7997s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.1391s] Building query index... [0.463477s] Building seed filter... [0.831085s] Searching alignments... [17.7293s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.6381s] Building query index... [0.476087s] Building seed filter... [0.820534s] Searching alignments... [16.7828s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.5409s] Building query index... [0.486115s] Building seed filter... [0.841543s] Searching alignments... [15.7748s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.2476s] Building query index... [0.479597s] Building seed filter... [0.875188s] Searching alignments... [12.6721s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 1. Building reference index... [21.9774s] Building query index... [0.429971s] Building seed filter... [0.807622s] Searching alignments... [12.3594s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.4634s] Building query index... [0.43523s] Building seed filter... [0.843083s] Searching alignments... [12.9812s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.5304s] Building query index... [0.441377s] Building seed filter... [0.851133s] Searching alignments... [12.6441s] Deallocating buffers... [0.115074s] Opening temporary output file... [0.001712s] Computing alignments... [75.441s] Deallocating reference... [0.094986s] Loading reference sequences... [79.1508s] Masking reference... [61.4927s] Building reference histograms... [11.5332s] Allocating buffers... [0.000185s] Initializing temporary storage... [0.005166s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.5776s] Building query index... [0.470645s] Building seed filter... [0.823523s] Searching alignments... [22.1012s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 1. Building reference index... [21.9335s] Building query index... [0.467833s] Building seed filter... [0.806327s] Searching alignments... [19.3641s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.686s] Building query index... [0.475968s] Building seed filter... [0.831335s] Searching alignments... [17.2841s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.5721s] Building query index... [0.431481s] Building seed filter... [0.835763s] Searching alignments... [17.3598s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.1763s] Building query index... [0.373858s] Building seed filter... [0.857822s] Searching alignments... [13.5086s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 1. Building reference index... [21.8584s] Building query index... [0.443062s] Building seed filter... [0.823282s] Searching alignments... [13.0665s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.4334s] Building query index... [0.433461s] Building seed filter... [0.839067s] Searching alignments... [14.119s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.3206s] Building query index... [0.390354s] Building seed filter... [0.807075s] Searching alignments... [12.5198s] Deallocating buffers... [0.113353s] Opening temporary output file... [0.001188s] Computing alignments... [80.8671s] Deallocating reference... [0.069979s] Loading reference sequences... [64.5772s] Masking reference... [63.6135s] Building reference histograms... [12.1311s] Allocating buffers... [0.000206s] Initializing temporary storage... [0.005277s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.8089s] Building query index... [0.426014s] Building seed filter... [0.825062s] Searching alignments... [23.3358s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.3299s] Building query index... [0.468349s] Building seed filter... [0.842871s] Searching alignments... [20.4549s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 2. Building reference index... [22.8604s] Building query index... [0.480559s] Building seed filter... [0.839514s] Searching alignments... [17.8585s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.7556s] Building query index... [0.508006s] Building seed filter... [0.87649s] Searching alignments... [18.6035s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.4731s] Building query index... [0.383806s] Building seed filter... [0.848832s] Searching alignments... [13.8968s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 1. Building reference index... [21.9321s] Building query index... [0.426859s] Building seed filter... [0.828016s] Searching alignments... [13.722s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.5127s] Building query index... [0.43211s] Building seed filter... [0.853874s] Searching alignments... [14.9815s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.6821s] Building query index... [0.390953s] Building seed filter... [0.805534s] Searching alignments... [12.7745s] Deallocating buffers... [0.112571s] Opening temporary output file... [0.001664s] Computing alignments... [81.485s] Deallocating reference... [0.066154s] Loading reference sequences... [43.5814s] Masking reference... [63.0267s] Building reference histograms... [11.6865s] Allocating buffers... [0.000181s] Initializing temporary storage... [0.005166s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.5943s] Building query index... [0.421099s] Building seed filter... [0.818045s] Searching alignments... [20.1046s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.0633s] Building query index... [0.468638s] Building seed filter... [0.831982s] Searching alignments... [18.5719s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.5906s] Building query index... [0.477781s] Building seed filter... [0.824937s] Searching alignments... [17.2339s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.7929s] Building query index... [0.431952s] Building seed filter... [0.837913s] Searching alignments... [16.2592s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.6207s] Building query index... [0.436978s] Building seed filter... [0.850849s] Searching alignments... [13.2698s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 1. Building reference index... [22.14s] Building query index... [0.423001s] Building seed filter... [0.845361s] Searching alignments... [12.9997s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.7145s] Building query index... [0.485575s] Building seed filter... [0.842082s] Searching alignments... [14.5391s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.446s] Building query index... [0.381058s] Building seed filter... [0.813439s] Searching alignments... [12.6406s] Deallocating buffers... [0.121581s] Opening temporary output file... [0.001072s] Computing alignments... [73.1287s] Deallocating reference... [0.065548s] Loading reference sequences... [19.8041s] Masking reference... [23.1534s] Building reference histograms... [4.24527s] Allocating buffers... [0.000176s] Initializing temporary storage... [0.00315s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.1087s] Building query index... [0.416511s] Building seed filter... [0.353387s] Searching alignments... [9.83739s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.08147s] Building query index... [0.467996s] Building seed filter... [0.349508s] Searching alignments... [9.08438s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.36081s] Building query index... [0.487149s] Building seed filter... [0.355773s] Searching alignments... [7.8263s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.1794s] Building query index... [0.415635s] Building seed filter... [0.346079s] Searching alignments... [8.237s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 0. Building reference index... [7.00739s] Building query index... [0.374768s] Building seed filter... [0.336497s] Searching alignments... [6.52487s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 1. Building reference index... [8.0216s] Building query index... [0.461311s] Building seed filter... [0.356674s] Searching alignments... [6.75168s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.25387s] Building query index... [0.435233s] Building seed filter... [0.335709s] Searching alignments... [7.35245s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.1807s] Building query index... [0.381801s] Building seed filter... [0.33986s] Searching alignments... [5.72868s] Deallocating buffers... [0.051642s] Opening temporary output file... [0.000658s] Computing alignments... [37.7823s] Deallocating reference... [0.02964s] Loading reference sequences... [3.8e-05s] Deallocating buffers... [0.00175s] Joining output blocks... [19.9906s] Deallocating queries... [0.005201s] Loading query sequences... [1.7e-05s] Closing the input file... [5e-05s] Closing the output file... [3.7103s] Closing the database file... [0.00038s] Deallocating taxonomy... [1.4e-05s] Total time = 31959s Reported 830487376 pairwise alignments, 830488334 HSPs. 39179929 queries aligned. diamond v0.9.26.127 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.150297s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.086138s] Opening the output file... [0.000429s] Loading query sequences... [200.168s] Masking queries... [188.846s] Building query seed set... [0.691658s] Algorithm: Double-indexed Building query histograms... [7.32701s] Allocating buffers... [0.002313s] Loading reference sequences... [53.1893s] Masking reference... [61.4332s] Building reference histograms... [11.8939s] Allocating buffers... [0.000126s] Initializing temporary storage... [0.005224s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.7329s] Building query index... [8.48432s] Building seed filter... [1.14985s] Searching alignments... [610.661s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.1207s] Building query index... [9.29686s] Building seed filter... [1.13301s] Searching alignments... [533.398s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.8672s] Building query index... [9.51517s] Building seed filter... [1.14563s] Searching alignments... [467.673s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.6395s] Building query index... [8.40761s] Building seed filter... [1.14417s] Searching alignments... [469.091s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.1671s] Building query index... [7.5397s] Building seed filter... [1.11727s] Searching alignments... [349.645s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 1. Building reference index... [22.0128s] Building query index... [8.35485s] Building seed filter... [1.10512s] Searching alignments... [337.714s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.5627s] Building query index... [8.60627s] Building seed filter... [1.1181s] Searching alignments... [357.284s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.4289s] Building query index... [7.58932s] Building seed filter... [1.11335s] Searching alignments... [325.97s] Deallocating buffers... [0.124755s] Opening temporary output file... [0.001318s] Computing alignments... [2685.47s] Deallocating reference... [0.078456s] Loading reference sequences... [612.518s] Masking reference... [61.63s] Building reference histograms... [11.8584s] Allocating buffers... [0.00012s] Initializing temporary storage... [0.004831s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.7032s] Building query index... [8.30257s] Building seed filter... [1.11521s] Searching alignments... [514.623s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.2363s] Building query index... [9.22114s] Building seed filter... [1.14433s] Searching alignments... [456.228s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.6747s] Building query index... [9.47143s] Building seed filter... [1.1425s] Searching alignments... [420.613s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.612s] Building query index... [8.3363s] Building seed filter... [1.15838s] Searching alignments... [399.916s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.123s] Building query index... [7.49728s] Building seed filter... [1.09455s] Searching alignments... [304.877s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 1. Building reference index... [22.0248s] Building query index... [8.40792s] Building seed filter... [1.14013s] Searching alignments... [294.708s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.5612s] Building query index... [8.61406s] Building seed filter... [1.12681s] Searching alignments... [300.584s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.6013s] Building query index... [7.59631s] Building seed filter... [1.15778s] Searching alignments... [290.945s] Deallocating buffers... [0.121308s] Opening temporary output file... [0.000839s] Computing alignments... [2415.44s] Deallocating reference... [0.075076s] Loading reference sequences... [618.165s] Masking reference... [61.5527s] Building reference histograms... [11.3281s] Allocating buffers... [0.000135s] Initializing temporary storage... [0.004868s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.7599s] Building query index... [8.30499s] Building seed filter... [1.13482s] Searching alignments... [565.13s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 1. Building reference index... [22.0336s] Building query index... [9.28386s] Building seed filter... [1.13524s] Searching alignments... [495.727s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.7566s] Building query index... [9.4634s] Building seed filter... [1.12801s] Searching alignments... [427.884s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.7334s] Building query index... [8.35744s] Building seed filter... [1.16578s] Searching alignments... [436.37s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.133s] Building query index... [7.54208s] Building seed filter... [1.12006s] Searching alignments... [324.55s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 1. Building reference index... [22.0184s] Building query index... [8.41945s] Building seed filter... [1.14398s] Searching alignments... [312.011s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.6155s] Building query index... [9.33313s] Building seed filter... [1.10437s] Searching alignments... [334.248s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.6086s] Building query index... [7.6034s] Building seed filter... [1.11433s] Searching alignments... [301.281s] Deallocating buffers... [0.127226s] Opening temporary output file... [0.002501s] Computing alignments... [2525.83s] Deallocating reference... [0.074009s] Loading reference sequences... [560.396s] Masking reference... [61.5501s] Building reference histograms... [12.1353s] Allocating buffers... [0.000126s] Initializing temporary storage... [0.005741s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.6991s] Building query index... [8.25236s] Building seed filter... [1.12599s] Searching alignments... [598.532s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.1264s] Building query index... [9.25163s] Building seed filter... [1.1687s] Searching alignments... [529.288s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 2. Building reference index... [22.776s] Building query index... [9.53847s] Building seed filter... [1.1512s] Searching alignments... [440.854s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.6277s] Building query index... [8.40086s] Building seed filter... [1.15204s] Searching alignments... [457.602s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.3541s] Building query index... [7.6155s] Building seed filter... [1.11882s] Searching alignments... [339.887s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 1. Building reference index... [21.904s] Building query index... [8.45039s] Building seed filter... [1.15111s] Searching alignments... [326.645s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.6316s] Building query index... [8.65695s] Building seed filter... [1.14551s] Searching alignments... [352.639s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.5911s] Building query index... [7.68034s] Building seed filter... [1.11906s] Searching alignments... [311.385s] Deallocating buffers... [0.129966s] Opening temporary output file... [0.001228s] Computing alignments... [2664.86s] Deallocating reference... [0.067807s] Loading reference sequences... [577.222s] Masking reference... [61.5864s] Building reference histograms... [11.3201s] Allocating buffers... [0.00013s] Initializing temporary storage... [0.004739s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.64s] Building query index... [8.25166s] Building seed filter... [1.09792s] Searching alignments... [526.959s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.0901s] Building query index... [9.20108s] Building seed filter... [1.17856s] Searching alignments... [477.875s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.919s] Building query index... [9.58054s] Building seed filter... [1.15105s] Searching alignments... [428.609s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.5626s] Building query index... [8.35599s] Building seed filter... [1.18414s] Searching alignments... [413.584s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.1461s] Building query index... [7.43691s] Building seed filter... [1.09115s] Searching alignments... [313.583s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 1. Building reference index... [21.8228s] Building query index... [8.31705s] Building seed filter... [1.11465s] Searching alignments... [303.311s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.4423s] Building query index... [8.61763s] Building seed filter... [1.13465s] Searching alignments... [310.21s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.5664s] Building query index... [7.81012s] Building seed filter... [1.13246s] Searching alignments... [295.878s] Deallocating buffers... [0.119519s] Opening temporary output file... [0.001406s] Computing alignments... [2432.17s] Deallocating reference... [0.06831s] Loading reference sequences... [231.251s] Masking reference... [22.611s] Building reference histograms... [4.39978s] Allocating buffers... [0.000154s] Initializing temporary storage... [0.004607s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.12344s] Building query index... [8.21496s] Building seed filter... [0.678918s] Searching alignments... [256.965s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.09419s] Building query index... [9.20058s] Building seed filter... [0.66156s] Searching alignments... [224.58s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.30492s] Building query index... [9.46617s] Building seed filter... [0.683178s] Searching alignments... [198.913s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.14725s] Building query index... [8.43089s] Building seed filter... [0.673052s] Searching alignments... [196.593s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 0. Building reference index... [6.99211s] Building query index... [7.4642s] Building seed filter... [0.637418s] Searching alignments... [148.405s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 1. Building reference index... [7.99377s] Building query index... [8.35884s] Building seed filter... [0.654745s] Searching alignments... [139.647s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.2638s] Building query index... [8.54496s] Building seed filter... [0.62523s] Searching alignments... [148.728s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.07622s] Building query index... [7.52711s] Building seed filter... [0.646107s] Searching alignments... [135.951s] Deallocating buffers... [0.053022s] Opening temporary output file... [0.002392s] Computing alignments... [1076.71s] Deallocating reference... [0.029964s] Loading reference sequences... [4e-05s] Deallocating buffers... [0.033311s] Joining output blocks... [542.9s] Deallocating queries... [0.095264s] Loading query sequences... [16.9769s] Masking queries... [16.0608s] Building query seed set... [7e-06s] Building query histograms... [0.735981s] Allocating buffers... [0.002131s] Loading reference sequences... [632.978s] Masking reference... [63.4051s] Building reference histograms... [10.9966s] Allocating buffers... [0.000214s] Initializing temporary storage... [0.004695s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.5856s] Building query index... [0.792167s] Building seed filter... [0.838198s] Searching alignments... [54.3289s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.2233s] Building query index... [0.859155s] Building seed filter... [0.868466s] Searching alignments... [47.3552s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.7101s] Building query index... [0.894327s] Building seed filter... [0.847144s] Searching alignments... [41.0718s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.6811s] Building query index... [0.788354s] Building seed filter... [0.87701s] Searching alignments... [41.6568s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.3096s] Building query index... [0.721528s] Building seed filter... [0.843098s] Searching alignments... [31.8804s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 1. Building reference index... [22s] Building query index... [0.802023s] Building seed filter... [0.847448s] Searching alignments... [30.8589s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.5356s] Building query index... [0.816269s] Building seed filter... [0.831159s] Searching alignments... [32.141s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.3872s] Building query index... [0.72666s] Building seed filter... [0.853684s] Searching alignments... [29.6044s] Deallocating buffers... [0.121384s] Opening temporary output file... [0.001338s] Computing alignments... [229.429s] Deallocating reference... [0.0808s] Loading reference sequences... [555.408s] Masking reference... [61.7271s] Building reference histograms... [10.9955s] Allocating buffers... [0.000177s] Initializing temporary storage... [0.00494s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.6902s] Building query index... [0.810188s] Building seed filter... [0.829863s] Searching alignments... [46.0342s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.2289s] Building query index... [0.898239s] Building seed filter... [0.893163s] Searching alignments... [40.8989s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.7291s] Building query index... [0.896818s] Building seed filter... [0.84754s] Searching alignments... [37.0991s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.669s] Building query index... [0.824124s] Building seed filter... [0.86839s] Searching alignments... [35.2416s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.235s] Building query index... [0.724946s] Building seed filter... [0.826943s] Searching alignments... [27.6181s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 1. Building reference index... [22.0722s] Building query index... [0.808505s] Building seed filter... [0.848748s] Searching alignments... [27.3448s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.4524s] Building query index... [0.816745s] Building seed filter... [0.854745s] Searching alignments... [27.9151s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.3863s] Building query index... [0.733441s] Building seed filter... [0.864547s] Searching alignments... [26.2094s] Deallocating buffers... [0.122843s] Opening temporary output file... [0.000668s] Computing alignments... [202.688s] Deallocating reference... [0.075453s] Loading reference sequences... [589.422s] Masking reference... [61.5441s] Building reference histograms... [11.8062s] Allocating buffers... [0.000182s] Initializing temporary storage... [0.004612s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.5349s] Building query index... [0.789842s] Building seed filter... [0.81597s] Searching alignments... [50.4574s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 1. Building reference index... [22.0014s] Building query index... [0.860281s] Building seed filter... [0.855464s] Searching alignments... [44.4405s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.6675s] Building query index... [0.894452s] Building seed filter... [0.846309s] Searching alignments... [38.1671s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.6181s] Building query index... [0.968763s] Building seed filter... [0.879649s] Searching alignments... [38.6032s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.1363s] Building query index... [0.724825s] Building seed filter... [0.84866s] Searching alignments... [29.2284s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 1. Building reference index... [21.9434s] Building query index... [0.798333s] Building seed filter... [0.845966s] Searching alignments... [28.3115s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.5362s] Building query index... [0.808625s] Building seed filter... [0.878778s] Searching alignments... [30.377s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.3283s] Building query index... [0.723108s] Building seed filter... [0.878167s] Searching alignments... [27.5921s] Deallocating buffers... [0.143138s] Opening temporary output file... [0.001371s] Computing alignments... [216.076s] Deallocating reference... [0.074214s] Loading reference sequences... [529.784s] Masking reference... [61.5235s] Building reference histograms... [10.9524s] Allocating buffers... [0.000173s] Initializing temporary storage... [0.004702s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.7368s] Building query index... [0.789153s] Building seed filter... [0.811863s] Searching alignments... [54.0659s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.0783s] Building query index... [0.872456s] Building seed filter... [0.851215s] Searching alignments... [46.8858s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 2. Building reference index... [22.7307s] Building query index... [0.980074s] Building seed filter... [0.866202s] Searching alignments... [39.4549s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 3. Building reference index... [20.0306s] Building query index... [0.794378s] Building seed filter... [0.867323s] Searching alignments... [41.4845s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.2603s] Building query index... [0.733135s] Building seed filter... [0.865554s] Searching alignments... [30.7709s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 1. Building reference index... [22.0095s] Building query index... [0.793432s] Building seed filter... [0.811885s] Searching alignments... [29.7304s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.7764s] Building query index... [0.901028s] Building seed filter... [0.890309s] Searching alignments... [32.2208s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.4209s] Building query index... [0.729382s] Building seed filter... [0.905112s] Searching alignments... [28.0992s] Deallocating buffers... [0.121467s] Opening temporary output file... [0.001162s] Computing alignments... [224.34s] Deallocating reference... [0.066565s] Loading reference sequences... [503.64s] Masking reference... [61.4838s] Building reference histograms... [12.1321s] Allocating buffers... [0.000185s] Initializing temporary storage... [0.004997s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.7431s] Building query index... [0.783169s] Building seed filter... [0.844029s] Searching alignments... [45.8139s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.2714s] Building query index... [0.865848s] Building seed filter... [0.861363s] Searching alignments... [42.3967s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.7173s] Building query index... [0.893262s] Building seed filter... [0.856618s] Searching alignments... [38.1953s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.5614s] Building query index... [0.795877s] Building seed filter... [0.865458s] Searching alignments... [36.669s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.2996s] Building query index... [0.723125s] Building seed filter... [0.837226s] Searching alignments... [28.3875s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 1. Building reference index... [21.8592s] Building query index... [0.793225s] Building seed filter... [0.841885s] Searching alignments... [27.7617s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.4668s] Building query index... [0.816621s] Building seed filter... [0.851773s] Searching alignments... [28.0077s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.4228s] Building query index... [0.729314s] Building seed filter... [0.845944s] Searching alignments... [26.6875s] Deallocating buffers... [0.118109s] Opening temporary output file... [0.001302s] Computing alignments... [206.164s] Deallocating reference... [0.063858s] Loading reference sequences... [223.934s] Masking reference... [22.8677s] Building reference histograms... [4.07682s] Allocating buffers... [0.000192s] Initializing temporary storage... [0.003304s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.03023s] Building query index... [0.779914s] Building seed filter... [0.371149s] Searching alignments... [22.8137s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.08368s] Building query index... [0.878705s] Building seed filter... [0.397928s] Searching alignments... [20.319s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.34944s] Building query index... [0.899396s] Building seed filter... [0.36422s] Searching alignments... [17.7581s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.19108s] Building query index... [0.792205s] Building seed filter... [0.386378s] Searching alignments... [17.7034s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 0. Building reference index... [7.02329s] Building query index... [0.710329s] Building seed filter... [0.373841s] Searching alignments... [13.5751s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 1. Building reference index... [7.98477s] Building query index... [0.798793s] Building seed filter... [0.36148s] Searching alignments... [13.1872s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.2264s] Building query index... [0.832563s] Building seed filter... [0.364647s] Searching alignments... [13.7704s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.15277s] Building query index... [0.725891s] Building seed filter... [0.356284s] Searching alignments... [12.3809s] Deallocating buffers... [0.046611s] Opening temporary output file... [0.001711s] Computing alignments... [95.148s] Deallocating reference... [0.028692s] Loading reference sequences... [0.113437s] Deallocating buffers... [0.003723s] Joining output blocks... [45.6899s] Deallocating queries... [0.008504s] Loading query sequences... [1.9e-05s] Closing the input file... [3.8e-05s] Closing the output file... [3.44703s] Closing the database file... [6.4e-05s] Deallocating taxonomy... [1.7e-05s] Total time = 43884.5s Reported 1207194057 pairwise alignments, 1207195592 HSPs. 42852799 queries aligned. diamond v0.9.26.127 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.114422s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.287328s] Opening the output file... [0.000443s] Loading query sequences... [211.054s] Masking queries... [197.076s] Building query seed set... [0.609406s] Algorithm: Double-indexed Building query histograms... [7.32534s] Allocating buffers... [0.00483s] Loading reference sequences... [48.4629s] Masking reference... [63.0498s] Building reference histograms... [11.3872s] Allocating buffers... [0.000132s] Initializing temporary storage... [0.005095s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.7329s] Building query index... [8.40152s] Building seed filter... [1.10325s] Searching alignments... [571.992s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.1209s] Building query index... [9.17856s] Building seed filter... [1.15815s] Searching alignments... [500.923s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.8323s] Building query index... [9.54812s] Building seed filter... [1.17727s] Searching alignments... [435.332s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.7062s] Building query index... [8.27965s] Building seed filter... [1.16273s] Searching alignments... [438.554s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.1114s] Building query index... [7.42629s] Building seed filter... [1.12497s] Searching alignments... [327.824s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 1. Building reference index... [22.1973s] Building query index... [8.24571s] Building seed filter... [1.11603s] Searching alignments... [314.598s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.4785s] Building query index... [8.48685s] Building seed filter... [1.16225s] Searching alignments... [329.674s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.3772s] Building query index... [7.57894s] Building seed filter... [1.14812s] Searching alignments... [303.901s] Deallocating buffers... [0.127465s] Opening temporary output file... [0.001263s] Computing alignments... [1992.68s] Deallocating reference... [0.08199s] Loading reference sequences... [534.402s] Masking reference... [61.8471s] Building reference histograms... [11.5207s] Allocating buffers... [0.000132s] Initializing temporary storage... [0.006505s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.5953s] Building query index... [8.24081s] Building seed filter... [1.13392s] Searching alignments... [485.36s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.1829s] Building query index... [9.28532s] Building seed filter... [1.15589s] Searching alignments... [429.456s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.61s] Building query index... [9.45916s] Building seed filter... [1.17997s] Searching alignments... [393.904s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.6181s] Building query index... [8.36722s] Building seed filter... [1.16417s] Searching alignments... [376.99s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.1361s] Building query index... [7.39813s] Building seed filter... [1.09046s] Searching alignments... [288.975s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 1. Building reference index... [21.9799s] Building query index... [8.22841s] Building seed filter... [1.12359s] Searching alignments... [275.874s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.4704s] Building query index... [8.51286s] Building seed filter... [1.13188s] Searching alignments... [281.384s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.5333s] Building query index... [7.53242s] Building seed filter... [1.1288s] Searching alignments... [272.016s] Deallocating buffers... [0.127163s] Opening temporary output file... [0.001198s] Computing alignments... [1787.13s] Deallocating reference... [0.073126s] Loading reference sequences... [559.914s] Masking reference... [61.4969s] Building reference histograms... [11.5712s] Allocating buffers... [0.000132s] Initializing temporary storage... [0.004919s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.6274s] Building query index... [8.21468s] Building seed filter... [1.0939s] Searching alignments... [529.631s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 1. Building reference index... [22.0455s] Building query index... [9.17838s] Building seed filter... [1.17782s] Searching alignments... [468.757s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.5591s] Building query index... [9.42554s] Building seed filter... [1.18812s] Searching alignments... [403.518s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.6186s] Building query index... [8.33384s] Building seed filter... [1.1585s] Searching alignments... [406.939s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.2665s] Building query index... [7.55306s] Building seed filter... [1.1102s] Searching alignments... [303.561s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 1. Building reference index... [21.8737s] Building query index... [8.22838s] Building seed filter... [1.14503s] Searching alignments... [291.696s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.5729s] Building query index... [8.55485s] Building seed filter... [1.09906s] Searching alignments... [309.326s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.3734s] Building query index... [7.48807s] Building seed filter... [1.11625s] Searching alignments... [279.421s] Deallocating buffers... [0.126747s] Opening temporary output file... [0.002307s] Computing alignments... [1908.17s] Deallocating reference... [0.071826s] Loading reference sequences... [500.301s] Masking reference... [61.8913s] Building reference histograms... [11.7066s] Allocating buffers... [0.000135s] Initializing temporary storage... [0.004717s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.6311s] Building query index... [8.25061s] Building seed filter... [1.11517s] Searching alignments... [561.595s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.0855s] Building query index... [9.17063s] Building seed filter... [1.18462s] Searching alignments... [492.896s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 2. Building reference index... [23.0579s] Building query index... [9.45561s] Building seed filter... [1.18446s] Searching alignments... [415.289s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.6418s] Building query index... [8.30387s] Building seed filter... [1.17002s] Searching alignments... [429.751s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.1737s] Building query index... [7.42047s] Building seed filter... [1.13668s] Searching alignments... [317.942s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 1. Building reference index... [21.8984s] Building query index... [8.29375s] Building seed filter... [1.14394s] Searching alignments... [304.561s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.5787s] Building query index... [8.64547s] Building seed filter... [1.15686s] Searching alignments... [326.854s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.5504s] Building query index... [7.47594s] Building seed filter... [1.10688s] Searching alignments... [289.457s] Deallocating buffers... [0.125933s] Opening temporary output file... [0.002209s] Computing alignments... [2009.08s] Deallocating reference... [0.066447s] Loading reference sequences... [466.218s] Masking reference... [61.5379s] Building reference histograms... [11.8903s] Allocating buffers... [0.000134s] Initializing temporary storage... [0.005638s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.6447s] Building query index... [8.27592s] Building seed filter... [1.12732s] Searching alignments... [499.13s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.1406s] Building query index... [9.15345s] Building seed filter... [1.17641s] Searching alignments... [449.684s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.7495s] Building query index... [9.37441s] Building seed filter... [1.14792s] Searching alignments... [403.848s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.7554s] Building query index... [8.31708s] Building seed filter... [1.17608s] Searching alignments... [387.614s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.2002s] Building query index... [7.39364s] Building seed filter... [1.14131s] Searching alignments... [296.923s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 1. Building reference index... [22.0647s] Building query index... [8.30808s] Building seed filter... [1.12077s] Searching alignments... [284.572s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.6175s] Building query index... [8.67593s] Building seed filter... [1.16956s] Searching alignments... [290.146s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.3629s] Building query index... [7.4453s] Building seed filter... [1.14409s] Searching alignments... [277.615s] Deallocating buffers... [0.118725s] Opening temporary output file... [0.001241s] Computing alignments... [1819.62s] Deallocating reference... [0.065064s] Loading reference sequences... [205.023s] Masking reference... [22.8076s] Building reference histograms... [4.31474s] Allocating buffers... [0.000155s] Initializing temporary storage... [0.004901s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.22986s] Building query index... [8.24669s] Building seed filter... [0.684957s] Searching alignments... [241.478s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.0936s] Building query index... [9.1103s] Building seed filter... [0.667588s] Searching alignments... [211.222s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.32906s] Building query index... [9.43306s] Building seed filter... [0.689232s] Searching alignments... [184.975s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.15162s] Building query index... [8.28559s] Building seed filter... [0.675544s] Searching alignments... [183.378s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 0. Building reference index... [7.02448s] Building query index... [7.35861s] Building seed filter... [0.647208s] Searching alignments... [139.082s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 1. Building reference index... [7.99835s] Building query index... [8.23453s] Building seed filter... [0.642325s] Searching alignments... [130.142s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.2288s] Building query index... [8.49076s] Building seed filter... [0.627843s] Searching alignments... [135.948s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.14393s] Building query index... [7.46234s] Building seed filter... [0.641308s] Searching alignments... [126.819s] Deallocating buffers... [0.052912s] Opening temporary output file... [0.00273s] Computing alignments... [805.405s] Deallocating reference... [0.030073s] Loading reference sequences... [4.3e-05s] Deallocating buffers... [0.030862s] Joining output blocks... [524.625s] Deallocating queries... [0.086519s] Loading query sequences... [10.5569s] Masking queries... [10.1659s] Building query seed set... [7e-06s] Building query histograms... [0.46224s] Allocating buffers... [0.001014s] Loading reference sequences... [530.611s] Masking reference... [62.8609s] Building reference histograms... [10.6477s] Allocating buffers... [0.000176s] Initializing temporary storage... [0.004383s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.5896s] Building query index... [0.509375s] Building seed filter... [0.830899s] Searching alignments... [32.9241s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.0708s] Building query index... [0.573549s] Building seed filter... [0.871009s] Searching alignments... [29.4969s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.7491s] Building query index... [0.583625s] Building seed filter... [0.871711s] Searching alignments... [25.2641s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.8058s] Building query index... [0.520694s] Building seed filter... [0.858648s] Searching alignments... [25.6837s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.2828s] Building query index... [0.461847s] Building seed filter... [0.866346s] Searching alignments... [19.5168s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 1. Building reference index... [21.8869s] Building query index... [0.517394s] Building seed filter... [0.815015s] Searching alignments... [19.398s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.6104s] Building query index... [0.534871s] Building seed filter... [0.827588s] Searching alignments... [19.8767s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.3933s] Building query index... [0.456461s] Building seed filter... [0.845228s] Searching alignments... [18.3815s] Deallocating buffers... [0.124085s] Opening temporary output file... [0.000757s] Computing alignments... [117.242s] Deallocating reference... [0.078798s] Loading reference sequences... [500.179s] Masking reference... [62.5492s] Building reference histograms... [11.3081s] Allocating buffers... [0.000174s] Initializing temporary storage... [0.004808s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.9016s] Building query index... [0.50918s] Building seed filter... [0.831148s] Searching alignments... [27.685s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.3326s] Building query index... [0.667261s] Building seed filter... [0.868004s] Searching alignments... [24.7751s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.7217s] Building query index... [0.580495s] Building seed filter... [0.848316s] Searching alignments... [22.9208s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.5993s] Building query index... [0.521138s] Building seed filter... [0.848115s] Searching alignments... [21.7838s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.0929s] Building query index... [0.515996s] Building seed filter... [0.853012s] Searching alignments... [17.2359s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 1. Building reference index... [21.8827s] Building query index... [0.511888s] Building seed filter... [0.825399s] Searching alignments... [16.7714s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.439s] Building query index... [0.527117s] Building seed filter... [0.823786s] Searching alignments... [17.0674s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.4148s] Building query index... [0.528025s] Building seed filter... [0.827851s] Searching alignments... [16.5705s] Deallocating buffers... [0.122131s] Opening temporary output file... [0.0005s] Computing alignments... [103.596s] Deallocating reference... [0.072058s] Loading reference sequences... [510.773s] Masking reference... [61.6199s] Building reference histograms... [11.6854s] Allocating buffers... [0.000176s] Initializing temporary storage... [0.005587s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.7481s] Building query index... [0.548487s] Building seed filter... [0.833504s] Searching alignments... [30.5132s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 1. Building reference index... [22.0451s] Building query index... [0.567366s] Building seed filter... [0.837999s] Searching alignments... [27.1774s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.7187s] Building query index... [0.720584s] Building seed filter... [0.869798s] Searching alignments... [23.4193s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.53s] Building query index... [0.52639s] Building seed filter... [0.857629s] Searching alignments... [24.1789s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.1548s] Building query index... [0.475156s] Building seed filter... [0.828695s] Searching alignments... [18.9739s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 1. Building reference index... [21.8395s] Building query index... [0.573305s] Building seed filter... [0.843438s] Searching alignments... [17.8034s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.4319s] Building query index... [0.545124s] Building seed filter... [0.835634s] Searching alignments... [18.8258s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.3387s] Building query index... [0.464639s] Building seed filter... [0.823485s] Searching alignments... [16.9166s] Deallocating buffers... [0.115167s] Opening temporary output file... [0.001481s] Computing alignments... [110.078s] Deallocating reference... [0.073482s] Loading reference sequences... [471.312s] Masking reference... [62.9746s] Building reference histograms... [11.5174s] Allocating buffers... [0.00024s] Initializing temporary storage... [0.005516s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.4691s] Building query index... [0.519724s] Building seed filter... [0.865429s] Searching alignments... [32.5702s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.1824s] Building query index... [0.574165s] Building seed filter... [0.87114s] Searching alignments... [29.2722s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 2. Building reference index... [22.8598s] Building query index... [0.583494s] Building seed filter... [0.87856s] Searching alignments... [24.1205s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.7164s] Building query index... [0.514323s] Building seed filter... [0.841857s] Searching alignments... [25.3625s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.1836s] Building query index... [0.474003s] Building seed filter... [0.845167s] Searching alignments... [19.252s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 1. Building reference index... [21.9606s] Building query index... [0.567781s] Building seed filter... [0.851715s] Searching alignments... [18.4819s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.9492s] Building query index... [0.532656s] Building seed filter... [0.850208s] Searching alignments... [19.6867s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.4398s] Building query index... [0.450965s] Building seed filter... [0.850796s] Searching alignments... [17.855s] Deallocating buffers... [0.125908s] Opening temporary output file... [0.001616s] Computing alignments... [115.571s] Deallocating reference... [0.063605s] Loading reference sequences... [448.577s] Masking reference... [63.0102s] Building reference histograms... [11.7592s] Allocating buffers... [0.000176s] Initializing temporary storage... [0.00498s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.6732s] Building query index... [0.505396s] Building seed filter... [0.812796s] Searching alignments... [28.2145s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.1252s] Building query index... [0.573484s] Building seed filter... [0.827104s] Searching alignments... [25.5141s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.7618s] Building query index... [0.575742s] Building seed filter... [0.882401s] Searching alignments... [23.7014s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.7461s] Building query index... [0.522639s] Building seed filter... [0.873924s] Searching alignments... [22.4155s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.1482s] Building query index... [0.52088s] Building seed filter... [0.848261s] Searching alignments... [17.737s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 1. Building reference index... [21.925s] Building query index... [0.552164s] Building seed filter... [0.856446s] Searching alignments... [17.5917s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.468s] Building query index... [0.524405s] Building seed filter... [0.849486s] Searching alignments... [17.7151s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.4637s] Building query index... [0.53806s] Building seed filter... [0.859179s] Searching alignments... [16.8127s] Deallocating buffers... [0.115387s] Opening temporary output file... [0.001729s] Computing alignments... [104.161s] Deallocating reference... [0.064136s] Loading reference sequences... [18.2739s] Masking reference... [23.0744s] Building reference histograms... [4.20878s] Allocating buffers... [0.000252s] Initializing temporary storage... [0.004345s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.04644s] Building query index... [0.497085s] Building seed filter... [0.358823s] Searching alignments... [13.8454s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.07002s] Building query index... [0.56155s] Building seed filter... [0.379972s] Searching alignments... [12.4676s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.34624s] Building query index... [0.596369s] Building seed filter... [0.343448s] Searching alignments... [10.9206s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.18247s] Building query index... [0.504845s] Building seed filter... [0.342451s] Searching alignments... [10.7032s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 0. Building reference index... [7.01874s] Building query index... [0.443134s] Building seed filter... [0.358018s] Searching alignments... [8.39293s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 1. Building reference index... [8.02809s] Building query index... [0.511959s] Building seed filter... [0.34193s] Searching alignments... [8.078s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.25076s] Building query index... [0.521919s] Building seed filter... [0.344995s] Searching alignments... [8.27964s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.07941s] Building query index... [0.463508s] Building seed filter... [0.349315s] Searching alignments... [7.5774s] Deallocating buffers... [0.044125s] Opening temporary output file... [0.000652s] Computing alignments... [49.7125s] Deallocating reference... [0.028156s] Loading reference sequences... [4.1e-05s] Deallocating buffers... [0.002004s] Joining output blocks... [28.4151s] Deallocating queries... [0.006787s] Loading query sequences... [1.9e-05s] Closing the input file... [3.4e-05s] Closing the output file... [3.40962s] Closing the database file... [3.3e-05s] Deallocating taxonomy... [1.1e-05s] Total time = 37186.2s Reported 1154049532 pairwise alignments, 1154050533 HSPs. 40484427 queries aligned. diamond v0.9.26.127 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.059429s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.11233s] Opening the output file... [0.000401s] Loading query sequences... [198.711s] Masking queries... [145.471s] Building query seed set... [0.774367s] Algorithm: Double-indexed Building query histograms... [7.49313s] Allocating buffers... [0.003581s] Loading reference sequences... [44.4325s] Masking reference... [61.6424s] Building reference histograms... [11.1175s] Allocating buffers... [0.000127s] Initializing temporary storage... [0.005364s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.698s] Building query index... [8.29048s] Building seed filter... [1.12244s] Searching alignments... [585.06s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.0568s] Building query index... [9.24542s] Building seed filter... [1.13771s] Searching alignments... [512.936s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.8097s] Building query index... [9.526s] Building seed filter... [1.1942s] Searching alignments... [445.153s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.569s] Building query index... [8.44818s] Building seed filter... [1.18342s] Searching alignments... [449.47s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.1752s] Building query index... [7.50663s] Building seed filter... [1.13274s] Searching alignments... [330.757s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 1. Building reference index... [21.8956s] Building query index... [8.35526s] Building seed filter... [1.14076s] Searching alignments... [321.394s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.5242s] Building query index... [8.54568s] Building seed filter... [1.10837s] Searching alignments... [341.899s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.5503s] Building query index... [7.58587s] Building seed filter... [1.13262s] Searching alignments... [308.341s] Deallocating buffers... [0.124575s] Opening temporary output file... [0.001711s] Computing alignments... [2049.14s] Deallocating reference... [0.078622s] Loading reference sequences... [509.714s] Masking reference... [61.9337s] Building reference histograms... [11.8s] Allocating buffers... [0.000127s] Initializing temporary storage... [0.00483s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.5862s] Building query index... [8.18799s] Building seed filter... [1.10748s] Searching alignments... [489.769s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.0017s] Building query index... [9.24645s] Building seed filter... [1.14142s] Searching alignments... [435.055s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.6771s] Building query index... [9.51774s] Building seed filter... [1.14332s] Searching alignments... [397.988s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.6883s] Building query index... [8.38322s] Building seed filter... [1.14946s] Searching alignments... [380.945s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.2577s] Building query index... [7.47158s] Building seed filter... [1.13302s] Searching alignments... [291.077s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 1. Building reference index... [21.8138s] Building query index... [8.44471s] Building seed filter... [1.13168s] Searching alignments... [280.417s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.4816s] Building query index... [8.61134s] Building seed filter... [1.16264s] Searching alignments... [286.012s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.3355s] Building query index... [7.6178s] Building seed filter... [1.12154s] Searching alignments... [275.571s] Deallocating buffers... [0.123788s] Opening temporary output file... [0.001522s] Computing alignments... [1808.86s] Deallocating reference... [0.074687s] Loading reference sequences... [508.732s] Masking reference... [62.442s] Building reference histograms... [10.9857s] Allocating buffers... [0.000133s] Initializing temporary storage... [0.004308s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.4347s] Building query index... [8.2868s] Building seed filter... [1.1231s] Searching alignments... [541.969s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 1. Building reference index... [22.1683s] Building query index... [9.215s] Building seed filter... [1.13673s] Searching alignments... [472.773s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.5882s] Building query index... [9.44249s] Building seed filter... [1.14775s] Searching alignments... [410.336s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.6275s] Building query index... [8.35922s] Building seed filter... [1.15209s] Searching alignments... [416.249s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.2603s] Building query index... [7.47067s] Building seed filter... [1.0775s] Searching alignments... [305.11s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 1. Building reference index... [21.9361s] Building query index... [8.41015s] Building seed filter... [1.13006s] Searching alignments... [296.201s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.5376s] Building query index... [8.5874s] Building seed filter... [1.12447s] Searching alignments... [315.967s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.4035s] Building query index... [7.57208s] Building seed filter... [1.11803s] Searching alignments... [285.894s] Deallocating buffers... [0.126014s] Opening temporary output file... [0.001177s] Computing alignments... [1930.62s] Deallocating reference... [0.073081s] Loading reference sequences... [464.784s] Masking reference... [61.7089s] Building reference histograms... [11.0604s] Allocating buffers... [0.000129s] Initializing temporary storage... [0.004946s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.871s] Building query index... [8.20287s] Building seed filter... [1.1274s] Searching alignments... [572.47s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.3786s] Building query index... [9.21613s] Building seed filter... [1.16231s] Searching alignments... [500.911s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 2. Building reference index... [22.6884s] Building query index... [9.47273s] Building seed filter... [1.17022s] Searching alignments... [424.137s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.7887s] Building query index... [8.30716s] Building seed filter... [1.15808s] Searching alignments... [440.905s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.2943s] Building query index... [7.48758s] Building seed filter... [1.14396s] Searching alignments... [319.359s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 1. Building reference index... [22.0019s] Building query index... [8.2928s] Building seed filter... [1.12014s] Searching alignments... [309.282s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.7239s] Building query index... [8.52429s] Building seed filter... [1.11372s] Searching alignments... [337.473s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.5426s] Building query index... [7.53695s] Building seed filter... [1.12421s] Searching alignments... [295.474s] Deallocating buffers... [0.125873s] Opening temporary output file... [0.001387s] Computing alignments... [2030.13s] Deallocating reference... [0.076962s] Loading reference sequences... [437.983s] Masking reference... [61.7188s] Building reference histograms... [11.0364s] Allocating buffers... [0.000127s] Initializing temporary storage... [0.00479s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.6543s] Building query index... [8.25801s] Building seed filter... [1.12316s] Searching alignments... [500.605s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.2757s] Building query index... [9.21579s] Building seed filter... [1.15048s] Searching alignments... [449.481s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.7941s] Building query index... [9.42019s] Building seed filter... [1.16591s] Searching alignments... [410.949s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.816s] Building query index... [8.33285s] Building seed filter... [1.1655s] Searching alignments... [391.77s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.4349s] Building query index... [7.46103s] Building seed filter... [1.11691s] Searching alignments... [298.642s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 1. Building reference index... [22.0254s] Building query index... [8.38403s] Building seed filter... [1.12172s] Searching alignments... [287.489s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.6218s] Building query index... [8.62612s] Building seed filter... [1.13313s] Searching alignments... [294.369s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.6491s] Building query index... [7.62953s] Building seed filter... [1.1304s] Searching alignments... [280.636s] Deallocating buffers... [0.126021s] Opening temporary output file... [0.000751s] Computing alignments... [1826.43s] Deallocating reference... [0.063648s] Loading reference sequences... [206.411s] Masking reference... [23.0972s] Building reference histograms... [4.13134s] Allocating buffers... [0.000155s] Initializing temporary storage... [0.005219s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.22687s] Building query index... [8.24408s] Building seed filter... [0.683097s] Searching alignments... [246s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.09241s] Building query index... [9.12253s] Building seed filter... [0.687859s] Searching alignments... [212.858s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.2988s] Building query index... [9.44741s] Building seed filter... [0.66038s] Searching alignments... [186.846s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.16873s] Building query index... [8.32261s] Building seed filter... [0.685966s] Searching alignments... [185.264s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 0. Building reference index... [7.12327s] Building query index... [7.43206s] Building seed filter... [0.639891s] Searching alignments... [139.106s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 1. Building reference index... [8.03211s] Building query index... [8.32207s] Building seed filter... [0.637365s] Searching alignments... [133.15s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.2466s] Building query index... [8.53023s] Building seed filter... [0.629451s] Searching alignments... [140.242s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.11991s] Building query index... [7.51839s] Building seed filter... [0.630712s] Searching alignments... [127.902s] Deallocating buffers... [0.041334s] Opening temporary output file... [0.001511s] Computing alignments... [824.088s] Deallocating reference... [0.029857s] Loading reference sequences... [4.1e-05s] Deallocating buffers... [0.031222s] Joining output blocks... [525.635s] Deallocating queries... [0.084771s] Loading query sequences... [59.9745s] Masking queries... [40.3398s] Building query seed set... [7e-06s] Building query histograms... [2.4376s] Allocating buffers... [0.003019s] Loading reference sequences... [508.95s] Masking reference... [61.8294s] Building reference histograms... [11.8671s] Allocating buffers... [0.000222s] Initializing temporary storage... [0.004962s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.6573s] Building query index... [2.4562s] Building seed filter... [0.899183s] Searching alignments... [172.926s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.1213s] Building query index... [2.73169s] Building seed filter... [0.928652s] Searching alignments... [152.139s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.7574s] Building query index... [2.81191s] Building seed filter... [0.976311s] Searching alignments... [130.577s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.7119s] Building query index... [2.50765s] Building seed filter... [0.937445s] Searching alignments... [132.038s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.1477s] Building query index... [2.26333s] Building seed filter... [0.91974s] Searching alignments... [97.3864s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 1. Building reference index... [22.0918s] Building query index... [2.45578s] Building seed filter... [0.925352s] Searching alignments... [95.0315s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.5793s] Building query index... [2.52633s] Building seed filter... [0.919336s] Searching alignments... [101.362s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.5937s] Building query index... [2.23708s] Building seed filter... [0.918367s] Searching alignments... [92.6851s] Deallocating buffers... [0.127078s] Opening temporary output file... [0.001363s] Computing alignments... [601.717s] Deallocating reference... [0.079113s] Loading reference sequences... [517.302s] Masking reference... [61.9748s] Building reference histograms... [11.4472s] Allocating buffers... [0.000174s] Initializing temporary storage... [0.003549s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.5909s] Building query index... [2.45459s] Building seed filter... [0.91056s] Searching alignments... [146.091s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.0863s] Building query index... [2.74207s] Building seed filter... [0.925545s] Searching alignments... [127.009s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.7971s] Building query index... [2.77021s] Building seed filter... [0.949118s] Searching alignments... [116.753s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.6733s] Building query index... [2.44933s] Building seed filter... [0.951933s] Searching alignments... [112.206s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.261s] Building query index... [2.21557s] Building seed filter... [0.905151s] Searching alignments... [86.9914s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 1. Building reference index... [21.9692s] Building query index... [2.49608s] Building seed filter... [0.948085s] Searching alignments... [82.8015s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.466s] Building query index... [2.52196s] Building seed filter... [0.935722s] Searching alignments... [86.056s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.4488s] Building query index... [2.24912s] Building seed filter... [0.891968s] Searching alignments... [81.0369s] Deallocating buffers... [0.119932s] Opening temporary output file... [0.001185s] Computing alignments... [527.449s] Deallocating reference... [0.075865s] Loading reference sequences... [489.084s] Masking reference... [62.1816s] Building reference histograms... [11.7243s] Allocating buffers... [0.00018s] Initializing temporary storage... [0.004643s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.4455s] Building query index... [2.45277s] Building seed filter... [0.89064s] Searching alignments... [161.409s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 1. Building reference index... [22.0359s] Building query index... [2.7239s] Building seed filter... [0.929892s] Searching alignments... [140.682s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.6926s] Building query index... [2.82334s] Building seed filter... [0.939332s] Searching alignments... [119.665s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.661s] Building query index... [2.47985s] Building seed filter... [0.89946s] Searching alignments... [123.796s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.2229s] Building query index... [2.20669s] Building seed filter... [0.915755s] Searching alignments... [90.8654s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 1. Building reference index... [22.0555s] Building query index... [2.46528s] Building seed filter... [0.89249s] Searching alignments... [87.6487s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.5102s] Building query index... [2.55313s] Building seed filter... [0.920111s] Searching alignments... [94.7712s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.3663s] Building query index... [2.23433s] Building seed filter... [0.891112s] Searching alignments... [83.6666s] Deallocating buffers... [0.126521s] Opening temporary output file... [0.001519s] Computing alignments... [563.14s] Deallocating reference... [0.070682s] Loading reference sequences... [451.545s] Masking reference... [63.1888s] Building reference histograms... [11.7186s] Allocating buffers... [0.000178s] Initializing temporary storage... [0.004867s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.7613s] Building query index... [2.42617s] Building seed filter... [0.902552s] Searching alignments... [171.187s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.2577s] Building query index... [2.73626s] Building seed filter... [0.947372s] Searching alignments... [149.305s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 2. Building reference index... [22.7516s] Building query index... [2.79183s] Building seed filter... [0.940495s] Searching alignments... [123.04s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.7268s] Building query index... [2.50255s] Building seed filter... [0.946729s] Searching alignments... [129.148s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.3305s] Building query index... [2.24189s] Building seed filter... [0.99149s] Searching alignments... [95.4423s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 1. Building reference index... [21.9776s] Building query index... [2.45897s] Building seed filter... [0.958658s] Searching alignments... [92.5533s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.6558s] Building query index... [2.54238s] Building seed filter... [0.916003s] Searching alignments... [101.629s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.4322s] Building query index... [2.27763s] Building seed filter... [0.936541s] Searching alignments... [87.5063s] Deallocating buffers... [0.122539s] Opening temporary output file... [0.000667s] Computing alignments... [592.055s] Deallocating reference... [0.063782s] Loading reference sequences... [451.169s] Masking reference... [62.1453s] Building reference histograms... [10.6787s] Allocating buffers... [0.000178s] Initializing temporary storage... [0.005277s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.7215s] Building query index... [2.42807s] Building seed filter... [0.904841s] Searching alignments... [147.006s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.1574s] Building query index... [2.74425s] Building seed filter... [0.937043s] Searching alignments... [132.303s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.6237s] Building query index... [2.76987s] Building seed filter... [0.924413s] Searching alignments... [120.084s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.8068s] Building query index... [2.48646s] Building seed filter... [0.931155s] Searching alignments... [115.348s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.405s] Building query index... [2.24373s] Building seed filter... [0.920834s] Searching alignments... [89.3616s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 1. Building reference index... [21.8836s] Building query index... [2.4698s] Building seed filter... [0.909486s] Searching alignments... [85.3398s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.5458s] Building query index... [2.5395s] Building seed filter... [0.930772s] Searching alignments... [88.1178s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.6422s] Building query index... [2.23139s] Building seed filter... [0.900457s] Searching alignments... [83.1476s] Deallocating buffers... [0.122557s] Opening temporary output file... [0.001217s] Computing alignments... [535.902s] Deallocating reference... [0.064603s] Loading reference sequences... [197.683s] Masking reference... [23.0514s] Building reference histograms... [4.33438s] Allocating buffers... [0.000174s] Initializing temporary storage... [0.017736s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.14924s] Building query index... [2.43774s] Building seed filter... [0.44766s] Searching alignments... [73.388s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.05246s] Building query index... [2.72783s] Building seed filter... [0.457347s] Searching alignments... [63.396s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.32477s] Building query index... [2.79879s] Building seed filter... [0.44785s] Searching alignments... [55.3484s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.18305s] Building query index... [2.45203s] Building seed filter... [0.45584s] Searching alignments... [55.1546s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 0. Building reference index... [7.03247s] Building query index... [2.21985s] Building seed filter... [0.442488s] Searching alignments... [41.7846s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 1. Building reference index... [8.00081s] Building query index... [2.47584s] Building seed filter... [0.444032s] Searching alignments... [39.342s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.25381s] Building query index... [2.54003s] Building seed filter... [0.432503s] Searching alignments... [41.6721s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.06966s] Building query index... [2.22874s] Building seed filter... [0.442486s] Searching alignments... [39.0523s] Deallocating buffers... [0.052472s] Opening temporary output file... [0.001838s] Computing alignments... [247.758s] Deallocating reference... [0.029692s] Loading reference sequences... [0.090394s] Deallocating buffers... [0.012468s] Joining output blocks... [151.876s] Deallocating queries... [0.026481s] Loading query sequences... [2.1e-05s] Closing the input file... [3.7e-05s] Closing the output file... [3.6769s] Closing the database file... [3.2e-05s] Deallocating taxonomy... [1e-05s] Total time = 44262.1s Reported 1344809954 pairwise alignments, 1344811879 HSPs. 52327341 queries aligned. diamond v0.9.26.127 | by Benjamin Buchfink Licensed under the GNU GPL Check http://github.com/bbuchfink/diamond for updates. #CPU threads: 28 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Opening the database... [0.069518s] Percentage range of top alignment score to report hits: 5 Opening the input file... [0.084636s] Opening the output file... [0.000383s] Loading query sequences... [208.1s] Masking queries... [142.748s] Building query seed set... [0.607094s] Algorithm: Double-indexed Building query histograms... [7.11187s] Allocating buffers... [0.002649s] Loading reference sequences... [44.9466s] Masking reference... [63.2336s] Building reference histograms... [11.3864s] Allocating buffers... [0.00013s] Initializing temporary storage... [0.005193s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.6331s] Building query index... [8.32764s] Building seed filter... [1.14268s] Searching alignments... [542.247s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.3018s] Building query index... [9.19132s] Building seed filter... [1.17618s] Searching alignments... [479.504s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.7269s] Building query index... [9.48996s] Building seed filter... [1.14456s] Searching alignments... [420.102s] Processing query chunk 0, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.5751s] Building query index... [8.2979s] Building seed filter... [1.17291s] Searching alignments... [419.861s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.2204s] Building query index... [7.41504s] Building seed filter... [1.11235s] Searching alignments... [308.251s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 1. Building reference index... [21.927s] Building query index... [8.20657s] Building seed filter... [1.11578s] Searching alignments... [301.422s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.4781s] Building query index... [8.42418s] Building seed filter... [1.11033s] Searching alignments... [318.939s] Processing query chunk 0, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.463s] Building query index... [7.4831s] Building seed filter... [1.1192s] Searching alignments... [288.441s] Deallocating buffers... [0.119344s] Opening temporary output file... [0.003205s] Computing alignments... [1841.11s] Deallocating reference... [0.083868s] Loading reference sequences... [504.46s] Masking reference... [61.7442s] Building reference histograms... [10.9687s] Allocating buffers... [0.000129s] Initializing temporary storage... [0.004876s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.635s] Building query index... [8.22701s] Building seed filter... [1.11558s] Searching alignments... [459.62s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.2527s] Building query index... [9.07738s] Building seed filter... [1.14723s] Searching alignments... [410.301s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.9066s] Building query index... [9.45881s] Building seed filter... [1.16978s] Searching alignments... [375.377s] Processing query chunk 0, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.5919s] Building query index... [8.34659s] Building seed filter... [1.15337s] Searching alignments... [357.242s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.2733s] Building query index... [7.36355s] Building seed filter... [1.14934s] Searching alignments... [271.846s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 1. Building reference index... [21.8902s] Building query index... [8.29755s] Building seed filter... [1.12314s] Searching alignments... [262.309s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.5338s] Building query index... [8.51217s] Building seed filter... [1.15752s] Searching alignments... [265.767s] Processing query chunk 0, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.6197s] Building query index... [7.41369s] Building seed filter... [1.12918s] Searching alignments... [257.255s] Deallocating buffers... [0.123377s] Opening temporary output file... [0.001166s] Computing alignments... [1628.16s] Deallocating reference... [0.070104s] Loading reference sequences... [452.256s] Masking reference... [61.691s] Building reference histograms... [11.748s] Allocating buffers... [0.000132s] Initializing temporary storage... [0.004751s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.5574s] Building query index... [8.15896s] Building seed filter... [1.13849s] Searching alignments... [501.457s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 1. Building reference index... [21.9957s] Building query index... [9.21355s] Building seed filter... [1.1401s] Searching alignments... [441.633s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.575s] Building query index... [9.40051s] Building seed filter... [1.15978s] Searching alignments... [386.89s] Processing query chunk 0, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.5403s] Building query index... [8.27312s] Building seed filter... [1.13314s] Searching alignments... [390.828s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.104s] Building query index... [7.40772s] Building seed filter... [1.15724s] Searching alignments... [285.895s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 1. Building reference index... [21.8804s] Building query index... [8.23195s] Building seed filter... [1.14278s] Searching alignments... [274.942s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.4567s] Building query index... [8.46275s] Building seed filter... [1.12236s] Searching alignments... [294.692s] Processing query chunk 0, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.3256s] Building query index... [7.51457s] Building seed filter... [1.10983s] Searching alignments... [267.63s] Deallocating buffers... [0.126155s] Opening temporary output file... [0.001394s] Computing alignments... [1712.93s] Deallocating reference... [0.075163s] Loading reference sequences... [374.561s] Masking reference... [63.5249s] Building reference histograms... [11.6877s] Allocating buffers... [0.000136s] Initializing temporary storage... [0.0055s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.6517s] Building query index... [8.18771s] Building seed filter... [1.12677s] Searching alignments... [535.088s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.3525s] Building query index... [9.13739s] Building seed filter... [1.1688s] Searching alignments... [467.101s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 2. Building reference index... [23.0971s] Building query index... [9.40911s] Building seed filter... [1.19123s] Searching alignments... [395.76s] Processing query chunk 0, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.6152s] Building query index... [8.22455s] Building seed filter... [1.17751s] Searching alignments... [410.314s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.2713s] Building query index... [7.39371s] Building seed filter... [1.10503s] Searching alignments... [297.479s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 1. Building reference index... [22.2351s] Building query index... [8.22925s] Building seed filter... [1.15626s] Searching alignments... [288.815s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.6906s] Building query index... [8.44697s] Building seed filter... [1.11321s] Searching alignments... [311.744s] Processing query chunk 0, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.4315s] Building query index... [7.47609s] Building seed filter... [1.13579s] Searching alignments... [274.417s] Deallocating buffers... [0.124502s] Opening temporary output file... [0.00121s] Computing alignments... [1772.55s] Deallocating reference... [0.067553s] Loading reference sequences... [349.578s] Masking reference... [62.0507s] Building reference histograms... [11.7832s] Allocating buffers... [0.000135s] Initializing temporary storage... [0.004989s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.988s] Building query index... [8.15869s] Building seed filter... [1.13307s] Searching alignments... [468.271s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.0573s] Building query index... [9.14754s] Building seed filter... [1.19695s] Searching alignments... [423.745s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.8063s] Building query index... [9.43577s] Building seed filter... [1.14551s] Searching alignments... [384.18s] Processing query chunk 0, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.6215s] Building query index... [8.26833s] Building seed filter... [1.18862s] Searching alignments... [367.563s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.174s] Building query index... [7.37659s] Building seed filter... [1.13485s] Searching alignments... [280.298s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 1. Building reference index... [21.9413s] Building query index... [8.28256s] Building seed filter... [1.11747s] Searching alignments... [268.576s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.9261s] Building query index... [8.40871s] Building seed filter... [1.10737s] Searching alignments... [276.292s] Processing query chunk 0, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.6329s] Building query index... [7.46476s] Building seed filter... [1.1234s] Searching alignments... [262.015s] Deallocating buffers... [0.126177s] Opening temporary output file... [0.001979s] Computing alignments... [1634.3s] Deallocating reference... [0.066295s] Loading reference sequences... [181.986s] Masking reference... [22.9962s] Building reference histograms... [4.31654s] Allocating buffers... [0.000165s] Initializing temporary storage... [0.004236s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.14053s] Building query index... [9.11408s] Building seed filter... [0.679256s] Searching alignments... [229.944s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.06424s] Building query index... [9.15828s] Building seed filter... [0.6669s] Searching alignments... [200.264s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.28657s] Building query index... [9.36316s] Building seed filter... [0.68852s] Searching alignments... [176.142s] Processing query chunk 0, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.16868s] Building query index... [8.32997s] Building seed filter... [0.672767s] Searching alignments... [174.769s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 0. Building reference index... [6.98488s] Building query index... [7.31725s] Building seed filter... [0.652875s] Searching alignments... [129.718s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 1. Building reference index... [8.02661s] Building query index... [8.27251s] Building seed filter... [0.625766s] Searching alignments... [123.589s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.26111s] Building query index... [8.4638s] Building seed filter... [0.658646s] Searching alignments... [130.413s] Processing query chunk 0, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.08725s] Building query index... [7.3966s] Building seed filter... [0.66223s] Searching alignments... [119.916s] Deallocating buffers... [0.048574s] Opening temporary output file... [0.002434s] Computing alignments... [750.605s] Deallocating reference... [0.029516s] Loading reference sequences... [3.8e-05s] Deallocating buffers... [0.031587s] Joining output blocks... [505.985s] Deallocating queries... [0.093169s] Loading query sequences... [54.338s] Masking queries... [34.2303s] Building query seed set... [8e-06s] Building query histograms... [2.14742s] Allocating buffers... [0.002074s] Loading reference sequences... [524.034s] Masking reference... [63.9061s] Building reference histograms... [10.7377s] Allocating buffers... [0.000171s] Initializing temporary storage... [0.004767s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 0. Building reference index... [19.5874s] Building query index... [2.15262s] Building seed filter... [0.886448s] Searching alignments... [147.538s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 1. Building reference index... [22.2382s] Building query index... [2.39778s] Building seed filter... [0.920159s] Searching alignments... [129.603s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 2. Building reference index... [22.7599s] Building query index... [2.44468s] Building seed filter... [0.925829s] Searching alignments... [112.429s] Processing query chunk 1, reference chunk 0, shape 0, index chunk 3. Building reference index... [19.6747s] Building query index... [2.18564s] Building seed filter... [0.917146s] Searching alignments... [113.778s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 0. Building reference index... [19.1323s] Building query index... [1.95421s] Building seed filter... [0.927931s] Searching alignments... [83.6175s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 1. Building reference index... [22.0536s] Building query index... [2.21458s] Building seed filter... [0.918157s] Searching alignments... [80.8431s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 2. Building reference index... [22.6173s] Building query index... [2.22053s] Building seed filter... [0.931727s] Searching alignments... [86.675s] Processing query chunk 1, reference chunk 0, shape 1, index chunk 3. Building reference index... [19.4949s] Building query index... [1.96387s] Building seed filter... [0.913295s] Searching alignments... [78.0266s] Deallocating buffers... [0.127656s] Opening temporary output file... [0.001231s] Computing alignments... [498.635s] Deallocating reference... [0.079603s] Loading reference sequences... [492.318s] Masking reference... [62.0477s] Building reference histograms... [11.5646s] Allocating buffers... [0.000177s] Initializing temporary storage... [0.005417s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 0. Building reference index... [19.5656s] Building query index... [2.14684s] Building seed filter... [0.894988s] Searching alignments... [123.515s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 1. Building reference index... [22.145s] Building query index... [2.42458s] Building seed filter... [0.932595s] Searching alignments... [109.705s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 2. Building reference index... [22.6805s] Building query index... [2.48067s] Building seed filter... [0.907614s] Searching alignments... [100.187s] Processing query chunk 1, reference chunk 1, shape 0, index chunk 3. Building reference index... [19.6339s] Building query index... [2.20274s] Building seed filter... [0.940044s] Searching alignments... [95.3761s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 0. Building reference index... [19.1211s] Building query index... [2.07327s] Building seed filter... [0.929072s] Searching alignments... [73.8352s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 1. Building reference index... [21.9728s] Building query index... [2.159s] Building seed filter... [0.903562s] Searching alignments... [70.9791s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 2. Building reference index... [22.4493s] Building query index... [2.21078s] Building seed filter... [0.934875s] Searching alignments... [72.3921s] Processing query chunk 1, reference chunk 1, shape 1, index chunk 3. Building reference index... [19.5431s] Building query index... [1.9706s] Building seed filter... [0.887588s] Searching alignments... [69.4801s] Deallocating buffers... [0.123296s] Opening temporary output file... [0.001339s] Computing alignments... [442.649s] Deallocating reference... [0.07368s] Loading reference sequences... [481.008s] Masking reference... [61.8246s] Building reference histograms... [10.6605s] Allocating buffers... [0.000183s] Initializing temporary storage... [0.004152s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 0. Building reference index... [19.5544s] Building query index... [2.15907s] Building seed filter... [0.89382s] Searching alignments... [137.368s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 1. Building reference index... [22.12s] Building query index... [2.4041s] Building seed filter... [0.903956s] Searching alignments... [120.009s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 2. Building reference index... [22.5815s] Building query index... [2.47363s] Building seed filter... [0.925539s] Searching alignments... [102.368s] Processing query chunk 1, reference chunk 2, shape 0, index chunk 3. Building reference index... [19.6844s] Building query index... [2.15729s] Building seed filter... [0.900085s] Searching alignments... [105.065s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 0. Building reference index... [19.125s] Building query index... [1.95184s] Building seed filter... [0.894703s] Searching alignments... [77.9042s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 1. Building reference index... [21.7899s] Building query index... [2.19622s] Building seed filter... [0.893855s] Searching alignments... [74.8933s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 2. Building reference index... [22.7951s] Building query index... [2.21399s] Building seed filter... [0.878035s] Searching alignments... [81.8373s] Processing query chunk 1, reference chunk 2, shape 1, index chunk 3. Building reference index... [19.415s] Building query index... [1.96996s] Building seed filter... [0.91358s] Searching alignments... [72.5804s] Deallocating buffers... [0.128376s] Opening temporary output file... [0.000567s] Computing alignments... [463.398s] Deallocating reference... [0.07507s] Loading reference sequences... [430.499s] Masking reference... [61.7729s] Building reference histograms... [11.4024s] Allocating buffers... [0.000203s] Initializing temporary storage... [0.004149s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 0. Building reference index... [19.6656s] Building query index... [2.14135s] Building seed filter... [0.890715s] Searching alignments... [145.869s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 1. Building reference index... [22.2333s] Building query index... [2.38875s] Building seed filter... [0.916219s] Searching alignments... [127.341s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 2. Building reference index... [22.8537s] Building query index... [2.46967s] Building seed filter... [0.928811s] Searching alignments... [106.399s] Processing query chunk 1, reference chunk 3, shape 0, index chunk 3. Building reference index... [19.7699s] Building query index... [2.16145s] Building seed filter... [0.935666s] Searching alignments... [111.227s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 0. Building reference index... [19.3779s] Building query index... [1.96534s] Building seed filter... [0.89484s] Searching alignments... [81.8769s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 1. Building reference index... [21.9571s] Building query index... [2.16978s] Building seed filter... [0.89508s] Searching alignments... [78.8236s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 2. Building reference index... [22.7813s] Building query index... [2.21592s] Building seed filter... [0.903088s] Searching alignments... [86.4302s] Processing query chunk 1, reference chunk 3, shape 1, index chunk 3. Building reference index... [19.5194s] Building query index... [1.97701s] Building seed filter... [0.893711s] Searching alignments... [74.5227s] Deallocating buffers... [0.117921s] Opening temporary output file... [0.001143s] Computing alignments... [484.176s] Deallocating reference... [0.065422s] Loading reference sequences... [398.926s] Masking reference... [61.7329s] Building reference histograms... [11.1173s] Allocating buffers... [0.00018s] Initializing temporary storage... [0.005255s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 0. Building reference index... [19.6167s] Building query index... [2.16574s] Building seed filter... [0.874132s] Searching alignments... [125.317s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 1. Building reference index... [22.1267s] Building query index... [2.41215s] Building seed filter... [0.900287s] Searching alignments... [113.56s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 2. Building reference index... [22.9648s] Building query index... [2.476s] Building seed filter... [0.914462s] Searching alignments... [103.194s] Processing query chunk 1, reference chunk 4, shape 0, index chunk 3. Building reference index... [19.6942s] Building query index... [2.1837s] Building seed filter... [0.962622s] Searching alignments... [99.1552s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 0. Building reference index... [19.2487s] Building query index... [1.9471s] Building seed filter... [0.920086s] Searching alignments... [76.6845s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 1. Building reference index... [21.9825s] Building query index... [2.18796s] Building seed filter... [0.911516s] Searching alignments... [73.4362s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 2. Building reference index... [22.5289s] Building query index... [2.21674s] Building seed filter... [0.876634s] Searching alignments... [75.6056s] Processing query chunk 1, reference chunk 4, shape 1, index chunk 3. Building reference index... [19.5852s] Building query index... [2.03656s] Building seed filter... [0.904973s] Searching alignments... [71.7897s] Deallocating buffers... [0.12621s] Opening temporary output file... [0.00201s] Computing alignments... [435.579s] Deallocating reference... [0.064689s] Loading reference sequences... [176.944s] Masking reference... [23.3772s] Building reference histograms... [4.29159s] Allocating buffers... [0.000172s] Initializing temporary storage... [0.00441s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 0. Building reference index... [7.2042s] Building query index... [2.16058s] Building seed filter... [0.43082s] Searching alignments... [62.7468s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 1. Building reference index... [8.09477s] Building query index... [2.37924s] Building seed filter... [0.44192s] Searching alignments... [54.0837s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 2. Building reference index... [8.29112s] Building query index... [2.48359s] Building seed filter... [0.445262s] Searching alignments... [47.0184s] Processing query chunk 1, reference chunk 5, shape 0, index chunk 3. Building reference index... [7.17837s] Building query index... [2.17418s] Building seed filter... [0.445542s] Searching alignments... [47.4361s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 0. Building reference index... [6.97809s] Building query index... [1.94707s] Building seed filter... [0.430922s] Searching alignments... [35.2871s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 1. Building reference index... [7.98326s] Building query index... [2.16728s] Building seed filter... [0.431752s] Searching alignments... [34.215s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 2. Building reference index... [8.24934s] Building query index... [2.20888s] Building seed filter... [0.426506s] Searching alignments... [35.5321s] Processing query chunk 1, reference chunk 5, shape 1, index chunk 3. Building reference index... [7.17278s] Building query index... [1.98105s] Building seed filter... [0.430184s] Searching alignments... [32.9685s] Deallocating buffers... [0.050963s] Opening temporary output file... [0.001744s] Computing alignments... [204.71s] Deallocating reference... [0.029353s] Loading reference sequences... [0.02535s] Deallocating buffers... [0.009134s] Joining output blocks... [131.298s] Deallocating queries... [0.030954s] Loading query sequences... [2.6e-05s] Closing the input file... [4.9e-05s] Closing the output file... [3.72523s] Closing the database file... [4.5e-05s] Deallocating taxonomy... [2e-05s] Total time = 40358.8s Reported 1284797576 pairwise alignments, 1284799070 HSPs. 49610002 queries aligned.