Version MEGAN Community Edition (version 6.17.0, built 7 Aug 2019) Copyright (C) 2019 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. This is free software, licensed under the terms of the GNU General Public License, Version 3. Sources available at: https://github.com/danielhuson/megan-ce Java version: 11.0.5 Opening startup files Loading ncbi.map: 2,127,529 Loading ncbi.tre: 2,127,533 Induced tree has 2,127,533 of 2,127,533 nodes Executing: show window=ImportBlast; Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading interpro2go.map: 13,354 Loading interpro2go.tre: 28,930 Loading seed.map: 13,662 Loading seed.tre: 21,085 Executing: load mapFile='/home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin' mapType=Accession cName=Taxonomy; Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Executing: load mapFile='/home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin' mapType=Accession cName=EGGNOG; Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Executing: load mapFile='/home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin' mapType=Accession cName=INTERPRO2GO; Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin Executing: load mapFile='/home/sam/data/databases/MEGAN/acc2seed-May2015XX.abin' mapType=Accession cName=SEED; Opening file: /home/sam/data/databases/MEGAN/acc2seed-May2015XX.abin Executing: import blastFile='/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_1_S3_L002_R1_001_val_1_val_1_val_1.blastx.daa', '/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_1_S3_L002_R2_001_val_2_val_2_val_2.blastx.daa' meganFile='/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_1_S3_L002_R1.rma6' useCompression=true format=DAA mode=BlastX maxMatches=100 minScore=50.0 maxExpected=0.01 minPercentIdentity=0.0 topPercent=10.0 minSupportPercent=0.05 minSupport=1 lcaAlgorithm=naive minPercentReadToCover=0.0 minPercentReferenceToCover=0.0 minComplexity=0.0 useIdentityFilter=false readAssignmentMode=readCount fNames=EGGNOG INTERPRO2GO SEED; Classifications: Taxonomy,SEED,EGGNOG,INTERPRO2GO Parsing file: /media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_1_S3_L002_R1_001_val_1_val_1_val_1.blastx.daa Parsing file: /media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_1_S3_L002_R2_001_val_2_val_2_val_2.blastx.daa Total reads: 78,338,406 Alignments: 716,646,068 Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Total reads: 78,338,406 With hits: 78,338,406 Alignments: 716,646,068 Assig. Taxonomy: 77,841,770 Assig. SEED: 16,122,782 Assig. EGGNOG: 20,434,940 Assig. INTERPRO2GO: 27,875,569 MinSupport set to: 39169 Min-supp. changes: 33,381 Numb. Tax. classes: 336 Numb. SEED classes: 4,467 Numb. EGG. classes: 6,911 Numb. INT. classes: 10,398 Class. Taxonomy: 336 Class. SEED: 4,467 Class. EGGNOG: 6,911 Class. INTERPRO2GO: 10,398 Info: Command completed (137962s): import blastFile='/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_1_S3_L002_R1_001_val_1_val_1... Induced tree has 356 of 2,127,533 nodes Induced tree has 356 of 2,127,533 nodes Executing: close what=current; Executing: quit; Induced tree has 2,127,533 of 2,127,533 nodes Executing: show window=ImportBlast; Executing: load mapFile='/home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin' mapType=Accession cName=Taxonomy; Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Executing: load mapFile='/home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin' mapType=Accession cName=EGGNOG; Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Executing: load mapFile='/home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin' mapType=Accession cName=INTERPRO2GO; Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin Executing: load mapFile='/home/sam/data/databases/MEGAN/acc2seed-May2015XX.abin' mapType=Accession cName=SEED; Opening file: /home/sam/data/databases/MEGAN/acc2seed-May2015XX.abin Executing: import blastFile='/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_2_S4_L002_R1_001_val_1_val_1_val_1.blastx.daa', '/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_2_S4_L002_R2_001_val_2_val_2_val_2.blastx.daa' meganFile='/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_2_S4_L002_R1.rma6' useCompression=true format=DAA mode=BlastX maxMatches=100 minScore=50.0 maxExpected=0.01 minPercentIdentity=0.0 topPercent=10.0 minSupportPercent=0.05 minSupport=1 lcaAlgorithm=naive minPercentReadToCover=0.0 minPercentReferenceToCover=0.0 minComplexity=0.0 useIdentityFilter=false readAssignmentMode=readCount fNames=EGGNOG INTERPRO2GO SEED; Classifications: Taxonomy,SEED,EGGNOG,INTERPRO2GO Parsing file: /media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_2_S4_L002_R1_001_val_1_val_1_val_1.blastx.daa Parsing file: /media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_2_S4_L002_R2_001_val_2_val_2_val_2.blastx.daa Total reads: 80,708,846 Alignments: 652,793,490 Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Total reads: 80,708,846 With hits: 80,708,846 Alignments: 652,793,490 Assig. Taxonomy: 80,314,195 Assig. SEED: 13,523,999 Assig. EGGNOG: 16,850,796 Assig. INTERPRO2GO: 25,780,479 MinSupport set to: 40354 Min-supp. changes: 32,363 Numb. Tax. classes: 291 Numb. SEED classes: 4,341 Numb. EGG. classes: 6,545 Numb. INT. classes: 10,077 Class. Taxonomy: 291 Class. SEED: 4,341 Class. EGGNOG: 6,545 Class. INTERPRO2GO: 10,077 Info: Command completed (160280s): import blastFile='/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_2_S4_L002_R1_001_val_1_val_1... Induced tree has 309 of 2,127,533 nodes Induced tree has 309 of 2,127,533 nodes Executing: show window=ImportBlast; Executing: show window=ImportBlast; Executing: load mapFile='/home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin' mapType=Accession cName=Taxonomy; Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Executing: load mapFile='/home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin' mapType=Accession cName=EGGNOG; Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Executing: load mapFile='/home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin' mapType=Accession cName=INTERPRO2GO; Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin Executing: load mapFile='/home/sam/data/databases/MEGAN/acc2seed-May2015XX.abin' mapType=Accession cName=SEED; Opening file: /home/sam/data/databases/MEGAN/acc2seed-May2015XX.abin Executing: import blastFile='/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_3_S1_L002_R1_001_val_1_val_1_val_1.blastx.daa', '/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_3_S1_L002_R2_001_val_2_val_2_val_2.blastx.daa' meganFile='/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_3_S1_L002_R1.rma6' useCompression=true format=DAA mode=BlastX maxMatches=100 minScore=50.0 maxExpected=0.01 minPercentIdentity=0.0 topPercent=10.0 minSupportPercent=0.05 minSupport=1 lcaAlgorithm=naive minPercentReadToCover=0.0 minPercentReferenceToCover=0.0 minComplexity=0.0 useIdentityFilter=false readAssignmentMode=readCount fNames=EGGNOG INTERPRO2GO SEED; Executing: 'import''blastFile''=''/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_3_S1_L002_R1_001_val_1_val_1_val_1.blastx.daa'',''/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_3_S1_L002_R2_001_val_2_val_2_val_2.blastx.daa''meganFile''=''/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_3_S1_L002_R1.rma6''useCompression''=''true''format''=''DAA''mode''=''BlastX''maxMatches''=''100''minScore''=''50.0''maxExpected''=''0.01''minPercentIdentity''=''0.0''topPercent''=''10.0''minSupportPercent''=''0.05''minSupport''=''1''lcaAlgorithm''=''naive''minPercentReadToCover''=''0.0''minPercentReferenceToCover''=''0.0''minComplexity''=''0.0''useIdentityFilter''=''false''readAssignmentMode''=''readCount''fNames''=''EGGNOG''INTERPRO2GO''SEED'; Classifications: Taxonomy,SEED,EGGNOG,INTERPRO2GO Parsing file: /media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_3_S1_L002_R1_001_val_1_val_1_val_1.blastx.daa Parsing file: /media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_3_S1_L002_R2_001_val_2_val_2_val_2.blastx.daa Total reads: 41,066,115 Alignments: 378,819,612 Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Total reads: 41,066,115 With hits: 41,066,115 Alignments: 378,819,612 Assig. Taxonomy: 40,575,952 Assig. SEED: 4,926,692 Assig. EGGNOG: 6,694,944 Assig. INTERPRO2GO: 9,729,258 MinSupport set to: 20533 Min-supp. changes: 32,224 Numb. Tax. classes: 366 Numb. SEED classes: 4,976 Numb. EGG. classes: 8,589 Numb. INT. classes: 10,435 Class. Taxonomy: 366 Class. SEED: 4,976 Class. EGGNOG: 8,589 Class. INTERPRO2GO: 10,435 Info: Command completed (69820s): 'import''blastFile''=''/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_3_S1_L002_R1_001_val_1_v... Induced tree has 387 of 2,127,533 nodes Induced tree has 387 of 2,127,533 nodes Executing: show window=ImportBlast; Executing: load mapFile='/home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin' mapType=Accession cName=Taxonomy; Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Executing: load mapFile='/home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin' mapType=Accession cName=EGGNOG; Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Executing: load mapFile='/home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin' mapType=Accession cName=INTERPRO2GO; Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin Executing: load mapFile='/home/sam/data/databases/MEGAN/acc2seed-May2015XX.abin' mapType=Accession cName=SEED; Opening file: /home/sam/data/databases/MEGAN/acc2seed-May2015XX.abin Executing: import blastFile='/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_5_S6_L002_R1_001_val_1_val_1_val_1.blastx.daa', '/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_5_S6_L002_R2_001_val_2_val_2_val_2.blastx.daa' meganFile='/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_5_S6_L002_R1.rma6' useCompression=true format=DAA mode=BlastX maxMatches=100 minScore=50.0 maxExpected=0.01 minPercentIdentity=0.0 topPercent=10.0 minSupportPercent=0.05 minSupport=1 lcaAlgorithm=naive minPercentReadToCover=0.0 minPercentReferenceToCover=0.0 minComplexity=0.0 useIdentityFilter=false readAssignmentMode=readCount fNames=EGGNOG INTERPRO2GO SEED; Executing: 'import''blastFile''=''/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_5_S6_L002_R1_001_val_1_val_1_val_1.blastx.daa'',''/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_5_S6_L002_R2_001_val_2_val_2_val_2.blastx.daa''meganFile''=''/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_5_S6_L002_R1.rma6''useCompression''=''true''format''=''DAA''mode''=''BlastX''maxMatches''=''100''minScore''=''50.0''maxExpected''=''0.01''minPercentIdentity''=''0.0''topPercent''=''10.0''minSupportPercent''=''0.05''minSupport''=''1''lcaAlgorithm''=''naive''minPercentReadToCover''=''0.0''minPercentReferenceToCover''=''0.0''minComplexity''=''0.0''useIdentityFilter''=''false''readAssignmentMode''=''readCount''fNames''=''EGGNOG''INTERPRO2GO''SEED'; Classifications: Taxonomy,SEED,EGGNOG,INTERPRO2GO Parsing file: /media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_5_S6_L002_R1_001_val_1_val_1_val_1.blastx.daa Parsing file: /media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_5_S6_L002_R2_001_val_2_val_2_val_2.blastx.daa Total reads: 80,636,117 Alignments: 610,111,738 Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Total reads: 80,636,117 With hits: 80,636,117 Alignments: 610,111,738 Assig. Taxonomy: 80,210,772 Assig. SEED: 12,468,562 Assig. EGGNOG: 15,199,218 Assig. INTERPRO2GO: 23,016,205 MinSupport set to: 40318 Min-supp. changes: 30,513 Numb. Tax. classes: 234 Numb. SEED classes: 4,063 Numb. EGG. classes: 5,346 Numb. INT. classes: 9,382 Class. Taxonomy: 234 Class. SEED: 4,063 Class. EGGNOG: 5,346 Class. INTERPRO2GO: 9,382 Info: Command completed (135051s): 'import''blastFile''=''/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_5_S6_L002_R1_001_val_1_... Induced tree has 244 of 2,127,533 nodes Induced tree has 244 of 2,127,533 nodes Executing: show window=ImportBlast; Executing: load mapFile='/home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin' mapType=Accession cName=Taxonomy; Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Executing: load mapFile='/home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin' mapType=Accession cName=EGGNOG; Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Executing: load mapFile='/home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin' mapType=Accession cName=INTERPRO2GO; Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin Executing: load mapFile='/home/sam/data/databases/MEGAN/acc2seed-May2015XX.abin' mapType=Accession cName=SEED; Opening file: /home/sam/data/databases/MEGAN/acc2seed-May2015XX.abin Executing: import blastFile='/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_6_S5_L002_R1_001_val_1_val_1_val_1.blastx.daa', '/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_6_S5_L002_R2_001_val_2_val_2_val_2.blastx.daa' meganFile='/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_6_S5_L002_R1.rma6' useCompression=true format=DAA mode=BlastX maxMatches=100 minScore=50.0 maxExpected=0.01 minPercentIdentity=0.0 topPercent=10.0 minSupportPercent=0.05 minSupport=1 lcaAlgorithm=naive minPercentReadToCover=0.0 minPercentReferenceToCover=0.0 minComplexity=0.0 useIdentityFilter=false readAssignmentMode=readCount fNames=EGGNOG INTERPRO2GO SEED; Executing: 'import''blastFile''=''/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_6_S5_L002_R1_001_val_1_val_1_val_1.blastx.daa'',''/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_6_S5_L002_R2_001_val_2_val_2_val_2.blastx.daa''meganFile''=''/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_6_S5_L002_R1.rma6''useCompression''=''true''format''=''DAA''mode''=''BlastX''maxMatches''=''100''minScore''=''50.0''maxExpected''=''0.01''minPercentIdentity''=''0.0''topPercent''=''10.0''minSupportPercent''=''0.05''minSupport''=''1''lcaAlgorithm''=''naive''minPercentReadToCover''=''0.0''minPercentReferenceToCover''=''0.0''minComplexity''=''0.0''useIdentityFilter''=''false''readAssignmentMode''=''readCount''fNames''=''EGGNOG''INTERPRO2GO''SEED'; Classifications: Taxonomy,SEED,EGGNOG,INTERPRO2GO Parsing file: /media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_6_S5_L002_R1_001_val_1_val_1_val_1.blastx.daa Parsing file: /media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_6_S5_L002_R2_001_val_2_val_2_val_2.blastx.daa Total reads: 83,337,226 Alignments: 723,578,530 Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Total reads: 83,337,226 With hits: 83,337,226 Alignments: 723,578,530 Assig. Taxonomy: 82,848,421 Assig. SEED: 15,690,079 Assig. EGGNOG: 19,281,243 Assig. INTERPRO2GO: 28,023,676 MinSupport set to: 41668 Min-supp. changes: 32,047 Numb. Tax. classes: 259 Numb. SEED classes: 4,298 Numb. EGG. classes: 6,146 Numb. INT. classes: 9,756 Class. Taxonomy: 259 Class. SEED: 4,298 Class. EGGNOG: 6,146 Class. INTERPRO2GO: 9,756 Info: Command completed (141261s): 'import''blastFile''=''/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_6_S5_L002_R1_001_val_1_... Induced tree has 273 of 2,127,533 nodes Induced tree has 273 of 2,127,533 nodes Executing: show window=ImportBlast; Executing: load mapFile='/home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin' mapType=Accession cName=Taxonomy; Opening file: /home/sam/data/databases/MEGAN/prot_acc2tax-Jul2019X1.abin Executing: load mapFile='/home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin' mapType=Accession cName=EGGNOG; Opening file: /home/sam/data/databases/MEGAN/acc2eggnog-Jul2019X.abin Executing: load mapFile='/home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin' mapType=Accession cName=INTERPRO2GO; Opening file: /home/sam/data/databases/MEGAN/acc2interpro-Jul2019X.abin Executing: load mapFile='/home/sam/data/databases/MEGAN/acc2seed-May2015XX.abin' mapType=Accession cName=SEED; Opening file: /home/sam/data/databases/MEGAN/acc2seed-May2015XX.abin Executing: import blastFile='/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_7_S2_L002_R1_001_val_1_val_1_val_1.blastx.daa', '/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_7_S2_L002_R2_001_val_2_val_2_val_2.blastx.daa' meganFile='/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_7_S2_L002_R1.rma6' useCompression=true format=DAA mode=BlastX maxMatches=100 minScore=50.0 maxExpected=0.01 minPercentIdentity=0.0 topPercent=10.0 minSupportPercent=0.05 minSupport=1 lcaAlgorithm=naive minPercentReadToCover=0.0 minPercentReferenceToCover=0.0 minComplexity=0.0 useIdentityFilter=false readAssignmentMode=readCount fNames=EGGNOG INTERPRO2GO SEED; Executing: 'import''blastFile''=''/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_7_S2_L002_R1_001_val_1_val_1_val_1.blastx.daa'',''/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_7_S2_L002_R2_001_val_2_val_2_val_2.blastx.daa''meganFile''=''/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_7_S2_L002_R1.rma6''useCompression''=''true''format''=''DAA''mode''=''BlastX''maxMatches''=''100''minScore''=''50.0''maxExpected''=''0.01''minPercentIdentity''=''0.0''topPercent''=''10.0''minSupportPercent''=''0.05''minSupport''=''1''lcaAlgorithm''=''naive''minPercentReadToCover''=''0.0''minPercentReferenceToCover''=''0.0''minComplexity''=''0.0''useIdentityFilter''=''false''readAssignmentMode''=''readCount''fNames''=''EGGNOG''INTERPRO2GO''SEED'; Classifications: Taxonomy,SEED,EGGNOG,INTERPRO2GO Parsing file: /media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_7_S2_L002_R1_001_val_1_val_1_val_1.blastx.daa Parsing file: /media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_7_S2_L002_R2_001_val_2_val_2_val_2.blastx.daa Total reads: 101,937,343 Alignments: 870,534,175 Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Total reads: 101,937,343 With hits: 101,937,343 Alignments: 870,534,175 Assig. Taxonomy: 101,453,217 Assig. SEED: 15,891,350 Assig. EGGNOG: 19,925,456 Assig. INTERPRO2GO: 33,811,750 MinSupport set to: 50968 Min-supp. changes: 32,696 Numb. Tax. classes: 261 Numb. SEED classes: 4,339 Numb. EGG. classes: 6,201 Numb. INT. classes: 9,800 Class. Taxonomy: 261 Class. SEED: 4,339 Class. EGGNOG: 6,201 Class. INTERPRO2GO: 9,800 Info: Command completed (175787s): 'import''blastFile''=''/media/sam/toaster/20190925_metagenomics_DIAMOND_blastx/Library_Geoduck_MG_7_S2_L002_R1_001_val_1_... Induced tree has 274 of 2,127,533 nodes Induced tree has 274 of 2,127,533 nodes