================================================================ Program: CD-HIT, V4.8.1 (+OpenMP), Jul 24 2019, 13:13:52 Command: /gscratch/srlab/programs/cd-hit-v4.8.1-2019-0228/cd-hit-est -o 20180827_assembly.cdhit -c 0.98 -i /gscratch/srlab/sam/data/P_generosa/transcriptomes/20180827_assembly/Trinity.fasta -p 1 -d 0 -b 3 -T 27 -M 0 Started: Mon Jul 29 11:58:13 2019 ================================================================ Output ---------------------------------------------------------------- total seq: 1363959 longest and shortest : 36432 and 163 Total letters: 887346111 Sequences have been sorted Approximated minimal memory consumption: Sequence : 1077M Buffer : 27 X 31M = 842M Table : 2 X 38M = 77M Miscellaneous : 22M Total : 2020M Table limit with the given memory limit: Max number of representatives: 458974 Max number of word counting entries: 60494642 # comparing sequences from 0 to 425 ---------- new table with 254 representatives # comparing sequences from 425 to 17557 ..................... ---------- 16015 remaining sequences to the next cycle ---------- new table with 734 representatives # comparing sequences from 1542 to 18966 ...................... ---------- 15177 remaining sequences to the next cycle ---------- new table with 1456 representatives # comparing sequences from 3789 to 23655 ...................... ---------- 16323 remaining sequences to the next cycle ---------- new table with 2418 representatives # comparing sequences from 7332 to 29560 ....................... .......... 10000 finished 6675 clusters .. ---------- 16538 remaining sequences to the next cycle ---------- new table with 3850 representatives # comparing sequences from 13022 to 38987 .......................... 100.0% ---------- 18575 remaining sequences to the next cycle ---------- new table with 5080 representatives # comparing sequences from 20412 to 50563 ............................. ---------- 21090 remaining sequences to the next cycle ---------- new table with 6370 representatives # comparing sequences from 29473 to 64160 .............................. .......... 40000 finished 27605 clusters ---------- 23819 remaining sequences to the next cycle ---------- new table with 7684 representatives # comparing sequences from 40341 to 80078 ............................ .......... 50000 finished 34768 clusters .. ---------- 27638 remaining sequences to the next cycle ---------- new table with 8690 representatives # comparing sequences from 52440 to 97664 ......................... .......... 60000 finished 42039 clusters ..... ---------- 31590 remaining sequences to the next cycle ---------- new table with 10051 representatives # comparing sequences from 66074 to 110828 .................... .......... 70000 finished 49469 clusters .......... .......... 80000 finished 56924 clusters . ---------- 29662 remaining sequences to the next cycle ---------- new table with 11227 representatives # comparing sequences from 81166 to 125400 ........................... .......... 90000 finished 64488 clusters ...... ---------- 28417 remaining sequences to the next cycle ---------- new table with 12051 representatives # comparing sequences from 96983 to 140671 ....................... .......... 100000 finished 72167 clusters .......... ---------- 25883 remaining sequences to the next cycle ---------- new table with 13697 representatives # comparing sequences from 114788 to 157862 ........................ .......... 120000 finished 87711 clusters ........ .......... 130000 finished 95537 clusters ... ---------- 23298 remaining sequences to the next cycle ---------- new table with 15638 representatives # comparing sequences from 134564 to 176956 .......................... .......... 140000 finished 103561 clusters .............. ---------- 21829 remaining sequences to the next cycle ---------- new table with 16504 representatives # comparing sequences from 155127 to 196810 ....................... .......... 160000 finished 119687 clusters ........ .......... 170000 finished 127892 clusters ..... ---------- 20456 remaining sequences to the next cycle ---------- new table with 17447 representatives # comparing sequences from 176354 to 217305 ........................ .......... 180000 finished 136181 clusters ...... .......... 190000 finished 144553 clusters ....... ---------- 20099 remaining sequences to the next cycle ---------- new table with 17497 representatives # comparing sequences from 197206 to 237438 ...................... .......... 200000 finished 153004 clusters ......... .......... 210000 finished 161434 clusters ........ ---------- 18526 remaining sequences to the next cycle ---------- new table with 18387 representatives # comparing sequences from 218912 to 258396 ...................... .......... 220000 finished 169981 clusters ......... .......... 230000 finished 178490 clusters .......... .......... 240000 finished 187144 clusters . ---------- 16378 remaining sequences to the next cycle ---------- new table with 19861 representatives # comparing sequences from 242018 to 280705 ........................ .......... 250000 finished 195838 clusters ............. ---------- 13809 remaining sequences to the next cycle ---------- new table with 21490 representatives # comparing sequences from 266896 to 304725 ....................... .......... 270000 finished 213118 clusters .......... .......... 280000 finished 221853 clusters ........... ---------- 11641 remaining sequences to the next cycle ---------- new table with 22986 representatives # comparing sequences from 293084 to 330010 ........................... .......... 300000 finished 239450 clusters .......... .......... 310000 finished 248235 clusters ......... .......... 320000 finished 257035 clusters ---------- 9394 remaining sequences to the next cycle ---------- new table with 24218 representatives # comparing sequences from 320616 to 356593 .............................. .......... 330000 finished 265894 clusters ......... .......... 340000 finished 274806 clusters ........ ---------- 7926 remaining sequences to the next cycle ---------- new table with 24951 representatives # comparing sequences from 348667 to 383677 ..................... .......... 350000 finished 283741 clusters .................. .......... 370000 finished 301636 clusters ...... ---------- 6555 remaining sequences to the next cycle ---------- new table with 25438 representatives # comparing sequences from 377122 to 411150 ....................... .......... 380000 finished 310550 clusters .......... .......... 390000 finished 319529 clusters ......... .......... 400000 finished 328506 clusters ...... 100.0% ---------- 4891 remaining sequences to the next cycle ---------- new table with 26173 representatives # comparing sequences from 406259 to 439283 ....................... .......... 410000 finished 337539 clusters .......... .......... 420000 finished 346621 clusters ......... .......... 430000 finished 355706 clusters ..... ---------- 3701 remaining sequences to the next cycle ---------- new table with 26589 representatives # comparing sequences from 435582 to 467595 ......................... .......... 440000 finished 364744 clusters ........ .......... 450000 finished 373784 clusters .......... .......... 460000 finished 382829 clusters .... ---------- 3592 remaining sequences to the next cycle ---------- new table with 25679 representatives # comparing sequences from 464003 to 495035 ......................... .......... 470000 finished 391865 clusters .......... .......... 480000 finished 400924 clusters ....... .......... 490000 finished 409906 clusters .. ---------- 1293 remaining sequences to the next cycle ---------- new table with 26860 representatives # comparing sequences from 493742 to 523749 .......................... .......... 500000 finished 418953 clusters ......... .......... 510000 finished 428034 clusters .......... .......... 520000 finished 437100 clusters . ---------- 2646 remaining sequences to the next cycle ---------- new table with 24827 representatives # comparing sequences from 521103 to 550167 ............................. .......... 530000 finished 446127 clusters .......... .......... 540000 finished 455229 clusters ..... ---------- 3456 remaining sequences to the next cycle ---------- new table with 23210 representatives # comparing sequences from 546711 to 574891 ........................ .......... 550000 finished 464338 clusters ................... .......... 570000 finished 482629 clusters 100.0% ---------- 4797 remaining sequences to the next cycle ---------- new table with 21401 representatives # comparing sequences from 570094 to 597468 .............................. .......... 580000 finished 491752 clusters ......... .......... 590000 finished 500903 clusters ..... ---------- 2112 remaining sequences to the next cycle ---------- new table with 23038 representatives # comparing sequences from 595356 to 621859 ......................... .......... 600000 finished 510031 clusters .......... .......... 610000 finished 519191 clusters ........ ---------- 3221 remaining sequences to the next cycle ---------- new table with 21353 representatives # comparing sequences from 618638 to 644338 .................... .......... 620000 finished 528351 clusters ........ .......... 630000 finished 537480 clusters .......... .......... 640000 finished 546637 clusters .. 100.0% ---------- 2179 remaining sequences to the next cycle ---------- new table with 21499 representatives # comparing sequences from 642159 to 667048 .......................... .......... 650000 finished 555777 clusters .......... .......... 660000 finished 565013 clusters .. ---------- 4082 remaining sequences to the next cycle ---------- new table with 19145 representatives # comparing sequences from 662966 to 687138 .......................... .......... 670000 finished 574237 clusters .......... .......... 680000 finished 583406 clusters ..... ---------- 2096 remaining sequences to the next cycle ---------- new table with 20268 representatives # comparing sequences from 685042 to 708452 ........................ .......... 690000 finished 592571 clusters .......... .......... 700000 finished 601729 clusters ... 100.0% ---------- 4030 remaining sequences to the next cycle ---------- new table with 17776 representatives # comparing sequences from 704422 to 727164 .......................... .......... 710000 finished 610918 clusters ......... .......... 720000 finished 620181 clusters ..... ---------- 1564 remaining sequences to the next cycle ---------- new table with 19502 representatives # comparing sequences from 725600 to 747612 ........................ .......... 730000 finished 629329 clusters .......... .......... 740000 finished 638559 clusters ....... ---------- 419 remaining sequences to the next cycle ---------- new table with 19929 representatives # comparing sequences from 747193 to 768460 ....................... .......... 750000 finished 647834 clusters .......... .......... 760000 finished 657013 clusters ........ ---------- 286 remaining sequences to the next cycle ---------- new table with 19317 representatives # comparing sequences from 768174 to 788718 ..................... .......... 770000 finished 666275 clusters .......... .......... 780000 finished 675518 clusters ........ 99.7% 99.8% 99.9% 100.0%---------- new table with 19022 representatives # comparing sequences from 788718 to 808553 ..................... .......... 790000 finished 684794 clusters .......... .......... 800000 finished 694024 clusters ...... ---------- 2545 remaining sequences to the next cycle ---------- new table with 16033 representatives # comparing sequences from 806008 to 825247 ...................... .......... 810000 finished 703310 clusters .......... .......... 820000 finished 712559 clusters .... ---------- 961 remaining sequences to the next cycle ---------- new table with 16933 representatives # comparing sequences from 824286 to 842895 ......................... .......... 830000 finished 721847 clusters ........ .......... 840000 finished 731093 clusters .. 99.8% 99.9% 100.0%---------- new table with 17274 representatives # comparing sequences from 842895 to 860862 .......................... .......... 850000 finished 740360 clusters ......... .......... 860000 finished 749590 clusters 99.5% 99.6% 99.7% 99.8% 99.9%---------- new table with 16582 representatives # comparing sequences from 860862 to 878210 ............................ .......... 870000 finished 758842 clusters ........ 99.7% 99.8% 99.9%---------- new table with 16144 representatives # comparing sequences from 878210 to 894959 ..................... .......... 880000 finished 768132 clusters ......... .......... 890000 finished 777474 clusters .... ---------- 33 remaining sequences to the next cycle ---------- new table with 15575 representatives # comparing sequences from 894926 to 911099 ......................... .......... 900000 finished 786836 clusters ......... ---------- 2019 remaining sequences to the next cycle ---------- new table with 13225 representatives # comparing sequences from 909080 to 924765 ................... .......... 910000 finished 796225 clusters .......... .......... 920000 finished 805613 clusters . ---------- 3132 remaining sequences to the next cycle ---------- new table with 11802 representatives # comparing sequences from 921633 to 936885 ............................ .......... 930000 finished 814970 clusters ..... ---------- 1281 remaining sequences to the next cycle ---------- new table with 13132 representatives # comparing sequences from 935604 to 950374 ......................... .......... 940000 finished 824338 clusters ....... ---------- 2904 remaining sequences to the next cycle ---------- new table with 11112 representatives # comparing sequences from 947470 to 961831 ....................... .......... 950000 finished 833777 clusters ...... ---------- 3147 remaining sequences to the next cycle ---------- new table with 10515 representatives # comparing sequences from 958684 to 972659 ..................... .......... 960000 finished 843129 clusters .......... .......... 970000 finished 852565 clusters . ---------- 1644 remaining sequences to the next cycle ---------- new table with 11575 representatives # comparing sequences from 971015 to 984564 ............................. .......... 980000 finished 861962 clusters . ---------- 2649 remaining sequences to the next cycle ---------- new table with 10352 representatives # comparing sequences from 981915 to 995088 ............................ .......... 990000 finished 871477 clusters ... ---------- 1526 remaining sequences to the next cycle ---------- new table with 10994 representatives # comparing sequences from 993562 to 1006334 ........................... .......... 1000000 finished 880983 clusters ... ---------- 2640 remaining sequences to the next cycle ---------- new table with 9626 representatives # comparing sequences from 1003694 to 1016116 .......................... .......... 1010000 finished 890448 clusters ... ---------- 1635 remaining sequences to the next cycle ---------- new table with 10256 representatives # comparing sequences from 1014481 to 1026531 .......................... .......... 1020000 finished 899892 clusters .... ---------- 2261 remaining sequences to the next cycle ---------- new table with 9237 representatives # comparing sequences from 1024270 to 1035983 ......................... .......... 1030000 finished 909353 clusters ... ---------- 2917 remaining sequences to the next cycle ---------- new table with 8379 representatives # comparing sequences from 1033066 to 1044476 .......................... .......... 1040000 finished 918819 clusters . 100.0% ---------- 3034 remaining sequences to the next cycle ---------- new table with 7917 representatives # comparing sequences from 1041442 to 1052563 ........................... .......... 1050000 finished 928292 clusters ---------- 1915 remaining sequences to the next cycle ---------- new table with 8688 representatives # comparing sequences from 1050648 to 1061451 .............................. .......... 1060000 finished 937780 clusters ---------- 1161 remaining sequences to the next cycle ---------- new table with 9147 representatives # comparing sequences from 1060290 to 1070761 ........................... 100.0% ---------- 2131 remaining sequences to the next cycle ---------- new table with 7892 representatives # comparing sequences from 1068630 to 1078813 ..................... .......... 1070000 finished 947296 clusters ...... ---------- 2465 remaining sequences to the next cycle ---------- new table with 7378 representatives # comparing sequences from 1076348 to 1086265 ........................ .......... 1080000 finished 956818 clusters ... ---------- 2302 remaining sequences to the next cycle ---------- new table with 7233 representatives # comparing sequences from 1083963 to 1093618 ........................... .......... 1090000 finished 966360 clusters ---------- 2527 remaining sequences to the next cycle ---------- new table with 6834 representatives # comparing sequences from 1091091 to 1100500 .......................... ---------- 2523 remaining sequences to the next cycle ---------- new table with 6498 representatives # comparing sequences from 1097977 to 1107148 ...................... .......... 1100000 finished 975882 clusters ..... ---------- 1903 remaining sequences to the next cycle ---------- new table with 7026 representatives # comparing sequences from 1105245 to 1114166 ........................ .......... 1110000 finished 985496 clusters .. ---------- 1935 remaining sequences to the next cycle ---------- new table with 6665 representatives # comparing sequences from 1112231 to 1120911 ........................ ---------- 1530 remaining sequences to the next cycle ---------- new table with 6847 representatives # comparing sequences from 1119381 to 1127814 .................... .......... 1120000 finished 995054 clusters .... ---------- 2141 remaining sequences to the next cycle ---------- new table with 6080 representatives # comparing sequences from 1125673 to 1133889 ......................... .......... 1130000 finished 1004623 clusters .. ---------- 1508 remaining sequences to the next cycle ---------- new table with 6392 representatives # comparing sequences from 1132381 to 1140366 .......................... ---------- 1985 remaining sequences to the next cycle ---------- new table with 5759 representatives # comparing sequences from 1138381 to 1146159 ..................... .......... 1140000 finished 1014248 clusters .... ---------- 1444 remaining sequences to the next cycle ---------- new table with 6104 representatives # comparing sequences from 1144715 to 1152275 ......................... ---------- 2345 remaining sequences to the next cycle ---------- new table with 4999 representatives # comparing sequences from 1149930 to 1157310 ..................... .......... 1150000 finished 1023842 clusters ..... ---------- 1799 remaining sequences to the next cycle ---------- new table with 5351 representatives # comparing sequences from 1155511 to 1162698 ......................... .......... 1160000 finished 1033433 clusters ---------- 1850 remaining sequences to the next cycle ---------- new table with 5145 representatives # comparing sequences from 1160848 to 1167851 .......................... ---------- 1421 remaining sequences to the next cycle ---------- new table with 5403 representatives # comparing sequences from 1166430 to 1173241 ...................... .......... 1170000 finished 1043068 clusters . ---------- 1875 remaining sequences to the next cycle ---------- new table with 4724 representatives # comparing sequences from 1171366 to 1178007 ......................... ---------- 1907 remaining sequences to the next cycle ---------- new table with 4548 representatives # comparing sequences from 1176100 to 1182577 ....................... .......... 1180000 finished 1052680 clusters ---------- 2279 remaining sequences to the next cycle ---------- new table with 4027 representatives # comparing sequences from 1180298 to 1186631 ........................ ---------- 2247 remaining sequences to the next cycle ---------- new table with 3943 representatives # comparing sequences from 1184384 to 1190576 ..................... 100.0% ---------- 1957 remaining sequences to the next cycle ---------- new table with 4100 representatives # comparing sequences from 1188619 to 1194665 ...................... .......... 1190000 finished 1062311 clusters ... ---------- 1626 remaining sequences to the next cycle ---------- new table with 4274 representatives # comparing sequences from 1193039 to 1198932 ........................ 100.0% ---------- 1768 remaining sequences to the next cycle ---------- new table with 3928 representatives # comparing sequences from 1197164 to 1202915 ....................... .......... 1200000 finished 1071951 clusters ---------- 2457 remaining sequences to the next cycle ---------- new table with 3158 representatives # comparing sequences from 1200458 to 1206095 ....................... ---------- 2176 remaining sequences to the next cycle ---------- new table with 3376 representatives # comparing sequences from 1203919 to 1209437 ........................ ---------- 1780 remaining sequences to the next cycle ---------- new table with 3569 representatives # comparing sequences from 1207657 to 1213046 ....................... .......... 1210000 finished 1081587 clusters . ---------- 1896 remaining sequences to the next cycle ---------- new table with 3343 representatives # comparing sequences from 1211150 to 1216419 ....................... ---------- 2156 remaining sequences to the next cycle ---------- new table with 3055 representatives # comparing sequences from 1214263 to 1219424 ....................... ---------- 1839 remaining sequences to the next cycle ---------- new table with 3161 representatives # comparing sequences from 1217585 to 1222632 ...................... .......... 1220000 finished 1091242 clusters 100.0% ---------- 1831 remaining sequences to the next cycle ---------- new table with 3110 representatives # comparing sequences from 1220801 to 1225737 ....................... ---------- 1960 remaining sequences to the next cycle ---------- new table with 2873 representatives # comparing sequences from 1223777 to 1228610 ...................... ---------- 2340 remaining sequences to the next cycle ---------- new table with 2392 representatives # comparing sequences from 1226270 to 1231017 ...................... 100.0% ---------- 2193 remaining sequences to the next cycle ---------- new table with 2467 representatives # comparing sequences from 1228824 to 1233483 ..................... .......... 1230000 finished 1100889 clusters . ---------- 2021 remaining sequences to the next cycle ---------- new table with 2562 representatives # comparing sequences from 1231462 to 1236030 ....................... ---------- 2010 remaining sequences to the next cycle ---------- new table with 2452 representatives # comparing sequences from 1234020 to 1238500 ..................... 100.0% ---------- 2036 remaining sequences to the next cycle ---------- new table with 2391 representatives # comparing sequences from 1236464 to 1240860 ...................... ---------- 1965 remaining sequences to the next cycle ---------- new table with 2313 representatives # comparing sequences from 1238895 to 1243207 ..................... .......... 1240000 finished 1110529 clusters . ---------- 2013 remaining sequences to the next cycle ---------- new table with 2284 representatives # comparing sequences from 1241194 to 1245427 ..................... 100.0% ---------- 1925 remaining sequences to the next cycle ---------- new table with 2190 representatives # comparing sequences from 1243502 to 1247655 ..................... 100.0% ---------- 1862 remaining sequences to the next cycle ---------- new table with 2234 representatives # comparing sequences from 1245793 to 1249867 ...................... ---------- 1672 remaining sequences to the next cycle ---------- new table with 2299 representatives # comparing sequences from 1248195 to 1252186 ...................... .......... 1250000 finished 1120179 clusters 100.0% ---------- 1764 remaining sequences to the next cycle ---------- new table with 2155 representatives # comparing sequences from 1250422 to 1254337 ...................... ---------- 1770 remaining sequences to the next cycle ---------- new table with 2112 representatives # comparing sequences from 1252567 to 1256408 ...................... ---------- 2184 remaining sequences to the next cycle ---------- new table with 1558 representatives # comparing sequences from 1254224 to 1258007 ..................... ---------- 1802 remaining sequences to the next cycle ---------- new table with 1937 representatives # comparing sequences from 1256205 to 1259920 ..................... ---------- 1834 remaining sequences to the next cycle ---------- new table with 1853 representatives # comparing sequences from 1258086 to 1261736 .................... .......... 1260000 finished 1129854 clusters ---------- 1653 remaining sequences to the next cycle ---------- new table with 1874 representatives # comparing sequences from 1260083 to 1263664 .................... ---------- 1695 remaining sequences to the next cycle ---------- new table with 1822 representatives # comparing sequences from 1261969 to 1265485 ...................... ---------- 1710 remaining sequences to the next cycle ---------- new table with 1763 representatives # comparing sequences from 1263775 to 1267229 ...................... ---------- 1609 remaining sequences to the next cycle ---------- new table with 1734 representatives # comparing sequences from 1265620 to 1269011 ...................... 100.0% ---------- 1688 remaining sequences to the next cycle ---------- new table with 1672 representatives # comparing sequences from 1267323 to 1270655 ..................... ---------- 1869 remaining sequences to the next cycle ---------- new table with 1447 representatives # comparing sequences from 1268786 to 1272067 ..................... .......... 1270000 finished 1139519 clusters ---------- 1427 remaining sequences to the next cycle ---------- new table with 1760 representatives # comparing sequences from 1270640 to 1273857 ...................... ---------- 1558 remaining sequences to the next cycle ---------- new table with 1620 representatives # comparing sequences from 1272299 to 1275459 ..................... ---------- 1723 remaining sequences to the next cycle ---------- new table with 1425 representatives # comparing sequences from 1273736 to 1276847 ..................... ---------- 1678 remaining sequences to the next cycle ---------- new table with 1363 representatives # comparing sequences from 1275169 to 1278230 ................... ---------- 1555 remaining sequences to the next cycle ---------- new table with 1425 representatives # comparing sequences from 1276675 to 1279684 ...................... ---------- 1410 remaining sequences to the next cycle ---------- new table with 1564 representatives # comparing sequences from 1278274 to 1281228 .................... ---------- 1495 remaining sequences to the next cycle ---------- new table with 1454 representatives # comparing sequences from 1279733 to 1282637 .................... .......... 1280000 finished 1149234 clusters 100.0% ---------- 1860 remaining sequences to the next cycle ---------- new table with 975 representatives # comparing sequences from 1280777 to 1283645 ...................... ---------- 1606 remaining sequences to the next cycle ---------- new table with 1199 representatives # comparing sequences from 1282039 to 1284863 ..................... ---------- 1565 remaining sequences to the next cycle ---------- new table with 1223 representatives # comparing sequences from 1283298 to 1286079 ..................... ---------- 1459 remaining sequences to the next cycle ---------- new table with 1314 representatives # comparing sequences from 1284620 to 1287355 ................... ---------- 1897 remaining sequences to the next cycle ---------- new table with 812 representatives # comparing sequences from 1285458 to 1288164 .................... ---------- 1556 remaining sequences to the next cycle ---------- new table with 1069 representatives # comparing sequences from 1286608 to 1289275 ..................... ---------- 1382 remaining sequences to the next cycle ---------- new table with 1225 representatives # comparing sequences from 1287893 to 1290515 ..................... ---------- 1600 remaining sequences to the next cycle ---------- new table with 992 representatives # comparing sequences from 1288915 to 1291502 .................... ---------- 1547 remaining sequences to the next cycle ---------- new table with 1035 representatives # comparing sequences from 1289955 to 1292506 .................... .......... 1290000 finished 1158871 clusters ---------- 1623 remaining sequences to the next cycle ---------- new table with 914 representatives # comparing sequences from 1290883 to 1293402 ................. ---------- 1437 remaining sequences to the next cycle ---------- new table with 1009 representatives # comparing sequences from 1291965 to 1294447 ...................... ---------- 1325 remaining sequences to the next cycle ---------- new table with 1093 representatives # comparing sequences from 1293122 to 1295564 ..................... ---------- 1376 remaining sequences to the next cycle ---------- new table with 1029 representatives # comparing sequences from 1294188 to 1296593 ..................... ---------- 1342 remaining sequences to the next cycle ---------- new table with 1056 representatives # comparing sequences from 1295251 to 1297620 ..................... ---------- 1455 remaining sequences to the next cycle ---------- new table with 912 representatives # comparing sequences from 1296165 to 1298502 ................... ---------- 1401 remaining sequences to the next cycle ---------- new table with 893 representatives # comparing sequences from 1297101 to 1299406 .................... ---------- 1336 remaining sequences to the next cycle ---------- new table with 898 representatives # comparing sequences from 1298070 to 1300342 ..................... ---------- 1233 remaining sequences to the next cycle ---------- new table with 988 representatives # comparing sequences from 1299109 to 1301345 ..................... .......... 1300000 finished 1168484 clusters ---------- 1262 remaining sequences to the next cycle ---------- new table with 947 representatives # comparing sequences from 1300083 to 1302285 ..................... 100.0% ---------- 1284 remaining sequences to the next cycle ---------- new table with 907 representatives # comparing sequences from 1301001 to 1303171 .................... ---------- 1360 remaining sequences to the next cycle ---------- new table with 806 representatives # comparing sequences from 1301811 to 1303954 .................... 100.0% ---------- 1261 remaining sequences to the next cycle ---------- new table with 828 representatives # comparing sequences from 1302693 to 1304805 .................... ---------- 1243 remaining sequences to the next cycle ---------- new table with 822 representatives # comparing sequences from 1303562 to 1305644 ..................... 100.0% ---------- 1216 remaining sequences to the next cycle ---------- new table with 830 representatives # comparing sequences from 1304428 to 1306480 .................... ---------- 1211 remaining sequences to the next cycle ---------- new table with 811 representatives # comparing sequences from 1305269 to 1307292 ..................... ---------- 1216 remaining sequences to the next cycle ---------- new table with 796 representatives # comparing sequences from 1306076 to 1308071 .................... ---------- 1248 remaining sequences to the next cycle ---------- new table with 744 representatives # comparing sequences from 1306823 to 1308793 .................... ---------- 1244 remaining sequences to the next cycle ---------- new table with 710 representatives # comparing sequences from 1307549 to 1309494 ................. ---------- 1184 remaining sequences to the next cycle ---------- new table with 710 representatives # comparing sequences from 1308310 to 1310228 ..................... ---------- 1078 remaining sequences to the next cycle ---------- new table with 791 representatives # comparing sequences from 1309150 to 1311039 .................... ---------- 1111 remaining sequences to the next cycle ---------- new table with 741 representatives # comparing sequences from 1309928 to 1311791 .................... .......... 1310000 finished 1178132 clusters 100.0% ---------- 918 remaining sequences to the next cycle ---------- new table with 910 representatives # comparing sequences from 1310873 to 1312703 ..................... ---------- 922 remaining sequences to the next cycle ---------- new table with 894 representatives # comparing sequences from 1311781 to 1313580 .................... 100.0% ---------- 994 remaining sequences to the next cycle ---------- new table with 805 representatives # comparing sequences from 1312586 to 1314357 ................... ---------- 1007 remaining sequences to the next cycle ---------- new table with 735 representatives # comparing sequences from 1313350 to 1315095 .................... ---------- 970 remaining sequences to the next cycle ---------- new table with 720 representatives # comparing sequences from 1314125 to 1315843 ................... ---------- 1007 remaining sequences to the next cycle ---------- new table with 676 representatives # comparing sequences from 1314836 to 1316529 ..................... ---------- 994 remaining sequences to the next cycle ---------- new table with 665 representatives # comparing sequences from 1315535 to 1317204 ................... ---------- 1022 remaining sequences to the next cycle ---------- new table with 626 representatives # comparing sequences from 1316182 to 1317829 .................... ---------- 963 remaining sequences to the next cycle ---------- new table with 666 representatives # comparing sequences from 1316866 to 1318489 ..................... ---------- 1212 remaining sequences to the next cycle ---------- new table with 401 representatives # comparing sequences from 1317277 to 1318886 .................... ---------- 1174 remaining sequences to the next cycle ---------- new table with 434 representatives # comparing sequences from 1317712 to 1319306 ..................... 100.0% ---------- 1183 remaining sequences to the next cycle ---------- new table with 411 representatives # comparing sequences from 1318123 to 1319703 ................... ---------- 1152 remaining sequences to the next cycle ---------- new table with 427 representatives # comparing sequences from 1318551 to 1320116 ................... ---------- 1164 remaining sequences to the next cycle ---------- new table with 386 representatives # comparing sequences from 1318952 to 1320503 .................... ---------- 1106 remaining sequences to the next cycle ---------- new table with 423 representatives # comparing sequences from 1319397 to 1320933 ................. ---------- 1023 remaining sequences to the next cycle ---------- new table with 485 representatives # comparing sequences from 1319910 to 1321428 ..................... .......... 1320000 finished 1187810 clusters ---------- 978 remaining sequences to the next cycle ---------- new table with 507 representatives # comparing sequences from 1320450 to 1321950 ................... ---------- 1013 remaining sequences to the next cycle ---------- new table with 463 representatives # comparing sequences from 1320937 to 1322420 .................... ---------- 960 remaining sequences to the next cycle ---------- new table with 490 representatives # comparing sequences from 1321460 to 1322925 .................... ---------- 987 remaining sequences to the next cycle ---------- new table with 470 representatives # comparing sequences from 1321938 to 1323387 ..................... ---------- 944 remaining sequences to the next cycle ---------- new table with 492 representatives # comparing sequences from 1322443 to 1323874 .................... ---------- 939 remaining sequences to the next cycle ---------- new table with 485 representatives # comparing sequences from 1322935 to 1324349 ..................... ---------- 946 remaining sequences to the next cycle ---------- new table with 464 representatives # comparing sequences from 1323403 to 1324801 .................... ---------- 937 remaining sequences to the next cycle ---------- new table with 460 representatives # comparing sequences from 1323864 to 1325246 ................... ---------- 925 remaining sequences to the next cycle ---------- new table with 428 representatives # comparing sequences from 1324321 to 1325687 ................ ---------- 883 remaining sequences to the next cycle ---------- new table with 450 representatives # comparing sequences from 1324804 to 1326154 ................... ---------- 811 remaining sequences to the next cycle ---------- new table with 492 representatives # comparing sequences from 1325343 to 1326674 ................... 100.0% ---------- 773 remaining sequences to the next cycle ---------- new table with 528 representatives # comparing sequences from 1325901 to 1327213 .................... ---------- 785 remaining sequences to the next cycle ---------- new table with 503 representatives # comparing sequences from 1326428 to 1327722 .................... 100.0% ---------- 809 remaining sequences to the next cycle ---------- new table with 464 representatives # comparing sequences from 1326913 to 1328190 .................... ---------- 815 remaining sequences to the next cycle ---------- new table with 449 representatives # comparing sequences from 1327375 to 1328636 ................... ---------- 815 remaining sequences to the next cycle ---------- new table with 437 representatives # comparing sequences from 1327821 to 1329067 ..................... ---------- 826 remaining sequences to the next cycle ---------- new table with 411 representatives # comparing sequences from 1328241 to 1329472 .................... 100.0% ---------- 785 remaining sequences to the next cycle ---------- new table with 446 representatives # comparing sequences from 1328687 to 1329903 ..................... ---------- 822 remaining sequences to the next cycle ---------- new table with 394 representatives # comparing sequences from 1329081 to 1330283 ................... ---------- 814 remaining sequences to the next cycle ---------- new table with 388 representatives # comparing sequences from 1329469 to 1330658 .................. ---------- 786 remaining sequences to the next cycle ---------- new table with 391 representatives # comparing sequences from 1329872 to 1331047 .................... .......... 1330000 finished 1197458 clusters ---------- 748 remaining sequences to the next cycle ---------- new table with 397 representatives # comparing sequences from 1330299 to 1331459 ................... 100.0% ---------- 729 remaining sequences to the next cycle ---------- new table with 405 representatives # comparing sequences from 1330730 to 1331875 ................... ---------- 675 remaining sequences to the next cycle ---------- new table with 443 representatives # comparing sequences from 1331200 to 1332329 .................... ---------- 706 remaining sequences to the next cycle ---------- new table with 402 representatives # comparing sequences from 1331623 to 1332738 .................... 100.0% ---------- 671 remaining sequences to the next cycle ---------- new table with 424 representatives # comparing sequences from 1332067 to 1333166 ................. ---------- 687 remaining sequences to the next cycle ---------- new table with 395 representatives # comparing sequences from 1332479 to 1333564 ................. ---------- 723 remaining sequences to the next cycle ---------- new table with 353 representatives # comparing sequences from 1332841 to 1333914 .................... 100.0% ---------- 727 remaining sequences to the next cycle ---------- new table with 335 representatives # comparing sequences from 1333187 to 1334248 .................... ---------- 692 remaining sequences to the next cycle ---------- new table with 363 representatives # comparing sequences from 1333556 to 1334604 .................... ---------- 680 remaining sequences to the next cycle ---------- new table with 359 representatives # comparing sequences from 1333924 to 1334959 ..................... ---------- 707 remaining sequences to the next cycle ---------- new table with 324 representatives # comparing sequences from 1334252 to 1335276 .................... ---------- 689 remaining sequences to the next cycle ---------- new table with 333 representatives # comparing sequences from 1334587 to 1335599 .................... ---------- 707 remaining sequences to the next cycle ---------- new table with 305 representatives # comparing sequences from 1334892 to 1335894 ................... ---------- 678 remaining sequences to the next cycle ---------- new table with 324 representatives # comparing sequences from 1335216 to 1336207 ................. ---------- 644 remaining sequences to the next cycle ---------- new table with 336 representatives # comparing sequences from 1335563 to 1336542 .................. 100.0% ---------- 637 remaining sequences to the next cycle ---------- new table with 324 representatives # comparing sequences from 1335905 to 1336872 .................. ---------- 593 remaining sequences to the next cycle ---------- new table with 347 representatives # comparing sequences from 1336279 to 1337233 .................. ---------- 593 remaining sequences to the next cycle ---------- new table with 347 representatives # comparing sequences from 1336640 to 1337582 ................... ---------- 579 remaining sequences to the next cycle ---------- new table with 349 representatives # comparing sequences from 1337003 to 1337932 ................... ---------- 588 remaining sequences to the next cycle ---------- new table with 321 representatives # comparing sequences from 1337344 to 1338261 .................... ---------- 565 remaining sequences to the next cycle ---------- new table with 340 representatives # comparing sequences from 1337696 to 1338601 ..................... ---------- 571 remaining sequences to the next cycle ---------- new table with 318 representatives # comparing sequences from 1338030 to 1338924 .................. ---------- 550 remaining sequences to the next cycle ---------- new table with 330 representatives # comparing sequences from 1338374 to 1339256 .................... 100.0% ---------- 574 remaining sequences to the next cycle ---------- new table with 302 representatives # comparing sequences from 1338682 to 1339553 ................... ---------- 572 remaining sequences to the next cycle ---------- new table with 289 representatives # comparing sequences from 1338981 to 1339842 ................... ---------- 549 remaining sequences to the next cycle ---------- new table with 307 representatives # comparing sequences from 1339293 to 1340143 .................... ---------- 537 remaining sequences to the next cycle ---------- new table with 311 representatives # comparing sequences from 1339606 to 1340445 .................... ---------- 563 remaining sequences to the next cycle ---------- new table with 276 representatives # comparing sequences from 1339882 to 1340712 ..................... .......... 1340000 finished 1207113 clusters ---------- 567 remaining sequences to the next cycle ---------- new table with 259 representatives # comparing sequences from 1340145 to 1340966 ................... ---------- 560 remaining sequences to the next cycle ---------- new table with 261 representatives # comparing sequences from 1340406 to 1341218 .................... ---------- 561 remaining sequences to the next cycle ---------- new table with 251 representatives # comparing sequences from 1340657 to 1341460 .................... ---------- 551 remaining sequences to the next cycle ---------- new table with 252 representatives # comparing sequences from 1340909 to 1341703 .................... ---------- 514 remaining sequences to the next cycle ---------- new table with 271 representatives # comparing sequences from 1341189 to 1341974 ................... ---------- 490 remaining sequences to the next cycle ---------- new table with 277 representatives # comparing sequences from 1341484 to 1342259 ................ ---------- 459 remaining sequences to the next cycle ---------- new table with 293 representatives # comparing sequences from 1341800 to 1342564 ................... 100.0% ---------- 475 remaining sequences to the next cycle ---------- new table with 267 representatives # comparing sequences from 1342089 to 1342843 .................. ---------- 486 remaining sequences to the next cycle ---------- new table with 257 representatives # comparing sequences from 1342357 to 1343101 .................. ---------- 455 remaining sequences to the next cycle ---------- new table with 270 representatives # comparing sequences from 1342646 to 1343380 .................... ---------- 470 remaining sequences to the next cycle ---------- new table with 253 representatives # comparing sequences from 1342910 to 1343635 .................... ---------- 455 remaining sequences to the next cycle ---------- new table with 258 representatives # comparing sequences from 1343180 to 1343896 .................. ---------- 464 remaining sequences to the next cycle ---------- new table with 243 representatives # comparing sequences from 1343432 to 1344139 ................... ---------- 442 remaining sequences to the next cycle ---------- new table with 256 representatives # comparing sequences from 1343697 to 1344395 ................... ---------- 452 remaining sequences to the next cycle ---------- new table with 234 representatives # comparing sequences from 1343943 to 1344633 ..................... ---------- 443 remaining sequences to the next cycle ---------- new table with 242 representatives # comparing sequences from 1344190 to 1344871 ................... ---------- 450 remaining sequences to the next cycle ---------- new table with 226 representatives # comparing sequences from 1344421 to 1345094 .................... ---------- 439 remaining sequences to the next cycle ---------- new table with 225 representatives # comparing sequences from 1344655 to 1345320 .................... ---------- 417 remaining sequences to the next cycle ---------- new table with 242 representatives # comparing sequences from 1344903 to 1345560 ..................... ---------- 433 remaining sequences to the next cycle ---------- new table with 222 representatives # comparing sequences from 1345127 to 1345776 .................... ---------- 439 remaining sequences to the next cycle ---------- new table with 208 representatives # comparing sequences from 1345337 to 1345979 .................... ---------- 437 remaining sequences to the next cycle ---------- new table with 204 representatives # comparing sequences from 1345542 to 1346177 .................... ---------- 442 remaining sequences to the next cycle ---------- new table with 192 representatives # comparing sequences from 1345735 to 1346363 .................... ---------- 341 remaining sequences to the next cycle ---------- new table with 287 representatives # comparing sequences from 1346022 to 1346640 ................... ---------- 354 remaining sequences to the next cycle ---------- new table with 263 representatives # comparing sequences from 1346286 to 1346895 .................... ---------- 390 remaining sequences to the next cycle ---------- new table with 219 representatives # comparing sequences from 1346505 to 1347106 .................... 100.0% ---------- 355 remaining sequences to the next cycle ---------- new table with 241 representatives # comparing sequences from 1346751 to 1347344 ................... ---------- 379 remaining sequences to the next cycle ---------- new table with 208 representatives # comparing sequences from 1346965 to 1347551 ................... ---------- 347 remaining sequences to the next cycle ---------- new table with 223 representatives # comparing sequences from 1347204 to 1347781 .................... ---------- 354 remaining sequences to the next cycle ---------- new table with 208 representatives # comparing sequences from 1347427 to 1347997 .................... ---------- 342 remaining sequences to the next cycle ---------- new table with 214 representatives # comparing sequences from 1347655 to 1348217 .................... ---------- 311 remaining sequences to the next cycle ---------- new table with 228 representatives # comparing sequences from 1347906 to 1348459 .................... ---------- 332 remaining sequences to the next cycle ---------- new table with 208 representatives # comparing sequences from 1348127 to 1348672 .................. 100.0% ---------- 325 remaining sequences to the next cycle ---------- new table with 212 representatives # comparing sequences from 1348347 to 1348885 .................... ---------- 325 remaining sequences to the next cycle ---------- new table with 200 representatives # comparing sequences from 1348560 to 1349091 ................... ---------- 316 remaining sequences to the next cycle ---------- new table with 207 representatives # comparing sequences from 1348775 to 1349298 ................. ---------- 327 remaining sequences to the next cycle ---------- new table with 187 representatives # comparing sequences from 1348971 to 1349487 .................... ---------- 317 remaining sequences to the next cycle ---------- new table with 190 representatives # comparing sequences from 1349170 to 1349679 ................... 100.0% ---------- 322 remaining sequences to the next cycle ---------- new table with 176 representatives # comparing sequences from 1349357 to 1349860 ................... ---------- 303 remaining sequences to the next cycle ---------- new table with 187 representatives # comparing sequences from 1349557 to 1350053 .................... ---------- 324 remaining sequences to the next cycle ---------- new table with 167 representatives # comparing sequences from 1349729 to 1350219 .................. ---------- 317 remaining sequences to the next cycle ---------- new table with 173 representatives # comparing sequences from 1349902 to 1350386 ................... .......... 1350000 finished 1216752 clusters ---------- 315 remaining sequences to the next cycle ---------- new table with 162 representatives # comparing sequences from 1350071 to 1350549 .................... ---------- 311 remaining sequences to the next cycle ---------- new table with 163 representatives # comparing sequences from 1350238 to 1350711 .................... ---------- 370 remaining sequences to the next cycle ---------- new table with 102 representatives # comparing sequences from 1350341 to 1350810 ................... ---------- 366 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1350444 to 1350910 ................... ---------- 364 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1350546 to 1351008 ................... ---------- 361 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1350647 to 1351106 .................... ---------- 356 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1350750 to 1351205 .................... ---------- 351 remaining sequences to the next cycle ---------- new table with 103 representatives # comparing sequences from 1350854 to 1351305 .................... ---------- 351 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1350954 to 1351402 .................... ---------- 348 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1351054 to 1351499 ................... ---------- 343 remaining sequences to the next cycle ---------- new table with 102 representatives # comparing sequences from 1351156 to 1351597 .................... ---------- 337 remaining sequences to the next cycle ---------- new table with 104 representatives # comparing sequences from 1351260 to 1351697 .................... ---------- 337 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1351360 to 1351794 .................... ---------- 334 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1351460 to 1351891 .................... ---------- 331 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1351560 to 1351987 ................... ---------- 327 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1351660 to 1352084 ................... ---------- 324 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1351760 to 1352180 ................... ---------- 320 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1351860 to 1352277 .................... ---------- 317 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1351960 to 1352373 .................... ---------- 313 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1352060 to 1352470 .................... ---------- 310 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1352160 to 1352566 ................... ---------- 306 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1352260 to 1352663 ................... ---------- 303 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1352360 to 1352759 .................. ---------- 289 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1352470 to 1352866 ................. ---------- 292 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1352574 to 1352966 .................. ---------- 288 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1352678 to 1353067 .................. ---------- 283 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1352784 to 1353169 ................. ---------- 276 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1352893 to 1353274 ................. ---------- 276 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1352998 to 1353375 ................... ---------- 268 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1353107 to 1353481 ................. ---------- 265 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1353216 to 1353586 ................... ---------- 263 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1353323 to 1353689 ................... ---------- 259 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1353430 to 1353793 ................... ---------- 253 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1353540 to 1353899 .................... ---------- 248 remaining sequences to the next cycle ---------- new table with 104 representatives # comparing sequences from 1353651 to 1354006 ................... ---------- 247 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1353759 to 1354110 ................... ---------- 239 remaining sequences to the next cycle ---------- new table with 107 representatives # comparing sequences from 1353871 to 1354218 .................. ---------- 240 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1353978 to 1354322 ..................... ---------- 238 remaining sequences to the next cycle ---------- new table with 103 representatives # comparing sequences from 1354084 to 1354424 ................... ---------- 236 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1354188 to 1354524 ................. ---------- 224 remaining sequences to the next cycle ---------- new table with 103 representatives # comparing sequences from 1354300 to 1354633 .................. ---------- 227 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1354406 to 1354735 .................. ---------- 220 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1354515 to 1354840 ................. ---------- 218 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1354622 to 1354943 .................. ---------- 212 remaining sequences to the next cycle ---------- new table with 105 representatives # comparing sequences from 1354731 to 1355049 .................. ---------- 214 remaining sequences to the next cycle ---------- new table with 101 representatives # comparing sequences from 1354835 to 1355149 .................. ---------- 211 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1354938 to 1355249 .................... ---------- 201 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1355048 to 1355355 ................... ---------- 203 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1355152 to 1355455 ................... ---------- 196 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1355259 to 1355559 ................... ---------- 198 remaining sequences to the next cycle ---------- new table with 101 representatives # comparing sequences from 1355361 to 1355657 ................... ---------- 195 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1355462 to 1355755 .................. ---------- 190 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1355565 to 1355854 .................... ---------- 186 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1355668 to 1355953 .................. ---------- 182 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1355771 to 1356053 .................. ---------- 180 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1355873 to 1356151 ................... ---------- 176 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1355975 to 1356250 .................... ---------- 173 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1356077 to 1356348 ................... ---------- 169 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1356179 to 1356447 .................... ---------- 166 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1356281 to 1356545 ................... ---------- 164 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1356381 to 1356642 .................. ---------- 159 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1356483 to 1356740 .................... ---------- 157 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1356583 to 1356837 .................... ---------- 154 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1356683 to 1356933 ................... ---------- 149 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1356784 to 1357031 ................... ---------- 147 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1356884 to 1357127 .................. ---------- 143 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1356984 to 1357224 .................. ---------- 139 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1357085 to 1357322 .................... ---------- 137 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1357185 to 1357418 .................... ---------- 132 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1357286 to 1357516 ................... ---------- 130 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1357386 to 1357612 ................... ---------- 125 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1357487 to 1357710 ................... ---------- 123 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1357587 to 1357806 .................... ---------- 119 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1357687 to 1357903 ................... ---------- 116 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1357787 to 1357999 ................... ---------- 112 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1357887 to 1358096 .................. ---------- 108 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1357988 to 1358193 .................. ---------- 98 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1358095 to 1358297 ................. ---------- 97 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1358200 to 1358398 ................... ---------- 94 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1358304 to 1358499 .................. ---------- 87 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1358412 to 1358603 .................. ---------- 82 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1358521 to 1358708 .................. ---------- 82 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1358626 to 1358809 .................. ---------- 73 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1358736 to 1358916 ................. ---------- 74 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1358842 to 1359018 ................ ---------- 70 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1358948 to 1359120 ................. ---------- 62 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1359058 to 1359227 ................... ---------- 61 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1359166 to 1359331 .................. ---------- 62 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1359269 to 1359430 ................. ---------- 55 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1359375 to 1359533 ................... ---------- 52 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1359481 to 1359635 ................... ---------- 47 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1359588 to 1359738 ................ ---------- 45 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1359693 to 1359840 ................. ---------- 40 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1359800 to 1359943 ................. ---------- 36 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1359907 to 1360046 ................... ---------- 35 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1360011 to 1360147 .................. ---------- 32 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1360115 to 1360247 .................. ---------- 31 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1360216 to 1360345 ................. ---------- 27 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1360318 to 1360443 ................ ---------- 19 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1360424 to 1360545 ................. ---------- 13 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1360532 to 1360650 .................. ---------- 15 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1360635 to 1360749 .................. ---------- 10 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1360739 to 1360850 ................... ---------- 9 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1360841 to 1360948 .................. ---------- 6 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1360942 to 1361046 ................. ---------- 3 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 1361043 to 1361143 ................---------- new table with 97 representatives # comparing sequences from 1361143 to 1361240 ...................---------- new table with 96 representatives # comparing sequences from 1361240 to 1361333 ...................---------- new table with 92 representatives # comparing sequences from 1361333 to 1361423 ..................---------- new table with 86 representatives # comparing sequences from 1361423 to 1361510 ...............---------- new table with 84 representatives # comparing sequences from 1361510 to 1361594 ................---------- new table with 81 representatives # comparing sequences from 1361594 to 1361675 ................---------- new table with 80 representatives # comparing sequences from 1361675 to 1361753 ....................---------- new table with 78 representatives # comparing sequences from 1361753 to 1361829 ...................---------- new table with 75 representatives # comparing sequences from 1361829 to 1361902 ..................---------- new table with 71 representatives # comparing sequences from 1361902 to 1361972 .................---------- new table with 70 representatives # comparing sequences from 1361972 to 1362040 ..................---------- new table with 66 representatives # comparing sequences from 1362040 to 1362106 .................---------- new table with 66 representatives # comparing sequences from 1362106 to 1362169 ................---------- new table with 63 representatives # comparing sequences from 1362169 to 1362230 ...............---------- new table with 60 representatives # comparing sequences from 1362230 to 1362289 ....................---------- new table with 57 representatives # comparing sequences from 1362289 to 1362346 ...................---------- new table with 57 representatives # comparing sequences from 1362346 to 1362401 ..................---------- new table with 54 representatives # comparing sequences from 1362401 to 1362454 ..................---------- new table with 53 representatives # comparing sequences from 1362454 to 1362505 .................---------- new table with 51 representatives # comparing sequences from 1362505 to 1362555 ................---------- new table with 49 representatives # comparing sequences from 1362555 to 1362603 ................---------- new table with 47 representatives # comparing sequences from 1362603 to 1362649 ................---------- new table with 46 representatives # comparing sequences from 1362649 to 1362694 ...............---------- new table with 45 representatives # comparing sequences from 1362694 to 1362737 ..............---------- new table with 43 representatives # comparing sequences from 1362737 to 1362779 ..............---------- new table with 42 representatives # comparing sequences from 1362779 to 1362819 .............---------- new table with 40 representatives # comparing sequences from 1362819 to 1362858 ...................---------- new table with 39 representatives # comparing sequences from 1362858 to 1362895 ...................---------- new table with 37 representatives # comparing sequences from 1362895 to 1362931 ..................---------- new table with 36 representatives # comparing sequences from 1362931 to 1362966 .................---------- new table with 35 representatives # comparing sequences from 1362966 to 1363959 ..................---------- new table with 932 representatives 1363959 finished 1230245 clusters Approximated maximum memory consumption: 2375M writing new database writing clustering information program completed ! Total CPU time 16755.76 ================================================================ Program: CD-HIT, V4.8.1 (+OpenMP), Jul 24 2019, 13:13:52 Command: /gscratch/srlab/programs/cd-hit-v4.8.1-2019-0228/cd-hit-est -o ctenidia.cdhit -c 0.98 -i /gscratch/srlab/sam/data/P_generosa/transcriptomes/ctenidia/Trinity.fasta -p 1 -d 0 -b 3 -T 27 -M 0 Started: Mon Jul 29 12:09:03 2019 ================================================================ Output ---------------------------------------------------------------- total seq: 349773 longest and shortest : 32699 and 180 Total letters: 274785010 Sequences have been sorted Approximated minimal memory consumption: Sequence : 323M Buffer : 27 X 18M = 506M Table : 2 X 22M = 44M Miscellaneous : 8M Total : 883M Table limit with the given memory limit: Max number of representatives: 458974 Max number of word counting entries: 87187839 # comparing sequences from 0 to 1049 .---------- new table with 709 representatives # comparing sequences from 1049 to 13073 .................... ---------- 11108 remaining sequences to the next cycle ---------- new table with 655 representatives # comparing sequences from 1965 to 13958 ..................... ---------- 11067 remaining sequences to the next cycle ---------- new table with 681 representatives # comparing sequences from 2891 to 14852 .................... ---------- 10863 remaining sequences to the next cycle ---------- new table with 771 representatives # comparing sequences from 3989 to 15912 ..................... ---------- 10814 remaining sequences to the next cycle ---------- new table with 786 representatives # comparing sequences from 5098 to 16983 .................. ---------- 10691 remaining sequences to the next cycle ---------- new table with 876 representatives # comparing sequences from 6292 to 18136 .................... ---------- 10410 remaining sequences to the next cycle ---------- new table with 1045 representatives # comparing sequences from 7726 to 19520 ................... ---------- 10145 remaining sequences to the next cycle ---------- new table with 1224 representatives # comparing sequences from 9375 to 21112 .................. .......... 10000 finished 7223 clusters ---------- 10039 remaining sequences to the next cycle ---------- new table with 1275 representatives # comparing sequences from 11073 to 22752 .................... ---------- 9862 remaining sequences to the next cycle ---------- new table with 1380 representatives # comparing sequences from 12890 to 24506 ...................... ---------- 9840 remaining sequences to the next cycle ---------- new table with 1354 representatives # comparing sequences from 14666 to 26221 .................... ---------- 9756 remaining sequences to the next cycle ---------- new table with 1406 representatives # comparing sequences from 16465 to 27958 ...................... ---------- 9353 remaining sequences to the next cycle ---------- new table with 1697 representatives # comparing sequences from 18605 to 30024 ................... .......... 20000 finished 15007 clusters ---------- 9381 remaining sequences to the next cycle ---------- new table with 1654 representatives # comparing sequences from 20643 to 31992 ................... ---------- 9119 remaining sequences to the next cycle ---------- new table with 1816 representatives # comparing sequences from 22873 to 34145 ...................... ---------- 8513 remaining sequences to the next cycle ---------- new table with 2250 representatives # comparing sequences from 25632 to 36809 ..................... ---------- 8418 remaining sequences to the next cycle ---------- new table with 2275 representatives # comparing sequences from 28391 to 39473 .................... .......... 30000 finished 23200 clusters . ---------- 7973 remaining sequences to the next cycle ---------- new table with 2598 representatives # comparing sequences from 31500 to 42474 ..................... ---------- 8277 remaining sequences to the next cycle ---------- new table with 2298 representatives # comparing sequences from 34197 to 45078 .................... ---------- 7937 remaining sequences to the next cycle ---------- new table with 2478 representatives # comparing sequences from 37141 to 47921 ...................... ---------- 8120 remaining sequences to the next cycle ---------- new table with 2298 representatives # comparing sequences from 39801 to 50489 ..................... .......... 40000 finished 31698 clusters ... ---------- 7420 remaining sequences to the next cycle ---------- new table with 2833 representatives # comparing sequences from 43069 to 53645 ....................... ---------- 7610 remaining sequences to the next cycle ---------- new table with 2571 representatives # comparing sequences from 46035 to 56508 ...................... ---------- 7648 remaining sequences to the next cycle ---------- new table with 2463 representatives # comparing sequences from 48860 to 59236 .................... .......... 50000 finished 40393 clusters . ---------- 7550 remaining sequences to the next cycle ---------- new table with 2479 representatives # comparing sequences from 51686 to 61964 ..................... ---------- 7079 remaining sequences to the next cycle ---------- new table with 2833 representatives # comparing sequences from 54885 to 65053 ....................... ---------- 7040 remaining sequences to the next cycle ---------- new table with 2795 representatives # comparing sequences from 58013 to 68073 .................... .......... 60000 finished 49263 clusters . ---------- 6227 remaining sequences to the next cycle ---------- new table with 3429 representatives # comparing sequences from 61846 to 71774 ...................... ---------- 6549 remaining sequences to the next cycle ---------- new table with 3028 representatives # comparing sequences from 65225 to 75037 ...................... 100.0% ---------- 5836 remaining sequences to the next cycle ---------- new table with 3610 representatives # comparing sequences from 69201 to 78875 .................... .......... 70000 finished 58296 clusters .. ---------- 5959 remaining sequences to the next cycle ---------- new table with 3367 representatives # comparing sequences from 72916 to 82462 ....................... ---------- 5530 remaining sequences to the next cycle ---------- new table with 3663 representatives # comparing sequences from 76932 to 86340 ....................... .......... 80000 finished 67391 clusters ---------- 5743 remaining sequences to the next cycle ---------- new table with 3339 representatives # comparing sequences from 80597 to 89878 ........................ ---------- 4911 remaining sequences to the next cycle ---------- new table with 3995 representatives # comparing sequences from 84967 to 94098 ....................... ---------- 5264 remaining sequences to the next cycle ---------- new table with 3571 representatives # comparing sequences from 88834 to 97831 ....................... ---------- 5050 remaining sequences to the next cycle ---------- new table with 3642 representatives # comparing sequences from 92781 to 101642 ....................... ---------- 5110 remaining sequences to the next cycle ---------- new table with 3492 representatives # comparing sequences from 96532 to 105264 ........................ .......... 100000 finished 85851 clusters ---------- 4624 remaining sequences to the next cycle ---------- new table with 3814 representatives # comparing sequences from 100640 to 109230 ........................ ---------- 4582 remaining sequences to the next cycle ---------- new table with 3710 representatives # comparing sequences from 104648 to 113100 ......................... ---------- 3768 remaining sequences to the next cycle ---------- new table with 4374 representatives # comparing sequences from 109332 to 117623 .................... .......... 110000 finished 95166 clusters ... ---------- 3992 remaining sequences to the next cycle ---------- new table with 4025 representatives # comparing sequences from 113631 to 121773 ........................ 100.0% ---------- 4199 remaining sequences to the next cycle ---------- new table with 3687 representatives # comparing sequences from 117574 to 125580 ...................... .......... 120000 finished 104523 clusters . ---------- 4197 remaining sequences to the next cycle ---------- new table with 3572 representatives # comparing sequences from 121383 to 129258 ...................... ---------- 4077 remaining sequences to the next cycle ---------- new table with 3593 representatives # comparing sequences from 125181 to 132925 ........................ ---------- 3800 remaining sequences to the next cycle ---------- new table with 3737 representatives # comparing sequences from 129125 to 136733 ..................... .......... 130000 finished 113983 clusters ... ---------- 2760 remaining sequences to the next cycle ---------- new table with 4572 representatives # comparing sequences from 133973 to 141414 ......................... 100.0% ---------- 3305 remaining sequences to the next cycle ---------- new table with 3916 representatives # comparing sequences from 138109 to 145407 ...................... .......... 140000 finished 123429 clusters . ---------- 3686 remaining sequences to the next cycle ---------- new table with 3416 representatives # comparing sequences from 141721 to 148895 ....................... ---------- 3333 remaining sequences to the next cycle ---------- new table with 3630 representatives # comparing sequences from 145562 to 152603 ........................ ---------- 3410 remaining sequences to the next cycle ---------- new table with 3432 representatives # comparing sequences from 149193 to 156109 .................... .......... 150000 finished 132886 clusters .. ---------- 3209 remaining sequences to the next cycle ---------- new table with 3522 representatives # comparing sequences from 152900 to 159688 ..................... ---------- 3130 remaining sequences to the next cycle ---------- new table with 3444 representatives # comparing sequences from 156558 to 163220 ........................ .......... 160000 finished 142347 clusters ---------- 2850 remaining sequences to the next cycle ---------- new table with 3617 representatives # comparing sequences from 160370 to 166901 ....................... ---------- 2804 remaining sequences to the next cycle ---------- new table with 3514 representatives # comparing sequences from 164097 to 170499 ..................... 100.0% ---------- 2813 remaining sequences to the next cycle ---------- new table with 3386 representatives # comparing sequences from 167686 to 173964 ....................... .......... 170000 finished 151803 clusters . ---------- 2637 remaining sequences to the next cycle ---------- new table with 3454 representatives # comparing sequences from 171327 to 177480 ........................ ---------- 2452 remaining sequences to the next cycle ---------- new table with 3525 representatives # comparing sequences from 175028 to 181053 ....................... ---------- 2442 remaining sequences to the next cycle ---------- new table with 3418 representatives # comparing sequences from 178611 to 184513 ..................... .......... 180000 finished 161318 clusters .. ---------- 2400 remaining sequences to the next cycle ---------- new table with 3329 representatives # comparing sequences from 182113 to 187894 ........................ ---------- 1627 remaining sequences to the next cycle ---------- new table with 3985 representatives # comparing sequences from 186267 to 191905 ........................ .......... 190000 finished 170862 clusters 100.0% ---------- 1900 remaining sequences to the next cycle ---------- new table with 3558 representatives # comparing sequences from 190005 to 195514 ...................... ---------- 1418 remaining sequences to the next cycle ---------- new table with 3892 representatives # comparing sequences from 194096 to 199464 ....................... ---------- 1746 remaining sequences to the next cycle ---------- new table with 3450 representatives # comparing sequences from 197718 to 202961 ....................... .......... 200000 finished 180374 clusters . 100.0% ---------- 1335 remaining sequences to the next cycle ---------- new table with 3716 representatives # comparing sequences from 201626 to 206734 ....................... ---------- 1632 remaining sequences to the next cycle ---------- new table with 3340 representatives # comparing sequences from 205102 to 210090 ...................... 100.0% ---------- 1165 remaining sequences to the next cycle ---------- new table with 3679 representatives # comparing sequences from 208925 to 213781 ...................... .......... 210000 finished 189978 clusters .. ---------- 1507 remaining sequences to the next cycle ---------- new table with 3218 representatives # comparing sequences from 212274 to 217015 ....................... ---------- 1120 remaining sequences to the next cycle ---------- new table with 3470 representatives # comparing sequences from 215895 to 220511 ....................... ---------- 1546 remaining sequences to the next cycle ---------- new table with 2941 representatives # comparing sequences from 218965 to 223475 ...................... .......... 220000 finished 199566 clusters .. ---------- 1191 remaining sequences to the next cycle ---------- new table with 3176 representatives # comparing sequences from 222284 to 226680 ....................... 100.0% ---------- 1466 remaining sequences to the next cycle ---------- new table with 2826 representatives # comparing sequences from 225214 to 229509 ..................... ---------- 1733 remaining sequences to the next cycle ---------- new table with 2464 representatives # comparing sequences from 227776 to 231982 ....................... .......... 230000 finished 209162 clusters ---------- 1599 remaining sequences to the next cycle ---------- new table with 2500 representatives # comparing sequences from 230383 to 234499 ...................... ---------- 1127 remaining sequences to the next cycle ---------- new table with 2861 representatives # comparing sequences from 233372 to 237385 ....................... ---------- 1355 remaining sequences to the next cycle ---------- new table with 2546 representatives # comparing sequences from 236030 to 239952 ...................... ---------- 1553 remaining sequences to the next cycle ---------- new table with 2293 representatives # comparing sequences from 238399 to 242239 ...................... .......... 240000 finished 218782 clusters ---------- 1488 remaining sequences to the next cycle ---------- new table with 2264 representatives # comparing sequences from 240751 to 244510 ...................... 100.0% ---------- 1060 remaining sequences to the next cycle ---------- new table with 2597 representatives # comparing sequences from 243450 to 247116 ..................... ---------- 1175 remaining sequences to the next cycle ---------- new table with 2388 representatives # comparing sequences from 245941 to 249521 ....................... ---------- 868 remaining sequences to the next cycle ---------- new table with 2627 representatives # comparing sequences from 248653 to 252139 .................... .......... 250000 finished 228416 clusters ---------- 1519 remaining sequences to the next cycle ---------- new table with 1905 representatives # comparing sequences from 250620 to 254039 ...................... 100.0% ---------- 1029 remaining sequences to the next cycle ---------- new table with 2304 representatives # comparing sequences from 253010 to 256346 ..................... ---------- 1198 remaining sequences to the next cycle ---------- new table with 2057 representatives # comparing sequences from 255148 to 258410 ...................... 100.0% ---------- 1189 remaining sequences to the next cycle ---------- new table with 2010 representatives # comparing sequences from 257221 to 260412 ...................... ---------- 1349 remaining sequences to the next cycle ---------- new table with 1788 representatives # comparing sequences from 259063 to 262190 .................... .......... 260000 finished 238095 clusters ---------- 1346 remaining sequences to the next cycle ---------- new table with 1732 representatives # comparing sequences from 260844 to 263910 ..................... ---------- 1216 remaining sequences to the next cycle ---------- new table with 1785 representatives # comparing sequences from 262694 to 265696 ...................... 100.0% ---------- 1291 remaining sequences to the next cycle ---------- new table with 1663 representatives # comparing sequences from 264405 to 267348 ..................... ---------- 1272 remaining sequences to the next cycle ---------- new table with 1613 representatives # comparing sequences from 266076 to 268962 .................... 100.0% ---------- 942 remaining sequences to the next cycle ---------- new table with 1894 representatives # comparing sequences from 268020 to 270839 ................... ---------- 1058 remaining sequences to the next cycle ---------- new table with 1716 representatives # comparing sequences from 269781 to 272539 ..................... .......... 270000 finished 247796 clusters . ---------- 831 remaining sequences to the next cycle ---------- new table with 1860 representatives # comparing sequences from 271708 to 274399 ..................... ---------- 1151 remaining sequences to the next cycle ---------- new table with 1513 representatives # comparing sequences from 273248 to 275886 ..................... ---------- 1217 remaining sequences to the next cycle ---------- new table with 1382 representatives # comparing sequences from 274669 to 277258 ..................... 100.0% ---------- 1076 remaining sequences to the next cycle ---------- new table with 1461 representatives # comparing sequences from 276182 to 278719 ..................... ---------- 830 remaining sequences to the next cycle ---------- new table with 1674 representatives # comparing sequences from 277889 to 280367 ...................... 100.0% ---------- 910 remaining sequences to the next cycle ---------- new table with 1521 representatives # comparing sequences from 279457 to 281881 ..................... .......... 280000 finished 257523 clusters . 100.0% ---------- 766 remaining sequences to the next cycle ---------- new table with 1613 representatives # comparing sequences from 281115 to 283482 ................... 100.0% ---------- 871 remaining sequences to the next cycle ---------- new table with 1465 representatives # comparing sequences from 282611 to 284926 ..................... ---------- 1061 remaining sequences to the next cycle ---------- new table with 1228 representatives # comparing sequences from 283865 to 286137 ..................... ---------- 966 remaining sequences to the next cycle ---------- new table with 1254 representatives # comparing sequences from 285171 to 287398 .................... ---------- 913 remaining sequences to the next cycle ---------- new table with 1272 representatives # comparing sequences from 286485 to 288667 ..................... ---------- 1045 remaining sequences to the next cycle ---------- new table with 1111 representatives # comparing sequences from 287622 to 289765 ..................... ---------- 1062 remaining sequences to the next cycle ---------- new table with 1056 representatives # comparing sequences from 288703 to 290808 ..................... ---------- 1056 remaining sequences to the next cycle ---------- new table with 1028 representatives # comparing sequences from 289752 to 291821 .................... .......... 290000 finished 267259 clusters ---------- 1054 remaining sequences to the next cycle ---------- new table with 985 representatives # comparing sequences from 290767 to 292801 ..................... ---------- 925 remaining sequences to the next cycle ---------- new table with 1082 representatives # comparing sequences from 291876 to 293872 ..................... ---------- 977 remaining sequences to the next cycle ---------- new table with 985 representatives # comparing sequences from 292895 to 294856 .................... ---------- 872 remaining sequences to the next cycle ---------- new table with 1060 representatives # comparing sequences from 293984 to 295907 ..................... 100.0% ---------- 963 remaining sequences to the next cycle ---------- new table with 946 representatives # comparing sequences from 294944 to 296834 ..................... ---------- 956 remaining sequences to the next cycle ---------- new table with 915 representatives # comparing sequences from 295878 to 297736 ..................... ---------- 944 remaining sequences to the next cycle ---------- new table with 895 representatives # comparing sequences from 296792 to 298618 ..................... ---------- 869 remaining sequences to the next cycle ---------- new table with 928 representatives # comparing sequences from 297749 to 299542 ..................... ---------- 920 remaining sequences to the next cycle ---------- new table with 859 representatives # comparing sequences from 298622 to 300385 ..................... ---------- 955 remaining sequences to the next cycle ---------- new table with 795 representatives # comparing sequences from 299430 to 301165 ..................... .......... 300000 finished 277018 clusters ---------- 1165 remaining sequences to the next cycle ---------- new table with 549 representatives # comparing sequences from 300000 to 301716 .................... ---------- 984 remaining sequences to the next cycle ---------- new table with 720 representatives # comparing sequences from 300732 to 302423 .................. ---------- 927 remaining sequences to the next cycle ---------- new table with 746 representatives # comparing sequences from 301496 to 303160 ..................... ---------- 1079 remaining sequences to the next cycle ---------- new table with 574 representatives # comparing sequences from 302081 to 303725 .................... 100.0% ---------- 953 remaining sequences to the next cycle ---------- new table with 676 representatives # comparing sequences from 302772 to 304392 ..................... ---------- 902 remaining sequences to the next cycle ---------- new table with 709 representatives # comparing sequences from 303490 to 305085 ..................... ---------- 876 remaining sequences to the next cycle ---------- new table with 711 representatives # comparing sequences from 304209 to 305780 .................... 100.0% ---------- 903 remaining sequences to the next cycle ---------- new table with 647 representatives # comparing sequences from 304877 to 306425 ..................... 100.0% ---------- 667 remaining sequences to the next cycle ---------- new table with 872 representatives # comparing sequences from 305758 to 307275 ..................... ---------- 754 remaining sequences to the next cycle ---------- new table with 736 representatives # comparing sequences from 306521 to 308012 .................... ---------- 1008 remaining sequences to the next cycle ---------- new table with 476 representatives # comparing sequences from 307004 to 308478 .................... ---------- 872 remaining sequences to the next cycle ---------- new table with 582 representatives # comparing sequences from 307606 to 309060 ..................... 100.0% ---------- 672 remaining sequences to the next cycle ---------- new table with 774 representatives # comparing sequences from 308388 to 309815 ................... ---------- 798 remaining sequences to the next cycle ---------- new table with 614 representatives # comparing sequences from 309017 to 310422 ................... 100.0% ---------- 620 remaining sequences to the next cycle ---------- new table with 771 representatives # comparing sequences from 309802 to 311180 .................... .......... 310000 finished 286818 clusters ---------- 730 remaining sequences to the next cycle ---------- new table with 636 representatives # comparing sequences from 310450 to 311805 ..................... 100.0% ---------- 772 remaining sequences to the next cycle ---------- new table with 572 representatives # comparing sequences from 311033 to 312368 .................... ---------- 672 remaining sequences to the next cycle ---------- new table with 649 representatives # comparing sequences from 311696 to 313009 ..................... ---------- 563 remaining sequences to the next cycle ---------- new table with 728 representatives # comparing sequences from 312446 to 313733 .................... ---------- 603 remaining sequences to the next cycle ---------- new table with 679 representatives # comparing sequences from 313130 to 314393 .................... ---------- 530 remaining sequences to the next cycle ---------- new table with 704 representatives # comparing sequences from 313863 to 315101 ..................... ---------- 824 remaining sequences to the next cycle ---------- new table with 409 representatives # comparing sequences from 314277 to 315501 .................... ---------- 755 remaining sequences to the next cycle ---------- new table with 461 representatives # comparing sequences from 314746 to 315953 ..................... 100.0% ---------- 734 remaining sequences to the next cycle ---------- new table with 460 representatives # comparing sequences from 315219 to 316410 .................... ---------- 564 remaining sequences to the next cycle ---------- new table with 618 representatives # comparing sequences from 315846 to 317015 .................... 100.0% ---------- 590 remaining sequences to the next cycle ---------- new table with 568 representatives # comparing sequences from 316425 to 317574 ..................... ---------- 509 remaining sequences to the next cycle ---------- new table with 632 representatives # comparing sequences from 317065 to 318192 .................... ---------- 621 remaining sequences to the next cycle ---------- new table with 494 representatives # comparing sequences from 317571 to 318681 .................... ---------- 509 remaining sequences to the next cycle ---------- new table with 591 representatives # comparing sequences from 318172 to 319261 .................... ---------- 627 remaining sequences to the next cycle ---------- new table with 451 representatives # comparing sequences from 318634 to 319707 ..................... ---------- 494 remaining sequences to the next cycle ---------- new table with 563 representatives # comparing sequences from 319213 to 320266 .................... ---------- 534 remaining sequences to the next cycle ---------- new table with 512 representatives # comparing sequences from 319732 to 320767 ..................... .......... 320000 finished 296612 clusters ---------- 592 remaining sequences to the next cycle ---------- new table with 426 representatives # comparing sequences from 320175 to 321195 ................... ---------- 543 remaining sequences to the next cycle ---------- new table with 469 representatives # comparing sequences from 320652 to 321656 ................... ---------- 597 remaining sequences to the next cycle ---------- new table with 402 representatives # comparing sequences from 321059 to 322049 ................... 100.0% ---------- 582 remaining sequences to the next cycle ---------- new table with 393 representatives # comparing sequences from 321467 to 322443 ................... ---------- 587 remaining sequences to the next cycle ---------- new table with 380 representatives # comparing sequences from 321856 to 322818 .................... ---------- 537 remaining sequences to the next cycle ---------- new table with 422 representatives # comparing sequences from 322281 to 323229 ................... 100.0% ---------- 568 remaining sequences to the next cycle ---------- new table with 369 representatives # comparing sequences from 322661 to 323595 .................... ---------- 508 remaining sequences to the next cycle ---------- new table with 414 representatives # comparing sequences from 323087 to 324007 ................... 100.0% ---------- 439 remaining sequences to the next cycle ---------- new table with 479 representatives # comparing sequences from 323568 to 324471 .................. ---------- 515 remaining sequences to the next cycle ---------- new table with 373 representatives # comparing sequences from 323956 to 324846 .................... ---------- 427 remaining sequences to the next cycle ---------- new table with 451 representatives # comparing sequences from 324419 to 325293 ................... ---------- 515 remaining sequences to the next cycle ---------- new table with 359 representatives # comparing sequences from 324778 to 325639 ................... ---------- 432 remaining sequences to the next cycle ---------- new table with 421 representatives # comparing sequences from 325207 to 326054 .................... ---------- 417 remaining sequences to the next cycle ---------- new table with 402 representatives # comparing sequences from 325637 to 326469 ................... ---------- 396 remaining sequences to the next cycle ---------- new table with 433 representatives # comparing sequences from 326073 to 326890 .................... ---------- 426 remaining sequences to the next cycle ---------- new table with 381 representatives # comparing sequences from 326464 to 327267 .................... ---------- 478 remaining sequences to the next cycle ---------- new table with 315 representatives # comparing sequences from 326789 to 327581 ..................... ---------- 477 remaining sequences to the next cycle ---------- new table with 306 representatives # comparing sequences from 327104 to 327885 .................... ---------- 405 remaining sequences to the next cycle ---------- new table with 373 representatives # comparing sequences from 327480 to 328248 .................... ---------- 460 remaining sequences to the next cycle ---------- new table with 302 representatives # comparing sequences from 327788 to 328546 ..................... 100.0% ---------- 469 remaining sequences to the next cycle ---------- new table with 285 representatives # comparing sequences from 328077 to 328825 .................... ---------- 458 remaining sequences to the next cycle ---------- new table with 283 representatives # comparing sequences from 328367 to 329105 .................... ---------- 439 remaining sequences to the next cycle ---------- new table with 299 representatives # comparing sequences from 328666 to 329393 .................... ---------- 505 remaining sequences to the next cycle ---------- new table with 222 representatives # comparing sequences from 328888 to 329608 ..................... ---------- 381 remaining sequences to the next cycle ---------- new table with 331 representatives # comparing sequences from 329227 to 329935 .................. ---------- 372 remaining sequences to the next cycle ---------- new table with 325 representatives # comparing sequences from 329563 to 330259 ................... ---------- 285 remaining sequences to the next cycle ---------- new table with 404 representatives # comparing sequences from 329974 to 330656 ..................... .......... 330000 finished 306397 clusters ---------- 370 remaining sequences to the next cycle ---------- new table with 311 representatives # comparing sequences from 330286 to 330957 .................... ---------- 305 remaining sequences to the next cycle ---------- new table with 353 representatives # comparing sequences from 330652 to 331311 ................... ---------- 409 remaining sequences to the next cycle ---------- new table with 237 representatives # comparing sequences from 330902 to 331552 ..................... ---------- 515 remaining sequences to the next cycle ---------- new table with 134 representatives # comparing sequences from 331037 to 331683 ................... ---------- 412 remaining sequences to the next cycle ---------- new table with 234 representatives # comparing sequences from 331271 to 331909 ................... ---------- 473 remaining sequences to the next cycle ---------- new table with 165 representatives # comparing sequences from 331436 to 332068 ................... ---------- 421 remaining sequences to the next cycle ---------- new table with 208 representatives # comparing sequences from 331647 to 332272 ................... ---------- 389 remaining sequences to the next cycle ---------- new table with 233 representatives # comparing sequences from 331883 to 332499 ..................... ---------- 382 remaining sequences to the next cycle ---------- new table with 227 representatives # comparing sequences from 332117 to 332725 .................... ---------- 333 remaining sequences to the next cycle ---------- new table with 269 representatives # comparing sequences from 332392 to 332991 ................... ---------- 378 remaining sequences to the next cycle ---------- new table with 220 representatives # comparing sequences from 332613 to 333204 .................. ---------- 391 remaining sequences to the next cycle ---------- new table with 200 representatives # comparing sequences from 332813 to 333397 .................... ---------- 340 remaining sequences to the next cycle ---------- new table with 236 representatives # comparing sequences from 333057 to 333633 .................... ---------- 367 remaining sequences to the next cycle ---------- new table with 205 representatives # comparing sequences from 333266 to 333835 .................... ---------- 354 remaining sequences to the next cycle ---------- new table with 209 representatives # comparing sequences from 333481 to 334042 ................... ---------- 293 remaining sequences to the next cycle ---------- new table with 260 representatives # comparing sequences from 333749 to 334301 .................... ---------- 340 remaining sequences to the next cycle ---------- new table with 208 representatives # comparing sequences from 333961 to 334506 .................... ---------- 357 remaining sequences to the next cycle ---------- new table with 188 representatives # comparing sequences from 334149 to 334687 .................... ---------- 350 remaining sequences to the next cycle ---------- new table with 186 representatives # comparing sequences from 334337 to 334869 .................... ---------- 340 remaining sequences to the next cycle ---------- new table with 185 representatives # comparing sequences from 334529 to 335054 .................... ---------- 292 remaining sequences to the next cycle ---------- new table with 221 representatives # comparing sequences from 334762 to 335279 ..................... ---------- 266 remaining sequences to the next cycle ---------- new table with 247 representatives # comparing sequences from 335013 to 335521 ................... ---------- 278 remaining sequences to the next cycle ---------- new table with 227 representatives # comparing sequences from 335243 to 335744 .................... ---------- 267 remaining sequences to the next cycle ---------- new table with 234 representatives # comparing sequences from 335477 to 335969 .................. ---------- 281 remaining sequences to the next cycle ---------- new table with 211 representatives # comparing sequences from 335688 to 336173 .................. ---------- 253 remaining sequences to the next cycle ---------- new table with 226 representatives # comparing sequences from 335920 to 336397 ..................... ---------- 262 remaining sequences to the next cycle ---------- new table with 208 representatives # comparing sequences from 336135 to 336605 .................... 100.0% ---------- 246 remaining sequences to the next cycle ---------- new table with 220 representatives # comparing sequences from 336359 to 336821 .................... ---------- 277 remaining sequences to the next cycle ---------- new table with 176 representatives # comparing sequences from 336544 to 337000 .................... ---------- 296 remaining sequences to the next cycle ---------- new table with 160 representatives # comparing sequences from 336704 to 337154 ................... ---------- 268 remaining sequences to the next cycle ---------- new table with 181 representatives # comparing sequences from 336886 to 337330 .................... ---------- 248 remaining sequences to the next cycle ---------- new table with 196 representatives # comparing sequences from 337082 to 337519 ................... ---------- 242 remaining sequences to the next cycle ---------- new table with 189 representatives # comparing sequences from 337277 to 337707 ................... 100.0% ---------- 224 remaining sequences to the next cycle ---------- new table with 199 representatives # comparing sequences from 337483 to 337906 ................... ---------- 229 remaining sequences to the next cycle ---------- new table with 187 representatives # comparing sequences from 337677 to 338094 .................... ---------- 257 remaining sequences to the next cycle ---------- new table with 155 representatives # comparing sequences from 337837 to 338248 .................... ---------- 264 remaining sequences to the next cycle ---------- new table with 146 representatives # comparing sequences from 337984 to 338390 .................... ---------- 225 remaining sequences to the next cycle ---------- new table with 180 representatives # comparing sequences from 338165 to 338565 ................... 100.0% ---------- 231 remaining sequences to the next cycle ---------- new table with 167 representatives # comparing sequences from 338334 to 338728 .................... ---------- 258 remaining sequences to the next cycle ---------- new table with 136 representatives # comparing sequences from 338470 to 338859 ................... ---------- 225 remaining sequences to the next cycle ---------- new table with 160 representatives # comparing sequences from 338634 to 339018 .................. 100.0% ---------- 204 remaining sequences to the next cycle ---------- new table with 176 representatives # comparing sequences from 338814 to 339191 .................. ---------- 234 remaining sequences to the next cycle ---------- new table with 140 representatives # comparing sequences from 338957 to 339329 ................... ---------- 233 remaining sequences to the next cycle ---------- new table with 133 representatives # comparing sequences from 339096 to 339464 .................. ---------- 230 remaining sequences to the next cycle ---------- new table with 134 representatives # comparing sequences from 339234 to 339597 .................. ---------- 193 remaining sequences to the next cycle ---------- new table with 164 representatives # comparing sequences from 339404 to 339761 .................... ---------- 227 remaining sequences to the next cycle ---------- new table with 129 representatives # comparing sequences from 339534 to 339887 .................... ---------- 240 remaining sequences to the next cycle ---------- new table with 113 representatives # comparing sequences from 339647 to 339996 ................... ---------- 211 remaining sequences to the next cycle ---------- new table with 138 representatives # comparing sequences from 339785 to 340129 .................... ---------- 222 remaining sequences to the next cycle ---------- new table with 120 representatives # comparing sequences from 339907 to 340247 .................... .......... 340000 finished 316204 clusters ---------- 195 remaining sequences to the next cycle ---------- new table with 142 representatives # comparing sequences from 340052 to 340387 ................... ---------- 213 remaining sequences to the next cycle ---------- new table with 121 representatives # comparing sequences from 340174 to 340505 .................. ---------- 190 remaining sequences to the next cycle ---------- new table with 136 representatives # comparing sequences from 340315 to 340641 .................. ---------- 170 remaining sequences to the next cycle ---------- new table with 149 representatives # comparing sequences from 340471 to 340791 ................... ---------- 196 remaining sequences to the next cycle ---------- new table with 120 representatives # comparing sequences from 340595 to 340911 ................... ---------- 205 remaining sequences to the next cycle ---------- new table with 110 representatives # comparing sequences from 340706 to 341018 ................... ---------- 203 remaining sequences to the next cycle ---------- new table with 109 representatives # comparing sequences from 340815 to 341123 .................... 100.0% ---------- 174 remaining sequences to the next cycle ---------- new table with 133 representatives # comparing sequences from 340949 to 341253 .................... ---------- 199 remaining sequences to the next cycle ---------- new table with 105 representatives # comparing sequences from 341054 to 341354 ................... ---------- 198 remaining sequences to the next cycle ---------- new table with 102 representatives # comparing sequences from 341156 to 341453 .................... ---------- 195 remaining sequences to the next cycle ---------- new table with 102 representatives # comparing sequences from 341258 to 341551 .................... ---------- 162 remaining sequences to the next cycle ---------- new table with 127 representatives # comparing sequences from 341389 to 341678 ................... ---------- 180 remaining sequences to the next cycle ---------- new table with 107 representatives # comparing sequences from 341498 to 341783 ................... ---------- 184 remaining sequences to the next cycle ---------- new table with 101 representatives # comparing sequences from 341599 to 341880 .................. ---------- 161 remaining sequences to the next cycle ---------- new table with 118 representatives # comparing sequences from 341719 to 341996 .................... ---------- 173 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 341823 to 342097 .................... ---------- 146 remaining sequences to the next cycle ---------- new table with 117 representatives # comparing sequences from 341951 to 342220 .................... ---------- 144 remaining sequences to the next cycle ---------- new table with 123 representatives # comparing sequences from 342076 to 342341 ................... 100.0% ---------- 152 remaining sequences to the next cycle ---------- new table with 113 representatives # comparing sequences from 342189 to 342450 .................. ---------- 146 remaining sequences to the next cycle ---------- new table with 115 representatives # comparing sequences from 342304 to 342561 ................... ---------- 157 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 342404 to 342658 .................... ---------- 144 remaining sequences to the next cycle ---------- new table with 110 representatives # comparing sequences from 342514 to 342764 ................... ---------- 144 remaining sequences to the next cycle ---------- new table with 106 representatives # comparing sequences from 342620 to 342866 .................. ---------- 144 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 342722 to 342965 ................. ---------- 140 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 342825 to 343064 ................... ---------- 135 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 342929 to 343165 .................... ---------- 110 remaining sequences to the next cycle ---------- new table with 122 representatives # comparing sequences from 343055 to 343286 .................... ---------- 110 remaining sequences to the next cycle ---------- new table with 117 representatives # comparing sequences from 343176 to 343403 ................... ---------- 107 remaining sequences to the next cycle ---------- new table with 114 representatives # comparing sequences from 343296 to 343519 ................... ---------- 113 remaining sequences to the next cycle ---------- new table with 108 representatives # comparing sequences from 343406 to 343625 ................... ---------- 115 remaining sequences to the next cycle ---------- new table with 102 representatives # comparing sequences from 343510 to 343725 ................... ---------- 114 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 343611 to 343823 ................... ---------- 112 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 343711 to 343920 ................... ---------- 107 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 343813 to 344018 ................... ---------- 105 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 343913 to 344115 .................... ---------- 101 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 344014 to 344212 .................... ---------- 96 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 344116 to 344311 .................... 100.0% ---------- 93 remaining sequences to the next cycle ---------- new table with 101 representatives # comparing sequences from 344218 to 344409 .................. ---------- 89 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 344320 to 344508 .................. ---------- 83 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 344425 to 344609 .................. ---------- 82 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 344527 to 344707 .................. ---------- 76 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 344631 to 344808 ................... ---------- 75 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 344733 to 344906 ................... ---------- 70 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 344836 to 345006 ................. ---------- 69 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 344937 to 345103 ................... ---------- 65 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 345038 to 345201 .................. ---------- 63 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 345138 to 345297 .................... ---------- 58 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 345239 to 345395 .................... ---------- 56 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 345339 to 345491 ................... ---------- 51 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 345440 to 345589 .................. ---------- 47 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 345542 to 345687 .................. ---------- 43 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 345644 to 345786 .................. ---------- 38 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 345748 to 345886 .................... ---------- 32 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 345854 to 345989 ................... ---------- 33 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 345956 to 346087 ............... ---------- 22 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 346065 to 346192 ................. ---------- 22 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 346170 to 346294 .................. ---------- 20 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 346274 to 346394 ................. ---------- 18 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 346376 to 346493 ................... ---------- 17 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 346476 to 346589 ................... ---------- 13 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 346576 to 346686 .................. ---------- 8 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 346678 to 346784 .................. ---------- 6 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 346778 to 346881 ................. ---------- 2 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 346879 to 346978 ....................---------- new table with 99 representatives # comparing sequences from 346978 to 347074 ...................---------- new table with 93 representatives # comparing sequences from 347074 to 347167 ...................---------- new table with 93 representatives # comparing sequences from 347167 to 347256 ..................---------- new table with 89 representatives # comparing sequences from 347256 to 347342 ...............---------- new table with 81 representatives # comparing sequences from 347342 to 347425 ...............---------- new table with 80 representatives # comparing sequences from 347425 to 347505 ..............---------- new table with 78 representatives # comparing sequences from 347505 to 347583 ...................---------- new table with 77 representatives # comparing sequences from 347583 to 347658 .................---------- new table with 72 representatives # comparing sequences from 347658 to 347730 ..................---------- new table with 69 representatives # comparing sequences from 347730 to 347800 .................---------- new table with 70 representatives # comparing sequences from 347800 to 347868 .................---------- new table with 68 representatives # comparing sequences from 347868 to 347933 .................---------- new table with 65 representatives # comparing sequences from 347933 to 347996 ...............---------- new table with 63 representatives # comparing sequences from 347996 to 348057 .................---------- new table with 61 representatives # comparing sequences from 348057 to 348116 ....................---------- new table with 59 representatives # comparing sequences from 348116 to 348173 ...................---------- new table with 56 representatives # comparing sequences from 348173 to 348228 ..................---------- new table with 55 representatives # comparing sequences from 348228 to 348281 ..................---------- new table with 53 representatives # comparing sequences from 348281 to 348332 .................---------- new table with 51 representatives # comparing sequences from 348332 to 348381 ...............---------- new table with 47 representatives # comparing sequences from 348381 to 348429 ................---------- new table with 48 representatives # comparing sequences from 348429 to 348475 ................---------- new table with 45 representatives # comparing sequences from 348475 to 348519 ..............---------- new table with 43 representatives # comparing sequences from 348519 to 348562 ..............---------- new table with 41 representatives # comparing sequences from 348562 to 348603 .............---------- new table with 40 representatives # comparing sequences from 348603 to 348643 ..............---------- new table with 40 representatives # comparing sequences from 348643 to 348681 ..................---------- new table with 37 representatives # comparing sequences from 348681 to 348718 ..................---------- new table with 37 representatives # comparing sequences from 348718 to 348754 .................---------- new table with 35 representatives # comparing sequences from 348754 to 348789 .................---------- new table with 34 representatives # comparing sequences from 348789 to 349773 .....................---------- new table with 961 representatives 349773 finished 325783 clusters Approximated maximum memory consumption: 975M writing new database writing clustering information program completed ! Total CPU time 3577.32 ================================================================ Program: CD-HIT, V4.8.1 (+OpenMP), Jul 24 2019, 13:13:52 Command: /gscratch/srlab/programs/cd-hit-v4.8.1-2019-0228/cd-hit-est -o gonad.cdhit -c 0.98 -i /gscratch/srlab/sam/data/P_generosa/transcriptomes/gonad/Trinity.fasta -p 1 -d 0 -b 3 -T 27 -M 0 Started: Mon Jul 29 12:11:29 2019 ================================================================ Output ---------------------------------------------------------------- total seq: 198748 longest and shortest : 21301 and 183 Total letters: 103810995 Sequences have been sorted Approximated minimal memory consumption: Sequence : 131M Buffer : 27 X 16M = 433M Table : 2 X 19M = 39M Miscellaneous : 6M Total : 611M Table limit with the given memory limit: Max number of representatives: 458974 Max number of word counting entries: 43677194 # comparing sequences from 0 to 867 ---------- new table with 552 representatives # comparing sequences from 867 to 7690 ..................... ---------- 6238 remaining sequences to the next cycle ---------- new table with 395 representatives # comparing sequences from 1452 to 8255 .................... ---------- 6313 remaining sequences to the next cycle ---------- new table with 376 representatives # comparing sequences from 1942 to 8728 ..................... ---------- 6197 remaining sequences to the next cycle ---------- new table with 427 representatives # comparing sequences from 2531 to 9297 ..................... ---------- 6226 remaining sequences to the next cycle ---------- new table with 417 representatives # comparing sequences from 3071 to 9818 .................... ---------- 6039 remaining sequences to the next cycle ---------- new table with 531 representatives # comparing sequences from 3779 to 10502 ..................... ---------- 5948 remaining sequences to the next cycle ---------- new table with 606 representatives # comparing sequences from 4554 to 11250 ..................... ---------- 5885 remaining sequences to the next cycle ---------- new table with 645 representatives # comparing sequences from 5365 to 12033 .................... 100.0% ---------- 5742 remaining sequences to the next cycle ---------- new table with 753 representatives # comparing sequences from 6291 to 12927 ..................... ---------- 5655 remaining sequences to the next cycle ---------- new table with 812 representatives # comparing sequences from 7272 to 13874 .................. ---------- 5527 remaining sequences to the next cycle ---------- new table with 887 representatives # comparing sequences from 8347 to 14912 ..................... ---------- 5425 remaining sequences to the next cycle ---------- new table with 964 representatives # comparing sequences from 9487 to 16013 ................... .......... 10000 finished 7812 clusters ---------- 5467 remaining sequences to the next cycle ---------- new table with 928 representatives # comparing sequences from 10546 to 17035 ................... ---------- 5270 remaining sequences to the next cycle ---------- new table with 1066 representatives # comparing sequences from 11765 to 18212 ..................... ---------- 5255 remaining sequences to the next cycle ---------- new table with 1044 representatives # comparing sequences from 12957 to 19363 ...................... ---------- 5006 remaining sequences to the next cycle ---------- new table with 1244 representatives # comparing sequences from 14357 to 20715 ..................... ---------- 5088 remaining sequences to the next cycle ---------- new table with 1139 representatives # comparing sequences from 15627 to 21941 ..................... ---------- 4794 remaining sequences to the next cycle ---------- new table with 1358 representatives # comparing sequences from 17147 to 23409 ..................... ---------- 4781 remaining sequences to the next cycle ---------- new table with 1332 representatives # comparing sequences from 18628 to 24839 .................... .......... 20000 finished 16712 clusters ---------- 4604 remaining sequences to the next cycle ---------- new table with 1452 representatives # comparing sequences from 20235 to 26390 ...................... ---------- 4386 remaining sequences to the next cycle ---------- new table with 1607 representatives # comparing sequences from 22004 to 28098 ................... ---------- 4320 remaining sequences to the next cycle ---------- new table with 1643 representatives # comparing sequences from 23778 to 29811 ...................... ---------- 4281 remaining sequences to the next cycle ---------- new table with 1623 representatives # comparing sequences from 25530 to 31503 ...................... ---------- 4016 remaining sequences to the next cycle ---------- new table with 1824 representatives # comparing sequences from 27487 to 33392 ...................... ---------- 4049 remaining sequences to the next cycle ---------- new table with 1739 representatives # comparing sequences from 29343 to 35184 .................... .......... 30000 finished 25974 clusters . ---------- 3859 remaining sequences to the next cycle ---------- new table with 1864 representatives # comparing sequences from 31325 to 37098 ...................... ---------- 3595 remaining sequences to the next cycle ---------- new table with 2025 representatives # comparing sequences from 33503 to 39201 ...................... ---------- 3417 remaining sequences to the next cycle ---------- new table with 2131 representatives # comparing sequences from 35784 to 41403 ...................... ---------- 3525 remaining sequences to the next cycle ---------- new table with 1965 representatives # comparing sequences from 37878 to 43425 ...................... .......... 40000 finished 35340 clusters ---------- 3226 remaining sequences to the next cycle ---------- new table with 2175 representatives # comparing sequences from 40199 to 45666 .................... ---------- 3062 remaining sequences to the next cycle ---------- new table with 2261 representatives # comparing sequences from 42604 to 47988 ....................... ---------- 2874 remaining sequences to the next cycle ---------- new table with 2361 representatives # comparing sequences from 45114 to 50411 ...................... ---------- 3019 remaining sequences to the next cycle ---------- new table with 2140 representatives # comparing sequences from 47392 to 52611 ...................... ---------- 2939 remaining sequences to the next cycle ---------- new table with 2172 representatives # comparing sequences from 49672 to 54812 .................... .......... 50000 finished 44768 clusters .. ---------- 2751 remaining sequences to the next cycle ---------- new table with 2256 representatives # comparing sequences from 52061 to 57119 ...................... ---------- 2729 remaining sequences to the next cycle ---------- new table with 2192 representatives # comparing sequences from 54390 to 59367 ...................... ---------- 2776 remaining sequences to the next cycle ---------- new table with 2103 representatives # comparing sequences from 56591 to 61492 ...................... ---------- 2425 remaining sequences to the next cycle ---------- new table with 2362 representatives # comparing sequences from 59067 to 63883 .................... .......... 60000 finished 54277 clusters . ---------- 2356 remaining sequences to the next cycle ---------- new table with 2369 representatives # comparing sequences from 61527 to 66258 ....................... ---------- 2229 remaining sequences to the next cycle ---------- new table with 2400 representatives # comparing sequences from 64029 to 68674 ...................... ---------- 2337 remaining sequences to the next cycle ---------- new table with 2181 representatives # comparing sequences from 66337 to 70902 ..................... ---------- 2392 remaining sequences to the next cycle ---------- new table with 2076 representatives # comparing sequences from 68510 to 73000 ..................... .......... 70000 finished 63810 clusters ---------- 2344 remaining sequences to the next cycle ---------- new table with 2048 representatives # comparing sequences from 70656 to 75072 ...................... ---------- 2047 remaining sequences to the next cycle ---------- new table with 2259 representatives # comparing sequences from 73025 to 77360 ...................... 100.0% ---------- 1934 remaining sequences to the next cycle ---------- new table with 2299 representatives # comparing sequences from 75426 to 79678 ..................... 100.0% ---------- 1887 remaining sequences to the next cycle ---------- new table with 2261 representatives # comparing sequences from 77791 to 81961 ...................... ---------- 2071 remaining sequences to the next cycle ---------- new table with 2009 representatives # comparing sequences from 79890 to 83988 ..................... .......... 80000 finished 73380 clusters .. ---------- 1849 remaining sequences to the next cycle ---------- new table with 2159 representatives # comparing sequences from 82139 to 86160 ...................... 100.0% ---------- 1724 remaining sequences to the next cycle ---------- new table with 2201 representatives # comparing sequences from 84436 to 88377 ...................... ---------- 1649 remaining sequences to the next cycle ---------- new table with 2206 representatives # comparing sequences from 86728 to 90590 ..................... ---------- 1815 remaining sequences to the next cycle ---------- new table with 1969 representatives # comparing sequences from 88775 to 92567 ..................... .......... 90000 finished 82973 clusters ---------- 1598 remaining sequences to the next cycle ---------- new table with 2104 representatives # comparing sequences from 90969 to 94685 ...................... ---------- 1769 remaining sequences to the next cycle ---------- new table with 1877 representatives # comparing sequences from 92916 to 96565 ...................... ---------- 1701 remaining sequences to the next cycle ---------- new table with 1871 representatives # comparing sequences from 94864 to 98446 .................... ---------- 1524 remaining sequences to the next cycle ---------- new table with 1986 representatives # comparing sequences from 96922 to 100433 ....................... ---------- 1407 remaining sequences to the next cycle ---------- new table with 2028 representatives # comparing sequences from 99026 to 102464 ................... .......... 100000 finished 92609 clusters ---------- 1502 remaining sequences to the next cycle ---------- new table with 1844 representatives # comparing sequences from 100962 to 104333 ...................... ---------- 1422 remaining sequences to the next cycle ---------- new table with 1887 representatives # comparing sequences from 102911 to 106215 ...................... ---------- 1560 remaining sequences to the next cycle ---------- new table with 1672 representatives # comparing sequences from 104655 to 107899 ..................... ---------- 1517 remaining sequences to the next cycle ---------- new table with 1656 representatives # comparing sequences from 106382 to 109567 ...................... ---------- 1395 remaining sequences to the next cycle ---------- new table with 1725 representatives # comparing sequences from 108172 to 111295 ...................... .......... 110000 finished 102220 clusters ---------- 1270 remaining sequences to the next cycle ---------- new table with 1786 representatives # comparing sequences from 110025 to 113084 .................... 100.0% ---------- 1409 remaining sequences to the next cycle ---------- new table with 1605 representatives # comparing sequences from 111675 to 114677 ...................... ---------- 1252 remaining sequences to the next cycle ---------- new table with 1701 representatives # comparing sequences from 113425 to 116367 ..................... ---------- 1525 remaining sequences to the next cycle ---------- new table with 1369 representatives # comparing sequences from 114842 to 117735 ..................... ---------- 1414 remaining sequences to the next cycle ---------- new table with 1434 representatives # comparing sequences from 116321 to 119163 .................... ---------- 1222 remaining sequences to the next cycle ---------- new table with 1581 representatives # comparing sequences from 117941 to 120727 ...................... ---------- 1104 remaining sequences to the next cycle ---------- new table with 1637 representatives # comparing sequences from 119623 to 122351 ..................... .......... 120000 finished 111939 clusters . ---------- 1304 remaining sequences to the next cycle ---------- new table with 1393 representatives # comparing sequences from 121047 to 123726 ..................... ---------- 1179 remaining sequences to the next cycle ---------- new table with 1457 representatives # comparing sequences from 122547 to 125174 ..................... ---------- 1292 remaining sequences to the next cycle ---------- new table with 1292 representatives # comparing sequences from 123882 to 126463 ...................... ---------- 1312 remaining sequences to the next cycle ---------- new table with 1241 representatives # comparing sequences from 125151 to 127688 ..................... 100.0% ---------- 1351 remaining sequences to the next cycle ---------- new table with 1169 representatives # comparing sequences from 126337 to 128833 ..................... ---------- 1358 remaining sequences to the next cycle ---------- new table with 1112 representatives # comparing sequences from 127475 to 129932 .................... ---------- 1148 remaining sequences to the next cycle ---------- new table with 1281 representatives # comparing sequences from 128784 to 131196 .................... .......... 130000 finished 121700 clusters ---------- 1029 remaining sequences to the next cycle ---------- new table with 1345 representatives # comparing sequences from 130167 to 132531 ..................... ---------- 1021 remaining sequences to the next cycle ---------- new table with 1326 representatives # comparing sequences from 131510 to 133828 .................... ---------- 1006 remaining sequences to the next cycle ---------- new table with 1281 representatives # comparing sequences from 132822 to 135095 ..................... ---------- 1162 remaining sequences to the next cycle ---------- new table with 1092 representatives # comparing sequences from 133933 to 136168 ...................... ---------- 1024 remaining sequences to the next cycle ---------- new table with 1192 representatives # comparing sequences from 135144 to 137337 ..................... ---------- 1022 remaining sequences to the next cycle ---------- new table with 1150 representatives # comparing sequences from 136315 to 138467 ..................... ---------- 975 remaining sequences to the next cycle ---------- new table with 1140 representatives # comparing sequences from 137492 to 139604 ..................... ---------- 1146 remaining sequences to the next cycle ---------- new table with 950 representatives # comparing sequences from 138458 to 140536 ..................... ---------- 1338 remaining sequences to the next cycle ---------- new table with 728 representatives # comparing sequences from 139198 to 141251 ..................... .......... 140000 finished 131512 clusters 100.0% ---------- 1238 remaining sequences to the next cycle ---------- new table with 805 representatives # comparing sequences from 140013 to 142038 .................... ---------- 1162 remaining sequences to the next cycle ---------- new table with 848 representatives # comparing sequences from 140876 to 142871 .................... ---------- 1013 remaining sequences to the next cycle ---------- new table with 959 representatives # comparing sequences from 141858 to 143819 ..................... ---------- 957 remaining sequences to the next cycle ---------- new table with 983 representatives # comparing sequences from 142862 to 144789 ..................... ---------- 1114 remaining sequences to the next cycle ---------- new table with 795 representatives # comparing sequences from 143675 to 145574 ..................... ---------- 1061 remaining sequences to the next cycle ---------- new table with 821 representatives # comparing sequences from 144513 to 146383 ..................... ---------- 954 remaining sequences to the next cycle ---------- new table with 897 representatives # comparing sequences from 145429 to 147267 ..................... ---------- 890 remaining sequences to the next cycle ---------- new table with 931 representatives # comparing sequences from 146377 to 148182 ..................... ---------- 1012 remaining sequences to the next cycle ---------- new table with 782 representatives # comparing sequences from 147170 to 148948 ..................... ---------- 909 remaining sequences to the next cycle ---------- new table with 859 representatives # comparing sequences from 148039 to 149787 .................... ---------- 1013 remaining sequences to the next cycle ---------- new table with 727 representatives # comparing sequences from 148774 to 150497 ................... ---------- 992 remaining sequences to the next cycle ---------- new table with 714 representatives # comparing sequences from 149505 to 151203 .................... ---------- 1096 remaining sequences to the next cycle ---------- new table with 599 representatives # comparing sequences from 150107 to 151784 .................... ---------- 920 remaining sequences to the next cycle ---------- new table with 748 representatives # comparing sequences from 150864 to 152515 ..................... ---------- 844 remaining sequences to the next cycle ---------- new table with 792 representatives # comparing sequences from 151671 to 153294 ..................... ---------- 895 remaining sequences to the next cycle ---------- new table with 710 representatives # comparing sequences from 152399 to 153997 ..................... ---------- 825 remaining sequences to the next cycle ---------- new table with 767 representatives # comparing sequences from 153172 to 154743 .................... ---------- 890 remaining sequences to the next cycle ---------- new table with 678 representatives # comparing sequences from 153853 to 155401 .................... 100.0% ---------- 808 remaining sequences to the next cycle ---------- new table with 722 representatives # comparing sequences from 154593 to 156115 ..................... ---------- 751 remaining sequences to the next cycle ---------- new table with 752 representatives # comparing sequences from 155364 to 156860 .................... ---------- 960 remaining sequences to the next cycle ---------- new table with 532 representatives # comparing sequences from 155900 to 157377 ..................... ---------- 790 remaining sequences to the next cycle ---------- new table with 670 representatives # comparing sequences from 156587 to 158040 .................... ---------- 733 remaining sequences to the next cycle ---------- new table with 705 representatives # comparing sequences from 157307 to 158736 ..................... ---------- 727 remaining sequences to the next cycle ---------- new table with 695 representatives # comparing sequences from 158009 to 159413 .................... ---------- 710 remaining sequences to the next cycle ---------- new table with 675 representatives # comparing sequences from 158703 to 160083 .................... ---------- 801 remaining sequences to the next cycle ---------- new table with 575 representatives # comparing sequences from 159282 to 160642 .................... ---------- 825 remaining sequences to the next cycle ---------- new table with 525 representatives # comparing sequences from 159817 to 161159 .................... .......... 160000 finished 151169 clusters 100.0% ---------- 731 remaining sequences to the next cycle ---------- new table with 606 representatives # comparing sequences from 160428 to 161749 ................... 100.0% ---------- 811 remaining sequences to the next cycle ---------- new table with 501 representatives # comparing sequences from 160938 to 162241 ................... ---------- 617 remaining sequences to the next cycle ---------- new table with 677 representatives # comparing sequences from 161624 to 162904 ..................... ---------- 536 remaining sequences to the next cycle ---------- new table with 726 representatives # comparing sequences from 162368 to 163622 .................... ---------- 630 remaining sequences to the next cycle ---------- new table with 607 representatives # comparing sequences from 162992 to 164224 ..................... ---------- 743 remaining sequences to the next cycle ---------- new table with 485 representatives # comparing sequences from 163481 to 164697 ................... ---------- 659 remaining sequences to the next cycle ---------- new table with 543 representatives # comparing sequences from 164038 to 165234 .................... ---------- 649 remaining sequences to the next cycle ---------- new table with 541 representatives # comparing sequences from 164585 to 165763 ..................... ---------- 761 remaining sequences to the next cycle ---------- new table with 415 representatives # comparing sequences from 165002 to 166165 .................... ---------- 653 remaining sequences to the next cycle ---------- new table with 501 representatives # comparing sequences from 165512 to 166658 ..................... ---------- 626 remaining sequences to the next cycle ---------- new table with 516 representatives # comparing sequences from 166032 to 167160 ................... ---------- 690 remaining sequences to the next cycle ---------- new table with 426 representatives # comparing sequences from 166470 to 167583 .................... ---------- 618 remaining sequences to the next cycle ---------- new table with 490 representatives # comparing sequences from 166965 to 168060 .................... ---------- 597 remaining sequences to the next cycle ---------- new table with 488 representatives # comparing sequences from 167463 to 168541 ................... 100.0% ---------- 579 remaining sequences to the next cycle ---------- new table with 496 representatives # comparing sequences from 167962 to 169023 .................... ---------- 579 remaining sequences to the next cycle ---------- new table with 480 representatives # comparing sequences from 168444 to 169488 ................... ---------- 560 remaining sequences to the next cycle ---------- new table with 472 representatives # comparing sequences from 168928 to 169956 ..................... ---------- 565 remaining sequences to the next cycle ---------- new table with 458 representatives # comparing sequences from 169391 to 170403 .................... 100.0% ---------- 628 remaining sequences to the next cycle ---------- new table with 375 representatives # comparing sequences from 169775 to 170774 ..................... .......... 170000 finished 161013 clusters 100.0% ---------- 573 remaining sequences to the next cycle ---------- new table with 425 representatives # comparing sequences from 170201 to 171185 ................... ---------- 554 remaining sequences to the next cycle ---------- new table with 426 representatives # comparing sequences from 170631 to 171600 .................... ---------- 604 remaining sequences to the next cycle ---------- new table with 357 representatives # comparing sequences from 170996 to 171952 .................... ---------- 542 remaining sequences to the next cycle ---------- new table with 408 representatives # comparing sequences from 171410 to 172352 ................... ---------- 534 remaining sequences to the next cycle ---------- new table with 404 representatives # comparing sequences from 171818 to 172746 ..................... ---------- 514 remaining sequences to the next cycle ---------- new table with 405 representatives # comparing sequences from 172232 to 173146 .................... ---------- 514 remaining sequences to the next cycle ---------- new table with 395 representatives # comparing sequences from 172632 to 173532 .................... 100.0% ---------- 522 remaining sequences to the next cycle ---------- new table with 377 representatives # comparing sequences from 173010 to 173897 ................... ---------- 492 remaining sequences to the next cycle ---------- new table with 382 representatives # comparing sequences from 173405 to 174278 ................... ---------- 544 remaining sequences to the next cycle ---------- new table with 325 representatives # comparing sequences from 173734 to 174596 ..................... 100.0% ---------- 507 remaining sequences to the next cycle ---------- new table with 355 representatives # comparing sequences from 174089 to 174939 .................... ---------- 483 remaining sequences to the next cycle ---------- new table with 362 representatives # comparing sequences from 174456 to 175293 ................... ---------- 533 remaining sequences to the next cycle ---------- new table with 299 representatives # comparing sequences from 174760 to 175587 ..................... ---------- 470 remaining sequences to the next cycle ---------- new table with 355 representatives # comparing sequences from 175117 to 175931 ................... ---------- 714 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 175217 to 176028 .................... ---------- 517 remaining sequences to the next cycle ---------- new table with 292 representatives # comparing sequences from 175511 to 176312 .................... ---------- 495 remaining sequences to the next cycle ---------- new table with 298 representatives # comparing sequences from 175817 to 176607 .................... ---------- 458 remaining sequences to the next cycle ---------- new table with 329 representatives # comparing sequences from 176149 to 176928 .................... ---------- 460 remaining sequences to the next cycle ---------- new table with 316 representatives # comparing sequences from 176468 to 177236 .................... ---------- 435 remaining sequences to the next cycle ---------- new table with 325 representatives # comparing sequences from 176801 to 177557 ..................... 100.0% ---------- 437 remaining sequences to the next cycle ---------- new table with 316 representatives # comparing sequences from 177120 to 177865 ................... ---------- 430 remaining sequences to the next cycle ---------- new table with 312 representatives # comparing sequences from 177435 to 178169 .................... ---------- 446 remaining sequences to the next cycle ---------- new table with 285 representatives # comparing sequences from 177723 to 178448 ................... ---------- 465 remaining sequences to the next cycle ---------- new table with 257 representatives # comparing sequences from 177983 to 178699 ..................... ---------- 419 remaining sequences to the next cycle ---------- new table with 293 representatives # comparing sequences from 178280 to 178985 ................... ---------- 412 remaining sequences to the next cycle ---------- new table with 291 representatives # comparing sequences from 178573 to 179268 ................... 100.0% ---------- 412 remaining sequences to the next cycle ---------- new table with 281 representatives # comparing sequences from 178856 to 179541 ................... ---------- 390 remaining sequences to the next cycle ---------- new table with 288 representatives # comparing sequences from 179151 to 179826 .................. ---------- 363 remaining sequences to the next cycle ---------- new table with 306 representatives # comparing sequences from 179463 to 180128 .................. ---------- 360 remaining sequences to the next cycle ---------- new table with 302 representatives # comparing sequences from 179768 to 180422 .................... ---------- 484 remaining sequences to the next cycle ---------- new table with 170 representatives # comparing sequences from 179938 to 180586 ..................... .......... 180000 finished 170883 clusters ---------- 406 remaining sequences to the next cycle ---------- new table with 234 representatives # comparing sequences from 180180 to 180820 .................... ---------- 423 remaining sequences to the next cycle ---------- new table with 213 representatives # comparing sequences from 180397 to 181029 .................... 100.0% ---------- 434 remaining sequences to the next cycle ---------- new table with 196 representatives # comparing sequences from 180595 to 181220 .................... ---------- 379 remaining sequences to the next cycle ---------- new table with 246 representatives # comparing sequences from 180841 to 181458 ..................... ---------- 409 remaining sequences to the next cycle ---------- new table with 206 representatives # comparing sequences from 181049 to 181659 .................. ---------- 387 remaining sequences to the next cycle ---------- new table with 219 representatives # comparing sequences from 181272 to 181874 .................. ---------- 356 remaining sequences to the next cycle ---------- new table with 241 representatives # comparing sequences from 181518 to 182112 .................... ---------- 340 remaining sequences to the next cycle ---------- new table with 246 representatives # comparing sequences from 181772 to 182357 ................... ---------- 380 remaining sequences to the next cycle ---------- new table with 202 representatives # comparing sequences from 181977 to 182555 .................... ---------- 349 remaining sequences to the next cycle ---------- new table with 226 representatives # comparing sequences from 182206 to 182776 ................... ---------- 339 remaining sequences to the next cycle ---------- new table with 227 representatives # comparing sequences from 182437 to 182999 ................... ---------- 326 remaining sequences to the next cycle ---------- new table with 228 representatives # comparing sequences from 182673 to 183227 ................... ---------- 356 remaining sequences to the next cycle ---------- new table with 194 representatives # comparing sequences from 182871 to 183418 .................... ---------- 328 remaining sequences to the next cycle ---------- new table with 218 representatives # comparing sequences from 183090 to 183629 .................... ---------- 353 remaining sequences to the next cycle ---------- new table with 184 representatives # comparing sequences from 183276 to 183809 .................... ---------- 328 remaining sequences to the next cycle ---------- new table with 204 representatives # comparing sequences from 183481 to 184007 .................... 100.0% ---------- 351 remaining sequences to the next cycle ---------- new table with 174 representatives # comparing sequences from 183656 to 184176 ................... ---------- 342 remaining sequences to the next cycle ---------- new table with 174 representatives # comparing sequences from 183834 to 184348 ..................... ---------- 337 remaining sequences to the next cycle ---------- new table with 176 representatives # comparing sequences from 184011 to 184519 ................... ---------- 333 remaining sequences to the next cycle ---------- new table with 171 representatives # comparing sequences from 184186 to 184688 ................... 100.0% ---------- 302 remaining sequences to the next cycle ---------- new table with 196 representatives # comparing sequences from 184386 to 184881 .................... ---------- 310 remaining sequences to the next cycle ---------- new table with 183 representatives # comparing sequences from 184571 to 185059 .................... ---------- 310 remaining sequences to the next cycle ---------- new table with 178 representatives # comparing sequences from 184749 to 185231 .................... ---------- 286 remaining sequences to the next cycle ---------- new table with 189 representatives # comparing sequences from 184945 to 185420 .................... ---------- 280 remaining sequences to the next cycle ---------- new table with 192 representatives # comparing sequences from 185140 to 185609 ................... ---------- 274 remaining sequences to the next cycle ---------- new table with 189 representatives # comparing sequences from 185335 to 185797 ................... ---------- 271 remaining sequences to the next cycle ---------- new table with 187 representatives # comparing sequences from 185526 to 185981 .................... ---------- 273 remaining sequences to the next cycle ---------- new table with 180 representatives # comparing sequences from 185708 to 186157 ................... ---------- 297 remaining sequences to the next cycle ---------- new table with 150 representatives # comparing sequences from 185860 to 186304 ..................... ---------- 303 remaining sequences to the next cycle ---------- new table with 141 representatives # comparing sequences from 186001 to 186440 .................... ---------- 293 remaining sequences to the next cycle ---------- new table with 144 representatives # comparing sequences from 186147 to 186581 ................... ---------- 257 remaining sequences to the next cycle ---------- new table with 171 representatives # comparing sequences from 186324 to 186752 ................... ---------- 249 remaining sequences to the next cycle ---------- new table with 173 representatives # comparing sequences from 186503 to 186925 ................... ---------- 273 remaining sequences to the next cycle ---------- new table with 145 representatives # comparing sequences from 186652 to 187069 .................... ---------- 279 remaining sequences to the next cycle ---------- new table with 138 representatives # comparing sequences from 186790 to 187202 .................... ---------- 278 remaining sequences to the next cycle ---------- new table with 133 representatives # comparing sequences from 186924 to 187331 .................... ---------- 273 remaining sequences to the next cycle ---------- new table with 133 representatives # comparing sequences from 187058 to 187461 ................... ---------- 271 remaining sequences to the next cycle ---------- new table with 132 representatives # comparing sequences from 187190 to 187588 .................... ---------- 238 remaining sequences to the next cycle ---------- new table with 156 representatives # comparing sequences from 187350 to 187743 .................... ---------- 235 remaining sequences to the next cycle ---------- new table with 156 representatives # comparing sequences from 187508 to 187895 ................... ---------- 228 remaining sequences to the next cycle ---------- new table with 158 representatives # comparing sequences from 187667 to 188049 ................... ---------- 251 remaining sequences to the next cycle ---------- new table with 129 representatives # comparing sequences from 187798 to 188175 .................. ---------- 220 remaining sequences to the next cycle ---------- new table with 152 representatives # comparing sequences from 187955 to 188327 ................... ---------- 223 remaining sequences to the next cycle ---------- new table with 146 representatives # comparing sequences from 188104 to 188471 ................... ---------- 221 remaining sequences to the next cycle ---------- new table with 144 representatives # comparing sequences from 188250 to 188612 ................... ---------- 220 remaining sequences to the next cycle ---------- new table with 142 representatives # comparing sequences from 188392 to 188749 .................... ---------- 234 remaining sequences to the next cycle ---------- new table with 121 representatives # comparing sequences from 188515 to 188867 ................... 100.0% ---------- 212 remaining sequences to the next cycle ---------- new table with 138 representatives # comparing sequences from 188655 to 189003 .................... ---------- 205 remaining sequences to the next cycle ---------- new table with 140 representatives # comparing sequences from 188798 to 189141 ................... ---------- 202 remaining sequences to the next cycle ---------- new table with 137 representatives # comparing sequences from 188939 to 189277 .................... ---------- 200 remaining sequences to the next cycle ---------- new table with 138 representatives # comparing sequences from 189077 to 189410 ................... ---------- 198 remaining sequences to the next cycle ---------- new table with 133 representatives # comparing sequences from 189212 to 189540 ................... ---------- 219 remaining sequences to the next cycle ---------- new table with 109 representatives # comparing sequences from 189321 to 189646 .................. ---------- 200 remaining sequences to the next cycle ---------- new table with 125 representatives # comparing sequences from 189446 to 189766 .................. ---------- 196 remaining sequences to the next cycle ---------- new table with 124 representatives # comparing sequences from 189570 to 189886 ................... ---------- 193 remaining sequences to the next cycle ---------- new table with 122 representatives # comparing sequences from 189693 to 190005 .................... ---------- 203 remaining sequences to the next cycle ---------- new table with 108 representatives # comparing sequences from 189802 to 190110 .................. ---------- 204 remaining sequences to the next cycle ---------- new table with 104 representatives # comparing sequences from 189906 to 190210 ................... .......... 190000 finished 180732 clusters ---------- 202 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 190008 to 190309 .................. ---------- 178 remaining sequences to the next cycle ---------- new table with 118 representatives # comparing sequences from 190131 to 190428 .................... ---------- 192 remaining sequences to the next cycle ---------- new table with 102 representatives # comparing sequences from 190236 to 190529 ................... ---------- 177 remaining sequences to the next cycle ---------- new table with 115 representatives # comparing sequences from 190352 to 190641 ................... ---------- 188 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 190453 to 190739 ................... ---------- 186 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 190553 to 190835 ................... ---------- 182 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 190653 to 190932 ................... ---------- 179 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 190753 to 191028 ................... ---------- 168 remaining sequences to the next cycle ---------- new table with 107 representatives # comparing sequences from 190860 to 191132 ................... ---------- 169 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 190963 to 191231 ................... ---------- 166 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 191065 to 191329 ................... ---------- 160 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 191169 to 191430 ................... ---------- 160 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 191270 to 191527 ................... ---------- 153 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 191374 to 191628 ................... ---------- 154 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 191474 to 191724 ................... ---------- 150 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 191574 to 191821 ................... ---------- 146 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 191675 to 191918 .................. ---------- 142 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 191776 to 192016 ................... ---------- 140 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 191876 to 192112 .................... ---------- 132 remaining sequences to the next cycle ---------- new table with 104 representatives # comparing sequences from 191980 to 192213 .................... ---------- 131 remaining sequences to the next cycle ---------- new table with 102 representatives # comparing sequences from 192082 to 192311 ................... ---------- 129 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 192182 to 192408 .................. ---------- 126 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 192282 to 192504 .................. ---------- 120 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 192384 to 192603 ................... ---------- 115 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 192488 to 192703 .................... ---------- 115 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 192588 to 192800 .................... ---------- 112 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 192688 to 192896 .................. ---------- 107 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 192789 to 192994 .................. ---------- 104 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 192890 to 193092 .................. ---------- 102 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 192990 to 193188 ..................... ---------- 98 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 193090 to 193285 .................... ---------- 95 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 193190 to 193381 .................... ---------- 91 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 193290 to 193478 ................... ---------- 88 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 193390 to 193574 ................... ---------- 84 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 193490 to 193671 ................... ---------- 81 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 193590 to 193767 .................... ---------- 75 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 193692 to 193866 ................... ---------- 74 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 193792 to 193962 .................. ---------- 69 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 193893 to 194060 ................... ---------- 64 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 193996 to 194159 .................. ---------- 62 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 194097 to 194257 .................. ---------- 58 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 194199 to 194355 .................... ---------- 56 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 194299 to 194452 ................... ---------- 52 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 194400 to 194549 ................... ---------- 49 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 194500 to 194646 .................. ---------- 45 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 194601 to 194744 ................. ---------- 42 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 194702 to 194841 .................... ---------- 39 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 194802 to 194938 .................... ---------- 35 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 194903 to 195035 .................... ---------- 28 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 195007 to 195136 .................. ---------- 27 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 195109 to 195234 ................. ---------- 22 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 195212 to 195333 ................ ---------- 20 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 195313 to 195431 .................. ---------- 15 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 195416 to 195530 ................... ---------- 12 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 195518 to 195629 .................. ---------- 11 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 195618 to 195725 .................. ---------- 7 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 195718 to 195822 ................. ---------- 4 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 195818 to 195919 ................. ---------- 1 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 195918 to 196015 ....................---------- new table with 96 representatives # comparing sequences from 196015 to 196109 ...................---------- new table with 90 representatives # comparing sequences from 196109 to 196200 .................---------- new table with 88 representatives # comparing sequences from 196200 to 196287 ..................---------- new table with 86 representatives # comparing sequences from 196287 to 196371 .................---------- new table with 83 representatives # comparing sequences from 196371 to 196452 ................---------- new table with 80 representatives # comparing sequences from 196452 to 196531 ....................---------- new table with 77 representatives # comparing sequences from 196531 to 196607 ...................---------- new table with 76 representatives # comparing sequences from 196607 to 196680 ..................---------- new table with 70 representatives # comparing sequences from 196680 to 196751 ..................---------- new table with 71 representatives # comparing sequences from 196751 to 196819 .................---------- new table with 68 representatives # comparing sequences from 196819 to 196885 .................---------- new table with 64 representatives # comparing sequences from 196885 to 196949 ................---------- new table with 64 representatives # comparing sequences from 196949 to 197011 ................---------- new table with 62 representatives # comparing sequences from 197011 to 197070 ...................---------- new table with 59 representatives # comparing sequences from 197070 to 197127 ...................---------- new table with 57 representatives # comparing sequences from 197127 to 197182 ...................---------- new table with 55 representatives # comparing sequences from 197182 to 197236 ..................---------- new table with 54 representatives # comparing sequences from 197236 to 197288 .................---------- new table with 52 representatives # comparing sequences from 197288 to 197338 .................---------- new table with 50 representatives # comparing sequences from 197338 to 197386 ................---------- new table with 48 representatives # comparing sequences from 197386 to 197432 ...............---------- new table with 46 representatives # comparing sequences from 197432 to 197477 ..............---------- new table with 43 representatives # comparing sequences from 197477 to 197520 ..............---------- new table with 42 representatives # comparing sequences from 197520 to 197562 .............---------- new table with 41 representatives # comparing sequences from 197562 to 197602 ..............---------- new table with 39 representatives # comparing sequences from 197602 to 197641 ...................---------- new table with 38 representatives # comparing sequences from 197641 to 197679 ...................---------- new table with 38 representatives # comparing sequences from 197679 to 197715 .................---------- new table with 34 representatives # comparing sequences from 197715 to 197750 .................---------- new table with 35 representatives # comparing sequences from 197750 to 198748 .....................---------- new table with 984 representatives 198748 finished 189378 clusters Approximated maximum memory consumption: 651M writing new database writing clustering information program completed ! Total CPU time 1070.40 ================================================================ Program: CD-HIT, V4.8.1 (+OpenMP), Jul 24 2019, 13:13:52 Command: /gscratch/srlab/programs/cd-hit-v4.8.1-2019-0228/cd-hit-est -o heart.cdhit -c 0.98 -i /gscratch/srlab/sam/data/P_generosa/transcriptomes/heart/Trinity.fasta -p 1 -d 0 -b 3 -T 27 -M 0 Started: Mon Jul 29 12:12:16 2019 ================================================================ Output ---------------------------------------------------------------- total seq: 300280 longest and shortest : 38878 and 179 Total letters: 274251211 Sequences have been sorted Approximated minimal memory consumption: Sequence : 315M Buffer : 27 X 18M = 503M Table : 2 X 21M = 43M Miscellaneous : 7M Total : 870M Table limit with the given memory limit: Max number of representatives: 458974 Max number of word counting entries: 107679834 # comparing sequences from 0 to 1297 .---------- new table with 893 representatives # comparing sequences from 1297 to 11606 ..................... ---------- 9384 remaining sequences to the next cycle ---------- new table with 654 representatives # comparing sequences from 2222 to 12499 .................... ---------- 9506 remaining sequences to the next cycle ---------- new table with 555 representatives # comparing sequences from 2993 to 13244 ..................... ---------- 9272 remaining sequences to the next cycle ---------- new table with 705 representatives # comparing sequences from 3972 to 14189 ...................... ---------- 9180 remaining sequences to the next cycle ---------- new table with 779 representatives # comparing sequences from 5009 to 15190 .................... ---------- 8939 remaining sequences to the next cycle ---------- new table with 939 representatives # comparing sequences from 6251 to 16389 .................... ---------- 9030 remaining sequences to the next cycle ---------- new table with 814 representatives # comparing sequences from 7359 to 17459 ..................... ---------- 8727 remaining sequences to the next cycle ---------- new table with 1042 representatives # comparing sequences from 8732 to 18785 ..................... .......... 10000 finished 7359 clusters ---------- 8719 remaining sequences to the next cycle ---------- new table with 1026 representatives # comparing sequences from 10066 to 20073 ..................... ---------- 8288 remaining sequences to the next cycle ---------- new table with 1311 representatives # comparing sequences from 11785 to 21733 ..................... ---------- 8342 remaining sequences to the next cycle ---------- new table with 1240 representatives # comparing sequences from 13391 to 23283 ................... ---------- 8353 remaining sequences to the next cycle ---------- new table with 1201 representatives # comparing sequences from 14930 to 24769 ...................... ---------- 8189 remaining sequences to the next cycle ---------- new table with 1306 representatives # comparing sequences from 16580 to 26362 ..................... ---------- 7760 remaining sequences to the next cycle ---------- new table with 1626 representatives # comparing sequences from 18602 to 28315 ..................... .......... 20000 finished 15235 clusters ---------- 7768 remaining sequences to the next cycle ---------- new table with 1577 representatives # comparing sequences from 20547 to 30192 ..................... ---------- 7364 remaining sequences to the next cycle ---------- new table with 1844 representatives # comparing sequences from 22828 to 32395 ...................... ---------- 7454 remaining sequences to the next cycle ---------- new table with 1714 representatives # comparing sequences from 24941 to 34435 ...................... ---------- 7067 remaining sequences to the next cycle ---------- new table with 2015 representatives # comparing sequences from 27368 to 36778 .................... ---------- 7198 remaining sequences to the next cycle ---------- new table with 1850 representatives # comparing sequences from 29580 to 38914 .................... .......... 30000 finished 23449 clusters .. ---------- 6750 remaining sequences to the next cycle ---------- new table with 2163 representatives # comparing sequences from 32164 to 41409 ................... ---------- 6882 remaining sequences to the next cycle ---------- new table with 1996 representatives # comparing sequences from 34527 to 43690 ....................... ---------- 6407 remaining sequences to the next cycle ---------- new table with 2371 representatives # comparing sequences from 37283 to 46351 ...................... ---------- 6541 remaining sequences to the next cycle ---------- new table with 2153 representatives # comparing sequences from 39810 to 48791 .................... .......... 40000 finished 31949 clusters .. 100.0% ---------- 6139 remaining sequences to the next cycle ---------- new table with 2475 representatives # comparing sequences from 42652 to 51535 ...................... ---------- 6328 remaining sequences to the next cycle ---------- new table with 2239 representatives # comparing sequences from 45207 to 54002 ....................... ---------- 5750 remaining sequences to the next cycle ---------- new table with 2687 representatives # comparing sequences from 48252 to 56942 ..................... .......... 50000 finished 40730 clusters ---------- 5971 remaining sequences to the next cycle ---------- new table with 2423 representatives # comparing sequences from 50971 to 59567 ........................ ---------- 5477 remaining sequences to the next cycle ---------- new table with 2756 representatives # comparing sequences from 54090 to 62579 ...................... ---------- 5795 remaining sequences to the next cycle ---------- new table with 2404 representatives # comparing sequences from 56784 to 65180 ..................... ---------- 5578 remaining sequences to the next cycle ---------- new table with 2538 representatives # comparing sequences from 59602 to 67901 ..................... .......... 60000 finished 49662 clusters . ---------- 5599 remaining sequences to the next cycle ---------- new table with 2428 representatives # comparing sequences from 62302 to 70508 ...................... 100.0% ---------- 5731 remaining sequences to the next cycle ---------- new table with 2263 representatives # comparing sequences from 64777 to 72897 ....................... ---------- 5466 remaining sequences to the next cycle ---------- new table with 2409 representatives # comparing sequences from 67431 to 75460 ...................... ---------- 5535 remaining sequences to the next cycle ---------- new table with 2293 representatives # comparing sequences from 69925 to 77868 .................... .......... 70000 finished 58757 clusters . ---------- 5299 remaining sequences to the next cycle ---------- new table with 2444 representatives # comparing sequences from 72569 to 80421 ...................... ---------- 5058 remaining sequences to the next cycle ---------- new table with 2559 representatives # comparing sequences from 75363 to 83118 ...................... ---------- 4917 remaining sequences to the next cycle ---------- new table with 2639 representatives # comparing sequences from 78201 to 85858 ...................... .......... 80000 finished 67990 clusters ---------- 4963 remaining sequences to the next cycle ---------- new table with 2484 representatives # comparing sequences from 80895 to 88460 ....................... ---------- 4755 remaining sequences to the next cycle ---------- new table with 2603 representatives # comparing sequences from 83705 to 91173 ..................... ---------- 4383 remaining sequences to the next cycle ---------- new table with 2866 representatives # comparing sequences from 86790 to 94151 .................... ---------- 4355 remaining sequences to the next cycle ---------- new table with 2801 representatives # comparing sequences from 89796 to 97054 ..................... .......... 90000 finished 77267 clusters ... ---------- 3759 remaining sequences to the next cycle ---------- new table with 3255 representatives # comparing sequences from 93295 to 100432 ..................... 100.0% ---------- 3914 remaining sequences to the next cycle ---------- new table with 3000 representatives # comparing sequences from 96518 to 103544 ....................... ---------- 3776 remaining sequences to the next cycle ---------- new table with 3028 representatives # comparing sequences from 99768 to 106682 .................... .......... 100000 finished 86589 clusters .. ---------- 3733 remaining sequences to the next cycle ---------- new table with 3005 representatives # comparing sequences from 102949 to 109753 ..................... ---------- 4038 remaining sequences to the next cycle ---------- new table with 2627 representatives # comparing sequences from 105715 to 112424 ....................... ---------- 3704 remaining sequences to the next cycle ---------- new table with 2841 representatives # comparing sequences from 108720 to 115325 ..................... .......... 110000 finished 96052 clusters .. ---------- 3016 remaining sequences to the next cycle ---------- new table with 3385 representatives # comparing sequences from 112309 to 118790 ....................... ---------- 3216 remaining sequences to the next cycle ---------- new table with 3112 representatives # comparing sequences from 115574 to 121943 ........................ ---------- 2556 remaining sequences to the next cycle ---------- new table with 3607 representatives # comparing sequences from 119387 to 125624 .................... .......... 120000 finished 105524 clusters . ---------- 2797 remaining sequences to the next cycle ---------- new table with 3261 representatives # comparing sequences from 122827 to 128946 ....................... ---------- 3004 remaining sequences to the next cycle ---------- new table with 2978 representatives # comparing sequences from 125942 to 131953 ........................ ---------- 2880 remaining sequences to the next cycle ---------- new table with 2999 representatives # comparing sequences from 129073 to 134976 .................. .......... 130000 finished 115058 clusters .. ---------- 2215 remaining sequences to the next cycle ---------- new table with 3492 representatives # comparing sequences from 132761 to 138537 ........................ ---------- 2455 remaining sequences to the next cycle ---------- new table with 3182 representatives # comparing sequences from 136082 to 141744 ....................... 100.0% ---------- 1983 remaining sequences to the next cycle ---------- new table with 3518 representatives # comparing sequences from 139761 to 145296 ..................... .......... 140000 finished 124602 clusters .. ---------- 2447 remaining sequences to the next cycle ---------- new table with 2948 representatives # comparing sequences from 142849 to 148277 ...................... ---------- 2491 remaining sequences to the next cycle ---------- new table with 2794 representatives # comparing sequences from 145786 to 151113 ...................... ---------- 2584 remaining sequences to the next cycle ---------- new table with 2633 representatives # comparing sequences from 148529 to 153761 ...................... .......... 150000 finished 134154 clusters . ---------- 2523 remaining sequences to the next cycle ---------- new table with 2577 representatives # comparing sequences from 151238 to 156377 ..................... ---------- 2438 remaining sequences to the next cycle ---------- new table with 2575 representatives # comparing sequences from 153939 to 158985 ....................... ---------- 2371 remaining sequences to the next cycle ---------- new table with 2576 representatives # comparing sequences from 156614 to 161568 ....................... ---------- 2037 remaining sequences to the next cycle ---------- new table with 2777 representatives # comparing sequences from 159531 to 164384 .................... .......... 160000 finished 143706 clusters .. ---------- 2202 remaining sequences to the next cycle ---------- new table with 2530 representatives # comparing sequences from 162182 to 166944 ..................... ---------- 2062 remaining sequences to the next cycle ---------- new table with 2576 representatives # comparing sequences from 164882 to 169550 ...................... ---------- 2272 remaining sequences to the next cycle ---------- new table with 2283 representatives # comparing sequences from 167278 to 171864 ...................... ---------- 2282 remaining sequences to the next cycle ---------- new table with 2218 representatives # comparing sequences from 169582 to 174088 .................... .......... 170000 finished 153255 clusters . ---------- 2097 remaining sequences to the next cycle ---------- new table with 2302 representatives # comparing sequences from 171991 to 176414 ...................... 100.0% ---------- 1756 remaining sequences to the next cycle ---------- new table with 2557 representatives # comparing sequences from 174658 to 178989 ....................... ---------- 1377 remaining sequences to the next cycle ---------- new table with 2808 representatives # comparing sequences from 177612 to 181841 ....................... .......... 180000 finished 162813 clusters ---------- 1446 remaining sequences to the next cycle ---------- new table with 2665 representatives # comparing sequences from 180395 to 184528 ...................... ---------- 1150 remaining sequences to the next cycle ---------- new table with 2856 representatives # comparing sequences from 183378 to 187409 ...................... ---------- 1788 remaining sequences to the next cycle ---------- new table with 2143 representatives # comparing sequences from 185621 to 189574 ...................... ---------- 1418 remaining sequences to the next cycle ---------- new table with 2414 representatives # comparing sequences from 188156 to 192022 ...................... .......... 190000 finished 172363 clusters ---------- 1583 remaining sequences to the next cycle ---------- new table with 2183 representatives # comparing sequences from 190439 to 194226 ...................... ---------- 1729 remaining sequences to the next cycle ---------- new table with 1989 representatives # comparing sequences from 192497 to 196213 ...................... ---------- 1557 remaining sequences to the next cycle ---------- new table with 2076 representatives # comparing sequences from 194656 to 198298 .................... ---------- 1627 remaining sequences to the next cycle ---------- new table with 1946 representatives # comparing sequences from 196671 to 200243 ...................... 100.0% ---------- 1554 remaining sequences to the next cycle ---------- new table with 1925 representatives # comparing sequences from 198689 to 202192 ..................... ---------- 1179 remaining sequences to the next cycle ---------- new table with 2225 representatives # comparing sequences from 201013 to 204436 .................... ---------- 1575 remaining sequences to the next cycle ---------- new table with 1798 representatives # comparing sequences from 202861 to 206220 ....................... ---------- 1119 remaining sequences to the next cycle ---------- new table with 2132 representatives # comparing sequences from 205101 to 208383 ..................... ---------- 1200 remaining sequences to the next cycle ---------- new table with 1997 representatives # comparing sequences from 207183 to 210393 ..................... ---------- 992 remaining sequences to the next cycle ---------- new table with 2133 representatives # comparing sequences from 209401 to 212534 ................... .......... 210000 finished 191588 clusters . ---------- 1382 remaining sequences to the next cycle ---------- new table with 1681 representatives # comparing sequences from 211152 to 214225 ..................... ---------- 1107 remaining sequences to the next cycle ---------- new table with 1892 representatives # comparing sequences from 213118 to 216123 ..................... ---------- 1143 remaining sequences to the next cycle ---------- new table with 1783 representatives # comparing sequences from 214980 to 217921 ...................... 100.0% ---------- 1091 remaining sequences to the next cycle ---------- new table with 1780 representatives # comparing sequences from 216830 to 219707 ...................... ---------- 1255 remaining sequences to the next cycle ---------- new table with 1551 representatives # comparing sequences from 218452 to 221273 ...................... .......... 220000 finished 201175 clusters ---------- 953 remaining sequences to the next cycle ---------- new table with 1793 representatives # comparing sequences from 220320 to 223077 ..................... ---------- 1194 remaining sequences to the next cycle ---------- new table with 1511 representatives # comparing sequences from 221883 to 224586 ...................... ---------- 1259 remaining sequences to the next cycle ---------- new table with 1396 representatives # comparing sequences from 223327 to 225980 ................... ---------- 1262 remaining sequences to the next cycle ---------- new table with 1338 representatives # comparing sequences from 224718 to 227323 ..................... ---------- 1294 remaining sequences to the next cycle ---------- new table with 1259 representatives # comparing sequences from 226029 to 228589 ................... ---------- 1273 remaining sequences to the next cycle ---------- new table with 1244 representatives # comparing sequences from 227316 to 229832 ................... 100.0% ---------- 1288 remaining sequences to the next cycle ---------- new table with 1191 representatives # comparing sequences from 228544 to 231017 .................... ---------- 1252 remaining sequences to the next cycle ---------- new table with 1184 representatives # comparing sequences from 229765 to 232196 ..................... .......... 230000 finished 210845 clusters ---------- 1273 remaining sequences to the next cycle ---------- new table with 1122 representatives # comparing sequences from 230923 to 233314 ...................... ---------- 1225 remaining sequences to the next cycle ---------- new table with 1125 representatives # comparing sequences from 232089 to 234440 .................... 100.0% ---------- 1229 remaining sequences to the next cycle ---------- new table with 1088 representatives # comparing sequences from 233211 to 235523 .................... ---------- 1396 remaining sequences to the next cycle ---------- new table with 877 representatives # comparing sequences from 234127 to 236408 .................... ---------- 1278 remaining sequences to the next cycle ---------- new table with 969 representatives # comparing sequences from 235130 to 237376 ..................... ---------- 1218 remaining sequences to the next cycle ---------- new table with 1004 representatives # comparing sequences from 236158 to 238369 .................... 100.0% ---------- 1183 remaining sequences to the next cycle ---------- new table with 996 representatives # comparing sequences from 237186 to 239361 .................... ---------- 1186 remaining sequences to the next cycle ---------- new table with 969 representatives # comparing sequences from 238175 to 240316 ..................... ---------- 898 remaining sequences to the next cycle ---------- new table with 1206 representatives # comparing sequences from 239418 to 241516 ..................... .......... 240000 finished 220535 clusters ---------- 1040 remaining sequences to the next cycle ---------- new table with 1023 representatives # comparing sequences from 240476 to 242538 .................... 100.0% ---------- 827 remaining sequences to the next cycle ---------- new table with 1188 representatives # comparing sequences from 241711 to 243730 .................... ---------- 1027 remaining sequences to the next cycle ---------- new table with 955 representatives # comparing sequences from 242703 to 244688 .................... ---------- 828 remaining sequences to the next cycle ---------- new table with 1128 representatives # comparing sequences from 243860 to 245805 ..................... ---------- 839 remaining sequences to the next cycle ---------- new table with 1076 representatives # comparing sequences from 244966 to 246873 ...................... ---------- 734 remaining sequences to the next cycle ---------- new table with 1143 representatives # comparing sequences from 246139 to 248005 ..................... ---------- 675 remaining sequences to the next cycle ---------- new table with 1159 representatives # comparing sequences from 247330 to 249155 .................... ---------- 618 remaining sequences to the next cycle ---------- new table with 1167 representatives # comparing sequences from 248537 to 250321 ..................... ---------- 1019 remaining sequences to the next cycle ---------- new table with 745 representatives # comparing sequences from 249302 to 251059 ..................... .......... 250000 finished 230228 clusters ---------- 997 remaining sequences to the next cycle ---------- new table with 736 representatives # comparing sequences from 250062 to 251793 .................... ---------- 863 remaining sequences to the next cycle ---------- new table with 850 representatives # comparing sequences from 250930 to 252631 ..................... ---------- 938 remaining sequences to the next cycle ---------- new table with 744 representatives # comparing sequences from 251693 to 253368 .................... ---------- 827 remaining sequences to the next cycle ---------- new table with 831 representatives # comparing sequences from 252541 to 254187 ..................... ---------- 901 remaining sequences to the next cycle ---------- new table with 715 representatives # comparing sequences from 253286 to 254906 ..................... 100.0% ---------- 807 remaining sequences to the next cycle ---------- new table with 792 representatives # comparing sequences from 254099 to 255691 .................... ---------- 886 remaining sequences to the next cycle ---------- new table with 684 representatives # comparing sequences from 254805 to 256373 .................... ---------- 760 remaining sequences to the next cycle ---------- new table with 785 representatives # comparing sequences from 255613 to 257153 ................ ---------- 1229 remaining sequences to the next cycle ---------- new table with 307 representatives # comparing sequences from 255924 to 257453 ..................... ---------- 1001 remaining sequences to the next cycle ---------- new table with 512 representatives # comparing sequences from 256452 to 257963 .................... ---------- 973 remaining sequences to the next cycle ---------- new table with 525 representatives # comparing sequences from 256990 to 258482 ..................... ---------- 907 remaining sequences to the next cycle ---------- new table with 574 representatives # comparing sequences from 257575 to 259047 .................... ---------- 709 remaining sequences to the next cycle ---------- new table with 746 representatives # comparing sequences from 258338 to 259784 .................... ---------- 809 remaining sequences to the next cycle ---------- new table with 625 representatives # comparing sequences from 258975 to 260399 ..................... ---------- 653 remaining sequences to the next cycle ---------- new table with 756 representatives # comparing sequences from 259746 to 261143 .................... .......... 260000 finished 239985 clusters ---------- 786 remaining sequences to the next cycle ---------- new table with 600 representatives # comparing sequences from 260357 to 261733 .................... ---------- 844 remaining sequences to the next cycle ---------- new table with 521 representatives # comparing sequences from 260889 to 262247 ..................... ---------- 825 remaining sequences to the next cycle ---------- new table with 521 representatives # comparing sequences from 261422 to 262761 .................... ---------- 830 remaining sequences to the next cycle ---------- new table with 503 representatives # comparing sequences from 261931 to 263253 .................... 100.0% ---------- 800 remaining sequences to the next cycle ---------- new table with 510 representatives # comparing sequences from 262453 to 263757 .................... ---------- 633 remaining sequences to the next cycle ---------- new table with 651 representatives # comparing sequences from 263124 to 264405 ............... ---------- 774 remaining sequences to the next cycle ---------- new table with 495 representatives # comparing sequences from 263631 to 264894 .................... ---------- 622 remaining sequences to the next cycle ---------- new table with 619 representatives # comparing sequences from 264272 to 265513 .................... ---------- 806 remaining sequences to the next cycle ---------- new table with 427 representatives # comparing sequences from 264707 to 265933 .................... ---------- 632 remaining sequences to the next cycle ---------- new table with 578 representatives # comparing sequences from 265301 to 266507 ................... ---------- 735 remaining sequences to the next cycle ---------- new table with 457 representatives # comparing sequences from 265772 to 266961 ..................... ---------- 601 remaining sequences to the next cycle ---------- new table with 572 representatives # comparing sequences from 266360 to 267529 .................. ---------- 684 remaining sequences to the next cycle ---------- new table with 473 representatives # comparing sequences from 266845 to 267997 ..................... ---------- 715 remaining sequences to the next cycle ---------- new table with 428 representatives # comparing sequences from 267282 to 268419 ................... 100.0% ---------- 706 remaining sequences to the next cycle ---------- new table with 413 representatives # comparing sequences from 267713 to 268836 .................... 100.0% ---------- 706 remaining sequences to the next cycle ---------- new table with 403 representatives # comparing sequences from 268130 to 269238 ................... ---------- 617 remaining sequences to the next cycle ---------- new table with 472 representatives # comparing sequences from 268621 to 269712 .................... ---------- 551 remaining sequences to the next cycle ---------- new table with 536 representatives # comparing sequences from 269161 to 270234 .................... ---------- 633 remaining sequences to the next cycle ---------- new table with 425 representatives # comparing sequences from 269601 to 270658 ..................... .......... 270000 finished 249731 clusters ---------- 646 remaining sequences to the next cycle ---------- new table with 403 representatives # comparing sequences from 270012 to 271055 .................... ---------- 663 remaining sequences to the next cycle ---------- new table with 371 representatives # comparing sequences from 270392 to 271422 .................... ---------- 536 remaining sequences to the next cycle ---------- new table with 487 representatives # comparing sequences from 270886 to 271899 .................... ---------- 618 remaining sequences to the next cycle ---------- new table with 391 representatives # comparing sequences from 271281 to 272280 .................... ---------- 638 remaining sequences to the next cycle ---------- new table with 358 representatives # comparing sequences from 271642 to 272629 .................... ---------- 629 remaining sequences to the next cycle ---------- new table with 347 representatives # comparing sequences from 272000 to 272975 ................... ---------- 512 remaining sequences to the next cycle ---------- new table with 452 representatives # comparing sequences from 272463 to 273422 .................... ---------- 587 remaining sequences to the next cycle ---------- new table with 362 representatives # comparing sequences from 272835 to 273781 ................... ---------- 610 remaining sequences to the next cycle ---------- new table with 333 representatives # comparing sequences from 273171 to 274105 .................... ---------- 522 remaining sequences to the next cycle ---------- new table with 403 representatives # comparing sequences from 273583 to 274503 ..................... ---------- 470 remaining sequences to the next cycle ---------- new table with 442 representatives # comparing sequences from 274033 to 274938 ................... ---------- 554 remaining sequences to the next cycle ---------- new table with 341 representatives # comparing sequences from 274384 to 275276 .................... ---------- 460 remaining sequences to the next cycle ---------- new table with 420 representatives # comparing sequences from 274816 to 275694 ..................... ---------- 554 remaining sequences to the next cycle ---------- new table with 320 representatives # comparing sequences from 275140 to 276006 ................... ---------- 551 remaining sequences to the next cycle ---------- new table with 306 representatives # comparing sequences from 275455 to 276311 .................... ---------- 719 remaining sequences to the next cycle ---------- new table with 136 representatives # comparing sequences from 275592 to 276443 ................... ---------- 594 remaining sequences to the next cycle ---------- new table with 254 representatives # comparing sequences from 275849 to 276691 .................... ---------- 630 remaining sequences to the next cycle ---------- new table with 207 representatives # comparing sequences from 276061 to 276896 .................... ---------- 552 remaining sequences to the next cycle ---------- new table with 272 representatives # comparing sequences from 276344 to 277169 ................... ---------- 655 remaining sequences to the next cycle ---------- new table with 168 representatives # comparing sequences from 276514 to 277333 .................... ---------- 485 remaining sequences to the next cycle ---------- new table with 328 representatives # comparing sequences from 276848 to 277656 ..................... ---------- 520 remaining sequences to the next cycle ---------- new table with 282 representatives # comparing sequences from 277136 to 277934 .................... ---------- 524 remaining sequences to the next cycle ---------- new table with 272 representatives # comparing sequences from 277410 to 278198 ................... ---------- 510 remaining sequences to the next cycle ---------- new table with 270 representatives # comparing sequences from 277688 to 278467 .................... ---------- 505 remaining sequences to the next cycle ---------- new table with 265 representatives # comparing sequences from 277962 to 278731 .................... ---------- 448 remaining sequences to the next cycle ---------- new table with 318 representatives # comparing sequences from 278283 to 279041 .................... ---------- 483 remaining sequences to the next cycle ---------- new table with 267 representatives # comparing sequences from 278558 to 279307 .................... ---------- 428 remaining sequences to the next cycle ---------- new table with 314 representatives # comparing sequences from 278879 to 279616 ..................... ---------- 478 remaining sequences to the next cycle ---------- new table with 257 representatives # comparing sequences from 279138 to 279867 ................... 100.0% ---------- 425 remaining sequences to the next cycle ---------- new table with 298 representatives # comparing sequences from 279442 to 280160 .................... ---------- 461 remaining sequences to the next cycle ---------- new table with 251 representatives # comparing sequences from 279699 to 280408 .................... ---------- 415 remaining sequences to the next cycle ---------- new table with 291 representatives # comparing sequences from 279993 to 280692 ..................... .......... 280000 finished 259533 clusters ---------- 523 remaining sequences to the next cycle ---------- new table with 171 representatives # comparing sequences from 280169 to 280862 .................... ---------- 462 remaining sequences to the next cycle ---------- new table with 224 representatives # comparing sequences from 280400 to 281085 ................... ---------- 478 remaining sequences to the next cycle ---------- new table with 202 representatives # comparing sequences from 280607 to 281285 .................... ---------- 461 remaining sequences to the next cycle ---------- new table with 216 representatives # comparing sequences from 280824 to 281494 ..................... ---------- 469 remaining sequences to the next cycle ---------- new table with 195 representatives # comparing sequences from 281025 to 281688 ................... ---------- 391 remaining sequences to the next cycle ---------- new table with 263 representatives # comparing sequences from 281297 to 281951 ................... ---------- 370 remaining sequences to the next cycle ---------- new table with 276 representatives # comparing sequences from 281581 to 282225 ................... ---------- 370 remaining sequences to the next cycle ---------- new table with 270 representatives # comparing sequences from 281855 to 282490 .................... ---------- 417 remaining sequences to the next cycle ---------- new table with 215 representatives # comparing sequences from 282073 to 282700 .................... ---------- 368 remaining sequences to the next cycle ---------- new table with 254 representatives # comparing sequences from 282332 to 282950 .................... ---------- 407 remaining sequences to the next cycle ---------- new table with 207 representatives # comparing sequences from 282543 to 283154 ................... ---------- 352 remaining sequences to the next cycle ---------- new table with 248 representatives # comparing sequences from 282802 to 283404 ..................... ---------- 335 remaining sequences to the next cycle ---------- new table with 263 representatives # comparing sequences from 283069 to 283662 .................... ---------- 382 remaining sequences to the next cycle ---------- new table with 205 representatives # comparing sequences from 283280 to 283866 .................... ---------- 396 remaining sequences to the next cycle ---------- new table with 190 representatives # comparing sequences from 283470 to 284049 ................ ---------- 378 remaining sequences to the next cycle ---------- new table with 194 representatives # comparing sequences from 283671 to 284243 ................. ---------- 350 remaining sequences to the next cycle ---------- new table with 215 representatives # comparing sequences from 283893 to 284458 ................. ---------- 368 remaining sequences to the next cycle ---------- new table with 191 representatives # comparing sequences from 284090 to 284648 ................... ---------- 322 remaining sequences to the next cycle ---------- new table with 235 representatives # comparing sequences from 284326 to 284876 .................... ---------- 315 remaining sequences to the next cycle ---------- new table with 228 representatives # comparing sequences from 284561 to 285103 .................. ---------- 297 remaining sequences to the next cycle ---------- new table with 240 representatives # comparing sequences from 284806 to 285339 ..................... ---------- 292 remaining sequences to the next cycle ---------- new table with 233 representatives # comparing sequences from 285047 to 285572 ................... ---------- 378 remaining sequences to the next cycle ---------- new table with 147 representatives # comparing sequences from 285194 to 285714 ................... 99.6% ---------- 318 remaining sequences to the next cycle ---------- new table with 200 representatives # comparing sequences from 285396 to 285909 ................... ---------- 303 remaining sequences to the next cycle ---------- new table with 202 representatives # comparing sequences from 285606 to 286112 .................... ---------- 291 remaining sequences to the next cycle ---------- new table with 212 representatives # comparing sequences from 285821 to 286319 .................... ---------- 321 remaining sequences to the next cycle ---------- new table with 173 representatives # comparing sequences from 285998 to 286490 ..................... ---------- 322 remaining sequences to the next cycle ---------- new table with 167 representatives # comparing sequences from 286168 to 286654 .................... 100.0% ---------- 277 remaining sequences to the next cycle ---------- new table with 203 representatives # comparing sequences from 286377 to 286856 .................... 100.0% ---------- 271 remaining sequences to the next cycle ---------- new table with 203 representatives # comparing sequences from 286585 to 287057 ................... ---------- 262 remaining sequences to the next cycle ---------- new table with 206 representatives # comparing sequences from 286795 to 287260 .................... ---------- 289 remaining sequences to the next cycle ---------- new table with 176 representatives # comparing sequences from 286971 to 287429 .................... ---------- 260 remaining sequences to the next cycle ---------- new table with 191 representatives # comparing sequences from 287169 to 287621 .................... ---------- 266 remaining sequences to the next cycle ---------- new table with 185 representatives # comparing sequences from 287355 to 287800 .................... 100.0% ---------- 245 remaining sequences to the next cycle ---------- new table with 190 representatives # comparing sequences from 287555 to 287993 .................... ---------- 281 remaining sequences to the next cycle ---------- new table with 154 representatives # comparing sequences from 287712 to 288145 .................... ---------- 294 remaining sequences to the next cycle ---------- new table with 138 representatives # comparing sequences from 287851 to 288279 ................... ---------- 285 remaining sequences to the next cycle ---------- new table with 139 representatives # comparing sequences from 287994 to 288417 ................... ---------- 282 remaining sequences to the next cycle ---------- new table with 138 representatives # comparing sequences from 288135 to 288553 .................. ---------- 286 remaining sequences to the next cycle ---------- new table with 125 representatives # comparing sequences from 288267 to 288681 ................... ---------- 274 remaining sequences to the next cycle ---------- new table with 138 representatives # comparing sequences from 288407 to 288816 ................... ---------- 294 remaining sequences to the next cycle ---------- new table with 109 representatives # comparing sequences from 288522 to 288927 ................... ---------- 276 remaining sequences to the next cycle ---------- new table with 127 representatives # comparing sequences from 288651 to 289052 ................... ---------- 276 remaining sequences to the next cycle ---------- new table with 125 representatives # comparing sequences from 288776 to 289172 .................... ---------- 246 remaining sequences to the next cycle ---------- new table with 146 representatives # comparing sequences from 288926 to 289317 .................... 100.0% ---------- 257 remaining sequences to the next cycle ---------- new table with 133 representatives # comparing sequences from 289060 to 289446 ................... ---------- 222 remaining sequences to the next cycle ---------- new table with 159 representatives # comparing sequences from 289224 to 289605 .................. ---------- 238 remaining sequences to the next cycle ---------- new table with 140 representatives # comparing sequences from 289367 to 289743 ................... 100.0% ---------- 218 remaining sequences to the next cycle ---------- new table with 156 representatives # comparing sequences from 289525 to 289895 .................. ---------- 255 remaining sequences to the next cycle ---------- new table with 115 representatives # comparing sequences from 289640 to 290006 .................. ---------- 245 remaining sequences to the next cycle ---------- new table with 117 representatives # comparing sequences from 289761 to 290123 .................. ---------- 241 remaining sequences to the next cycle ---------- new table with 117 representatives # comparing sequences from 289882 to 290240 .................... .......... 290000 finished 269308 clusters ---------- 239 remaining sequences to the next cycle ---------- new table with 117 representatives # comparing sequences from 290001 to 290355 .................. ---------- 226 remaining sequences to the next cycle ---------- new table with 125 representatives # comparing sequences from 290129 to 290479 .................. ---------- 200 remaining sequences to the next cycle ---------- new table with 145 representatives # comparing sequences from 290279 to 290623 .................. ---------- 232 remaining sequences to the next cycle ---------- new table with 111 representatives # comparing sequences from 290391 to 290732 ................... 100.0% ---------- 234 remaining sequences to the next cycle ---------- new table with 107 representatives # comparing sequences from 290498 to 290835 .................. ---------- 220 remaining sequences to the next cycle ---------- new table with 112 representatives # comparing sequences from 290615 to 290948 .................... 100.0% ---------- 197 remaining sequences to the next cycle ---------- new table with 133 representatives # comparing sequences from 290751 to 291079 .................... ---------- 216 remaining sequences to the next cycle ---------- new table with 109 representatives # comparing sequences from 290863 to 291187 ................... ---------- 213 remaining sequences to the next cycle ---------- new table with 106 representatives # comparing sequences from 290974 to 291294 .................. ---------- 209 remaining sequences to the next cycle ---------- new table with 107 representatives # comparing sequences from 291085 to 291402 ................... ---------- 186 remaining sequences to the next cycle ---------- new table with 127 representatives # comparing sequences from 291216 to 291528 .................... ---------- 210 remaining sequences to the next cycle ---------- new table with 102 representatives # comparing sequences from 291318 to 291627 ................... ---------- 209 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 291418 to 291723 ................... ---------- 201 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 291522 to 291824 .................. ---------- 202 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 291622 to 291920 .................... 100.0% ---------- 195 remaining sequences to the next cycle ---------- new table with 101 representatives # comparing sequences from 291725 to 292020 .................. ---------- 190 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 291830 to 292121 .................. ---------- 172 remaining sequences to the next cycle ---------- new table with 116 representatives # comparing sequences from 291949 to 292236 ................... ---------- 165 remaining sequences to the next cycle ---------- new table with 118 representatives # comparing sequences from 292071 to 292354 ................... ---------- 183 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 292171 to 292450 .................... ---------- 179 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 292271 to 292547 .................... ---------- 174 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 292373 to 292645 ................... ---------- 159 remaining sequences to the next cycle ---------- new table with 111 representatives # comparing sequences from 292486 to 292754 .................. ---------- 167 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 292587 to 292852 ................. 100.0% ---------- 154 remaining sequences to the next cycle ---------- new table with 108 representatives # comparing sequences from 292698 to 292959 ................... ---------- 160 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 292799 to 293056 .................... ---------- 149 remaining sequences to the next cycle ---------- new table with 105 representatives # comparing sequences from 292907 to 293161 .................... 100.0% ---------- 153 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 293008 to 293258 ................... ---------- 150 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 293108 to 293355 ................. ---------- 146 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 293209 to 293452 ................. ---------- 141 remaining sequences to the next cycle ---------- new table with 101 representatives # comparing sequences from 293311 to 293551 ................. ---------- 138 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 293413 to 293649 ................... ---------- 131 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 293518 to 293751 .................... ---------- 130 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 293621 to 293850 ................. ---------- 126 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 293724 to 293950 ................. ---------- 123 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 293827 to 294049 ................... ---------- 122 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 293927 to 294146 .................... ---------- 119 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 294027 to 294242 ................... ---------- 111 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 294131 to 294343 ................... ---------- 109 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 294234 to 294442 ................... ---------- 107 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 294335 to 294540 ................... ---------- 102 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 294438 to 294639 .................. ---------- 95 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 294544 to 294741 ................... ---------- 94 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 294647 to 294841 .................... ---------- 90 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 294751 to 294941 ................... ---------- 90 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 294851 to 295038 .................. ---------- 87 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 294951 to 295134 ................... ---------- 82 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 295052 to 295232 .................. ---------- 80 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 295152 to 295328 .................... ---------- 75 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 295253 to 295426 .................... ---------- 69 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 295357 to 295526 ................... ---------- 64 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 295462 to 295628 .................. ---------- 66 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 295562 to 295724 .................. ---------- 60 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 295664 to 295823 .................... ---------- 59 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 295764 to 295919 ................... ---------- 54 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 295865 to 296017 ................... ---------- 48 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 295969 to 296117 ................... ---------- 43 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 296074 to 296219 ................. ---------- 43 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 296176 to 296317 ................ ---------- 39 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 296278 to 296416 .................... ---------- 34 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 296382 to 296516 .................. ---------- 32 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 296484 to 296614 ................... ---------- 30 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 296584 to 296711 .................. ---------- 27 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 296684 to 296808 .................. ---------- 17 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 296791 to 296911 ................. ---------- 16 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 296895 to 297011 ................... ---------- 13 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 296998 to 297111 ................... ---------- 10 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 297101 to 297210 ................ ---------- 6 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 297204 to 297310 ................. ---------- 2 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 297308 to 297410 .................---------- new table with 100 representatives # comparing sequences from 297410 to 297508 ....................---------- new table with 98 representatives # comparing sequences from 297508 to 297603 ...................---------- new table with 95 representatives # comparing sequences from 297603 to 297695 ..................---------- new table with 91 representatives # comparing sequences from 297695 to 297784 ..................---------- new table with 87 representatives # comparing sequences from 297784 to 297870 ................---------- new table with 83 representatives # comparing sequences from 297870 to 297953 ................---------- new table with 81 representatives # comparing sequences from 297953 to 298033 ................---------- new table with 76 representatives # comparing sequences from 298033 to 298110 ...................---------- new table with 75 representatives # comparing sequences from 298110 to 298184 .................---------- new table with 72 representatives # comparing sequences from 298184 to 298256 ..................---------- new table with 71 representatives # comparing sequences from 298256 to 298325 ..................---------- new table with 69 representatives # comparing sequences from 298325 to 298392 ................---------- new table with 67 representatives # comparing sequences from 298392 to 298457 .................---------- new table with 65 representatives # comparing sequences from 298457 to 298519 ...............---------- new table with 61 representatives # comparing sequences from 298519 to 298579 ...............---------- new table with 58 representatives # comparing sequences from 298579 to 298637 ...................---------- new table with 58 representatives # comparing sequences from 298637 to 298693 ...................---------- new table with 56 representatives # comparing sequences from 298693 to 298747 ..................---------- new table with 52 representatives # comparing sequences from 298747 to 298799 .................---------- new table with 52 representatives # comparing sequences from 298799 to 298850 ................---------- new table with 50 representatives # comparing sequences from 298850 to 298899 ................---------- new table with 49 representatives # comparing sequences from 298899 to 298946 ................---------- new table with 46 representatives # comparing sequences from 298946 to 298992 ...............---------- new table with 45 representatives # comparing sequences from 298992 to 299036 ...............---------- new table with 42 representatives # comparing sequences from 299036 to 299078 .............---------- new table with 41 representatives # comparing sequences from 299078 to 299119 ............---------- new table with 37 representatives # comparing sequences from 299119 to 299159 .............---------- new table with 39 representatives # comparing sequences from 299159 to 299197 ...................---------- new table with 38 representatives # comparing sequences from 299197 to 299234 ..................---------- new table with 37 representatives # comparing sequences from 299234 to 299270 ..................---------- new table with 36 representatives # comparing sequences from 299270 to 299304 .................---------- new table with 34 representatives # comparing sequences from 299304 to 300280 ..................... .......... 300000 finished 279091 clusters ---------- new table with 950 representatives 300280 finished 279364 clusters Approximated maximum memory consumption: 979M writing new database writing clustering information program completed ! Total CPU time 3624.82 ================================================================ Program: CD-HIT, V4.8.1 (+OpenMP), Jul 24 2019, 13:13:52 Command: /gscratch/srlab/programs/cd-hit-v4.8.1-2019-0228/cd-hit-est -o EPI115.cdhit -c 0.98 -i /gscratch/srlab/sam/data/P_generosa/transcriptomes/juvenile/EPI115/Trinity.fasta -p 1 -d 0 -b 3 -T 27 -M 0 Started: Mon Jul 29 12:14:46 2019 ================================================================ Output ---------------------------------------------------------------- total seq: 320691 longest and shortest : 25515 and 178 Total letters: 270039845 Sequences have been sorted Approximated minimal memory consumption: Sequence : 314M Buffer : 27 X 17M = 482M Table : 2 X 21M = 43M Miscellaneous : 8M Total : 848M Table limit with the given memory limit: Max number of representatives: 458974 Max number of word counting entries: 97905806 # comparing sequences from 0 to 1149 .---------- new table with 767 representatives # comparing sequences from 1149 to 12167 .................... ---------- 10204 remaining sequences to the next cycle ---------- new table with 582 representatives # comparing sequences from 1963 to 12953 ..................... ---------- 10116 remaining sequences to the next cycle ---------- new table with 606 representatives # comparing sequences from 2837 to 13797 .................... ---------- 10051 remaining sequences to the next cycle ---------- new table with 640 representatives # comparing sequences from 3746 to 14675 ..................... ---------- 9875 remaining sequences to the next cycle ---------- new table with 739 representatives # comparing sequences from 4800 to 15692 ................... ---------- 9833 remaining sequences to the next cycle ---------- new table with 746 representatives # comparing sequences from 5859 to 16715 ................... ---------- 9546 remaining sequences to the next cycle ---------- new table with 944 representatives # comparing sequences from 7169 to 17980 ................ ---------- 9361 remaining sequences to the next cycle ---------- new table with 1071 representatives # comparing sequences from 8619 to 19380 .................... .......... 10000 finished 7106 clusters ---------- 9344 remaining sequences to the next cycle ---------- new table with 1033 representatives # comparing sequences from 10036 to 20748 .................... ---------- 8958 remaining sequences to the next cycle ---------- new table with 1298 representatives # comparing sequences from 11790 to 22441 .................... ---------- 8793 remaining sequences to the next cycle ---------- new table with 1402 representatives # comparing sequences from 13648 to 24235 ..................... ---------- 8440 remaining sequences to the next cycle ---------- new table with 1657 representatives # comparing sequences from 15795 to 26308 ..................... ---------- 8324 remaining sequences to the next cycle ---------- new table with 1676 representatives # comparing sequences from 17984 to 28422 ...................... .......... 20000 finished 14738 clusters ---------- 7956 remaining sequences to the next cycle ---------- new table with 1940 representatives # comparing sequences from 20466 to 30818 .................... ---------- 7936 remaining sequences to the next cycle ---------- new table with 1958 representatives # comparing sequences from 22882 to 33151 ..................... ---------- 7570 remaining sequences to the next cycle ---------- new table with 2169 representatives # comparing sequences from 25581 to 35757 ...................... 100.0% ---------- 7569 remaining sequences to the next cycle ---------- new table with 2158 representatives # comparing sequences from 28188 to 38274 ..................... .......... 30000 finished 22898 clusters . ---------- 7237 remaining sequences to the next cycle ---------- new table with 2389 representatives # comparing sequences from 31037 to 41025 ..................... ---------- 7452 remaining sequences to the next cycle ---------- new table with 2131 representatives # comparing sequences from 33573 to 43473 .................... ---------- 7548 remaining sequences to the next cycle ---------- new table with 1990 representatives # comparing sequences from 35925 to 45744 .................... ---------- 7169 remaining sequences to the next cycle ---------- new table with 2275 representatives # comparing sequences from 38575 to 48303 ..................... ---------- 7165 remaining sequences to the next cycle ---------- new table with 2168 representatives # comparing sequences from 41138 to 50777 .................... ---------- 7180 remaining sequences to the next cycle ---------- new table with 2087 representatives # comparing sequences from 43597 to 53151 ....................... ---------- 7121 remaining sequences to the next cycle ---------- new table with 2117 representatives # comparing sequences from 46030 to 55501 ................... 100.0% ---------- 6687 remaining sequences to the next cycle ---------- new table with 2421 representatives # comparing sequences from 48814 to 58189 ..................... .......... 50000 finished 39989 clusters . 100.0% ---------- 6205 remaining sequences to the next cycle ---------- new table with 2765 representatives # comparing sequences from 51984 to 61249 ....................... ---------- 6496 remaining sequences to the next cycle ---------- new table with 2444 representatives # comparing sequences from 54753 to 63923 ..................... ---------- 6444 remaining sequences to the next cycle ---------- new table with 2410 representatives # comparing sequences from 57479 to 66555 ....................... .......... 60000 finished 48836 clusters ---------- 6185 remaining sequences to the next cycle ---------- new table with 2590 representatives # comparing sequences from 60370 to 69346 ....................... ---------- 6216 remaining sequences to the next cycle ---------- new table with 2478 representatives # comparing sequences from 63130 to 72011 ...................... ---------- 6166 remaining sequences to the next cycle ---------- new table with 2436 representatives # comparing sequences from 65845 to 74632 ....................... ---------- 5588 remaining sequences to the next cycle ---------- new table with 2912 representatives # comparing sequences from 69044 to 77721 ..................... .......... 70000 finished 57875 clusters . ---------- 5789 remaining sequences to the next cycle ---------- new table with 2640 representatives # comparing sequences from 71932 to 80509 ....................... ---------- 5258 remaining sequences to the next cycle ---------- new table with 3059 representatives # comparing sequences from 75251 to 83714 ..................... ---------- 5014 remaining sequences to the next cycle ---------- new table with 3156 representatives # comparing sequences from 78700 to 87044 ...................... .......... 80000 finished 67037 clusters . ---------- 5133 remaining sequences to the next cycle ---------- new table with 2931 representatives # comparing sequences from 81911 to 90144 ...................... ---------- 5244 remaining sequences to the next cycle ---------- new table with 2743 representatives # comparing sequences from 84900 to 93030 ........................ ---------- 4588 remaining sequences to the next cycle ---------- new table with 3284 representatives # comparing sequences from 88442 to 96450 ..................... .......... 90000 finished 76259 clusters .. ---------- 4361 remaining sequences to the next cycle ---------- new table with 3367 representatives # comparing sequences from 92089 to 99971 ........................ ---------- 3917 remaining sequences to the next cycle ---------- new table with 3668 representatives # comparing sequences from 96054 to 103800 ...................... ---------- 3911 remaining sequences to the next cycle ---------- new table with 3581 representatives # comparing sequences from 99889 to 107502 .................... .......... 100000 finished 85531 clusters ... ---------- 3503 remaining sequences to the next cycle ---------- new table with 3799 representatives # comparing sequences from 103999 to 111471 ........................ ---------- 3519 remaining sequences to the next cycle ---------- new table with 3693 representatives # comparing sequences from 107952 to 115287 ....................... .......... 110000 finished 94822 clusters . ---------- 3740 remaining sequences to the next cycle ---------- new table with 3335 representatives # comparing sequences from 111547 to 118758 ..................... ---------- 3833 remaining sequences to the next cycle ---------- new table with 3176 representatives # comparing sequences from 114925 to 122020 ........................ ---------- 3251 remaining sequences to the next cycle ---------- new table with 3595 representatives # comparing sequences from 118769 to 125731 ...................... .......... 120000 finished 104179 clusters .. ---------- 3054 remaining sequences to the next cycle ---------- new table with 3668 representatives # comparing sequences from 122677 to 129505 ...................... ---------- 2690 remaining sequences to the next cycle ---------- new table with 3895 representatives # comparing sequences from 126815 to 133500 ...................... .......... 130000 finished 113590 clusters ---------- 2645 remaining sequences to the next cycle ---------- new table with 3812 representatives # comparing sequences from 130855 to 137401 ...................... 100.0% ---------- 3033 remaining sequences to the next cycle ---------- new table with 3330 representatives # comparing sequences from 134368 to 140792 ...................... 100.0% ---------- 2858 remaining sequences to the next cycle ---------- new table with 3364 representatives # comparing sequences from 137934 to 144235 ....................... .......... 140000 finished 123047 clusters . ---------- 2953 remaining sequences to the next cycle ---------- new table with 3172 representatives # comparing sequences from 141282 to 147468 ...................... ---------- 2626 remaining sequences to the next cycle ---------- new table with 3356 representatives # comparing sequences from 144842 to 150905 ........................ ---------- 2835 remaining sequences to the next cycle ---------- new table with 3049 representatives # comparing sequences from 148070 to 154022 ...................... .......... 150000 finished 132489 clusters . ---------- 2498 remaining sequences to the next cycle ---------- new table with 3262 representatives # comparing sequences from 151524 to 157357 ....................... ---------- 2894 remaining sequences to the next cycle ---------- new table with 2779 representatives # comparing sequences from 154463 to 160195 ....................... ---------- 2471 remaining sequences to the next cycle ---------- new table with 3092 representatives # comparing sequences from 157724 to 163343 ....................... .......... 160000 finished 141969 clusters ---------- 2568 remaining sequences to the next cycle ---------- new table with 2910 representatives # comparing sequences from 160775 to 166289 ....................... 100.0% ---------- 2480 remaining sequences to the next cycle ---------- new table with 2859 representatives # comparing sequences from 163809 to 169218 ....................... 100.0% ---------- 2556 remaining sequences to the next cycle ---------- new table with 2709 representatives # comparing sequences from 166662 to 171973 ....................... ---------- 2631 remaining sequences to the next cycle ---------- new table with 2535 representatives # comparing sequences from 169342 to 174560 .................... .......... 170000 finished 151442 clusters . ---------- 2124 remaining sequences to the next cycle ---------- new table with 2945 representatives # comparing sequences from 172436 to 177548 ....................... ---------- 2394 remaining sequences to the next cycle ---------- new table with 2592 representatives # comparing sequences from 175154 to 180172 ...................... ---------- 2301 remaining sequences to the next cycle ---------- new table with 2582 representatives # comparing sequences from 177871 to 182795 ....................... .......... 180000 finished 160944 clusters ---------- 2232 remaining sequences to the next cycle ---------- new table with 2530 representatives # comparing sequences from 180563 to 185395 ....................... ---------- 1863 remaining sequences to the next cycle ---------- new table with 2838 representatives # comparing sequences from 183532 to 188261 ....................... ---------- 2039 remaining sequences to the next cycle ---------- new table with 2549 representatives # comparing sequences from 186222 to 190858 ..................... ---------- 2098 remaining sequences to the next cycle ---------- new table with 2430 representatives # comparing sequences from 188760 to 193309 ..................... .......... 190000 finished 170474 clusters . ---------- 2110 remaining sequences to the next cycle ---------- new table with 2342 representatives # comparing sequences from 191199 to 195664 ...................... ---------- 1744 remaining sequences to the next cycle ---------- new table with 2612 representatives # comparing sequences from 193920 to 198291 ....................... ---------- 1920 remaining sequences to the next cycle ---------- new table with 2343 representatives # comparing sequences from 196371 to 200657 ...................... ---------- 1972 remaining sequences to the next cycle ---------- new table with 2214 representatives # comparing sequences from 198685 to 202892 ................... .......... 200000 finished 180042 clusters . ---------- 1800 remaining sequences to the next cycle ---------- new table with 2296 representatives # comparing sequences from 201092 to 205216 ...................... 100.0% ---------- 1612 remaining sequences to the next cycle ---------- new table with 2413 representatives # comparing sequences from 203604 to 207641 ...................... ---------- 2039 remaining sequences to the next cycle ---------- new table with 1906 representatives # comparing sequences from 205602 to 209570 ...................... ---------- 1695 remaining sequences to the next cycle ---------- new table with 2169 representatives # comparing sequences from 207875 to 211765 ..................... .......... 210000 finished 189621 clusters ---------- 1667 remaining sequences to the next cycle ---------- new table with 2138 representatives # comparing sequences from 210098 to 213911 ..................... ---------- 1492 remaining sequences to the next cycle ---------- new table with 2223 representatives # comparing sequences from 212419 to 216152 ..................... ---------- 1723 remaining sequences to the next cycle ---------- new table with 1938 representatives # comparing sequences from 214429 to 218093 ...................... ---------- 1833 remaining sequences to the next cycle ---------- new table with 1753 representatives # comparing sequences from 216260 to 219861 ..................... ---------- 1672 remaining sequences to the next cycle ---------- new table with 1865 representatives # comparing sequences from 218189 to 221723 ...................... .......... 220000 finished 199244 clusters ---------- 1708 remaining sequences to the next cycle ---------- new table with 1763 representatives # comparing sequences from 220015 to 223486 ..................... ---------- 1663 remaining sequences to the next cycle ---------- new table with 1748 representatives # comparing sequences from 221823 to 225232 ...................... ---------- 1682 remaining sequences to the next cycle ---------- new table with 1658 representatives # comparing sequences from 223550 to 226899 ..................... ---------- 2097 remaining sequences to the next cycle ---------- new table with 1212 representatives # comparing sequences from 224802 to 228108 ...................... ---------- 1850 remaining sequences to the next cycle ---------- new table with 1418 representatives # comparing sequences from 226258 to 229514 .................. ---------- 1724 remaining sequences to the next cycle ---------- new table with 1480 representatives # comparing sequences from 227790 to 230993 ...................... 100.0% ---------- 1475 remaining sequences to the next cycle ---------- new table with 1678 representatives # comparing sequences from 229518 to 232661 .................... .......... 230000 finished 208922 clusters . ---------- 1499 remaining sequences to the next cycle ---------- new table with 1590 representatives # comparing sequences from 231162 to 234249 ..................... ---------- 1557 remaining sequences to the next cycle ---------- new table with 1483 representatives # comparing sequences from 232692 to 235726 ...................... ---------- 1575 remaining sequences to the next cycle ---------- new table with 1419 representatives # comparing sequences from 234151 to 237135 ................... ---------- 1656 remaining sequences to the next cycle ---------- new table with 1291 representatives # comparing sequences from 235479 to 238417 ..................... ---------- 1503 remaining sequences to the next cycle ---------- new table with 1405 representatives # comparing sequences from 236914 to 239802 .................... 100.0% ---------- 1309 remaining sequences to the next cycle ---------- new table with 1533 representatives # comparing sequences from 238493 to 241327 .................... 100.0% ---------- 1367 remaining sequences to the next cycle ---------- new table with 1442 representatives # comparing sequences from 239960 to 242743 ..................... .......... 240000 finished 218655 clusters . ---------- 1304 remaining sequences to the next cycle ---------- new table with 1442 representatives # comparing sequences from 241439 to 244171 ..................... ---------- 1390 remaining sequences to the next cycle ---------- new table with 1318 representatives # comparing sequences from 242781 to 245467 .................... ---------- 1471 remaining sequences to the next cycle ---------- new table with 1189 representatives # comparing sequences from 243996 to 246640 ..................... ---------- 1428 remaining sequences to the next cycle ---------- new table with 1196 representatives # comparing sequences from 245212 to 247814 ..................... ---------- 1442 remaining sequences to the next cycle ---------- new table with 1129 representatives # comparing sequences from 246372 to 248934 ..................... ---------- 1368 remaining sequences to the next cycle ---------- new table with 1163 representatives # comparing sequences from 247566 to 250087 ..................... ---------- 1391 remaining sequences to the next cycle ---------- new table with 1097 representatives # comparing sequences from 248696 to 251178 ..................... ---------- 1322 remaining sequences to the next cycle ---------- new table with 1136 representatives # comparing sequences from 249856 to 252298 ..................... .......... 250000 finished 228430 clusters 100.0% ---------- 1317 remaining sequences to the next cycle ---------- new table with 1107 representatives # comparing sequences from 250981 to 253384 ...................... ---------- 1268 remaining sequences to the next cycle ---------- new table with 1111 representatives # comparing sequences from 252116 to 254480 ..................... 100.0% ---------- 1176 remaining sequences to the next cycle ---------- new table with 1159 representatives # comparing sequences from 253304 to 255627 ..................... ---------- 1226 remaining sequences to the next cycle ---------- new table with 1074 representatives # comparing sequences from 254401 to 256686 ..................... ---------- 1295 remaining sequences to the next cycle ---------- new table with 969 representatives # comparing sequences from 255391 to 257642 ..................... ---------- 1231 remaining sequences to the next cycle ---------- new table with 998 representatives # comparing sequences from 256411 to 258627 .................... ---------- 1138 remaining sequences to the next cycle ---------- new table with 1054 representatives # comparing sequences from 257489 to 259668 ..................... ---------- 1172 remaining sequences to the next cycle ---------- new table with 979 representatives # comparing sequences from 258496 to 260640 ..................... ---------- 1255 remaining sequences to the next cycle ---------- new table with 874 representatives # comparing sequences from 259385 to 261499 ................... .......... 260000 finished 238220 clusters ---------- 1185 remaining sequences to the next cycle ---------- new table with 913 representatives # comparing sequences from 260314 to 262395 ................... ---------- 1222 remaining sequences to the next cycle ---------- new table with 834 representatives # comparing sequences from 261173 to 263225 ..................... ---------- 1187 remaining sequences to the next cycle ---------- new table with 855 representatives # comparing sequences from 262038 to 264060 .................... ---------- 1206 remaining sequences to the next cycle ---------- new table with 802 representatives # comparing sequences from 262854 to 264848 ..................... ---------- 1180 remaining sequences to the next cycle ---------- new table with 799 representatives # comparing sequences from 263668 to 265634 ..................... 100.0% ---------- 1195 remaining sequences to the next cycle ---------- new table with 760 representatives # comparing sequences from 264439 to 266378 .................... ---------- 1145 remaining sequences to the next cycle ---------- new table with 788 representatives # comparing sequences from 265233 to 267145 .................... ---------- 1158 remaining sequences to the next cycle ---------- new table with 739 representatives # comparing sequences from 265987 to 267873 ..................... ---------- 1165 remaining sequences to the next cycle ---------- new table with 715 representatives # comparing sequences from 266708 to 268569 .................... ---------- 1308 remaining sequences to the next cycle ---------- new table with 544 representatives # comparing sequences from 267261 to 269103 .................... 100.0% ---------- 1129 remaining sequences to the next cycle ---------- new table with 692 representatives # comparing sequences from 267974 to 269791 ..................... ---------- 1117 remaining sequences to the next cycle ---------- new table with 689 representatives # comparing sequences from 268674 to 270467 .................... 100.0% ---------- 1066 remaining sequences to the next cycle ---------- new table with 702 representatives # comparing sequences from 269401 to 271169 ..................... .......... 270000 finished 248032 clusters ---------- 1085 remaining sequences to the next cycle ---------- new table with 669 representatives # comparing sequences from 270084 to 271829 .................. 100.0% ---------- 1067 remaining sequences to the next cycle ---------- new table with 667 representatives # comparing sequences from 270762 to 272483 .................... ---------- 1065 remaining sequences to the next cycle ---------- new table with 641 representatives # comparing sequences from 271418 to 273117 .................... ---------- 1133 remaining sequences to the next cycle ---------- new table with 562 representatives # comparing sequences from 271984 to 273663 ..................... ---------- 1055 remaining sequences to the next cycle ---------- new table with 604 representatives # comparing sequences from 272608 to 274266 ..................... ---------- 1035 remaining sequences to the next cycle ---------- new table with 617 representatives # comparing sequences from 273231 to 274867 .................... ---------- 1018 remaining sequences to the next cycle ---------- new table with 600 representatives # comparing sequences from 273849 to 275464 .................... ---------- 975 remaining sequences to the next cycle ---------- new table with 634 representatives # comparing sequences from 274489 to 276082 .................... ---------- 897 remaining sequences to the next cycle ---------- new table with 676 representatives # comparing sequences from 275185 to 276754 .................... ---------- 923 remaining sequences to the next cycle ---------- new table with 640 representatives # comparing sequences from 275831 to 277377 .................... ---------- 871 remaining sequences to the next cycle ---------- new table with 662 representatives # comparing sequences from 276506 to 278029 ..................... ---------- 907 remaining sequences to the next cycle ---------- new table with 600 representatives # comparing sequences from 277122 to 278624 .................... ---------- 931 remaining sequences to the next cycle ---------- new table with 558 representatives # comparing sequences from 277693 to 279175 ..................... ---------- 888 remaining sequences to the next cycle ---------- new table with 580 representatives # comparing sequences from 278287 to 279749 .................... ---------- 841 remaining sequences to the next cycle ---------- new table with 611 representatives # comparing sequences from 278908 to 280348 ..................... ---------- 881 remaining sequences to the next cycle ---------- new table with 550 representatives # comparing sequences from 279467 to 280888 .................... ---------- 890 remaining sequences to the next cycle ---------- new table with 522 representatives # comparing sequences from 279998 to 281401 ..................... .......... 280000 finished 257838 clusters ---------- 871 remaining sequences to the next cycle ---------- new table with 525 representatives # comparing sequences from 280530 to 281914 ..................... ---------- 799 remaining sequences to the next cycle ---------- new table with 570 representatives # comparing sequences from 281115 to 282479 .................. 100.0% ---------- 909 remaining sequences to the next cycle ---------- new table with 451 representatives # comparing sequences from 281570 to 282919 ..................... 100.0% ---------- 785 remaining sequences to the next cycle ---------- new table with 550 representatives # comparing sequences from 282134 to 283463 .................... 100.0% ---------- 803 remaining sequences to the next cycle ---------- new table with 525 representatives # comparing sequences from 282660 to 283971 .................... ---------- 825 remaining sequences to the next cycle ---------- new table with 473 representatives # comparing sequences from 283146 to 284440 ................... 100.0% ---------- 795 remaining sequences to the next cycle ---------- new table with 497 representatives # comparing sequences from 283645 to 284922 ..................... ---------- 802 remaining sequences to the next cycle ---------- new table with 463 representatives # comparing sequences from 284120 to 285381 ................... 100.0% ---------- 792 remaining sequences to the next cycle ---------- new table with 462 representatives # comparing sequences from 284589 to 285833 ................... ---------- 922 remaining sequences to the next cycle ---------- new table with 321 representatives # comparing sequences from 284911 to 286144 ..................... 100.0% ---------- 887 remaining sequences to the next cycle ---------- new table with 333 representatives # comparing sequences from 285257 to 286478 .................... 100.0% ---------- 773 remaining sequences to the next cycle ---------- new table with 441 representatives # comparing sequences from 285705 to 286911 ..................... ---------- 756 remaining sequences to the next cycle ---------- new table with 449 representatives # comparing sequences from 286155 to 287345 .................... ---------- 753 remaining sequences to the next cycle ---------- new table with 432 representatives # comparing sequences from 286592 to 287767 .................... ---------- 741 remaining sequences to the next cycle ---------- new table with 425 representatives # comparing sequences from 287026 to 288186 .................... ---------- 712 remaining sequences to the next cycle ---------- new table with 440 representatives # comparing sequences from 287474 to 288619 .................... ---------- 706 remaining sequences to the next cycle ---------- new table with 424 representatives # comparing sequences from 287913 to 289043 .................... 100.0% ---------- 730 remaining sequences to the next cycle ---------- new table with 398 representatives # comparing sequences from 288313 to 289429 ................... ---------- 715 remaining sequences to the next cycle ---------- new table with 396 representatives # comparing sequences from 288714 to 289816 .................... ---------- 704 remaining sequences to the next cycle ---------- new table with 386 representatives # comparing sequences from 289112 to 290200 .................... ---------- 675 remaining sequences to the next cycle ---------- new table with 410 representatives # comparing sequences from 289525 to 290599 .................. ---------- 694 remaining sequences to the next cycle ---------- new table with 375 representatives # comparing sequences from 289905 to 290966 ................... .......... 290000 finished 267674 clusters ---------- 672 remaining sequences to the next cycle ---------- new table with 378 representatives # comparing sequences from 290294 to 291342 .................... ---------- 633 remaining sequences to the next cycle ---------- new table with 409 representatives # comparing sequences from 290709 to 291742 ................... ---------- 654 remaining sequences to the next cycle ---------- new table with 373 representatives # comparing sequences from 291088 to 292108 ................... ---------- 663 remaining sequences to the next cycle ---------- new table with 352 representatives # comparing sequences from 291445 to 292453 ................... ---------- 619 remaining sequences to the next cycle ---------- new table with 377 representatives # comparing sequences from 291834 to 292829 ..................... ---------- 676 remaining sequences to the next cycle ---------- new table with 317 representatives # comparing sequences from 292153 to 293137 ................... ---------- 623 remaining sequences to the next cycle ---------- new table with 353 representatives # comparing sequences from 292514 to 293485 .................... ---------- 577 remaining sequences to the next cycle ---------- new table with 381 representatives # comparing sequences from 292908 to 293866 ..................... ---------- 599 remaining sequences to the next cycle ---------- new table with 358 representatives # comparing sequences from 293267 to 294212 ................... ---------- 582 remaining sequences to the next cycle ---------- new table with 360 representatives # comparing sequences from 293630 to 294563 .................... ---------- 574 remaining sequences to the next cycle ---------- new table with 349 representatives # comparing sequences from 293989 to 294909 .................... ---------- 588 remaining sequences to the next cycle ---------- new table with 322 representatives # comparing sequences from 294321 to 295230 .................... ---------- 584 remaining sequences to the next cycle ---------- new table with 324 representatives # comparing sequences from 294646 to 295544 .................... ---------- 592 remaining sequences to the next cycle ---------- new table with 301 representatives # comparing sequences from 294952 to 295839 ..................... ---------- 552 remaining sequences to the next cycle ---------- new table with 324 representatives # comparing sequences from 295287 to 296163 ................... 100.0% ---------- 566 remaining sequences to the next cycle ---------- new table with 301 representatives # comparing sequences from 295597 to 296462 ................... ---------- 559 remaining sequences to the next cycle ---------- new table with 306 representatives # comparing sequences from 295903 to 296757 ................... ---------- 559 remaining sequences to the next cycle ---------- new table with 288 representatives # comparing sequences from 296198 to 297042 .................. ---------- 524 remaining sequences to the next cycle ---------- new table with 311 representatives # comparing sequences from 296518 to 297351 .................... 100.0% ---------- 510 remaining sequences to the next cycle ---------- new table with 320 representatives # comparing sequences from 296841 to 297663 ..................... 100.0% ---------- 529 remaining sequences to the next cycle ---------- new table with 293 representatives # comparing sequences from 297134 to 297946 ................... ---------- 503 remaining sequences to the next cycle ---------- new table with 303 representatives # comparing sequences from 297443 to 298244 .................... ---------- 494 remaining sequences to the next cycle ---------- new table with 301 representatives # comparing sequences from 297750 to 298541 ..................... ---------- 485 remaining sequences to the next cycle ---------- new table with 301 representatives # comparing sequences from 298056 to 298836 ................... ---------- 501 remaining sequences to the next cycle ---------- new table with 279 representatives # comparing sequences from 298335 to 299105 ................... ---------- 487 remaining sequences to the next cycle ---------- new table with 281 representatives # comparing sequences from 298618 to 299379 .................... ---------- 481 remaining sequences to the next cycle ---------- new table with 274 representatives # comparing sequences from 298898 to 299649 ..................... ---------- 485 remaining sequences to the next cycle ---------- new table with 258 representatives # comparing sequences from 299164 to 299906 ................... ---------- 477 remaining sequences to the next cycle ---------- new table with 264 representatives # comparing sequences from 299429 to 300162 .................... ---------- 467 remaining sequences to the next cycle ---------- new table with 266 representatives # comparing sequences from 299695 to 300419 .................... ---------- 462 remaining sequences to the next cycle ---------- new table with 253 representatives # comparing sequences from 299957 to 300671 .................... .......... 300000 finished 277499 clusters ---------- 463 remaining sequences to the next cycle ---------- new table with 243 representatives # comparing sequences from 300208 to 300914 ................... ---------- 442 remaining sequences to the next cycle ---------- new table with 257 representatives # comparing sequences from 300472 to 301169 .................... ---------- 439 remaining sequences to the next cycle ---------- new table with 257 representatives # comparing sequences from 300730 to 301418 ................... ---------- 449 remaining sequences to the next cycle ---------- new table with 239 representatives # comparing sequences from 300969 to 301649 ................... ---------- 417 remaining sequences to the next cycle ---------- new table with 253 representatives # comparing sequences from 301232 to 301903 .................... ---------- 418 remaining sequences to the next cycle ---------- new table with 247 representatives # comparing sequences from 301485 to 302147 ................... ---------- 429 remaining sequences to the next cycle ---------- new table with 226 representatives # comparing sequences from 301718 to 302372 .................... ---------- 425 remaining sequences to the next cycle ---------- new table with 223 representatives # comparing sequences from 301947 to 302593 ..................... ---------- 415 remaining sequences to the next cycle ---------- new table with 231 representatives # comparing sequences from 302178 to 302816 ................... ---------- 412 remaining sequences to the next cycle ---------- new table with 223 representatives # comparing sequences from 302404 to 303034 ................... ---------- 413 remaining sequences to the next cycle ---------- new table with 211 representatives # comparing sequences from 302621 to 303244 .................... 100.0% ---------- 393 remaining sequences to the next cycle ---------- new table with 224 representatives # comparing sequences from 302851 to 303466 ..................... ---------- 365 remaining sequences to the next cycle ---------- new table with 244 representatives # comparing sequences from 303101 to 303707 ................... ---------- 370 remaining sequences to the next cycle ---------- new table with 236 representatives # comparing sequences from 303337 to 303935 .................... ---------- 349 remaining sequences to the next cycle ---------- new table with 248 representatives # comparing sequences from 303586 to 304175 .................... ---------- 322 remaining sequences to the next cycle ---------- new table with 262 representatives # comparing sequences from 303853 to 304433 .................... ---------- 306 remaining sequences to the next cycle ---------- new table with 270 representatives # comparing sequences from 304127 to 304698 ................... 100.0% ---------- 342 remaining sequences to the next cycle ---------- new table with 223 representatives # comparing sequences from 304356 to 304919 ................... ---------- 344 remaining sequences to the next cycle ---------- new table with 217 representatives # comparing sequences from 304575 to 305130 .................... ---------- 355 remaining sequences to the next cycle ---------- new table with 199 representatives # comparing sequences from 304775 to 305323 ................... ---------- 361 remaining sequences to the next cycle ---------- new table with 183 representatives # comparing sequences from 304962 to 305504 ................... 100.0% ---------- 348 remaining sequences to the next cycle ---------- new table with 189 representatives # comparing sequences from 305156 to 305691 ................... ---------- 325 remaining sequences to the next cycle ---------- new table with 204 representatives # comparing sequences from 305366 to 305894 .................... ---------- 339 remaining sequences to the next cycle ---------- new table with 188 representatives # comparing sequences from 305555 to 306076 .................... ---------- 348 remaining sequences to the next cycle ---------- new table with 171 representatives # comparing sequences from 305728 to 306243 .................... ---------- 337 remaining sequences to the next cycle ---------- new table with 178 representatives # comparing sequences from 305906 to 306415 ..................... ---------- 345 remaining sequences to the next cycle ---------- new table with 164 representatives # comparing sequences from 306070 to 306574 .................... ---------- 325 remaining sequences to the next cycle ---------- new table with 177 representatives # comparing sequences from 306249 to 306747 .................. ---------- 298 remaining sequences to the next cycle ---------- new table with 191 representatives # comparing sequences from 306449 to 306940 .................. ---------- 309 remaining sequences to the next cycle ---------- new table with 178 representatives # comparing sequences from 306631 to 307115 .................. ---------- 297 remaining sequences to the next cycle ---------- new table with 181 representatives # comparing sequences from 306818 to 307296 ................... ---------- 311 remaining sequences to the next cycle ---------- new table with 166 representatives # comparing sequences from 306985 to 307457 .................... ---------- 321 remaining sequences to the next cycle ---------- new table with 151 representatives # comparing sequences from 307136 to 307603 ................... ---------- 311 remaining sequences to the next cycle ---------- new table with 156 representatives # comparing sequences from 307292 to 307754 .................... ---------- 325 remaining sequences to the next cycle ---------- new table with 137 representatives # comparing sequences from 307429 to 307886 .................... ---------- 292 remaining sequences to the next cycle ---------- new table with 161 representatives # comparing sequences from 307594 to 308045 .................... 100.0% ---------- 284 remaining sequences to the next cycle ---------- new table with 162 representatives # comparing sequences from 307761 to 308206 ................... ---------- 342 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 307864 to 308306 ................... ---------- 283 remaining sequences to the next cycle ---------- new table with 157 representatives # comparing sequences from 308023 to 308459 ................... ---------- 320 remaining sequences to the next cycle ---------- new table with 113 representatives # comparing sequences from 308139 to 308571 ................... ---------- 291 remaining sequences to the next cycle ---------- new table with 138 representatives # comparing sequences from 308280 to 308707 .................... ---------- 314 remaining sequences to the next cycle ---------- new table with 113 representatives # comparing sequences from 308393 to 308817 ................... ---------- 275 remaining sequences to the next cycle ---------- new table with 149 representatives # comparing sequences from 308542 to 308960 .................... ---------- 295 remaining sequences to the next cycle ---------- new table with 123 representatives # comparing sequences from 308665 to 309079 .................... ---------- 278 remaining sequences to the next cycle ---------- new table with 133 representatives # comparing sequences from 308801 to 309211 .................... ---------- 281 remaining sequences to the next cycle ---------- new table with 129 representatives # comparing sequences from 308930 to 309335 .................... ---------- 271 remaining sequences to the next cycle ---------- new table with 133 representatives # comparing sequences from 309064 to 309464 .................. ---------- 268 remaining sequences to the next cycle ---------- new table with 131 representatives # comparing sequences from 309196 to 309592 .................... ---------- 246 remaining sequences to the next cycle ---------- new table with 144 representatives # comparing sequences from 309346 to 309737 ................... ---------- 259 remaining sequences to the next cycle ---------- new table with 130 representatives # comparing sequences from 309478 to 309864 .................... ---------- 261 remaining sequences to the next cycle ---------- new table with 124 representatives # comparing sequences from 309603 to 309985 ................... 100.0% ---------- 257 remaining sequences to the next cycle ---------- new table with 125 representatives # comparing sequences from 309728 to 310106 .................... ---------- 258 remaining sequences to the next cycle ---------- new table with 120 representatives # comparing sequences from 309848 to 310221 .................... 100.0% ---------- 254 remaining sequences to the next cycle ---------- new table with 119 representatives # comparing sequences from 309967 to 310336 .................... .......... 310000 finished 287343 clusters ---------- 237 remaining sequences to the next cycle ---------- new table with 132 representatives # comparing sequences from 310099 to 310464 ................... ---------- 237 remaining sequences to the next cycle ---------- new table with 124 representatives # comparing sequences from 310227 to 310587 ................. ---------- 237 remaining sequences to the next cycle ---------- new table with 121 representatives # comparing sequences from 310350 to 310706 ................... ---------- 252 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 310454 to 310807 ................... ---------- 218 remaining sequences to the next cycle ---------- new table with 129 representatives # comparing sequences from 310589 to 310937 .................... ---------- 227 remaining sequences to the next cycle ---------- new table with 117 representatives # comparing sequences from 310710 to 311054 ................... ---------- 228 remaining sequences to the next cycle ---------- new table with 114 representatives # comparing sequences from 310826 to 311166 .................. ---------- 223 remaining sequences to the next cycle ---------- new table with 117 representatives # comparing sequences from 310943 to 311279 ..................... ---------- 216 remaining sequences to the next cycle ---------- new table with 120 representatives # comparing sequences from 311063 to 311395 .................... ---------- 222 remaining sequences to the next cycle ---------- new table with 110 representatives # comparing sequences from 311173 to 311501 ................... 100.0% ---------- 210 remaining sequences to the next cycle ---------- new table with 117 representatives # comparing sequences from 311291 to 311615 ................... ---------- 223 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 311392 to 311712 .................. ---------- 215 remaining sequences to the next cycle ---------- new table with 102 representatives # comparing sequences from 311497 to 311814 .................... ---------- 208 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 311606 to 311919 .................. ---------- 207 remaining sequences to the next cycle ---------- new table with 105 representatives # comparing sequences from 311712 to 312021 .................. ---------- 209 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 311812 to 312118 ................. ---------- 187 remaining sequences to the next cycle ---------- new table with 111 representatives # comparing sequences from 311931 to 312233 ................... ---------- 199 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 312034 to 312332 .................... ---------- 196 remaining sequences to the next cycle ---------- new table with 101 representatives # comparing sequences from 312136 to 312431 ................... ---------- 195 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 312236 to 312527 .................... ---------- 191 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 312336 to 312624 ................... ---------- 188 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 312436 to 312720 .................. ---------- 183 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 312537 to 312818 ................. ---------- 180 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 312638 to 312915 ................... ---------- 175 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 312740 to 313014 ................... ---------- 167 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 312847 to 313117 .................. 100.0% ---------- 167 remaining sequences to the next cycle ---------- new table with 101 representatives # comparing sequences from 312950 to 313216 .................. ---------- 160 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 313056 to 313319 ................. ---------- 161 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 313158 to 313417 ................... ---------- 157 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 313260 to 313516 .................... ---------- 154 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 313362 to 313614 .................... ---------- 148 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 313466 to 313715 ................... ---------- 149 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 313566 to 313811 ................... ---------- 145 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 313666 to 313908 .................. ---------- 142 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 313766 to 314004 ................... ---------- 137 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 313867 to 314102 .................... ---------- 135 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 313967 to 314198 ..................... ---------- 130 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 314068 to 314296 ................... ---------- 125 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 314171 to 314395 ................... ---------- 123 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 314272 to 314493 .................. ---------- 119 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 314374 to 314591 .................... ---------- 113 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 314478 to 314692 .................... ---------- 110 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 314582 to 314792 .................. ---------- 109 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 314683 to 314890 .................. ---------- 104 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 314786 to 314989 ................... ---------- 103 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 314886 to 315086 ................... ---------- 100 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 314986 to 315182 ..................... ---------- 96 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 315086 to 315279 ................... ---------- 93 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 315186 to 315375 ................... ---------- 89 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 315286 to 315472 ................... ---------- 86 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 315386 to 315568 .................. ---------- 80 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 315488 to 315667 ................... ---------- 78 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 315589 to 315764 .................. ---------- 68 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 315696 to 315868 ................... ---------- 72 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 315796 to 315964 .................. ---------- 66 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 315898 to 316063 .................. ---------- 61 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 316002 to 316163 ................ ---------- 58 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 316105 to 316263 ................... ---------- 58 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 316205 to 316359 ................... ---------- 54 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 316305 to 316456 .................. ---------- 51 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 316405 to 316552 .................. ---------- 47 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 316505 to 316649 .................. ---------- 44 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 316605 to 316745 .................. ---------- 40 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 316705 to 316842 .................... ---------- 33 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 316809 to 316942 ................... ---------- 31 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 316911 to 317041 .................... ---------- 30 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 317011 to 317137 .................. ---------- 25 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 317112 to 317235 .................. ---------- 20 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 317215 to 317334 .................. ---------- 13 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 317321 to 317437 ................... ---------- 14 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 317423 to 317535 ................... ---------- 10 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 317525 to 317634 .................. ---------- 9 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 317625 to 317730 ................. ---------- 5 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 317725 to 317827 ................. ---------- 2 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 317825 to 317923 ....................---------- new table with 98 representatives # comparing sequences from 317923 to 318018 ...................---------- new table with 94 representatives # comparing sequences from 318018 to 318110 .................---------- new table with 90 representatives # comparing sequences from 318110 to 318199 ..................---------- new table with 87 representatives # comparing sequences from 318199 to 318284 ................---------- new table with 84 representatives # comparing sequences from 318284 to 318367 .................---------- new table with 81 representatives # comparing sequences from 318367 to 318447 ................---------- new table with 78 representatives # comparing sequences from 318447 to 318524 ..................---------- new table with 75 representatives # comparing sequences from 318524 to 318598 ...................---------- new table with 73 representatives # comparing sequences from 318598 to 318670 .................---------- new table with 71 representatives # comparing sequences from 318670 to 318739 ................---------- new table with 68 representatives # comparing sequences from 318739 to 318806 .................---------- new table with 67 representatives # comparing sequences from 318806 to 318871 ................---------- new table with 65 representatives # comparing sequences from 318871 to 318933 ................---------- new table with 62 representatives # comparing sequences from 318933 to 318993 ...............---------- new table with 60 representatives # comparing sequences from 318993 to 319051 .....................---------- new table with 58 representatives # comparing sequences from 319051 to 319107 ..................---------- new table with 56 representatives # comparing sequences from 319107 to 319161 ..................---------- new table with 54 representatives # comparing sequences from 319161 to 319213 ..................---------- new table with 52 representatives # comparing sequences from 319213 to 319263 ................---------- new table with 50 representatives # comparing sequences from 319263 to 319312 .................---------- new table with 49 representatives # comparing sequences from 319312 to 319359 ...............---------- new table with 47 representatives # comparing sequences from 319359 to 319404 ...............---------- new table with 44 representatives # comparing sequences from 319404 to 319448 ..............---------- new table with 43 representatives # comparing sequences from 319448 to 319490 .............---------- new table with 41 representatives # comparing sequences from 319490 to 319531 .............---------- new table with 38 representatives # comparing sequences from 319531 to 319571 .............---------- new table with 38 representatives # comparing sequences from 319571 to 319609 ...................---------- new table with 38 representatives # comparing sequences from 319609 to 319646 ..................---------- new table with 37 representatives # comparing sequences from 319646 to 319682 ..................---------- new table with 35 representatives # comparing sequences from 319682 to 319716 .................---------- new table with 34 representatives # comparing sequences from 319716 to 320691 ..................... .......... 320000 finished 297170 clusters ---------- new table with 950 representatives 320691 finished 297848 clusters Approximated maximum memory consumption: 946M writing new database writing clustering information program completed ! Total CPU time 2907.17 ================================================================ Program: CD-HIT, V4.8.1 (+OpenMP), Jul 24 2019, 13:13:52 Command: /gscratch/srlab/programs/cd-hit-v4.8.1-2019-0228/cd-hit-est -o EPI116.cdhit -c 0.98 -i /gscratch/srlab/sam/data/P_generosa/transcriptomes/juvenile/EPI116/Trinity.fasta -p 1 -d 0 -b 3 -T 27 -M 0 Started: Mon Jul 29 12:16:49 2019 ================================================================ Output ---------------------------------------------------------------- total seq: 434877 longest and shortest : 30993 and 178 Total letters: 383643405 Sequences have been sorted Approximated minimal memory consumption: Sequence : 444M Buffer : 27 X 19M = 530M Table : 2 X 23M = 47M Miscellaneous : 9M Total : 1031M Table limit with the given memory limit: Max number of representatives: 458974 Max number of word counting entries: 102924574 # comparing sequences from 0 to 1037 .---------- new table with 731 representatives # comparing sequences from 1037 to 15997 ..................... ---------- 13994 remaining sequences to the next cycle ---------- new table with 691 representatives # comparing sequences from 2003 to 16929 .................... ---------- 13991 remaining sequences to the next cycle ---------- new table with 667 representatives # comparing sequences from 2938 to 17832 ..................... ---------- 13601 remaining sequences to the next cycle ---------- new table with 936 representatives # comparing sequences from 4231 to 19080 .................... ---------- 13477 remaining sequences to the next cycle ---------- new table with 999 representatives # comparing sequences from 5603 to 20405 ...................... ---------- 13118 remaining sequences to the next cycle ---------- new table with 1239 representatives # comparing sequences from 7287 to 22031 ...................... ---------- 12924 remaining sequences to the next cycle ---------- new table with 1361 representatives # comparing sequences from 9107 to 23788 ..................... .......... 10000 finished 7269 clusters ---------- 12900 remaining sequences to the next cycle ---------- new table with 1319 representatives # comparing sequences from 10888 to 25508 ....................... ---------- 12478 remaining sequences to the next cycle ---------- new table with 1627 representatives # comparing sequences from 13030 to 27576 ..................... ---------- 12085 remaining sequences to the next cycle ---------- new table with 1902 representatives # comparing sequences from 15491 to 29952 ....................... ---------- 11823 remaining sequences to the next cycle ---------- new table with 2081 representatives # comparing sequences from 18129 to 32499 ..................... .......... 20000 finished 15059 clusters . ---------- 11385 remaining sequences to the next cycle ---------- new table with 2409 representatives # comparing sequences from 21114 to 35381 ...................... ---------- 11252 remaining sequences to the next cycle ---------- new table with 2446 representatives # comparing sequences from 24129 to 38292 ...................... ---------- 10812 remaining sequences to the next cycle ---------- new table with 2810 representatives # comparing sequences from 27480 to 41528 ...................... .......... 30000 finished 23282 clusters ---------- 10918 remaining sequences to the next cycle ---------- new table with 2571 representatives # comparing sequences from 30610 to 44550 ...................... ---------- 10846 remaining sequences to the next cycle ---------- new table with 2621 representatives # comparing sequences from 33704 to 47537 ..................... ---------- 10406 remaining sequences to the next cycle ---------- new table with 2919 representatives # comparing sequences from 37131 to 50846 ...................... .......... 40000 finished 31793 clusters 100.0% ---------- 9918 remaining sequences to the next cycle ---------- new table with 3263 representatives # comparing sequences from 40928 to 54512 ...................... ---------- 11512 remaining sequences to the next cycle ---------- new table with 1756 representatives # comparing sequences from 43000 to 56513 ..................... ---------- 10661 remaining sequences to the next cycle ---------- new table with 2467 representatives # comparing sequences from 45852 to 59266 ..................... ---------- 10173 remaining sequences to the next cycle ---------- new table with 2826 representatives # comparing sequences from 49093 to 62395 ..................... .......... 50000 finished 40429 clusters .. ---------- 10062 remaining sequences to the next cycle ---------- new table with 2836 representatives # comparing sequences from 52333 to 65524 ..................... ---------- 9794 remaining sequences to the next cycle ---------- new table with 2979 representatives # comparing sequences from 55730 to 68804 ....................... ---------- 9668 remaining sequences to the next cycle ---------- new table with 3025 representatives # comparing sequences from 59136 to 72092 ..................... .......... 60000 finished 49257 clusters .. ---------- 9442 remaining sequences to the next cycle ---------- new table with 3130 representatives # comparing sequences from 62650 to 75485 ....................... ---------- 9286 remaining sequences to the next cycle ---------- new table with 3181 representatives # comparing sequences from 66199 to 78912 ...................... ---------- 8920 remaining sequences to the next cycle ---------- new table with 3412 representatives # comparing sequences from 69992 to 82574 ..................... .......... 70000 finished 58211 clusters ... ---------- 8732 remaining sequences to the next cycle ---------- new table with 3468 representatives # comparing sequences from 73842 to 86291 ....................... ---------- 8305 remaining sequences to the next cycle ---------- new table with 3751 representatives # comparing sequences from 77986 to 90292 ....................... .......... 80000 finished 67249 clusters .. ---------- 8114 remaining sequences to the next cycle ---------- new table with 3791 representatives # comparing sequences from 82178 to 94340 ....................... ---------- 7623 remaining sequences to the next cycle ---------- new table with 4172 representatives # comparing sequences from 86717 to 98722 ........................ .......... 90000 finished 76393 clusters . ---------- 7582 remaining sequences to the next cycle ---------- new table with 4052 representatives # comparing sequences from 91140 to 102993 ........................ ---------- 7221 remaining sequences to the next cycle ---------- new table with 4279 representatives # comparing sequences from 95772 to 107465 ....................... ---------- 7467 remaining sequences to the next cycle ---------- new table with 3928 representatives # comparing sequences from 99998 to 111545 .................... .......... 100000 finished 85647 clusters .... ---------- 7115 remaining sequences to the next cycle ---------- new table with 4142 representatives # comparing sequences from 104430 to 115824 ......................... ---------- 6646 remaining sequences to the next cycle ---------- new table with 4376 representatives # comparing sequences from 109178 to 120409 ..................... .......... 110000 finished 94953 clusters .... ---------- 6113 remaining sequences to the next cycle ---------- new table with 4834 representatives # comparing sequences from 114296 to 125350 ...................... ---------- 6411 remaining sequences to the next cycle ---------- new table with 4333 representatives # comparing sequences from 118939 to 129833 ...................... .......... 120000 finished 104335 clusters .... ---------- 5707 remaining sequences to the next cycle ---------- new table with 4889 representatives # comparing sequences from 124126 to 134841 ........................ ---------- 5521 remaining sequences to the next cycle ---------- new table with 4919 representatives # comparing sequences from 129320 to 139856 ..................... .......... 130000 finished 113777 clusters .... ---------- 5139 remaining sequences to the next cycle ---------- new table with 5116 representatives # comparing sequences from 134717 to 145067 ....................... .......... 140000 finished 123240 clusters ---------- 4752 remaining sequences to the next cycle ---------- new table with 5288 representatives # comparing sequences from 140315 to 150472 .......................... 100.0% ---------- 4345 remaining sequences to the next cycle ---------- new table with 5538 representatives # comparing sequences from 146127 to 156083 ........................ .......... 150000 finished 132784 clusters . ---------- 4880 remaining sequences to the next cycle ---------- new table with 4845 representatives # comparing sequences from 151203 to 160984 ........................ ---------- 4096 remaining sequences to the next cycle ---------- new table with 5437 representatives # comparing sequences from 156888 to 166473 ...................... .......... 160000 finished 142322 clusters .. ---------- 3759 remaining sequences to the next cycle ---------- new table with 5562 representatives # comparing sequences from 162714 to 172098 ......................... ---------- 4251 remaining sequences to the next cycle ---------- new table with 4876 representatives # comparing sequences from 167847 to 177054 ....................... .......... 170000 finished 151844 clusters .. ---------- 4418 remaining sequences to the next cycle ---------- new table with 4546 representatives # comparing sequences from 172636 to 181678 .................... ---------- 3920 remaining sequences to the next cycle ---------- new table with 4891 representatives # comparing sequences from 177758 to 186624 ..................... .......... 180000 finished 161384 clusters ... 100.0% ---------- 3505 remaining sequences to the next cycle ---------- new table with 5120 representatives # comparing sequences from 183119 to 191800 ........................ ---------- 2937 remaining sequences to the next cycle ---------- new table with 5507 representatives # comparing sequences from 188863 to 197346 ...................... .......... 190000 finished 170952 clusters .... 100.0% ---------- 3127 remaining sequences to the next cycle ---------- new table with 5098 representatives # comparing sequences from 194219 to 202517 ......................... ---------- 2591 remaining sequences to the next cycle ---------- new table with 5460 representatives # comparing sequences from 199926 to 208027 ..................... .......... 200000 finished 180494 clusters ..... ---------- 2350 remaining sequences to the next cycle ---------- new table with 5500 representatives # comparing sequences from 205677 to 213580 ....................... .......... 210000 finished 190068 clusters . ---------- 2313 remaining sequences to the next cycle ---------- new table with 5370 representatives # comparing sequences from 211267 to 218977 ........................ ---------- 3846 remaining sequences to the next cycle ---------- new table with 3701 representatives # comparing sequences from 215131 to 222708 ........................ 100.0% ---------- 2831 remaining sequences to the next cycle ---------- new table with 4600 representatives # comparing sequences from 219877 to 227290 ..................... .......... 220000 finished 199712 clusters .... ---------- 2370 remaining sequences to the next cycle ---------- new table with 4849 representatives # comparing sequences from 224920 to 232159 ......................... .......... 230000 finished 209351 clusters ---------- 2059 remaining sequences to the next cycle ---------- new table with 5005 representatives # comparing sequences from 230100 to 237161 ........................ ---------- 2617 remaining sequences to the next cycle ---------- new table with 4268 representatives # comparing sequences from 234544 to 241452 ........................ 100.0% ---------- 1997 remaining sequences to the next cycle ---------- new table with 4721 representatives # comparing sequences from 239455 to 246193 ..................... .......... 240000 finished 218976 clusters ... ---------- 2466 remaining sequences to the next cycle ---------- new table with 4135 representatives # comparing sequences from 243727 to 250318 ......................... ---------- 1937 remaining sequences to the next cycle ---------- new table with 4477 representatives # comparing sequences from 248381 to 254811 ...................... .......... 250000 finished 228599 clusters .. ---------- 2395 remaining sequences to the next cycle ---------- new table with 3881 representatives # comparing sequences from 252416 to 258707 ........................ ---------- 2555 remaining sequences to the next cycle ---------- new table with 3588 representatives # comparing sequences from 256152 to 262314 ...................... ---------- 2859 remaining sequences to the next cycle ---------- new table with 3191 representatives # comparing sequences from 259455 to 265504 ..................... .......... 260000 finished 238223 clusters .. ---------- 2613 remaining sequences to the next cycle ---------- new table with 3286 representatives # comparing sequences from 262891 to 268821 ....................... ---------- 2615 remaining sequences to the next cycle ---------- new table with 3177 representatives # comparing sequences from 266206 to 272022 ....................... .......... 270000 finished 247831 clusters ---------- 1982 remaining sequences to the next cycle ---------- new table with 3700 representatives # comparing sequences from 270040 to 275724 ........................ ---------- 1643 remaining sequences to the next cycle ---------- new table with 3899 representatives # comparing sequences from 274081 to 279625 ........................ ---------- 1537 remaining sequences to the next cycle ---------- new table with 3861 representatives # comparing sequences from 278088 to 283494 ..................... .......... 280000 finished 257497 clusters . ---------- 2070 remaining sequences to the next cycle ---------- new table with 3247 representatives # comparing sequences from 281424 to 286715 ....................... ---------- 1521 remaining sequences to the next cycle ---------- new table with 3648 representatives # comparing sequences from 285194 to 290355 ....................... ---------- 1981 remaining sequences to the next cycle ---------- new table with 3081 representatives # comparing sequences from 288374 to 293425 ...................... .......... 290000 finished 267175 clusters . ---------- 1648 remaining sequences to the next cycle ---------- new table with 3279 representatives # comparing sequences from 291777 to 296711 ........................ ---------- 1404 remaining sequences to the next cycle ---------- new table with 3404 representatives # comparing sequences from 295307 to 300119 ...................... 100.0% ---------- 1241 remaining sequences to the next cycle ---------- new table with 3452 representatives # comparing sequences from 298878 to 303567 .................... .......... 300000 finished 276814 clusters .. ---------- 1454 remaining sequences to the next cycle ---------- new table with 3106 representatives # comparing sequences from 302113 to 306691 ..................... 100.0% ---------- 1930 remaining sequences to the next cycle ---------- new table with 2542 representatives # comparing sequences from 304761 to 309247 ..................... ---------- 1663 remaining sequences to the next cycle ---------- new table with 2720 representatives # comparing sequences from 307584 to 311973 ....................... .......... 310000 finished 286430 clusters ---------- 1867 remaining sequences to the next cycle ---------- new table with 2422 representatives # comparing sequences from 310106 to 314408 ..................... ---------- 1725 remaining sequences to the next cycle ---------- new table with 2497 representatives # comparing sequences from 312683 to 316896 ...................... 100.0% ---------- 1742 remaining sequences to the next cycle ---------- new table with 2414 representatives # comparing sequences from 315154 to 319282 ...................... ---------- 2121 remaining sequences to the next cycle ---------- new table with 1968 representatives # comparing sequences from 317161 to 321220 ..................... ---------- 1686 remaining sequences to the next cycle ---------- new table with 2304 representatives # comparing sequences from 319534 to 323511 ..................... .......... 320000 finished 296179 clusters . ---------- 1529 remaining sequences to the next cycle ---------- new table with 2389 representatives # comparing sequences from 321982 to 325874 ...................... ---------- 1549 remaining sequences to the next cycle ---------- new table with 2261 representatives # comparing sequences from 324325 to 328137 ................... ---------- 1543 remaining sequences to the next cycle ---------- new table with 2193 representatives # comparing sequences from 326594 to 330327 ...................... ---------- 1409 remaining sequences to the next cycle ---------- new table with 2255 representatives # comparing sequences from 328918 to 332571 .................... .......... 330000 finished 305853 clusters ---------- 2025 remaining sequences to the next cycle ---------- new table with 1569 representatives # comparing sequences from 330546 to 334143 ..................... ---------- 1735 remaining sequences to the next cycle ---------- new table with 1815 representatives # comparing sequences from 332408 to 335941 ..................... ---------- 1576 remaining sequences to the next cycle ---------- new table with 1908 representatives # comparing sequences from 334365 to 337830 .................... ---------- 1473 remaining sequences to the next cycle ---------- new table with 1940 representatives # comparing sequences from 336357 to 339754 ..................... ---------- 1406 remaining sequences to the next cycle ---------- new table with 1943 representatives # comparing sequences from 338348 to 341676 ..................... .......... 340000 finished 315608 clusters ---------- 1406 remaining sequences to the next cycle ---------- new table with 1882 representatives # comparing sequences from 340270 to 343532 ...................... ---------- 1251 remaining sequences to the next cycle ---------- new table with 1947 representatives # comparing sequences from 342281 to 345473 ...................... ---------- 1163 remaining sequences to the next cycle ---------- new table with 1977 representatives # comparing sequences from 344310 to 347433 ..................... ---------- 1191 remaining sequences to the next cycle ---------- new table with 1894 representatives # comparing sequences from 346242 to 349298 ..................... ---------- 1223 remaining sequences to the next cycle ---------- new table with 1784 representatives # comparing sequences from 348075 to 351068 ..................... ---------- 1278 remaining sequences to the next cycle ---------- new table with 1674 representatives # comparing sequences from 349790 to 352724 .................. .......... 350000 finished 325354 clusters . ---------- 1294 remaining sequences to the next cycle ---------- new table with 1592 representatives # comparing sequences from 351430 to 354307 ..................... ---------- 1432 remaining sequences to the next cycle ---------- new table with 1410 representatives # comparing sequences from 352875 to 355702 ..................... ---------- 1214 remaining sequences to the next cycle ---------- new table with 1579 representatives # comparing sequences from 354488 to 357260 ...................... ---------- 1162 remaining sequences to the next cycle ---------- new table with 1584 representatives # comparing sequences from 356098 to 358814 ..................... ---------- 1244 remaining sequences to the next cycle ---------- new table with 1426 representatives # comparing sequences from 357570 to 360235 ..................... 100.0% ---------- 1151 remaining sequences to the next cycle ---------- new table with 1468 representatives # comparing sequences from 359084 to 361697 ..................... .......... 360000 finished 335106 clusters ---------- 1476 remaining sequences to the next cycle ---------- new table with 1109 representatives # comparing sequences from 360221 to 362795 ..................... 100.0% ---------- 1207 remaining sequences to the next cycle ---------- new table with 1322 representatives # comparing sequences from 361588 to 364115 ..................... ---------- 1092 remaining sequences to the next cycle ---------- new table with 1407 representatives # comparing sequences from 363023 to 365500 ..................... ---------- 1053 remaining sequences to the next cycle ---------- new table with 1396 representatives # comparing sequences from 364447 to 366875 ..................... ---------- 1135 remaining sequences to the next cycle ---------- new table with 1260 representatives # comparing sequences from 365740 to 368124 ..................... ---------- 1097 remaining sequences to the next cycle ---------- new table with 1260 representatives # comparing sequences from 367027 to 369366 ..................... ---------- 1117 remaining sequences to the next cycle ---------- new table with 1199 representatives # comparing sequences from 368249 to 370546 .................... ---------- 1127 remaining sequences to the next cycle ---------- new table with 1135 representatives # comparing sequences from 369419 to 371676 ..................... .......... 370000 finished 344870 clusters ---------- 1124 remaining sequences to the next cycle ---------- new table with 1111 representatives # comparing sequences from 370552 to 372770 ..................... ---------- 1022 remaining sequences to the next cycle ---------- new table with 1179 representatives # comparing sequences from 371748 to 373924 ..................... ---------- 1092 remaining sequences to the next cycle ---------- new table with 1067 representatives # comparing sequences from 372832 to 374971 .................... ---------- 1097 remaining sequences to the next cycle ---------- new table with 1029 representatives # comparing sequences from 373874 to 375977 ................... 100.0% ---------- 1078 remaining sequences to the next cycle ---------- new table with 997 representatives # comparing sequences from 374899 to 376967 .................... ---------- 977 remaining sequences to the next cycle ---------- new table with 1069 representatives # comparing sequences from 375990 to 378020 .................... ---------- 903 remaining sequences to the next cycle ---------- new table with 1098 representatives # comparing sequences from 377117 to 379108 .................... ---------- 1041 remaining sequences to the next cycle ---------- new table with 932 representatives # comparing sequences from 378067 to 380025 .................... 100.0% ---------- 924 remaining sequences to the next cycle ---------- new table with 1014 representatives # comparing sequences from 379101 to 381024 ..................... .......... 380000 finished 354659 clusters ---------- 901 remaining sequences to the next cycle ---------- new table with 993 representatives # comparing sequences from 380123 to 382011 ..................... ---------- 837 remaining sequences to the next cycle ---------- new table with 1017 representatives # comparing sequences from 381174 to 383025 ..................... 100.0% ---------- 986 remaining sequences to the next cycle ---------- new table with 858 representatives # comparing sequences from 382039 to 383861 .................... ---------- 873 remaining sequences to the next cycle ---------- new table with 927 representatives # comparing sequences from 382988 to 384777 .................... ---------- 950 remaining sequences to the next cycle ---------- new table with 815 representatives # comparing sequences from 383827 to 385587 ..................... ---------- 954 remaining sequences to the next cycle ---------- new table with 802 representatives # comparing sequences from 384633 to 386365 .................... ---------- 864 remaining sequences to the next cycle ---------- new table with 854 representatives # comparing sequences from 385501 to 387203 ..................... ---------- 906 remaining sequences to the next cycle ---------- new table with 773 representatives # comparing sequences from 386297 to 387972 ..................... 100.0% ---------- 834 remaining sequences to the next cycle ---------- new table with 825 representatives # comparing sequences from 387138 to 388784 .................... ---------- 890 remaining sequences to the next cycle ---------- new table with 727 representatives # comparing sequences from 387894 to 389514 ..................... ---------- 1078 remaining sequences to the next cycle ---------- new table with 538 representatives # comparing sequences from 388436 to 390037 ..................... ---------- 956 remaining sequences to the next cycle ---------- new table with 626 representatives # comparing sequences from 389081 to 390660 .................... ---------- 870 remaining sequences to the next cycle ---------- new table with 703 representatives # comparing sequences from 389790 to 391344 .................. ---------- 797 remaining sequences to the next cycle ---------- new table with 740 representatives # comparing sequences from 390547 to 392075 ................... ---------- 857 remaining sequences to the next cycle ---------- new table with 656 representatives # comparing sequences from 391218 to 392723 .................... ---------- 768 remaining sequences to the next cycle ---------- new table with 716 representatives # comparing sequences from 391955 to 393435 .................... ---------- 854 remaining sequences to the next cycle ---------- new table with 617 representatives # comparing sequences from 392581 to 394039 ..................... ---------- 844 remaining sequences to the next cycle ---------- new table with 597 representatives # comparing sequences from 393195 to 394632 ................... ---------- 761 remaining sequences to the next cycle ---------- new table with 667 representatives # comparing sequences from 393871 to 395285 ..................... ---------- 810 remaining sequences to the next cycle ---------- new table with 591 representatives # comparing sequences from 394475 to 395868 ..................... 100.0% ---------- 733 remaining sequences to the next cycle ---------- new table with 655 representatives # comparing sequences from 395135 to 396505 ................... ---------- 699 remaining sequences to the next cycle ---------- new table with 652 representatives # comparing sequences from 395806 to 397153 ..................... ---------- 797 remaining sequences to the next cycle ---------- new table with 548 representatives # comparing sequences from 396356 to 397684 ................. ---------- 693 remaining sequences to the next cycle ---------- new table with 609 representatives # comparing sequences from 396991 to 398297 .................... 100.0% ---------- 786 remaining sequences to the next cycle ---------- new table with 519 representatives # comparing sequences from 397511 to 398799 ..................... ---------- 784 remaining sequences to the next cycle ---------- new table with 486 representatives # comparing sequences from 398015 to 399286 ................... ---------- 777 remaining sequences to the next cycle ---------- new table with 488 representatives # comparing sequences from 398509 to 399763 ..................... ---------- 694 remaining sequences to the next cycle ---------- new table with 550 representatives # comparing sequences from 399069 to 400303 .................... ---------- 737 remaining sequences to the next cycle ---------- new table with 486 representatives # comparing sequences from 399566 to 400783 ..................... .......... 400000 finished 374258 clusters ---------- 682 remaining sequences to the next cycle ---------- new table with 531 representatives # comparing sequences from 400101 to 401300 .................... 100.0% ---------- 658 remaining sequences to the next cycle ---------- new table with 529 representatives # comparing sequences from 400642 to 401822 .................... ---------- 659 remaining sequences to the next cycle ---------- new table with 517 representatives # comparing sequences from 401163 to 402325 .................... ---------- 713 remaining sequences to the next cycle ---------- new table with 442 representatives # comparing sequences from 401612 to 402759 ..................... ---------- 625 remaining sequences to the next cycle ---------- new table with 507 representatives # comparing sequences from 402134 to 403263 .................... ---------- 607 remaining sequences to the next cycle ---------- new table with 521 representatives # comparing sequences from 402656 to 403767 ..................... ---------- 667 remaining sequences to the next cycle ---------- new table with 432 representatives # comparing sequences from 403100 to 404195 ................... ---------- 595 remaining sequences to the next cycle ---------- new table with 486 representatives # comparing sequences from 403600 to 404678 .................. ---------- 656 remaining sequences to the next cycle ---------- new table with 421 representatives # comparing sequences from 404022 to 405085 ................. ---------- 659 remaining sequences to the next cycle ---------- new table with 391 representatives # comparing sequences from 404426 to 405476 .................... ---------- 642 remaining sequences to the next cycle ---------- new table with 400 representatives # comparing sequences from 404834 to 405869 ................... ---------- 691 remaining sequences to the next cycle ---------- new table with 344 representatives # comparing sequences from 405178 to 406202 .................. ---------- 594 remaining sequences to the next cycle ---------- new table with 419 representatives # comparing sequences from 405608 to 406617 .................... ---------- 543 remaining sequences to the next cycle ---------- new table with 455 representatives # comparing sequences from 406074 to 407067 .................... ---------- 607 remaining sequences to the next cycle ---------- new table with 385 representatives # comparing sequences from 406460 to 407439 .................... ---------- 628 remaining sequences to the next cycle ---------- new table with 346 representatives # comparing sequences from 406811 to 407778 .................... 100.0% ---------- 536 remaining sequences to the next cycle ---------- new table with 415 representatives # comparing sequences from 407242 to 408194 .................... ---------- 519 remaining sequences to the next cycle ---------- new table with 432 representatives # comparing sequences from 407675 to 408613 ..................... ---------- 527 remaining sequences to the next cycle ---------- new table with 408 representatives # comparing sequences from 408086 to 409009 .................... ---------- 483 remaining sequences to the next cycle ---------- new table with 428 representatives # comparing sequences from 408526 to 409434 ................... ---------- 583 remaining sequences to the next cycle ---------- new table with 319 representatives # comparing sequences from 408851 to 409748 .................... 100.0% ---------- 565 remaining sequences to the next cycle ---------- new table with 331 representatives # comparing sequences from 409183 to 410069 ................... ---------- 517 remaining sequences to the next cycle ---------- new table with 359 representatives # comparing sequences from 409552 to 410425 ................... 100.0% ---------- 543 remaining sequences to the next cycle ---------- new table with 322 representatives # comparing sequences from 409882 to 410743 ..................... .......... 410000 finished 384078 clusters ---------- 546 remaining sequences to the next cycle ---------- new table with 311 representatives # comparing sequences from 410197 to 411048 ................... ---------- 509 remaining sequences to the next cycle ---------- new table with 342 representatives # comparing sequences from 410539 to 411378 ................... ---------- 468 remaining sequences to the next cycle ---------- new table with 357 representatives # comparing sequences from 410910 to 411736 ..................... ---------- 503 remaining sequences to the next cycle ---------- new table with 312 representatives # comparing sequences from 411233 to 412048 ................... 100.0% ---------- 553 remaining sequences to the next cycle ---------- new table with 260 representatives # comparing sequences from 411495 to 412301 ................... ---------- 541 remaining sequences to the next cycle ---------- new table with 265 representatives # comparing sequences from 411760 to 412557 ..................... ---------- 534 remaining sequences to the next cycle ---------- new table with 261 representatives # comparing sequences from 412023 to 412811 .................... ---------- 454 remaining sequences to the next cycle ---------- new table with 323 representatives # comparing sequences from 412357 to 413133 .................... ---------- 434 remaining sequences to the next cycle ---------- new table with 331 representatives # comparing sequences from 412699 to 413463 .................... ---------- 432 remaining sequences to the next cycle ---------- new table with 332 representatives # comparing sequences from 413031 to 413784 ................... ---------- 504 remaining sequences to the next cycle ---------- new table with 247 representatives # comparing sequences from 413280 to 414024 ................... ---------- 436 remaining sequences to the next cycle ---------- new table with 300 representatives # comparing sequences from 413588 to 414322 ................... ---------- 452 remaining sequences to the next cycle ---------- new table with 274 representatives # comparing sequences from 413870 to 414594 ..................... ---------- 468 remaining sequences to the next cycle ---------- new table with 254 representatives # comparing sequences from 414126 to 414841 ................... ---------- 430 remaining sequences to the next cycle ---------- new table with 285 representatives # comparing sequences from 414411 to 415116 .................. ---------- 414 remaining sequences to the next cycle ---------- new table with 287 representatives # comparing sequences from 414702 to 415397 ................... 100.0% ---------- 429 remaining sequences to the next cycle ---------- new table with 256 representatives # comparing sequences from 414968 to 415654 ................... ---------- 383 remaining sequences to the next cycle ---------- new table with 290 representatives # comparing sequences from 415271 to 415947 .................... ---------- 381 remaining sequences to the next cycle ---------- new table with 292 representatives # comparing sequences from 415566 to 416231 .................... ---------- 435 remaining sequences to the next cycle ---------- new table with 230 representatives # comparing sequences from 415796 to 416453 ..................... ---------- 426 remaining sequences to the next cycle ---------- new table with 226 representatives # comparing sequences from 416027 to 416677 ................... ---------- 406 remaining sequences to the next cycle ---------- new table with 236 representatives # comparing sequences from 416271 to 416912 .................. ---------- 384 remaining sequences to the next cycle ---------- new table with 248 representatives # comparing sequences from 416528 to 417160 .................... ---------- 407 remaining sequences to the next cycle ---------- new table with 221 representatives # comparing sequences from 416753 to 417377 .................... ---------- 383 remaining sequences to the next cycle ---------- new table with 241 representatives # comparing sequences from 416994 to 417610 ..................... ---------- 410 remaining sequences to the next cycle ---------- new table with 206 representatives # comparing sequences from 417200 to 417809 .................. ---------- 397 remaining sequences to the next cycle ---------- new table with 201 representatives # comparing sequences from 417412 to 418014 ................... ---------- 386 remaining sequences to the next cycle ---------- new table with 208 representatives # comparing sequences from 417628 to 418222 .................... ---------- 333 remaining sequences to the next cycle ---------- new table with 247 representatives # comparing sequences from 417889 to 418474 ..................... ---------- 377 remaining sequences to the next cycle ---------- new table with 205 representatives # comparing sequences from 418097 to 418675 .................... ---------- 380 remaining sequences to the next cycle ---------- new table with 197 representatives # comparing sequences from 418295 to 418866 .................... ---------- 386 remaining sequences to the next cycle ---------- new table with 185 representatives # comparing sequences from 418480 to 419045 ................... ---------- 349 remaining sequences to the next cycle ---------- new table with 215 representatives # comparing sequences from 418696 to 419253 .................... ---------- 327 remaining sequences to the next cycle ---------- new table with 224 representatives # comparing sequences from 418926 to 419476 ..................... ---------- 347 remaining sequences to the next cycle ---------- new table with 196 representatives # comparing sequences from 419129 to 419672 .................... ---------- 334 remaining sequences to the next cycle ---------- new table with 202 representatives # comparing sequences from 419338 to 419873 ................... ---------- 345 remaining sequences to the next cycle ---------- new table with 190 representatives # comparing sequences from 419528 to 420057 ................... ---------- 353 remaining sequences to the next cycle ---------- new table with 176 representatives # comparing sequences from 419704 to 420227 ................... ---------- 350 remaining sequences to the next cycle ---------- new table with 173 representatives # comparing sequences from 419877 to 420394 ................... .......... 420000 finished 393893 clusters ---------- 346 remaining sequences to the next cycle ---------- new table with 170 representatives # comparing sequences from 420048 to 420559 .................. ---------- 300 remaining sequences to the next cycle ---------- new table with 206 representatives # comparing sequences from 420259 to 420763 ................... ---------- 312 remaining sequences to the next cycle ---------- new table with 183 representatives # comparing sequences from 420451 to 420948 ................... ---------- 281 remaining sequences to the next cycle ---------- new table with 209 representatives # comparing sequences from 420667 to 421157 .................... ---------- 282 remaining sequences to the next cycle ---------- new table with 205 representatives # comparing sequences from 420875 to 421357 .................... ---------- 382 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 420975 to 421454 ..................... ---------- 324 remaining sequences to the next cycle ---------- new table with 155 representatives # comparing sequences from 421130 to 421604 ................... ---------- 374 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 421230 to 421700 ................... ---------- 303 remaining sequences to the next cycle ---------- new table with 165 representatives # comparing sequences from 421397 to 421861 ................... ---------- 352 remaining sequences to the next cycle ---------- new table with 101 representatives # comparing sequences from 421509 to 421969 .................... ---------- 233 remaining sequences to the next cycle ---------- new table with 222 representatives # comparing sequences from 421736 to 422189 .................... 100.0% ---------- 339 remaining sequences to the next cycle ---------- new table with 113 representatives # comparing sequences from 421850 to 422299 .................... ---------- 248 remaining sequences to the next cycle ---------- new table with 197 representatives # comparing sequences from 422051 to 422493 ................... ---------- 264 remaining sequences to the next cycle ---------- new table with 177 representatives # comparing sequences from 422229 to 422665 .................... ---------- 260 remaining sequences to the next cycle ---------- new table with 176 representatives # comparing sequences from 422405 to 422835 ................... ---------- 271 remaining sequences to the next cycle ---------- new table with 159 representatives # comparing sequences from 422564 to 422988 ................... 100.0% ---------- 264 remaining sequences to the next cycle ---------- new table with 159 representatives # comparing sequences from 422724 to 423143 .................... ---------- 268 remaining sequences to the next cycle ---------- new table with 144 representatives # comparing sequences from 422875 to 423288 .................... ---------- 229 remaining sequences to the next cycle ---------- new table with 179 representatives # comparing sequences from 423059 to 423466 ................... ---------- 226 remaining sequences to the next cycle ---------- new table with 173 representatives # comparing sequences from 423240 to 423641 .................. ---------- 255 remaining sequences to the next cycle ---------- new table with 142 representatives # comparing sequences from 423386 to 423782 .................... ---------- 259 remaining sequences to the next cycle ---------- new table with 136 representatives # comparing sequences from 423523 to 423914 ................... 100.0% ---------- 238 remaining sequences to the next cycle ---------- new table with 153 representatives # comparing sequences from 423676 to 424062 .................... ---------- 236 remaining sequences to the next cycle ---------- new table with 150 representatives # comparing sequences from 423826 to 424207 ................... ---------- 244 remaining sequences to the next cycle ---------- new table with 137 representatives # comparing sequences from 423963 to 424339 ..................... ---------- 251 remaining sequences to the next cycle ---------- new table with 125 representatives # comparing sequences from 424088 to 424460 .................. ---------- 240 remaining sequences to the next cycle ---------- new table with 127 representatives # comparing sequences from 424220 to 424587 ................. ---------- 231 remaining sequences to the next cycle ---------- new table with 129 representatives # comparing sequences from 424356 to 424718 ................. ---------- 230 remaining sequences to the next cycle ---------- new table with 126 representatives # comparing sequences from 424488 to 424846 .................... 100.0% ---------- 232 remaining sequences to the next cycle ---------- new table with 124 representatives # comparing sequences from 424614 to 424967 .................... ---------- 203 remaining sequences to the next cycle ---------- new table with 145 representatives # comparing sequences from 424764 to 425112 .................... ---------- 229 remaining sequences to the next cycle ---------- new table with 119 representatives # comparing sequences from 424883 to 425227 .................... ---------- 211 remaining sequences to the next cycle ---------- new table with 133 representatives # comparing sequences from 425016 to 425356 ................... ---------- 228 remaining sequences to the next cycle ---------- new table with 112 representatives # comparing sequences from 425128 to 425464 .................... ---------- 225 remaining sequences to the next cycle ---------- new table with 109 representatives # comparing sequences from 425239 to 425571 ................... ---------- 224 remaining sequences to the next cycle ---------- new table with 108 representatives # comparing sequences from 425347 to 425675 .................. ---------- 216 remaining sequences to the next cycle ---------- new table with 110 representatives # comparing sequences from 425459 to 425783 .................. ---------- 208 remaining sequences to the next cycle ---------- new table with 112 representatives # comparing sequences from 425575 to 425895 ................ ---------- 201 remaining sequences to the next cycle ---------- new table with 114 representatives # comparing sequences from 425694 to 426010 ................... ---------- 199 remaining sequences to the next cycle ---------- new table with 112 representatives # comparing sequences from 425811 to 426123 .................. ---------- 191 remaining sequences to the next cycle ---------- new table with 109 representatives # comparing sequences from 425932 to 426240 .................... ---------- 191 remaining sequences to the next cycle ---------- new table with 110 representatives # comparing sequences from 426049 to 426353 ................... ---------- 201 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 426152 to 426452 ................... ---------- 180 remaining sequences to the next cycle ---------- new table with 120 representatives # comparing sequences from 426272 to 426568 ................... ---------- 196 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 426372 to 426665 .................... ---------- 193 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 426472 to 426761 ................... ---------- 188 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 426573 to 426859 ................... ---------- 186 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 426673 to 426955 ................... ---------- 182 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 426773 to 427052 ................... ---------- 174 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 426878 to 427153 ................... ---------- 172 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 426981 to 427253 ..................... ---------- 155 remaining sequences to the next cycle ---------- new table with 113 representatives # comparing sequences from 427098 to 427366 .................... ---------- 154 remaining sequences to the next cycle ---------- new table with 111 representatives # comparing sequences from 427212 to 427476 .................. ---------- 160 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 427316 to 427576 ................... ---------- 160 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 427416 to 427673 ................... ---------- 150 remaining sequences to the next cycle ---------- new table with 106 representatives # comparing sequences from 427523 to 427776 ................... ---------- 153 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 427623 to 427873 ................... ---------- 150 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 427723 to 427969 ................... ---------- 146 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 427823 to 428066 ................... ---------- 143 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 427923 to 428162 ..................... ---------- 139 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 428023 to 428259 .................... ---------- 135 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 428124 to 428356 ................... ---------- 130 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 428226 to 428455 .................. ---------- 123 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 428332 to 428557 ................... ---------- 123 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 428434 to 428656 .................. ---------- 122 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 428534 to 428752 .................... ---------- 115 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 428637 to 428852 .................... ---------- 113 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 428739 to 428950 ................... ---------- 109 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 428841 to 429049 ................... ---------- 108 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 428941 to 429145 .................... ---------- 104 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 429041 to 429242 .................. ---------- 101 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 429141 to 429338 ................... ---------- 97 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 429241 to 429435 ................... ---------- 94 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 429341 to 429531 ................... ---------- 90 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 429441 to 429628 ................. ---------- 85 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 429543 to 429726 ................. ---------- 80 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 429646 to 429826 ................. ---------- 74 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 429752 to 429928 .................. ---------- 73 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 429855 to 430028 .................. ---------- 70 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 429958 to 430127 .................. .......... 430000 finished 403696 clusters ---------- 63 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 430064 to 430229 .................. ---------- 61 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 430168 to 430330 .................. ---------- 62 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 430268 to 430426 .................... ---------- 58 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 430368 to 430523 .................... ---------- 55 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 430468 to 430620 ................... ---------- 52 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 430568 to 430716 ................... ---------- 48 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 430668 to 430813 .................. ---------- 45 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 430768 to 430909 ................. ---------- 40 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 430869 to 431007 .................... ---------- 35 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 430972 to 431106 .................... ---------- 31 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 431075 to 431206 .................. ---------- 26 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 431180 to 431307 .................. ---------- 26 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 431281 to 431405 ................. ---------- 21 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 431384 to 431504 ................. ---------- 20 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 431484 to 431601 .................... ---------- 17 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 431584 to 431697 ................... ---------- 13 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 431684 to 431794 .................. ---------- 10 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 431784 to 431890 .................. ---------- 5 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 431885 to 431988 ................. ---------- 3 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 431985 to 432084 .....................---------- new table with 99 representatives # comparing sequences from 432084 to 432180 ..................---------- new table with 92 representatives # comparing sequences from 432180 to 432273 ...................---------- new table with 89 representatives # comparing sequences from 432273 to 432362 ..................---------- new table with 89 representatives # comparing sequences from 432362 to 432448 ................---------- new table with 83 representatives # comparing sequences from 432448 to 432531 .................---------- new table with 80 representatives # comparing sequences from 432531 to 432611 ...............---------- new table with 75 representatives # comparing sequences from 432611 to 432689 ....................---------- new table with 77 representatives # comparing sequences from 432689 to 432764 ..................---------- new table with 75 representatives # comparing sequences from 432764 to 432836 ..................---------- new table with 72 representatives # comparing sequences from 432836 to 432906 ..................---------- new table with 70 representatives # comparing sequences from 432906 to 432973 .................---------- new table with 67 representatives # comparing sequences from 432973 to 433038 .................---------- new table with 64 representatives # comparing sequences from 433038 to 433101 ................---------- new table with 63 representatives # comparing sequences from 433101 to 433162 ...............---------- new table with 61 representatives # comparing sequences from 433162 to 433221 ...................---------- new table with 59 representatives # comparing sequences from 433221 to 433278 ...................---------- new table with 57 representatives # comparing sequences from 433278 to 433333 ...................---------- new table with 55 representatives # comparing sequences from 433333 to 433386 .................---------- new table with 53 representatives # comparing sequences from 433386 to 433437 .................---------- new table with 51 representatives # comparing sequences from 433437 to 433486 .................---------- new table with 49 representatives # comparing sequences from 433486 to 433533 ...............---------- new table with 46 representatives # comparing sequences from 433533 to 433579 ...............---------- new table with 45 representatives # comparing sequences from 433579 to 433623 .............---------- new table with 39 representatives # comparing sequences from 433623 to 433666 ..............---------- new table with 42 representatives # comparing sequences from 433666 to 433707 .............---------- new table with 38 representatives # comparing sequences from 433707 to 433747 ..............---------- new table with 39 representatives # comparing sequences from 433747 to 433785 ...................---------- new table with 38 representatives # comparing sequences from 433785 to 433822 ..................---------- new table with 37 representatives # comparing sequences from 433822 to 433858 ..................---------- new table with 35 representatives # comparing sequences from 433858 to 433893 ..................---------- new table with 35 representatives # comparing sequences from 433893 to 434877 .....................---------- new table with 969 representatives 434877 finished 408498 clusters Approximated maximum memory consumption: 1152M writing new database writing clustering information program completed ! Total CPU time 5740.04 ================================================================ Program: CD-HIT, V4.8.1 (+OpenMP), Jul 24 2019, 13:13:52 Command: /gscratch/srlab/programs/cd-hit-v4.8.1-2019-0228/cd-hit-est -o EPI123.cdhit -c 0.98 -i /gscratch/srlab/sam/data/P_generosa/transcriptomes/juvenile/EPI123/Trinity.fasta -p 1 -d 0 -b 3 -T 27 -M 0 Started: Mon Jul 29 12:20:39 2019 ================================================================ Output ---------------------------------------------------------------- total seq: 303568 longest and shortest : 23058 and 159 Total letters: 234374927 Sequences have been sorted Approximated minimal memory consumption: Sequence : 276M Buffer : 27 X 17M = 471M Table : 2 X 21M = 43M Miscellaneous : 7M Total : 799M Table limit with the given memory limit: Max number of representatives: 458974 Max number of word counting entries: 80840167 # comparing sequences from 0 to 1225 .---------- new table with 890 representatives # comparing sequences from 1225 to 11650 ..................... ---------- 9402 remaining sequences to the next cycle ---------- new table with 741 representatives # comparing sequences from 2248 to 12638 ..................... ---------- 9441 remaining sequences to the next cycle ---------- new table with 731 representatives # comparing sequences from 3197 to 13554 ..................... ---------- 9150 remaining sequences to the next cycle ---------- new table with 888 representatives # comparing sequences from 4404 to 14720 ..................... ---------- 9133 remaining sequences to the next cycle ---------- new table with 923 representatives # comparing sequences from 5587 to 15862 ...................... ---------- 8778 remaining sequences to the next cycle ---------- new table with 1183 representatives # comparing sequences from 7084 to 17307 ..................... ---------- 8552 remaining sequences to the next cycle ---------- new table with 1290 representatives # comparing sequences from 8755 to 18920 ..................... .......... 10000 finished 7643 clusters ---------- 8353 remaining sequences to the next cycle ---------- new table with 1430 representatives # comparing sequences from 10567 to 20670 ..................... ---------- 8224 remaining sequences to the next cycle ---------- new table with 1525 representatives # comparing sequences from 12446 to 22484 ..................... ---------- 7793 remaining sequences to the next cycle ---------- new table with 1793 representatives # comparing sequences from 14691 to 24652 ...................... ---------- 7780 remaining sequences to the next cycle ---------- new table with 1797 representatives # comparing sequences from 16872 to 26758 ....................... ---------- 7269 remaining sequences to the next cycle ---------- new table with 2151 representatives # comparing sequences from 19489 to 29284 ..................... .......... 20000 finished 15762 clusters .. ---------- 7218 remaining sequences to the next cycle ---------- new table with 2170 representatives # comparing sequences from 22066 to 31772 ..................... ---------- 7470 remaining sequences to the next cycle ---------- new table with 1877 representatives # comparing sequences from 24302 to 33931 ..................... ---------- 7136 remaining sequences to the next cycle ---------- new table with 2126 representatives # comparing sequences from 26795 to 36338 ...................... ---------- 7501 remaining sequences to the next cycle ---------- new table with 1759 representatives # comparing sequences from 28837 to 38310 ..................... .......... 30000 finished 24241 clusters . ---------- 7106 remaining sequences to the next cycle ---------- new table with 2023 representatives # comparing sequences from 31204 to 40595 ..................... ---------- 6706 remaining sequences to the next cycle ---------- new table with 2312 representatives # comparing sequences from 33889 to 43188 ..................... ---------- 6791 remaining sequences to the next cycle ---------- new table with 2202 representatives # comparing sequences from 36397 to 45609 .................... ---------- 6647 remaining sequences to the next cycle ---------- new table with 2245 representatives # comparing sequences from 38962 to 48086 ..................... .......... 40000 finished 32972 clusters . ---------- 6368 remaining sequences to the next cycle ---------- new table with 2413 representatives # comparing sequences from 41718 to 50747 ....................... ---------- 6095 remaining sequences to the next cycle ---------- new table with 2588 representatives # comparing sequences from 44652 to 53580 ....................... ---------- 6016 remaining sequences to the next cycle ---------- new table with 2590 representatives # comparing sequences from 47564 to 56391 ....................... .......... 50000 finished 41817 clusters ---------- 5882 remaining sequences to the next cycle ---------- new table with 2631 representatives # comparing sequences from 50509 to 59235 ....................... ---------- 5835 remaining sequences to the next cycle ---------- new table with 2623 representatives # comparing sequences from 53400 to 62026 ...................... ---------- 5899 remaining sequences to the next cycle ---------- new table with 2470 representatives # comparing sequences from 56127 to 64659 ..................... ---------- 5914 remaining sequences to the next cycle ---------- new table with 2371 representatives # comparing sequences from 58745 to 67187 ..................... .......... 60000 finished 50868 clusters ---------- 5526 remaining sequences to the next cycle ---------- new table with 2671 representatives # comparing sequences from 61661 to 70002 ...................... ---------- 5274 remaining sequences to the next cycle ---------- new table with 2794 representatives # comparing sequences from 64728 to 72963 ...................... ---------- 5001 remaining sequences to the next cycle ---------- new table with 2994 representatives # comparing sequences from 67962 to 76086 ...................... .......... 70000 finished 60071 clusters . ---------- 4946 remaining sequences to the next cycle ---------- new table with 2927 representatives # comparing sequences from 71140 to 79154 ....................... ---------- 4711 remaining sequences to the next cycle ---------- new table with 3063 representatives # comparing sequences from 74443 to 82343 ....................... ---------- 4942 remaining sequences to the next cycle ---------- new table with 2748 representatives # comparing sequences from 77401 to 85199 ..................... .......... 80000 finished 69368 clusters ---------- 4726 remaining sequences to the next cycle ---------- new table with 2871 representatives # comparing sequences from 80473 to 88165 ..................... ---------- 4757 remaining sequences to the next cycle ---------- new table with 2744 representatives # comparing sequences from 83408 to 90999 ...................... ---------- 4378 remaining sequences to the next cycle ---------- new table with 3039 representatives # comparing sequences from 86621 to 94101 ...................... ---------- 4346 remaining sequences to the next cycle ---------- new table with 2918 representatives # comparing sequences from 89755 to 97127 ..................... .......... 90000 finished 78733 clusters ... ---------- 4042 remaining sequences to the next cycle ---------- new table with 3116 representatives # comparing sequences from 93085 to 100343 ....................... ---------- 3969 remaining sequences to the next cycle ---------- new table with 3098 representatives # comparing sequences from 96374 to 103518 ...................... 100.0% ---------- 3957 remaining sequences to the next cycle ---------- new table with 2981 representatives # comparing sequences from 99561 to 106595 .................... .......... 100000 finished 88119 clusters .. ---------- 3539 remaining sequences to the next cycle ---------- new table with 3294 representatives # comparing sequences from 103056 to 109970 ...................... ---------- 3261 remaining sequences to the next cycle ---------- new table with 3455 representatives # comparing sequences from 106709 to 113497 ...................... ---------- 3660 remaining sequences to the next cycle ---------- new table with 2931 representatives # comparing sequences from 109837 to 116517 .................... .......... 110000 finished 97541 clusters ... ---------- 3423 remaining sequences to the next cycle ---------- new table with 3080 representatives # comparing sequences from 113094 to 119662 ....................... ---------- 3381 remaining sequences to the next cycle ---------- new table with 3010 representatives # comparing sequences from 116281 to 122739 .................... ---------- 2933 remaining sequences to the next cycle ---------- new table with 3347 representatives # comparing sequences from 119806 to 126142 ..................... .......... 120000 finished 107008 clusters ... ---------- 3049 remaining sequences to the next cycle ---------- new table with 3108 representatives # comparing sequences from 123093 to 129316 ...................... ---------- 2948 remaining sequences to the next cycle ---------- new table with 3099 representatives # comparing sequences from 126368 to 132478 ...................... ---------- 3006 remaining sequences to the next cycle ---------- new table with 2935 representatives # comparing sequences from 129472 to 135475 ................... .......... 130000 finished 116472 clusters .. ---------- 2811 remaining sequences to the next cycle ---------- new table with 3045 representatives # comparing sequences from 132664 to 138557 ....................... ---------- 2395 remaining sequences to the next cycle ---------- new table with 3323 representatives # comparing sequences from 136162 to 141934 ....................... ---------- 2397 remaining sequences to the next cycle ---------- new table with 3205 representatives # comparing sequences from 139537 to 145193 .................... .......... 140000 finished 125977 clusters ---------- 2646 remaining sequences to the next cycle ---------- new table with 2854 representatives # comparing sequences from 142547 to 148099 ...................... ---------- 2570 remaining sequences to the next cycle ---------- new table with 2851 representatives # comparing sequences from 145529 to 150978 ...................... ---------- 2193 remaining sequences to the next cycle ---------- new table with 3102 representatives # comparing sequences from 148785 to 154122 ...................... .......... 150000 finished 135499 clusters .. ---------- 1909 remaining sequences to the next cycle ---------- new table with 3251 representatives # comparing sequences from 152213 to 157432 ...................... ---------- 2227 remaining sequences to the next cycle ---------- new table with 2862 representatives # comparing sequences from 155205 to 160320 ...................... ---------- 2119 remaining sequences to the next cycle ---------- new table with 2863 representatives # comparing sequences from 158201 to 163213 ...................... .......... 160000 finished 145066 clusters . ---------- 1894 remaining sequences to the next cycle ---------- new table with 3011 representatives # comparing sequences from 161319 to 166224 ....................... ---------- 1833 remaining sequences to the next cycle ---------- new table with 2946 representatives # comparing sequences from 164391 to 169190 ...................... ---------- 1652 remaining sequences to the next cycle ---------- new table with 3021 representatives # comparing sequences from 167538 to 172228 ..................... .......... 170000 finished 154673 clusters 100.0% ---------- 1835 remaining sequences to the next cycle ---------- new table with 2754 representatives # comparing sequences from 170393 to 174985 ...................... ---------- 2014 remaining sequences to the next cycle ---------- new table with 2476 representatives # comparing sequences from 172971 to 177474 ....................... ---------- 1885 remaining sequences to the next cycle ---------- new table with 2527 representatives # comparing sequences from 175589 to 180002 ...................... ---------- 1604 remaining sequences to the next cycle ---------- new table with 2685 representatives # comparing sequences from 178398 to 182714 ...................... .......... 180000 finished 164280 clusters . ---------- 1513 remaining sequences to the next cycle ---------- new table with 2689 representatives # comparing sequences from 181201 to 185420 ...................... ---------- 1372 remaining sequences to the next cycle ---------- new table with 2744 representatives # comparing sequences from 184048 to 188169 ...................... ---------- 1635 remaining sequences to the next cycle ---------- new table with 2407 representatives # comparing sequences from 186534 to 190569 ....................... ---------- 1412 remaining sequences to the next cycle ---------- new table with 2542 representatives # comparing sequences from 189157 to 193102 ..................... .......... 190000 finished 173933 clusters . ---------- 1529 remaining sequences to the next cycle ---------- new table with 2334 representatives # comparing sequences from 191573 to 195434 ...................... ---------- 1606 remaining sequences to the next cycle ---------- new table with 2158 representatives # comparing sequences from 193828 to 197612 ...................... ---------- 2612 remaining sequences to the next cycle ---------- new table with 1127 representatives # comparing sequences from 195000 to 198743 ..................... 100.0% ---------- 1935 remaining sequences to the next cycle ---------- new table with 1738 representatives # comparing sequences from 196808 to 200489 ...................... 100.0% ---------- 1624 remaining sequences to the next cycle ---------- new table with 1985 representatives # comparing sequences from 198865 to 202475 ...................... .......... 200000 finished 183564 clusters ---------- 1605 remaining sequences to the next cycle ---------- new table with 1945 representatives # comparing sequences from 200870 to 204411 ....................... ---------- 1389 remaining sequences to the next cycle ---------- new table with 2070 representatives # comparing sequences from 203022 to 206489 ..................... ---------- 2489 remaining sequences to the next cycle ---------- new table with 951 representatives # comparing sequences from 204000 to 207433 ..................... ---------- 1820 remaining sequences to the next cycle ---------- new table with 1556 representatives # comparing sequences from 205613 to 208990 ..................... ---------- 1396 remaining sequences to the next cycle ---------- new table with 1916 representatives # comparing sequences from 207594 to 210903 ..................... ---------- 1304 remaining sequences to the next cycle ---------- new table with 1930 representatives # comparing sequences from 209599 to 212839 .................... .......... 210000 finished 193224 clusters . ---------- 1399 remaining sequences to the next cycle ---------- new table with 1790 representatives # comparing sequences from 211440 to 214616 ...................... 100.0% ---------- 1313 remaining sequences to the next cycle ---------- new table with 1802 representatives # comparing sequences from 213303 to 216415 ..................... ---------- 1349 remaining sequences to the next cycle ---------- new table with 1708 representatives # comparing sequences from 215066 to 218117 ..................... ---------- 1578 remaining sequences to the next cycle ---------- new table with 1430 representatives # comparing sequences from 216539 to 219540 ..................... ---------- 1480 remaining sequences to the next cycle ---------- new table with 1481 representatives # comparing sequences from 218060 to 221008 ..................... 100.0% ---------- 1280 remaining sequences to the next cycle ---------- new table with 1614 representatives # comparing sequences from 219728 to 222619 .................... .......... 220000 finished 202928 clusters . ---------- 1108 remaining sequences to the next cycle ---------- new table with 1739 representatives # comparing sequences from 221511 to 224340 ..................... 100.0% ---------- 1098 remaining sequences to the next cycle ---------- new table with 1672 representatives # comparing sequences from 223242 to 226011 .................... ---------- 1252 remaining sequences to the next cycle ---------- new table with 1486 representatives # comparing sequences from 224759 to 227476 ..................... ---------- 1173 remaining sequences to the next cycle ---------- new table with 1512 representatives # comparing sequences from 226303 to 228967 ..................... ---------- 1110 remaining sequences to the next cycle ---------- new table with 1510 representatives # comparing sequences from 227857 to 230467 ..................... ---------- 1472 remaining sequences to the next cycle ---------- new table with 1114 representatives # comparing sequences from 228995 to 231566 ..................... .......... 230000 finished 212666 clusters ---------- 1150 remaining sequences to the next cycle ---------- new table with 1372 representatives # comparing sequences from 230416 to 232938 ..................... ---------- 1128 remaining sequences to the next cycle ---------- new table with 1364 representatives # comparing sequences from 231810 to 234284 ..................... 100.0% ---------- 1418 remaining sequences to the next cycle ---------- new table with 1028 representatives # comparing sequences from 232866 to 235304 ...................... ---------- 1179 remaining sequences to the next cycle ---------- new table with 1230 representatives # comparing sequences from 234125 to 236519 ................... ---------- 1173 remaining sequences to the next cycle ---------- new table with 1194 representatives # comparing sequences from 235346 to 237698 ..................... 100.0% ---------- 1095 remaining sequences to the next cycle ---------- new table with 1236 representatives # comparing sequences from 236603 to 238912 ..................... ---------- 969 remaining sequences to the next cycle ---------- new table with 1308 representatives # comparing sequences from 237943 to 240205 ...................... 100.0% ---------- 1071 remaining sequences to the next cycle ---------- new table with 1171 representatives # comparing sequences from 239134 to 241355 ................... .......... 240000 finished 222434 clusters ---------- 927 remaining sequences to the next cycle ---------- new table with 1255 representatives # comparing sequences from 240428 to 242605 .................... ---------- 978 remaining sequences to the next cycle ---------- new table with 1176 representatives # comparing sequences from 241627 to 243762 ..................... ---------- 1085 remaining sequences to the next cycle ---------- new table with 1033 representatives # comparing sequences from 242677 to 244776 ..................... ---------- 1050 remaining sequences to the next cycle ---------- new table with 1031 representatives # comparing sequences from 243726 to 245789 ..................... ---------- 1073 remaining sequences to the next cycle ---------- new table with 969 representatives # comparing sequences from 244716 to 246745 ..................... ---------- 1028 remaining sequences to the next cycle ---------- new table with 972 representatives # comparing sequences from 245717 to 247711 ..................... ---------- 1050 remaining sequences to the next cycle ---------- new table with 912 representatives # comparing sequences from 246661 to 248623 ..................... ---------- 1363 remaining sequences to the next cycle ---------- new table with 584 representatives # comparing sequences from 247260 to 249201 .................... 100.0% ---------- 1161 remaining sequences to the next cycle ---------- new table with 763 representatives # comparing sequences from 248040 to 249954 .................... ---------- 1006 remaining sequences to the next cycle ---------- new table with 891 representatives # comparing sequences from 248948 to 250831 ..................... ---------- 1025 remaining sequences to the next cycle ---------- new table with 841 representatives # comparing sequences from 249806 to 251659 ..................... .......... 250000 finished 232212 clusters 100.0% ---------- 987 remaining sequences to the next cycle ---------- new table with 852 representatives # comparing sequences from 250672 to 252496 ..................... ---------- 1059 remaining sequences to the next cycle ---------- new table with 748 representatives # comparing sequences from 251437 to 253234 ..................... ---------- 802 remaining sequences to the next cycle ---------- new table with 978 representatives # comparing sequences from 252432 to 254195 .................... ---------- 881 remaining sequences to the next cycle ---------- new table with 863 representatives # comparing sequences from 253314 to 255046 .................... ---------- 900 remaining sequences to the next cycle ---------- new table with 818 representatives # comparing sequences from 254146 to 255850 .................. ---------- 919 remaining sequences to the next cycle ---------- new table with 760 representatives # comparing sequences from 254931 to 256608 ..................... ---------- 800 remaining sequences to the next cycle ---------- new table with 863 representatives # comparing sequences from 255808 to 257454 .................... ---------- 730 remaining sequences to the next cycle ---------- new table with 904 representatives # comparing sequences from 256724 to 258339 .................... ---------- 749 remaining sequences to the next cycle ---------- new table with 841 representatives # comparing sequences from 257590 to 259175 ..................... 100.0% ---------- 701 remaining sequences to the next cycle ---------- new table with 867 representatives # comparing sequences from 258474 to 260028 ..................... ---------- 795 remaining sequences to the next cycle ---------- new table with 752 representatives # comparing sequences from 259233 to 260761 .................... ---------- 857 remaining sequences to the next cycle ---------- new table with 661 representatives # comparing sequences from 259904 to 261409 ..................... .......... 260000 finished 242021 clusters ---------- 769 remaining sequences to the next cycle ---------- new table with 718 representatives # comparing sequences from 260640 to 262120 .................... ---------- 829 remaining sequences to the next cycle ---------- new table with 645 representatives # comparing sequences from 261291 to 262748 ..................... 100.0% ---------- 745 remaining sequences to the next cycle ---------- new table with 703 representatives # comparing sequences from 262003 to 263436 ................... ---------- 806 remaining sequences to the next cycle ---------- new table with 615 representatives # comparing sequences from 262630 to 264041 .................. ---------- 1181 remaining sequences to the next cycle ---------- new table with 230 representatives # comparing sequences from 262860 to 264263 .................... ---------- 841 remaining sequences to the next cycle ---------- new table with 548 representatives # comparing sequences from 263422 to 264806 ................... ---------- 854 remaining sequences to the next cycle ---------- new table with 524 representatives # comparing sequences from 263952 to 265318 ..................... ---------- 818 remaining sequences to the next cycle ---------- new table with 537 representatives # comparing sequences from 264500 to 265847 ..................... ---------- 727 remaining sequences to the next cycle ---------- new table with 616 representatives # comparing sequences from 265120 to 266445 ................... ---------- 652 remaining sequences to the next cycle ---------- new table with 658 representatives # comparing sequences from 265793 to 267095 .................... ---------- 632 remaining sequences to the next cycle ---------- new table with 663 representatives # comparing sequences from 266463 to 267742 ..................... ---------- 626 remaining sequences to the next cycle ---------- new table with 642 representatives # comparing sequences from 267116 to 268372 .................... ---------- 632 remaining sequences to the next cycle ---------- new table with 607 representatives # comparing sequences from 267740 to 268975 ..................... 100.0% ---------- 722 remaining sequences to the next cycle ---------- new table with 505 representatives # comparing sequences from 268253 to 269470 ................... ---------- 712 remaining sequences to the next cycle ---------- new table with 494 representatives # comparing sequences from 268758 to 269958 ..................... ---------- 725 remaining sequences to the next cycle ---------- new table with 472 representatives # comparing sequences from 269233 to 270416 ................... ---------- 640 remaining sequences to the next cycle ---------- new table with 518 representatives # comparing sequences from 269776 to 270941 ..................... .......... 270000 finished 251842 clusters ---------- 690 remaining sequences to the next cycle ---------- new table with 470 representatives # comparing sequences from 270251 to 271399 .................... ---------- 623 remaining sequences to the next cycle ---------- new table with 513 representatives # comparing sequences from 270776 to 271906 .................... ---------- 564 remaining sequences to the next cycle ---------- new table with 553 representatives # comparing sequences from 271342 to 272453 .................. ---------- 624 remaining sequences to the next cycle ---------- new table with 474 representatives # comparing sequences from 271829 to 272923 ..................... ---------- 563 remaining sequences to the next cycle ---------- new table with 525 representatives # comparing sequences from 272360 to 273436 .................... ---------- 566 remaining sequences to the next cycle ---------- new table with 503 representatives # comparing sequences from 272870 to 273928 ................... 100.0% ---------- 532 remaining sequences to the next cycle ---------- new table with 518 representatives # comparing sequences from 273396 to 274436 ................... 100.0% ---------- 541 remaining sequences to the next cycle ---------- new table with 482 representatives # comparing sequences from 273895 to 274918 .................... ---------- 526 remaining sequences to the next cycle ---------- new table with 488 representatives # comparing sequences from 274392 to 275398 .................. ---------- 585 remaining sequences to the next cycle ---------- new table with 415 representatives # comparing sequences from 274813 to 275804 ..................... ---------- 517 remaining sequences to the next cycle ---------- new table with 459 representatives # comparing sequences from 275287 to 276262 ................... ---------- 540 remaining sequences to the next cycle ---------- new table with 434 representatives # comparing sequences from 275722 to 276682 ..................... ---------- 664 remaining sequences to the next cycle ---------- new table with 289 representatives # comparing sequences from 276018 to 276968 .................... ---------- 578 remaining sequences to the next cycle ---------- new table with 360 representatives # comparing sequences from 276390 to 277327 .................... ---------- 566 remaining sequences to the next cycle ---------- new table with 371 representatives # comparing sequences from 276761 to 277685 ..................... ---------- 559 remaining sequences to the next cycle ---------- new table with 355 representatives # comparing sequences from 277126 to 278037 .................... ---------- 561 remaining sequences to the next cycle ---------- new table with 342 representatives # comparing sequences from 277476 to 278375 ................... ---------- 512 remaining sequences to the next cycle ---------- new table with 387 representatives # comparing sequences from 277863 to 278749 .................... ---------- 470 remaining sequences to the next cycle ---------- new table with 399 representatives # comparing sequences from 278279 to 279151 .................... ---------- 468 remaining sequences to the next cycle ---------- new table with 395 representatives # comparing sequences from 278683 to 279541 .................... ---------- 532 remaining sequences to the next cycle ---------- new table with 324 representatives # comparing sequences from 279009 to 279855 .................... ---------- 477 remaining sequences to the next cycle ---------- new table with 357 representatives # comparing sequences from 279378 to 280212 .................... ---------- 510 remaining sequences to the next cycle ---------- new table with 318 representatives # comparing sequences from 279702 to 280524 ..................... .......... 280000 finished 261652 clusters ---------- 511 remaining sequences to the next cycle ---------- new table with 311 representatives # comparing sequences from 280013 to 280825 .................... 100.0% ---------- 448 remaining sequences to the next cycle ---------- new table with 359 representatives # comparing sequences from 280377 to 281176 .................... ---------- 482 remaining sequences to the next cycle ---------- new table with 309 representatives # comparing sequences from 280694 to 281482 .................... ---------- 496 remaining sequences to the next cycle ---------- new table with 291 representatives # comparing sequences from 280986 to 281764 .................... ---------- 452 remaining sequences to the next cycle ---------- new table with 320 representatives # comparing sequences from 281312 to 282079 .................. ---------- 492 remaining sequences to the next cycle ---------- new table with 269 representatives # comparing sequences from 281587 to 282344 .................... ---------- 467 remaining sequences to the next cycle ---------- new table with 283 representatives # comparing sequences from 281877 to 282624 .................... ---------- 480 remaining sequences to the next cycle ---------- new table with 267 representatives # comparing sequences from 282144 to 282882 .................... 100.0% ---------- 462 remaining sequences to the next cycle ---------- new table with 269 representatives # comparing sequences from 282420 to 283149 .................... ---------- 401 remaining sequences to the next cycle ---------- new table with 321 representatives # comparing sequences from 282748 to 283465 ..................... ---------- 409 remaining sequences to the next cycle ---------- new table with 307 representatives # comparing sequences from 283056 to 283763 .................... ---------- 454 remaining sequences to the next cycle ---------- new table with 253 representatives # comparing sequences from 283309 to 284007 .................... ---------- 410 remaining sequences to the next cycle ---------- new table with 281 representatives # comparing sequences from 283597 to 284285 .................... ---------- 432 remaining sequences to the next cycle ---------- new table with 251 representatives # comparing sequences from 283853 to 284532 ..................... ---------- 390 remaining sequences to the next cycle ---------- new table with 282 representatives # comparing sequences from 284142 to 284811 ................... ---------- 429 remaining sequences to the next cycle ---------- new table with 240 representatives # comparing sequences from 284382 to 285043 ................... ---------- 417 remaining sequences to the next cycle ---------- new table with 239 representatives # comparing sequences from 284626 to 285279 ................... ---------- 365 remaining sequences to the next cycle ---------- new table with 282 representatives # comparing sequences from 284914 to 285557 ..................... ---------- 389 remaining sequences to the next cycle ---------- new table with 247 representatives # comparing sequences from 285168 to 285802 .................... ---------- 413 remaining sequences to the next cycle ---------- new table with 221 representatives # comparing sequences from 285389 to 286015 ................... ---------- 406 remaining sequences to the next cycle ---------- new table with 217 representatives # comparing sequences from 285609 to 286228 ................... ---------- 342 remaining sequences to the next cycle ---------- new table with 266 representatives # comparing sequences from 285886 to 286495 .................... ---------- 341 remaining sequences to the next cycle ---------- new table with 263 representatives # comparing sequences from 286154 to 286754 .................... ---------- 335 remaining sequences to the next cycle ---------- new table with 265 representatives # comparing sequences from 286419 to 287010 ................... ---------- 349 remaining sequences to the next cycle ---------- new table with 241 representatives # comparing sequences from 286661 to 287244 ................... ---------- 370 remaining sequences to the next cycle ---------- new table with 210 representatives # comparing sequences from 286874 to 287449 ..................... ---------- 361 remaining sequences to the next cycle ---------- new table with 211 representatives # comparing sequences from 287088 to 287656 .................... ---------- 363 remaining sequences to the next cycle ---------- new table with 203 representatives # comparing sequences from 287293 to 287854 ................... ---------- 364 remaining sequences to the next cycle ---------- new table with 197 representatives # comparing sequences from 287490 to 288044 .................... ---------- 331 remaining sequences to the next cycle ---------- new table with 223 representatives # comparing sequences from 287713 to 288259 ................... ---------- 321 remaining sequences to the next cycle ---------- new table with 221 representatives # comparing sequences from 287938 to 288476 .................... ---------- 338 remaining sequences to the next cycle ---------- new table with 196 representatives # comparing sequences from 288138 to 288670 ................... 100.0% ---------- 309 remaining sequences to the next cycle ---------- new table with 216 representatives # comparing sequences from 288361 to 288885 ................... ---------- 298 remaining sequences to the next cycle ---------- new table with 226 representatives # comparing sequences from 288587 to 289103 .................... 100.0% ---------- 310 remaining sequences to the next cycle ---------- new table with 206 representatives # comparing sequences from 288793 to 289302 .................. ---------- 329 remaining sequences to the next cycle ---------- new table with 177 representatives # comparing sequences from 288973 to 289476 ................... ---------- 313 remaining sequences to the next cycle ---------- new table with 179 representatives # comparing sequences from 289163 to 289659 .................... ---------- 273 remaining sequences to the next cycle ---------- new table with 215 representatives # comparing sequences from 289386 to 289875 ................... ---------- 280 remaining sequences to the next cycle ---------- new table with 206 representatives # comparing sequences from 289595 to 290076 .................... ---------- 314 remaining sequences to the next cycle ---------- new table with 167 representatives # comparing sequences from 289762 to 290238 .................... ---------- 317 remaining sequences to the next cycle ---------- new table with 159 representatives # comparing sequences from 289921 to 290391 .................... .......... 290000 finished 271498 clusters ---------- 307 remaining sequences to the next cycle ---------- new table with 161 representatives # comparing sequences from 290084 to 290548 .................... ---------- 292 remaining sequences to the next cycle ---------- new table with 168 representatives # comparing sequences from 290256 to 290715 .................... ---------- 291 remaining sequences to the next cycle ---------- new table with 167 representatives # comparing sequences from 290424 to 290877 ................... ---------- 287 remaining sequences to the next cycle ---------- new table with 161 representatives # comparing sequences from 290590 to 291037 ................... ---------- 290 remaining sequences to the next cycle ---------- new table with 157 representatives # comparing sequences from 290747 to 291189 ................... ---------- 289 remaining sequences to the next cycle ---------- new table with 153 representatives # comparing sequences from 290900 to 291336 ..................... ---------- 259 remaining sequences to the next cycle ---------- new table with 176 representatives # comparing sequences from 291077 to 291507 .................... ---------- 258 remaining sequences to the next cycle ---------- new table with 172 representatives # comparing sequences from 291249 to 291673 ................... ---------- 238 remaining sequences to the next cycle ---------- new table with 184 representatives # comparing sequences from 291435 to 291853 .................... ---------- 260 remaining sequences to the next cycle ---------- new table with 154 representatives # comparing sequences from 291593 to 292005 ................... ---------- 262 remaining sequences to the next cycle ---------- new table with 145 representatives # comparing sequences from 291743 to 292150 ................... ---------- 244 remaining sequences to the next cycle ---------- new table with 161 representatives # comparing sequences from 291906 to 292308 .................... ---------- 265 remaining sequences to the next cycle ---------- new table with 137 representatives # comparing sequences from 292043 to 292440 ................... ---------- 264 remaining sequences to the next cycle ---------- new table with 133 representatives # comparing sequences from 292176 to 292568 .................... ---------- 261 remaining sequences to the next cycle ---------- new table with 130 representatives # comparing sequences from 292307 to 292695 ................... ---------- 249 remaining sequences to the next cycle ---------- new table with 135 representatives # comparing sequences from 292446 to 292829 ................... ---------- 244 remaining sequences to the next cycle ---------- new table with 135 representatives # comparing sequences from 292585 to 292963 ................... ---------- 223 remaining sequences to the next cycle ---------- new table with 153 representatives # comparing sequences from 292740 to 293113 .................. ---------- 204 remaining sequences to the next cycle ---------- new table with 162 representatives # comparing sequences from 292909 to 293276 .................... ---------- 237 remaining sequences to the next cycle ---------- new table with 130 representatives # comparing sequences from 293039 to 293402 ................... ---------- 216 remaining sequences to the next cycle ---------- new table with 147 representatives # comparing sequences from 293186 to 293544 ................... ---------- 236 remaining sequences to the next cycle ---------- new table with 122 representatives # comparing sequences from 293308 to 293661 .................... ---------- 208 remaining sequences to the next cycle ---------- new table with 145 representatives # comparing sequences from 293453 to 293801 ................... ---------- 198 remaining sequences to the next cycle ---------- new table with 147 representatives # comparing sequences from 293603 to 293946 ................. ---------- 216 remaining sequences to the next cycle ---------- new table with 126 representatives # comparing sequences from 293730 to 294069 .................... ---------- 210 remaining sequences to the next cycle ---------- new table with 124 representatives # comparing sequences from 293859 to 294193 .................... ---------- 213 remaining sequences to the next cycle ---------- new table with 119 representatives # comparing sequences from 293980 to 294310 ..................... 100.0% ---------- 195 remaining sequences to the next cycle ---------- new table with 131 representatives # comparing sequences from 294115 to 294440 ................... ---------- 214 remaining sequences to the next cycle ---------- new table with 111 representatives # comparing sequences from 294226 to 294548 ................... ---------- 212 remaining sequences to the next cycle ---------- new table with 110 representatives # comparing sequences from 294336 to 294654 .................... ---------- 189 remaining sequences to the next cycle ---------- new table with 129 representatives # comparing sequences from 294465 to 294778 ................... 100.0% ---------- 203 remaining sequences to the next cycle ---------- new table with 108 representatives # comparing sequences from 294575 to 294885 .................... ---------- 185 remaining sequences to the next cycle ---------- new table with 123 representatives # comparing sequences from 294700 to 295005 .................. ---------- 177 remaining sequences to the next cycle ---------- new table with 121 representatives # comparing sequences from 294828 to 295129 .................. ---------- 200 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 294929 to 295226 ..................... ---------- 197 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 295029 to 295323 .................... ---------- 179 remaining sequences to the next cycle ---------- new table with 110 representatives # comparing sequences from 295144 to 295434 ................... ---------- 189 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 295245 to 295532 .................... ---------- 187 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 295345 to 295628 ................... ---------- 183 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 295445 to 295725 .................. ---------- 171 remaining sequences to the next cycle ---------- new table with 109 representatives # comparing sequences from 295554 to 295830 .................... ---------- 176 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 295654 to 295926 ................... ---------- 170 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 295756 to 296025 ................... ---------- 167 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 295858 to 296123 ................... ---------- 164 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 295959 to 296221 ................... ---------- 156 remaining sequences to the next cycle ---------- new table with 105 representatives # comparing sequences from 296065 to 296323 ................... ---------- 156 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 296167 to 296422 .................. ---------- 151 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 296271 to 296522 ................... ---------- 150 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 296372 to 296620 ................... ---------- 148 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 296472 to 296716 ................... 100.0% ---------- 144 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 296572 to 296813 .................. ---------- 141 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 296672 to 296909 .................. ---------- 137 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 296772 to 297006 .................. ---------- 131 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 296875 to 297105 ................. ---------- 127 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 296978 to 297205 ................. ---------- 122 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 297083 to 297306 ................. ---------- 116 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 297190 to 297409 ................... ---------- 118 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 297291 to 297507 ................... ---------- 114 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 297393 to 297605 ................... ---------- 110 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 297495 to 297704 ................... ---------- 109 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 297595 to 297800 .................. ---------- 105 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 297695 to 297897 .................. ---------- 102 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 297795 to 297994 .................. ---------- 99 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 297895 to 298090 ................. ---------- 91 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 297999 to 298191 ..................... ---------- 91 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 298100 to 298288 ................... ---------- 86 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 298202 to 298387 ................. ---------- 83 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 298304 to 298485 ................ ---------- 78 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 298407 to 298584 .................. ---------- 72 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 298512 to 298686 ................... ---------- 69 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 298617 to 298787 ................... ---------- 70 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 298717 to 298884 ................... ---------- 67 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 298817 to 298980 .................. ---------- 63 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 298917 to 299077 ................... ---------- 60 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 299017 to 299173 .................. ---------- 52 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 299121 to 299274 ................... ---------- 48 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 299226 to 299375 ................. ---------- 47 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 299328 to 299474 .................. ---------- 43 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 299431 to 299573 .................. ---------- 37 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 299536 to 299675 .................... ---------- 35 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 299640 to 299775 ................... ---------- 35 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 299740 to 299872 ................... ---------- 32 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 299840 to 299968 .................. ---------- 28 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 299940 to 300065 ................... .......... 300000 finished 281341 clusters ---------- 25 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 300040 to 300161 .................. ---------- 21 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 300140 to 300258 .................. ---------- 15 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 300243 to 300357 ................... ---------- 13 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 300344 to 300455 ................. ---------- 9 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 300446 to 300553 .................. ---------- 5 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 300548 to 300652 ............... ---------- 2 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 300650 to 300750 ................---------- new table with 97 representatives # comparing sequences from 300750 to 300847 ....................---------- new table with 95 representatives # comparing sequences from 300847 to 300940 ..................---------- new table with 93 representatives # comparing sequences from 300940 to 301030 ...................---------- new table with 90 representatives # comparing sequences from 301030 to 301117 ..................---------- new table with 87 representatives # comparing sequences from 301117 to 301201 .................---------- new table with 84 representatives # comparing sequences from 301201 to 301282 ................---------- new table with 80 representatives # comparing sequences from 301282 to 301360 ..................---------- new table with 74 representatives # comparing sequences from 301360 to 301436 ..................---------- new table with 75 representatives # comparing sequences from 301436 to 301509 ...................---------- new table with 72 representatives # comparing sequences from 301509 to 301580 .................---------- new table with 71 representatives # comparing sequences from 301580 to 301648 ................---------- new table with 64 representatives # comparing sequences from 301648 to 301714 .................---------- new table with 64 representatives # comparing sequences from 301714 to 301777 ................---------- new table with 61 representatives # comparing sequences from 301777 to 301838 ..............---------- new table with 58 representatives # comparing sequences from 301838 to 301897 ....................---------- new table with 57 representatives # comparing sequences from 301897 to 301954 ...................---------- new table with 57 representatives # comparing sequences from 301954 to 302009 ...................---------- new table with 55 representatives # comparing sequences from 302009 to 302062 ..................---------- new table with 53 representatives # comparing sequences from 302062 to 302113 .................---------- new table with 51 representatives # comparing sequences from 302113 to 302163 ................---------- new table with 50 representatives # comparing sequences from 302163 to 302211 ................---------- new table with 48 representatives # comparing sequences from 302211 to 302257 ................---------- new table with 46 representatives # comparing sequences from 302257 to 302302 ...............---------- new table with 45 representatives # comparing sequences from 302302 to 302345 ..............---------- new table with 43 representatives # comparing sequences from 302345 to 302387 ..............---------- new table with 42 representatives # comparing sequences from 302387 to 302427 .............---------- new table with 39 representatives # comparing sequences from 302427 to 302466 ...................---------- new table with 39 representatives # comparing sequences from 302466 to 302504 ...................---------- new table with 37 representatives # comparing sequences from 302504 to 302540 .................---------- new table with 35 representatives # comparing sequences from 302540 to 302575 ..................---------- new table with 34 representatives # comparing sequences from 302575 to 303568 .....................---------- new table with 975 representatives 303568 finished 284852 clusters Approximated maximum memory consumption: 887M writing new database writing clustering information program completed ! Total CPU time 2944.55 ================================================================ Program: CD-HIT, V4.8.1 (+OpenMP), Jul 24 2019, 13:13:52 Command: /gscratch/srlab/programs/cd-hit-v4.8.1-2019-0228/cd-hit-est -o EPI124.cdhit -c 0.98 -i /gscratch/srlab/sam/data/P_generosa/transcriptomes/juvenile/EPI124/Trinity.fasta -p 1 -d 0 -b 3 -T 27 -M 0 Started: Mon Jul 29 12:22:44 2019 ================================================================ Output ---------------------------------------------------------------- total seq: 421670 longest and shortest : 29847 and 179 Total letters: 370100426 Sequences have been sorted Approximated minimal memory consumption: Sequence : 428M Buffer : 27 X 19M = 523M Table : 2 X 23M = 47M Miscellaneous : 9M Total : 1009M Table limit with the given memory limit: Max number of representatives: 458974 Max number of word counting entries: 99014917 # comparing sequences from 0 to 1015 .---------- new table with 697 representatives # comparing sequences from 1015 to 15520 .................... ---------- 13522 remaining sequences to the next cycle ---------- new table with 724 representatives # comparing sequences from 1998 to 16469 ...................... ---------- 13457 remaining sequences to the next cycle ---------- new table with 741 representatives # comparing sequences from 3012 to 17448 ..................... ---------- 13099 remaining sequences to the next cycle ---------- new table with 984 representatives # comparing sequences from 4349 to 18739 ................... ---------- 12810 remaining sequences to the next cycle ---------- new table with 1175 representatives # comparing sequences from 5929 to 20264 .................... ---------- 12527 remaining sequences to the next cycle ---------- new table with 1365 representatives # comparing sequences from 7737 to 22010 ...................... ---------- 12258 remaining sequences to the next cycle ---------- new table with 1549 representatives # comparing sequences from 9752 to 23956 ................... .......... 10000 finished 7417 clusters . ---------- 11823 remaining sequences to the next cycle ---------- new table with 1865 representatives # comparing sequences from 12133 to 26254 ...................... ---------- 11697 remaining sequences to the next cycle ---------- new table with 1944 representatives # comparing sequences from 14557 to 28595 ................... ---------- 11607 remaining sequences to the next cycle ---------- new table with 1951 representatives # comparing sequences from 16988 to 30942 ..................... ---------- 11179 remaining sequences to the next cycle ---------- new table with 2216 representatives # comparing sequences from 19763 to 33621 ................... .......... 20000 finished 15405 clusters .. ---------- 10964 remaining sequences to the next cycle ---------- new table with 2336 representatives # comparing sequences from 22657 to 36416 ...................... ---------- 10983 remaining sequences to the next cycle ---------- new table with 2248 representatives # comparing sequences from 25433 to 39096 ...................... ---------- 10802 remaining sequences to the next cycle ---------- new table with 2388 representatives # comparing sequences from 28294 to 41858 ..................... ---------- 10509 remaining sequences to the next cycle ---------- new table with 2575 representatives # comparing sequences from 31349 to 44808 ....................... ---------- 10296 remaining sequences to the next cycle ---------- new table with 2705 representatives # comparing sequences from 34512 to 47862 ...................... ---------- 10217 remaining sequences to the next cycle ---------- new table with 2699 representatives # comparing sequences from 37645 to 50887 ...................... .......... 40000 finished 32197 clusters . 100.0% ---------- 9840 remaining sequences to the next cycle ---------- new table with 2935 representatives # comparing sequences from 41047 to 54171 ...................... ---------- 9593 remaining sequences to the next cycle ---------- new table with 3034 representatives # comparing sequences from 44578 to 57581 ....................... ---------- 9456 remaining sequences to the next cycle ---------- new table with 3099 representatives # comparing sequences from 48125 to 61005 ...................... .......... 50000 finished 40872 clusters .. ---------- 8829 remaining sequences to the next cycle ---------- new table with 3560 representatives # comparing sequences from 52176 to 64917 ........................ ---------- 8520 remaining sequences to the next cycle ---------- new table with 3763 representatives # comparing sequences from 56397 to 68992 ..................... .......... 60000 finished 49694 clusters ---------- 8304 remaining sequences to the next cycle ---------- new table with 3748 representatives # comparing sequences from 60688 to 73135 ....................... ---------- 7958 remaining sequences to the next cycle ---------- new table with 4014 representatives # comparing sequences from 65177 to 77469 ....................... .......... 70000 finished 58622 clusters ---------- 7427 remaining sequences to the next cycle ---------- new table with 4347 representatives # comparing sequences from 70042 to 82167 ........................ ---------- 7957 remaining sequences to the next cycle ---------- new table with 3780 representatives # comparing sequences from 74210 to 86191 ........................ ---------- 7323 remaining sequences to the next cycle ---------- new table with 4221 representatives # comparing sequences from 78868 to 90688 ..................... .......... 80000 finished 67711 clusters ... ---------- 7593 remaining sequences to the next cycle ---------- new table with 3868 representatives # comparing sequences from 83095 to 94770 ........................ ---------- 7127 remaining sequences to the next cycle ---------- new table with 4158 representatives # comparing sequences from 87643 to 99161 ....................... .......... 90000 finished 76864 clusters .. ---------- 6880 remaining sequences to the next cycle ---------- new table with 4273 representatives # comparing sequences from 92281 to 103639 ......................... ---------- 6335 remaining sequences to the next cycle ---------- new table with 4631 representatives # comparing sequences from 97304 to 108489 ....................... .......... 100000 finished 86125 clusters .. ---------- 6249 remaining sequences to the next cycle ---------- new table with 4621 representatives # comparing sequences from 102240 to 113254 ........................ ---------- 5775 remaining sequences to the next cycle ---------- new table with 4899 representatives # comparing sequences from 107479 to 118313 ..................... .......... 110000 finished 95458 clusters .. ---------- 5681 remaining sequences to the next cycle ---------- new table with 4805 representatives # comparing sequences from 112632 to 123288 ......................... ---------- 5957 remaining sequences to the next cycle ---------- new table with 4403 representatives # comparing sequences from 117331 to 127825 ...................... .......... 120000 finished 104818 clusters .. ---------- 5451 remaining sequences to the next cycle ---------- new table with 4717 representatives # comparing sequences from 122374 to 132694 ........................ ---------- 5584 remaining sequences to the next cycle ---------- new table with 4469 representatives # comparing sequences from 127110 to 137267 ...................... .......... 130000 finished 114224 clusters .. ---------- 5222 remaining sequences to the next cycle ---------- new table with 4650 representatives # comparing sequences from 132045 to 142032 ...................... ---------- 5315 remaining sequences to the next cycle ---------- new table with 4419 representatives # comparing sequences from 136717 to 146542 ........................ ---------- 5376 remaining sequences to the next cycle ---------- new table with 4217 representatives # comparing sequences from 141166 to 150838 ....................... ---------- 4403 remaining sequences to the next cycle ---------- new table with 4973 representatives # comparing sequences from 146435 to 155925 ........................ .......... 150000 finished 133163 clusters . 100.0% ---------- 4135 remaining sequences to the next cycle ---------- new table with 5099 representatives # comparing sequences from 151790 to 161096 .......................... ---------- 3782 remaining sequences to the next cycle ---------- new table with 5232 representatives # comparing sequences from 157314 to 166429 ...................... .......... 160000 finished 142661 clusters . ---------- 3475 remaining sequences to the next cycle ---------- new table with 5366 representatives # comparing sequences from 162954 to 171875 .......................... ---------- 3142 remaining sequences to the next cycle ---------- new table with 5544 representatives # comparing sequences from 168733 to 177454 ...................... .......... 170000 finished 152201 clusters .. ---------- 3796 remaining sequences to the next cycle ---------- new table with 4691 representatives # comparing sequences from 173658 to 182210 ......................... ---------- 3320 remaining sequences to the next cycle ---------- new table with 4975 representatives # comparing sequences from 178890 to 187261 .................... .......... 180000 finished 161743 clusters ... ---------- 3529 remaining sequences to the next cycle ---------- new table with 4650 representatives # comparing sequences from 183732 to 191936 ....................... 100.0% ---------- 2968 remaining sequences to the next cycle ---------- new table with 5002 representatives # comparing sequences from 188968 to 196992 ..................... .......... 190000 finished 171315 clusters .... ---------- 2946 remaining sequences to the next cycle ---------- new table with 4873 representatives # comparing sequences from 194046 to 201895 ........................ ---------- 2521 remaining sequences to the next cycle ---------- new table with 5066 representatives # comparing sequences from 199374 to 207039 ................... .......... 200000 finished 180861 clusters .... ---------- 2692 remaining sequences to the next cycle ---------- new table with 4794 representatives # comparing sequences from 204347 to 211840 ....................... ---------- 2377 remaining sequences to the next cycle ---------- new table with 4860 representatives # comparing sequences from 209463 to 216780 ..................... .......... 210000 finished 190428 clusters .... ---------- 2339 remaining sequences to the next cycle ---------- new table with 4765 representatives # comparing sequences from 214441 to 221586 ........................ 100.0% ---------- 2772 remaining sequences to the next cycle ---------- new table with 4184 representatives # comparing sequences from 218814 to 225809 ...................... .......... 220000 finished 200007 clusters ... ---------- 2398 remaining sequences to the next cycle ---------- new table with 4416 representatives # comparing sequences from 223411 to 230247 ....................... ---------- 2638 remaining sequences to the next cycle ---------- new table with 3994 representatives # comparing sequences from 227609 to 234300 ....................... .......... 230000 finished 209563 clusters . ---------- 2336 remaining sequences to the next cycle ---------- new table with 4187 representatives # comparing sequences from 231964 to 238505 ......................... 100.0% ---------- 2173 remaining sequences to the next cycle ---------- new table with 4184 representatives # comparing sequences from 236332 to 242722 ..................... ---------- 2059 remaining sequences to the next cycle ---------- new table with 4146 representatives # comparing sequences from 240663 to 246904 ........................ ---------- 1804 remaining sequences to the next cycle ---------- new table with 4243 representatives # comparing sequences from 245100 to 251188 ........................ ---------- 1812 remaining sequences to the next cycle ---------- new table with 4109 representatives # comparing sequences from 249376 to 255317 .................... .......... 250000 finished 228736 clusters ... 100.0% ---------- 1703 remaining sequences to the next cycle ---------- new table with 4080 representatives # comparing sequences from 253614 to 259409 ....................... ---------- 2019 remaining sequences to the next cycle ---------- new table with 3637 representatives # comparing sequences from 257390 to 263054 ....................... .......... 260000 finished 238387 clusters . ---------- 1801 remaining sequences to the next cycle ---------- new table with 3732 representatives # comparing sequences from 261253 to 266784 ....................... ---------- 2030 remaining sequences to the next cycle ---------- new table with 3353 representatives # comparing sequences from 264754 to 270164 ........................ ---------- 1789 remaining sequences to the next cycle ---------- new table with 3508 representatives # comparing sequences from 268375 to 273661 ...................... .......... 270000 finished 248022 clusters . 100.0% ---------- 2047 remaining sequences to the next cycle ---------- new table with 3114 representatives # comparing sequences from 271614 to 276788 ...................... ---------- 2263 remaining sequences to the next cycle ---------- new table with 2824 representatives # comparing sequences from 274525 to 279598 ....................... 100.0% ---------- 1864 remaining sequences to the next cycle ---------- new table with 3113 representatives # comparing sequences from 277734 to 282697 ..................... .......... 280000 finished 257694 clusters ---------- 2024 remaining sequences to the next cycle ---------- new table with 2845 representatives # comparing sequences from 280673 to 285534 ....................... ---------- 1995 remaining sequences to the next cycle ---------- new table with 2762 representatives # comparing sequences from 283539 to 288302 ....................... ---------- 1711 remaining sequences to the next cycle ---------- new table with 2955 representatives # comparing sequences from 286591 to 291248 ..................... ---------- 1570 remaining sequences to the next cycle ---------- new table with 2972 representatives # comparing sequences from 289678 to 294229 ..................... .......... 290000 finished 267354 clusters .. ---------- 1774 remaining sequences to the next cycle ---------- new table with 2675 representatives # comparing sequences from 292455 to 296910 ...................... ---------- 1629 remaining sequences to the next cycle ---------- new table with 2736 representatives # comparing sequences from 295281 to 299639 ...................... 100.0% ---------- 1917 remaining sequences to the next cycle ---------- new table with 2354 representatives # comparing sequences from 297722 to 301996 ....................... .......... 300000 finished 276984 clusters 100.0% ---------- 1661 remaining sequences to the next cycle ---------- new table with 2508 representatives # comparing sequences from 300335 to 304518 ...................... ---------- 1550 remaining sequences to the next cycle ---------- new table with 2536 representatives # comparing sequences from 302968 to 307061 ....................... ---------- 1653 remaining sequences to the next cycle ---------- new table with 2358 representatives # comparing sequences from 305408 to 309417 ..................... ---------- 1547 remaining sequences to the next cycle ---------- new table with 2384 representatives # comparing sequences from 307870 to 311794 ....................... .......... 310000 finished 286635 clusters ---------- 1716 remaining sequences to the next cycle ---------- new table with 2119 representatives # comparing sequences from 310078 to 313926 ..................... ---------- 2040 remaining sequences to the next cycle ---------- new table with 1743 representatives # comparing sequences from 311886 to 315671 ...................... ---------- 1869 remaining sequences to the next cycle ---------- new table with 1859 representatives # comparing sequences from 313802 to 317521 ..................... ---------- 1746 remaining sequences to the next cycle ---------- new table with 1900 representatives # comparing sequences from 315775 to 319426 ...................... ---------- 1745 remaining sequences to the next cycle ---------- new table with 1858 representatives # comparing sequences from 317681 to 321266 ...................... ---------- 1505 remaining sequences to the next cycle ---------- new table with 2023 representatives # comparing sequences from 319761 to 323275 ..................... .......... 320000 finished 296333 clusters . ---------- 1425 remaining sequences to the next cycle ---------- new table with 2026 representatives # comparing sequences from 321850 to 325292 ..................... ---------- 1557 remaining sequences to the next cycle ---------- new table with 1834 representatives # comparing sequences from 323735 to 327112 ..................... ---------- 1420 remaining sequences to the next cycle ---------- new table with 1903 representatives # comparing sequences from 325692 to 329001 ...................... ---------- 1346 remaining sequences to the next cycle ---------- new table with 1912 representatives # comparing sequences from 327655 to 330896 ...................... ---------- 1443 remaining sequences to the next cycle ---------- new table with 1742 representatives # comparing sequences from 329453 to 332632 ..................... .......... 330000 finished 306047 clusters . ---------- 1342 remaining sequences to the next cycle ---------- new table with 1771 representatives # comparing sequences from 331290 to 334406 ...................... ---------- 1351 remaining sequences to the next cycle ---------- new table with 1721 representatives # comparing sequences from 333055 to 336110 ..................... ---------- 1282 remaining sequences to the next cycle ---------- new table with 1721 representatives # comparing sequences from 334828 to 337822 ...................... ---------- 1467 remaining sequences to the next cycle ---------- new table with 1494 representatives # comparing sequences from 336355 to 339296 ..................... 100.0% ---------- 1484 remaining sequences to the next cycle ---------- new table with 1418 representatives # comparing sequences from 337812 to 340703 ...................... ---------- 1493 remaining sequences to the next cycle ---------- new table with 1355 representatives # comparing sequences from 339210 to 342053 .................... .......... 340000 finished 315766 clusters ---------- 1349 remaining sequences to the next cycle ---------- new table with 1461 representatives # comparing sequences from 340704 to 343495 ..................... ---------- 1306 remaining sequences to the next cycle ---------- new table with 1444 representatives # comparing sequences from 342189 to 344929 ..................... ---------- 1371 remaining sequences to the next cycle ---------- new table with 1327 representatives # comparing sequences from 343558 to 346251 ..................... ---------- 1392 remaining sequences to the next cycle ---------- new table with 1255 representatives # comparing sequences from 344859 to 347507 ...................... ---------- 1285 remaining sequences to the next cycle ---------- new table with 1332 representatives # comparing sequences from 346222 to 348823 .................... ---------- 1263 remaining sequences to the next cycle ---------- new table with 1298 representatives # comparing sequences from 347560 to 350115 .................... ---------- 1217 remaining sequences to the next cycle ---------- new table with 1302 representatives # comparing sequences from 348898 to 351407 ..................... .......... 350000 finished 325485 clusters ---------- 1225 remaining sequences to the next cycle ---------- new table with 1251 representatives # comparing sequences from 350182 to 352647 ................... ---------- 1305 remaining sequences to the next cycle ---------- new table with 1129 representatives # comparing sequences from 351342 to 353767 ..................... ---------- 1252 remaining sequences to the next cycle ---------- new table with 1149 representatives # comparing sequences from 352515 to 354899 ..................... ---------- 1180 remaining sequences to the next cycle ---------- new table with 1178 representatives # comparing sequences from 353719 to 356062 ..................... ---------- 1252 remaining sequences to the next cycle ---------- new table with 1064 representatives # comparing sequences from 354810 to 357115 ................... ---------- 1201 remaining sequences to the next cycle ---------- new table with 1074 representatives # comparing sequences from 355914 to 358181 .................... ---------- 1181 remaining sequences to the next cycle ---------- new table with 1060 representatives # comparing sequences from 357000 to 359230 ..................... ---------- 1128 remaining sequences to the next cycle ---------- new table with 1074 representatives # comparing sequences from 358102 to 360294 ..................... ---------- 1132 remaining sequences to the next cycle ---------- new table with 1043 representatives # comparing sequences from 359162 to 361317 ................... ---------- 1476 remaining sequences to the next cycle ---------- new table with 653 representatives # comparing sequences from 359841 to 361973 ..................... .......... 360000 finished 335242 clusters ---------- 1299 remaining sequences to the next cycle ---------- new table with 824 representatives # comparing sequences from 360674 to 362777 ..................... ---------- 1221 remaining sequences to the next cycle ---------- new table with 853 representatives # comparing sequences from 361556 to 363628 ..................... 100.0% ---------- 1196 remaining sequences to the next cycle ---------- new table with 851 representatives # comparing sequences from 362432 to 364474 ..................... ---------- 1178 remaining sequences to the next cycle ---------- new table with 850 representatives # comparing sequences from 363296 to 365308 ..................... ---------- 1179 remaining sequences to the next cycle ---------- new table with 825 representatives # comparing sequences from 364129 to 366113 .................... ---------- 1068 remaining sequences to the next cycle ---------- new table with 891 representatives # comparing sequences from 365045 to 366997 ................... ---------- 1039 remaining sequences to the next cycle ---------- new table with 891 representatives # comparing sequences from 365958 to 367879 .................... ---------- 995 remaining sequences to the next cycle ---------- new table with 906 representatives # comparing sequences from 366884 to 368773 ..................... ---------- 1027 remaining sequences to the next cycle ---------- new table with 848 representatives # comparing sequences from 367746 to 369605 .................... ---------- 986 remaining sequences to the next cycle ---------- new table with 858 representatives # comparing sequences from 368619 to 370448 ..................... ---------- 993 remaining sequences to the next cycle ---------- new table with 819 representatives # comparing sequences from 369455 to 371255 ..................... .......... 370000 finished 345042 clusters 100.0% ---------- 967 remaining sequences to the next cycle ---------- new table with 818 representatives # comparing sequences from 370288 to 372059 ..................... ---------- 977 remaining sequences to the next cycle ---------- new table with 777 representatives # comparing sequences from 371082 to 372826 .................... ---------- 923 remaining sequences to the next cycle ---------- new table with 792 representatives # comparing sequences from 371903 to 373619 .................... ---------- 1005 remaining sequences to the next cycle ---------- new table with 698 representatives # comparing sequences from 372614 to 374305 ..................... 100.0% ---------- 943 remaining sequences to the next cycle ---------- new table with 738 representatives # comparing sequences from 373362 to 375027 ..................... ---------- 929 remaining sequences to the next cycle ---------- new table with 717 representatives # comparing sequences from 374098 to 375738 ................... ---------- 972 remaining sequences to the next cycle ---------- new table with 661 representatives # comparing sequences from 374766 to 376383 .................... ---------- 933 remaining sequences to the next cycle ---------- new table with 664 representatives # comparing sequences from 375450 to 377043 .................... ---------- 964 remaining sequences to the next cycle ---------- new table with 622 representatives # comparing sequences from 376079 to 377651 ................... ---------- 953 remaining sequences to the next cycle ---------- new table with 601 representatives # comparing sequences from 376698 to 378248 ..................... ---------- 875 remaining sequences to the next cycle ---------- new table with 665 representatives # comparing sequences from 377373 to 378900 ..................... ---------- 872 remaining sequences to the next cycle ---------- new table with 643 representatives # comparing sequences from 378028 to 379532 ................... ---------- 847 remaining sequences to the next cycle ---------- new table with 650 representatives # comparing sequences from 378685 to 380167 .................... ---------- 878 remaining sequences to the next cycle ---------- new table with 578 representatives # comparing sequences from 379289 to 380750 .................... 100.0% ---------- 887 remaining sequences to the next cycle ---------- new table with 568 representatives # comparing sequences from 379863 to 381304 ..................... .......... 380000 finished 354827 clusters ---------- 860 remaining sequences to the next cycle ---------- new table with 556 representatives # comparing sequences from 380444 to 381865 ..................... ---------- 818 remaining sequences to the next cycle ---------- new table with 593 representatives # comparing sequences from 381047 to 382447 .................... ---------- 800 remaining sequences to the next cycle ---------- new table with 584 representatives # comparing sequences from 381647 to 383027 ................. ---------- 822 remaining sequences to the next cycle ---------- new table with 547 representatives # comparing sequences from 382205 to 383565 ................... ---------- 830 remaining sequences to the next cycle ---------- new table with 512 representatives # comparing sequences from 382735 to 384077 ..................... ---------- 831 remaining sequences to the next cycle ---------- new table with 507 representatives # comparing sequences from 383246 to 384570 ................. ---------- 762 remaining sequences to the next cycle ---------- new table with 546 representatives # comparing sequences from 383808 to 385113 .................... ---------- 766 remaining sequences to the next cycle ---------- new table with 530 representatives # comparing sequences from 384347 to 385634 .................. 100.0% ---------- 755 remaining sequences to the next cycle ---------- new table with 517 representatives # comparing sequences from 384879 to 386147 .................... ---------- 749 remaining sequences to the next cycle ---------- new table with 515 representatives # comparing sequences from 385398 to 386648 ................... ---------- 767 remaining sequences to the next cycle ---------- new table with 471 representatives # comparing sequences from 385881 to 387115 .................... ---------- 713 remaining sequences to the next cycle ---------- new table with 505 representatives # comparing sequences from 386402 to 387618 .................... ---------- 772 remaining sequences to the next cycle ---------- new table with 443 representatives # comparing sequences from 386846 to 388046 ..................... ---------- 741 remaining sequences to the next cycle ---------- new table with 438 representatives # comparing sequences from 387305 to 388490 ................... ---------- 733 remaining sequences to the next cycle ---------- new table with 437 representatives # comparing sequences from 387757 to 388926 ................... 100.0% ---------- 743 remaining sequences to the next cycle ---------- new table with 419 representatives # comparing sequences from 388183 to 389337 .................... ---------- 689 remaining sequences to the next cycle ---------- new table with 442 representatives # comparing sequences from 388648 to 389786 .................... ---------- 681 remaining sequences to the next cycle ---------- new table with 453 representatives # comparing sequences from 389105 to 390227 .................... ---------- 671 remaining sequences to the next cycle ---------- new table with 439 representatives # comparing sequences from 389556 to 390663 .................... 100.0% ---------- 696 remaining sequences to the next cycle ---------- new table with 401 representatives # comparing sequences from 389967 to 391060 ................... .......... 390000 finished 364581 clusters ---------- 674 remaining sequences to the next cycle ---------- new table with 415 representatives # comparing sequences from 390386 to 391464 ................... ---------- 647 remaining sequences to the next cycle ---------- new table with 420 representatives # comparing sequences from 390817 to 391880 .................... ---------- 668 remaining sequences to the next cycle ---------- new table with 390 representatives # comparing sequences from 391212 to 392262 .................... ---------- 640 remaining sequences to the next cycle ---------- new table with 405 representatives # comparing sequences from 391622 to 392658 .................... ---------- 623 remaining sequences to the next cycle ---------- new table with 399 representatives # comparing sequences from 392035 to 393056 ................... ---------- 614 remaining sequences to the next cycle ---------- new table with 401 representatives # comparing sequences from 392442 to 393449 ................... ---------- 616 remaining sequences to the next cycle ---------- new table with 384 representatives # comparing sequences from 392833 to 393827 ..................... ---------- 592 remaining sequences to the next cycle ---------- new table with 386 representatives # comparing sequences from 393235 to 394215 ................... ---------- 542 remaining sequences to the next cycle ---------- new table with 434 representatives # comparing sequences from 393673 to 394638 .................... ---------- 561 remaining sequences to the next cycle ---------- new table with 397 representatives # comparing sequences from 394077 to 395028 ................... ---------- 529 remaining sequences to the next cycle ---------- new table with 407 representatives # comparing sequences from 394499 to 395435 .................... ---------- 715 remaining sequences to the next cycle ---------- new table with 216 representatives # comparing sequences from 394720 to 395649 ..................... 100.0% ---------- 583 remaining sequences to the next cycle ---------- new table with 344 representatives # comparing sequences from 395066 to 395983 .................... ---------- 654 remaining sequences to the next cycle ---------- new table with 255 representatives # comparing sequences from 395329 to 396237 ................... ---------- 577 remaining sequences to the next cycle ---------- new table with 323 representatives # comparing sequences from 395660 to 396556 .................... 100.0% ---------- 580 remaining sequences to the next cycle ---------- new table with 310 representatives # comparing sequences from 395976 to 396862 .................... ---------- 560 remaining sequences to the next cycle ---------- new table with 324 representatives # comparing sequences from 396302 to 397176 .................. 100.0% ---------- 537 remaining sequences to the next cycle ---------- new table with 325 representatives # comparing sequences from 396639 to 397502 ................... ---------- 525 remaining sequences to the next cycle ---------- new table with 327 representatives # comparing sequences from 396977 to 397828 .................... ---------- 527 remaining sequences to the next cycle ---------- new table with 321 representatives # comparing sequences from 397301 to 398141 .................... ---------- 532 remaining sequences to the next cycle ---------- new table with 307 representatives # comparing sequences from 397609 to 398438 ................... 100.0% ---------- 500 remaining sequences to the next cycle ---------- new table with 315 representatives # comparing sequences from 397938 to 398756 ..................... ---------- 495 remaining sequences to the next cycle ---------- new table with 309 representatives # comparing sequences from 398261 to 399068 .................... ---------- 527 remaining sequences to the next cycle ---------- new table with 279 representatives # comparing sequences from 398541 to 399338 ................... ---------- 511 remaining sequences to the next cycle ---------- new table with 286 representatives # comparing sequences from 398827 to 399614 .................... ---------- 485 remaining sequences to the next cycle ---------- new table with 290 representatives # comparing sequences from 399129 to 399906 ................... ---------- 476 remaining sequences to the next cycle ---------- new table with 288 representatives # comparing sequences from 399430 to 400196 ................... ---------- 493 remaining sequences to the next cycle ---------- new table with 268 representatives # comparing sequences from 399703 to 400460 ................... ---------- 484 remaining sequences to the next cycle ---------- new table with 272 representatives # comparing sequences from 399976 to 400724 .................... .......... 400000 finished 374369 clusters 100.0% ---------- 459 remaining sequences to the next cycle ---------- new table with 280 representatives # comparing sequences from 400265 to 401003 .................... ---------- 466 remaining sequences to the next cycle ---------- new table with 260 representatives # comparing sequences from 400537 to 401265 ................... ---------- 446 remaining sequences to the next cycle ---------- new table with 275 representatives # comparing sequences from 400819 to 401538 ..................... ---------- 478 remaining sequences to the next cycle ---------- new table with 241 representatives # comparing sequences from 401060 to 401770 .................... ---------- 449 remaining sequences to the next cycle ---------- new table with 257 representatives # comparing sequences from 401321 to 402022 .................... ---------- 437 remaining sequences to the next cycle ---------- new table with 258 representatives # comparing sequences from 401585 to 402277 ................... ---------- 411 remaining sequences to the next cycle ---------- new table with 269 representatives # comparing sequences from 401866 to 402548 ..................... ---------- 430 remaining sequences to the next cycle ---------- new table with 249 representatives # comparing sequences from 402118 to 402792 ................... ---------- 425 remaining sequences to the next cycle ---------- new table with 248 representatives # comparing sequences from 402367 to 403032 .................. ---------- 414 remaining sequences to the next cycle ---------- new table with 243 representatives # comparing sequences from 402618 to 403274 ................... ---------- 390 remaining sequences to the next cycle ---------- new table with 254 representatives # comparing sequences from 402884 to 403531 ..................... 100.0% ---------- 517 remaining sequences to the next cycle ---------- new table with 125 representatives # comparing sequences from 403014 to 403657 .................... 100.0% ---------- 428 remaining sequences to the next cycle ---------- new table with 208 representatives # comparing sequences from 403229 to 403864 .................... ---------- 505 remaining sequences to the next cycle ---------- new table with 130 representatives # comparing sequences from 403359 to 403990 .................... ---------- 426 remaining sequences to the next cycle ---------- new table with 204 representatives # comparing sequences from 403564 to 404188 ................... ---------- 447 remaining sequences to the next cycle ---------- new table with 174 representatives # comparing sequences from 403741 to 404359 ................... ---------- 406 remaining sequences to the next cycle ---------- new table with 205 representatives # comparing sequences from 403953 to 404563 .................... ---------- 407 remaining sequences to the next cycle ---------- new table with 197 representatives # comparing sequences from 404156 to 404759 .................. 100.0% ---------- 389 remaining sequences to the next cycle ---------- new table with 205 representatives # comparing sequences from 404370 to 404966 .................... ---------- 412 remaining sequences to the next cycle ---------- new table with 184 representatives # comparing sequences from 404554 to 405144 .................. ---------- 383 remaining sequences to the next cycle ---------- new table with 207 representatives # comparing sequences from 404761 to 405344 .................. ---------- 428 remaining sequences to the next cycle ---------- new table with 152 representatives # comparing sequences from 404916 to 405493 ..................... ---------- 356 remaining sequences to the next cycle ---------- new table with 211 representatives # comparing sequences from 405137 to 405707 ................... ---------- 358 remaining sequences to the next cycle ---------- new table with 205 representatives # comparing sequences from 405349 to 405911 ................... ---------- 346 remaining sequences to the next cycle ---------- new table with 207 representatives # comparing sequences from 405565 to 406120 .................... ---------- 363 remaining sequences to the next cycle ---------- new table with 192 representatives # comparing sequences from 405757 to 406305 ................... ---------- 370 remaining sequences to the next cycle ---------- new table with 178 representatives # comparing sequences from 405935 to 406477 ..................... ---------- 362 remaining sequences to the next cycle ---------- new table with 179 representatives # comparing sequences from 406115 to 406651 ................... ---------- 334 remaining sequences to the next cycle ---------- new table with 199 representatives # comparing sequences from 406317 to 406846 ................... 100.0% ---------- 325 remaining sequences to the next cycle ---------- new table with 195 representatives # comparing sequences from 406521 to 407043 .................. ---------- 334 remaining sequences to the next cycle ---------- new table with 179 representatives # comparing sequences from 406709 to 407224 .................... ---------- 338 remaining sequences to the next cycle ---------- new table with 175 representatives # comparing sequences from 406886 to 407395 ..................... ---------- 326 remaining sequences to the next cycle ---------- new table with 183 representatives # comparing sequences from 407069 to 407572 ................... ---------- 339 remaining sequences to the next cycle ---------- new table with 164 representatives # comparing sequences from 407233 to 407730 .................. ---------- 324 remaining sequences to the next cycle ---------- new table with 165 representatives # comparing sequences from 407406 to 407897 ................. ---------- 308 remaining sequences to the next cycle ---------- new table with 178 representatives # comparing sequences from 407589 to 408074 .................. ---------- 344 remaining sequences to the next cycle ---------- new table with 138 representatives # comparing sequences from 407730 to 408210 .................. ---------- 302 remaining sequences to the next cycle ---------- new table with 172 representatives # comparing sequences from 407908 to 408382 .................... ---------- 326 remaining sequences to the next cycle ---------- new table with 145 representatives # comparing sequences from 408056 to 408525 .................. ---------- 304 remaining sequences to the next cycle ---------- new table with 164 representatives # comparing sequences from 408221 to 408684 ................. ---------- 309 remaining sequences to the next cycle ---------- new table with 154 representatives # comparing sequences from 408375 to 408833 .................. ---------- 300 remaining sequences to the next cycle ---------- new table with 152 representatives # comparing sequences from 408533 to 408986 ................... ---------- 285 remaining sequences to the next cycle ---------- new table with 160 representatives # comparing sequences from 408701 to 409148 .................... ---------- 273 remaining sequences to the next cycle ---------- new table with 164 representatives # comparing sequences from 408875 to 409316 .................... ---------- 276 remaining sequences to the next cycle ---------- new table with 160 representatives # comparing sequences from 409040 to 409475 .................... ---------- 276 remaining sequences to the next cycle ---------- new table with 156 representatives # comparing sequences from 409199 to 409629 .................... ---------- 291 remaining sequences to the next cycle ---------- new table with 139 representatives # comparing sequences from 409338 to 409763 ................... ---------- 276 remaining sequences to the next cycle ---------- new table with 149 representatives # comparing sequences from 409487 to 409907 ................... ---------- 270 remaining sequences to the next cycle ---------- new table with 148 representatives # comparing sequences from 409637 to 410051 .................... ---------- 260 remaining sequences to the next cycle ---------- new table with 151 representatives # comparing sequences from 409791 to 410200 .................... ---------- 252 remaining sequences to the next cycle ---------- new table with 150 representatives # comparing sequences from 409948 to 410352 .................... .......... 410000 finished 384132 clusters ---------- 253 remaining sequences to the next cycle ---------- new table with 145 representatives # comparing sequences from 410099 to 410498 ................... ---------- 249 remaining sequences to the next cycle ---------- new table with 143 representatives # comparing sequences from 410249 to 410642 .................... ---------- 245 remaining sequences to the next cycle ---------- new table with 144 representatives # comparing sequences from 410397 to 410785 .................... ---------- 244 remaining sequences to the next cycle ---------- new table with 144 representatives # comparing sequences from 410541 to 410924 ................... ---------- 243 remaining sequences to the next cycle ---------- new table with 140 representatives # comparing sequences from 410681 to 411059 .................... ---------- 246 remaining sequences to the next cycle ---------- new table with 131 representatives # comparing sequences from 410813 to 411187 .................... ---------- 230 remaining sequences to the next cycle ---------- new table with 136 representatives # comparing sequences from 410957 to 411326 .................... ---------- 226 remaining sequences to the next cycle ---------- new table with 142 representatives # comparing sequences from 411100 to 411464 ................... ---------- 253 remaining sequences to the next cycle ---------- new table with 107 representatives # comparing sequences from 411211 to 411571 ................... ---------- 216 remaining sequences to the next cycle ---------- new table with 137 representatives # comparing sequences from 411355 to 411710 .................. ---------- 213 remaining sequences to the next cycle ---------- new table with 135 representatives # comparing sequences from 411497 to 411847 ................... 100.0% ---------- 227 remaining sequences to the next cycle ---------- new table with 122 representatives # comparing sequences from 411620 to 411966 .................. ---------- 223 remaining sequences to the next cycle ---------- new table with 122 representatives # comparing sequences from 411743 to 412085 ................... ---------- 225 remaining sequences to the next cycle ---------- new table with 117 representatives # comparing sequences from 411860 to 412198 .................. ---------- 224 remaining sequences to the next cycle ---------- new table with 114 representatives # comparing sequences from 411974 to 412308 .................... 100.0% ---------- 207 remaining sequences to the next cycle ---------- new table with 124 representatives # comparing sequences from 412101 to 412430 .................. ---------- 202 remaining sequences to the next cycle ---------- new table with 122 representatives # comparing sequences from 412228 to 412553 .................. ---------- 217 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 412336 to 412657 ................. ---------- 200 remaining sequences to the next cycle ---------- new table with 118 representatives # comparing sequences from 412457 to 412774 .................... ---------- 216 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 412558 to 412872 .................... ---------- 196 remaining sequences to the next cycle ---------- new table with 116 representatives # comparing sequences from 412676 to 412986 ................... ---------- 207 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 412779 to 413085 ................... 100.0% ---------- 198 remaining sequences to the next cycle ---------- new table with 108 representatives # comparing sequences from 412887 to 413189 ................... ---------- 202 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 412987 to 413286 ..................... ---------- 195 remaining sequences to the next cycle ---------- new table with 104 representatives # comparing sequences from 413091 to 413386 .................... ---------- 195 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 413191 to 413483 ................... ---------- 185 remaining sequences to the next cycle ---------- new table with 102 representatives # comparing sequences from 413298 to 413586 ................... ---------- 184 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 413402 to 413687 ................... ---------- 182 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 413505 to 413786 ................... ---------- 178 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 413608 to 413886 .................... ---------- 174 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 413712 to 413986 .................... ---------- 171 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 413815 to 414085 ................... ---------- 164 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 413921 to 414188 .................... ---------- 165 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 414023 to 414286 .................. ---------- 163 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 414123 to 414383 .................. ---------- 159 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 414224 to 414480 .................... ---------- 156 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 414324 to 414577 ................... ---------- 151 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 414426 to 414675 ................... ---------- 146 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 414529 to 414775 .................. ---------- 143 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 414632 to 414874 ................... ---------- 140 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 414734 to 414973 .................... ---------- 135 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 414838 to 415073 ................... ---------- 133 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 414940 to 415172 .................. ---------- 128 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 415044 to 415272 .................. ---------- 126 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 415146 to 415370 .................. ---------- 122 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 415248 to 415469 ................... ---------- 121 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 415348 to 415566 .................... ---------- 118 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 415448 to 415662 .................... ---------- 114 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 415548 to 415759 ................... ---------- 111 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 415648 to 415855 .................. ---------- 103 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 415752 to 415956 ................... ---------- 103 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 415853 to 416053 .................. ---------- 98 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 415955 to 416152 ..................... ---------- 94 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 416058 to 416251 ................... ---------- 92 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 416159 to 416349 .................. ---------- 82 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 416267 to 416453 ................... ---------- 84 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 416369 to 416551 ................... ---------- 81 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 416470 to 416649 .................... ---------- 78 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 416571 to 416746 .................... ---------- 75 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 416671 to 416843 ................... ---------- 72 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 416771 to 416939 ................... ---------- 68 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 416871 to 417036 ................... ---------- 61 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 416975 to 417136 .................. ---------- 57 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 417079 to 417237 .................... ---------- 55 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 417182 to 417336 .................. ---------- 50 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 417286 to 417437 ................... ---------- 47 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 417390 to 417537 .................. ---------- 43 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 417494 to 417638 ................ ---------- 40 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 417598 to 417738 .................. ---------- 40 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 417698 to 417834 ................... ---------- 36 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 417798 to 417931 ................... ---------- 33 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 417898 to 418028 ................... ---------- 30 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 417998 to 418124 ................... ---------- 23 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 418101 to 418224 ................. ---------- 20 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 418204 to 418323 .................... ---------- 14 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 418309 to 418424 ................... ---------- 10 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 418414 to 418526 ................... ---------- 9 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 418517 to 418625 ................. ---------- 2 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 418623 to 418728 ................. ---------- 2 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 418726 to 418827 ................---------- new table with 99 representatives # comparing sequences from 418827 to 418925 ...................---------- new table with 98 representatives # comparing sequences from 418925 to 419019 ...................---------- new table with 93 representatives # comparing sequences from 419019 to 419110 ..................---------- new table with 91 representatives # comparing sequences from 419110 to 419198 ..................---------- new table with 88 representatives # comparing sequences from 419198 to 419283 .................---------- new table with 84 representatives # comparing sequences from 419283 to 419365 ................---------- new table with 77 representatives # comparing sequences from 419365 to 419444 ...................---------- new table with 76 representatives # comparing sequences from 419444 to 419520 ..................---------- new table with 74 representatives # comparing sequences from 419520 to 419594 ..................---------- new table with 70 representatives # comparing sequences from 419594 to 419665 ..................---------- new table with 69 representatives # comparing sequences from 419665 to 419734 .................---------- new table with 67 representatives # comparing sequences from 419734 to 419800 ................---------- new table with 64 representatives # comparing sequences from 419800 to 419864 ................---------- new table with 62 representatives # comparing sequences from 419864 to 419926 ................---------- new table with 60 representatives # comparing sequences from 419926 to 419986 .............---------- new table with 57 representatives # comparing sequences from 419986 to 420044 .................... .......... 420000 finished 393898 clusters ---------- new table with 58 representatives # comparing sequences from 420044 to 420100 ...................---------- new table with 56 representatives # comparing sequences from 420100 to 420154 ..................---------- new table with 54 representatives # comparing sequences from 420154 to 420206 .................---------- new table with 52 representatives # comparing sequences from 420206 to 420256 .................---------- new table with 50 representatives # comparing sequences from 420256 to 420304 ................---------- new table with 48 representatives # comparing sequences from 420304 to 420351 ...............---------- new table with 47 representatives # comparing sequences from 420351 to 420396 ...............---------- new table with 45 representatives # comparing sequences from 420396 to 420439 ...............---------- new table with 43 representatives # comparing sequences from 420439 to 420481 ..............---------- new table with 42 representatives # comparing sequences from 420481 to 420522 ..........---------- new table with 37 representatives # comparing sequences from 420522 to 420561 ....................---------- new table with 39 representatives # comparing sequences from 420561 to 420599 ..................---------- new table with 35 representatives # comparing sequences from 420599 to 420635 ..................---------- new table with 33 representatives # comparing sequences from 420635 to 420670 ................---------- new table with 33 representatives # comparing sequences from 420670 to 421670 ....................---------- new table with 971 representatives 421670 finished 395527 clusters Approximated maximum memory consumption: 1126M writing new database writing clustering information program completed ! Total CPU time 4683.34 ================================================================ Program: CD-HIT, V4.8.1 (+OpenMP), Jul 24 2019, 13:13:52 Command: /gscratch/srlab/programs/cd-hit-v4.8.1-2019-0228/cd-hit-est -o EPI99.cdhit -c 0.98 -i /gscratch/srlab/sam/data/P_generosa/transcriptomes/larvae/EPI99/Trinity.fasta -p 1 -d 0 -b 3 -T 27 -M 0 Started: Mon Jul 29 12:25:54 2019 ================================================================ Output ---------------------------------------------------------------- total seq: 425165 longest and shortest : 24184 and 178 Total letters: 302222999 Sequences have been sorted Approximated minimal memory consumption: Sequence : 361M Buffer : 27 X 19M = 513M Table : 2 X 23M = 47M Miscellaneous : 9M Total : 931M Table limit with the given memory limit: Max number of representatives: 458974 Max number of word counting entries: 73962783 # comparing sequences from 0 to 968 ---------- new table with 668 representatives # comparing sequences from 968 to 15595 ...................... ---------- 13582 remaining sequences to the next cycle ---------- new table with 721 representatives # comparing sequences from 2013 to 16604 .................... ---------- 13457 remaining sequences to the next cycle ---------- new table with 780 representatives # comparing sequences from 3147 to 17699 ..................... ---------- 13265 remaining sequences to the next cycle ---------- new table with 841 representatives # comparing sequences from 4434 to 18941 ..................... ---------- 12902 remaining sequences to the next cycle ---------- new table with 1090 representatives # comparing sequences from 6039 to 20491 .................... ---------- 12670 remaining sequences to the next cycle ---------- new table with 1196 representatives # comparing sequences from 7821 to 22212 .................. ---------- 12577 remaining sequences to the next cycle ---------- new table with 1215 representatives # comparing sequences from 9635 to 23963 .................... .......... 10000 finished 6767 clusters ---------- 12123 remaining sequences to the next cycle ---------- new table with 1491 representatives # comparing sequences from 11840 to 26092 ...................... ---------- 11930 remaining sequences to the next cycle ---------- new table with 1635 representatives # comparing sequences from 14162 to 28334 ...................... ---------- 11523 remaining sequences to the next cycle ---------- new table with 1850 representatives # comparing sequences from 16811 to 30892 .................... ---------- 11443 remaining sequences to the next cycle ---------- new table with 1918 representatives # comparing sequences from 19449 to 33439 ...................... ---------- 11106 remaining sequences to the next cycle ---------- new table with 2022 representatives # comparing sequences from 22333 to 36223 ...................... 100.0% ---------- 10728 remaining sequences to the next cycle ---------- new table with 2239 representatives # comparing sequences from 25495 to 39276 .................... ---------- 10587 remaining sequences to the next cycle ---------- new table with 2276 representatives # comparing sequences from 28689 to 42360 .................... ---------- 10279 remaining sequences to the next cycle ---------- new table with 2446 representatives # comparing sequences from 32081 to 45635 ..................... ---------- 9870 remaining sequences to the next cycle ---------- new table with 2735 representatives # comparing sequences from 35765 to 49192 ..................... ---------- 9321 remaining sequences to the next cycle ---------- new table with 3040 representatives # comparing sequences from 39871 to 53157 ..................... .......... 40000 finished 28260 clusters .. ---------- 9400 remaining sequences to the next cycle ---------- new table with 2915 representatives # comparing sequences from 43757 to 56909 ........................ ---------- 8683 remaining sequences to the next cycle ---------- new table with 3383 representatives # comparing sequences from 48226 to 61223 ....................... ---------- 8514 remaining sequences to the next cycle ---------- new table with 3431 representatives # comparing sequences from 52709 to 65552 ....................... ---------- 7991 remaining sequences to the next cycle ---------- new table with 3765 representatives # comparing sequences from 57561 to 70237 .................... .......... 60000 finished 43541 clusters . ---------- 7861 remaining sequences to the next cycle ---------- new table with 3753 representatives # comparing sequences from 62376 to 74885 ........................ ---------- 7848 remaining sequences to the next cycle ---------- new table with 3706 representatives # comparing sequences from 67037 to 79386 ..................... .......... 70000 finished 51453 clusters . ---------- 7716 remaining sequences to the next cycle ---------- new table with 3694 representatives # comparing sequences from 71670 to 83859 ....................... ---------- 7080 remaining sequences to the next cycle ---------- new table with 4149 representatives # comparing sequences from 76779 to 88792 ....................... .......... 80000 finished 59591 clusters . ---------- 7185 remaining sequences to the next cycle ---------- new table with 3958 representatives # comparing sequences from 81607 to 93453 ....................... ---------- 6487 remaining sequences to the next cycle ---------- new table with 4424 representatives # comparing sequences from 86966 to 98628 ...................... .......... 90000 finished 67842 clusters .. 100.0% ---------- 6393 remaining sequences to the next cycle ---------- new table with 4368 representatives # comparing sequences from 92235 to 103715 ........................ ---------- 5919 remaining sequences to the next cycle ---------- new table with 4669 representatives # comparing sequences from 97796 to 109084 ...................... .......... 100000 finished 76230 clusters .. ---------- 6187 remaining sequences to the next cycle ---------- new table with 4291 representatives # comparing sequences from 102897 to 114009 .......................... ---------- 5822 remaining sequences to the next cycle ---------- new table with 4545 representatives # comparing sequences from 108187 to 119117 ..................... .......... 110000 finished 84754 clusters ... ---------- 5711 remaining sequences to the next cycle ---------- new table with 4483 representatives # comparing sequences from 113406 to 124156 ....................... ---------- 5963 remaining sequences to the next cycle ---------- new table with 4111 representatives # comparing sequences from 118193 to 128778 .................... .......... 120000 finished 93364 clusters ... ---------- 5591 remaining sequences to the next cycle ---------- new table with 4348 representatives # comparing sequences from 123187 to 133600 ..................... ---------- 5727 remaining sequences to the next cycle ---------- new table with 4102 representatives # comparing sequences from 127873 to 138124 ..................... .......... 130000 finished 102123 clusters .. ---------- 5216 remaining sequences to the next cycle ---------- new table with 4434 representatives # comparing sequences from 132908 to 142985 .......................... 100.0% ---------- 4022 remaining sequences to the next cycle ---------- new table with 5333 representatives # comparing sequences from 138963 to 148832 ...................... .......... 140000 finished 110933 clusters .... ---------- 4156 remaining sequences to the next cycle ---------- new table with 5034 representatives # comparing sequences from 144676 to 154348 ....................... ---------- 4688 remaining sequences to the next cycle ---------- new table with 4429 representatives # comparing sequences from 149660 to 159160 .................. .......... 150000 finished 119793 clusters .... ---------- 3789 remaining sequences to the next cycle ---------- new table with 5042 representatives # comparing sequences from 155371 to 164674 ........................ .......... 160000 finished 128633 clusters . ---------- 3229 remaining sequences to the next cycle ---------- new table with 5400 representatives # comparing sequences from 161445 to 170538 ......................... ---------- 3362 remaining sequences to the next cycle ---------- new table with 5131 representatives # comparing sequences from 167176 to 176072 ...................... .......... 170000 finished 137586 clusters ---------- 4138 remaining sequences to the next cycle ---------- new table with 4249 representatives # comparing sequences from 171934 to 180666 ......................... ---------- 3419 remaining sequences to the next cycle ---------- new table with 4736 representatives # comparing sequences from 177247 to 185795 ...................... .......... 180000 finished 146518 clusters .. ---------- 3656 remaining sequences to the next cycle ---------- new table with 4412 representatives # comparing sequences from 182139 to 190519 ....................... ---------- 3072 remaining sequences to the next cycle ---------- new table with 4812 representatives # comparing sequences from 187447 to 195644 ...................... .......... 190000 finished 155596 clusters .. ---------- 3357 remaining sequences to the next cycle ---------- new table with 4373 representatives # comparing sequences from 192287 to 200317 ..................... ---------- 3088 remaining sequences to the next cycle ---------- new table with 4487 representatives # comparing sequences from 197229 to 205088 ..................... .......... 200000 finished 164642 clusters . ---------- 3531 remaining sequences to the next cycle ---------- new table with 3931 representatives # comparing sequences from 201557 to 209267 ........................ ---------- 2676 remaining sequences to the next cycle ---------- new table with 4630 representatives # comparing sequences from 206591 to 214128 ..................... .......... 210000 finished 173818 clusters . ---------- 2177 remaining sequences to the next cycle ---------- new table with 4939 representatives # comparing sequences from 211951 to 219303 ........................ ---------- 1954 remaining sequences to the next cycle ---------- new table with 4953 representatives # comparing sequences from 217349 to 224515 ..................... .......... 220000 finished 183025 clusters . 100.0% ---------- 2595 remaining sequences to the next cycle ---------- new table with 4226 representatives # comparing sequences from 221920 to 228928 ......................... ---------- 2579 remaining sequences to the next cycle ---------- new table with 4094 representatives # comparing sequences from 226349 to 233204 ....................... ---------- 2771 remaining sequences to the next cycle ---------- new table with 3726 representatives # comparing sequences from 230433 to 237147 ........................ ---------- 2469 remaining sequences to the next cycle ---------- new table with 3917 representatives # comparing sequences from 234678 to 241246 ........................ 100.0% ---------- 2578 remaining sequences to the next cycle ---------- new table with 3702 representatives # comparing sequences from 238668 to 245098 ..................... .......... 240000 finished 201490 clusters ... ---------- 2023 remaining sequences to the next cycle ---------- new table with 4099 representatives # comparing sequences from 243075 to 249353 ....................... ---------- 2195 remaining sequences to the next cycle ---------- new table with 3789 representatives # comparing sequences from 247158 to 253296 ...................... .......... 250000 finished 210763 clusters . ---------- 2186 remaining sequences to the next cycle ---------- new table with 3665 representatives # comparing sequences from 251110 to 257111 ....................... 100.0% ---------- 2259 remaining sequences to the next cycle ---------- new table with 3510 representatives # comparing sequences from 254852 to 260724 ..................... ---------- 2039 remaining sequences to the next cycle ---------- new table with 3555 representatives # comparing sequences from 258685 to 264425 .................... .......... 260000 finished 220099 clusters .. ---------- 1938 remaining sequences to the next cycle ---------- new table with 3564 representatives # comparing sequences from 262487 to 268096 ....................... ---------- 2007 remaining sequences to the next cycle ---------- new table with 3309 representatives # comparing sequences from 266089 to 271574 ........................ .......... 270000 finished 229391 clusters ---------- 1523 remaining sequences to the next cycle ---------- new table with 3699 representatives # comparing sequences from 270051 to 275399 ...................... 100.0% ---------- 1946 remaining sequences to the next cycle ---------- new table with 3164 representatives # comparing sequences from 273453 to 278684 ....................... 100.0% ---------- 1877 remaining sequences to the next cycle ---------- new table with 3168 representatives # comparing sequences from 276807 to 281922 ....................... .......... 280000 finished 238792 clusters ---------- 1880 remaining sequences to the next cycle ---------- new table with 3061 representatives # comparing sequences from 280042 to 285046 ...................... ---------- 1373 remaining sequences to the next cycle ---------- new table with 3425 representatives # comparing sequences from 283673 to 288552 ...................... ---------- 1440 remaining sequences to the next cycle ---------- new table with 3255 representatives # comparing sequences from 287112 to 291872 ...................... .......... 290000 finished 248242 clusters ---------- 1649 remaining sequences to the next cycle ---------- new table with 2938 representatives # comparing sequences from 290223 to 294876 ...................... ---------- 1470 remaining sequences to the next cycle ---------- new table with 3025 representatives # comparing sequences from 293406 to 297949 ..................... ---------- 1629 remaining sequences to the next cycle ---------- new table with 2778 representatives # comparing sequences from 296320 to 300762 ...................... ---------- 1446 remaining sequences to the next cycle ---------- new table with 2857 representatives # comparing sequences from 299316 to 303655 ..................... .......... 300000 finished 257771 clusters .. ---------- 1220 remaining sequences to the next cycle ---------- new table with 2967 representatives # comparing sequences from 302435 to 306667 ....................... 100.0% ---------- 1280 remaining sequences to the next cycle ---------- new table with 2853 representatives # comparing sequences from 305387 to 309517 ..................... ---------- 1518 remaining sequences to the next cycle ---------- new table with 2514 representatives # comparing sequences from 307999 to 312039 ....................... .......... 310000 finished 267374 clusters ---------- 1690 remaining sequences to the next cycle ---------- new table with 2256 representatives # comparing sequences from 310349 to 314308 ..................... ---------- 1282 remaining sequences to the next cycle ---------- new table with 2556 representatives # comparing sequences from 313026 to 316892 ...................... ---------- 1366 remaining sequences to the next cycle ---------- new table with 2420 representatives # comparing sequences from 315526 to 319306 ...................... ---------- 1250 remaining sequences to the next cycle ---------- new table with 2418 representatives # comparing sequences from 318056 to 321749 ...................... .......... 320000 finished 276971 clusters ---------- 1232 remaining sequences to the next cycle ---------- new table with 2348 representatives # comparing sequences from 320517 to 324125 ..................... 100.0% ---------- 1279 remaining sequences to the next cycle ---------- new table with 2255 representatives # comparing sequences from 322846 to 326374 .................... ---------- 1290 remaining sequences to the next cycle ---------- new table with 2143 representatives # comparing sequences from 325084 to 328535 ...................... ---------- 1117 remaining sequences to the next cycle ---------- new table with 2246 representatives # comparing sequences from 327418 to 330788 ...................... 100.0% ---------- 1224 remaining sequences to the next cycle ---------- new table with 2071 representatives # comparing sequences from 329564 to 332860 .................... .......... 330000 finished 286572 clusters . ---------- 1087 remaining sequences to the next cycle ---------- new table with 2134 representatives # comparing sequences from 331773 to 334993 ...................... 100.0% ---------- 1149 remaining sequences to the next cycle ---------- new table with 2007 representatives # comparing sequences from 333844 to 336993 ..................... 100.0% ---------- 1066 remaining sequences to the next cycle ---------- new table with 1990 representatives # comparing sequences from 335927 to 339004 ..................... ---------- 1160 remaining sequences to the next cycle ---------- new table with 1852 representatives # comparing sequences from 337844 to 340855 ...................... ---------- 1568 remaining sequences to the next cycle ---------- new table with 1408 representatives # comparing sequences from 339287 to 342248 ................... .......... 340000 finished 296245 clusters ---------- 1343 remaining sequences to the next cycle ---------- new table with 1562 representatives # comparing sequences from 340905 to 343810 ...................... ---------- 1345 remaining sequences to the next cycle ---------- new table with 1508 representatives # comparing sequences from 342465 to 345316 ..................... ---------- 1343 remaining sequences to the next cycle ---------- new table with 1458 representatives # comparing sequences from 343973 to 346772 ...................... ---------- 1482 remaining sequences to the next cycle ---------- new table with 1290 representatives # comparing sequences from 345290 to 348044 ..................... 100.0% ---------- 1639 remaining sequences to the next cycle ---------- new table with 1093 representatives # comparing sequences from 346405 to 349120 ..................... ---------- 1478 remaining sequences to the next cycle ---------- new table with 1192 representatives # comparing sequences from 347642 to 350315 ...................... ---------- 1211 remaining sequences to the next cycle ---------- new table with 1419 representatives # comparing sequences from 349104 to 351726 ................... .......... 350000 finished 305939 clusters ---------- 1235 remaining sequences to the next cycle ---------- new table with 1339 representatives # comparing sequences from 350491 to 353065 ..................... ---------- 1180 remaining sequences to the next cycle ---------- new table with 1365 representatives # comparing sequences from 351885 to 354411 ...................... 100.0% ---------- 1233 remaining sequences to the next cycle ---------- new table with 1262 representatives # comparing sequences from 353178 to 355660 .................... ---------- 1181 remaining sequences to the next cycle ---------- new table with 1266 representatives # comparing sequences from 354479 to 356916 ................... ---------- 1004 remaining sequences to the next cycle ---------- new table with 1395 representatives # comparing sequences from 355912 to 358300 ...................... ---------- 1044 remaining sequences to the next cycle ---------- new table with 1297 representatives # comparing sequences from 357256 to 359597 ................... ---------- 1240 remaining sequences to the next cycle ---------- new table with 1082 representatives # comparing sequences from 358357 to 360660 ..................... ---------- 1151 remaining sequences to the next cycle ---------- new table with 1116 representatives # comparing sequences from 359509 to 361773 ..................... .......... 360000 finished 315666 clusters ---------- 1186 remaining sequences to the next cycle ---------- new table with 1031 representatives # comparing sequences from 360587 to 362813 ..................... 100.0% ---------- 1045 remaining sequences to the next cycle ---------- new table with 1155 representatives # comparing sequences from 361768 to 363954 ..................... ---------- 926 remaining sequences to the next cycle ---------- new table with 1233 representatives # comparing sequences from 363028 to 365170 .................... ---------- 942 remaining sequences to the next cycle ---------- new table with 1164 representatives # comparing sequences from 364228 to 366329 ................... 100.0% ---------- 1328 remaining sequences to the next cycle ---------- new table with 752 representatives # comparing sequences from 365001 to 367075 .................. ---------- 1144 remaining sequences to the next cycle ---------- new table with 892 representatives # comparing sequences from 365931 to 367973 ..................... 100.0% ---------- 1117 remaining sequences to the next cycle ---------- new table with 903 representatives # comparing sequences from 366856 to 368866 ..................... ---------- 1398 remaining sequences to the next cycle ---------- new table with 594 representatives # comparing sequences from 367468 to 369457 ..................... ---------- 1037 remaining sequences to the next cycle ---------- new table with 934 representatives # comparing sequences from 368420 to 370376 .................... 100.0% ---------- 946 remaining sequences to the next cycle ---------- new table with 974 representatives # comparing sequences from 369430 to 371351 ..................... .......... 370000 finished 325380 clusters ---------- 828 remaining sequences to the next cycle ---------- new table with 1050 representatives # comparing sequences from 370523 to 372407 .................. ---------- 933 remaining sequences to the next cycle ---------- new table with 936 representatives # comparing sequences from 371474 to 373325 ..................... ---------- 821 remaining sequences to the next cycle ---------- new table with 982 representatives # comparing sequences from 372504 to 374319 ................... ---------- 814 remaining sequences to the next cycle ---------- new table with 979 representatives # comparing sequences from 373505 to 375286 .................... ---------- 733 remaining sequences to the next cycle ---------- new table with 1018 representatives # comparing sequences from 374553 to 376298 ..................... ---------- 878 remaining sequences to the next cycle ---------- new table with 844 representatives # comparing sequences from 375420 to 377135 ..................... ---------- 759 remaining sequences to the next cycle ---------- new table with 930 representatives # comparing sequences from 376376 to 378058 ..................... ---------- 844 remaining sequences to the next cycle ---------- new table with 810 representatives # comparing sequences from 377214 to 378867 ..................... 100.0% ---------- 749 remaining sequences to the next cycle ---------- new table with 889 representatives # comparing sequences from 378118 to 379740 .................. 100.0% ---------- 848 remaining sequences to the next cycle ---------- new table with 753 representatives # comparing sequences from 378892 to 380487 ..................... ---------- 730 remaining sequences to the next cycle ---------- new table with 840 representatives # comparing sequences from 379757 to 381322 ................... .......... 380000 finished 335094 clusters ---------- 737 remaining sequences to the next cycle ---------- new table with 802 representatives # comparing sequences from 380585 to 382122 .................... 100.0% ---------- 857 remaining sequences to the next cycle ---------- new table with 664 representatives # comparing sequences from 381265 to 382778 ................... 100.0% ---------- 780 remaining sequences to the next cycle ---------- new table with 726 representatives # comparing sequences from 381998 to 383486 .................... 100.0% ---------- 1094 remaining sequences to the next cycle ---------- new table with 378 representatives # comparing sequences from 382392 to 383866 .................... ---------- 841 remaining sequences to the next cycle ---------- new table with 609 representatives # comparing sequences from 383025 to 384478 .................... ---------- 904 remaining sequences to the next cycle ---------- new table with 544 representatives # comparing sequences from 383574 to 385008 .................... ---------- 781 remaining sequences to the next cycle ---------- new table with 629 representatives # comparing sequences from 384227 to 385638 ................... 100.0% ---------- 688 remaining sequences to the next cycle ---------- new table with 706 representatives # comparing sequences from 384950 to 386336 ..................... ---------- 706 remaining sequences to the next cycle ---------- new table with 675 representatives # comparing sequences from 385630 to 386993 ..................... ---------- 670 remaining sequences to the next cycle ---------- new table with 668 representatives # comparing sequences from 386323 to 387662 .................. ---------- 754 remaining sequences to the next cycle ---------- new table with 577 representatives # comparing sequences from 386908 to 388227 ..................... ---------- 806 remaining sequences to the next cycle ---------- new table with 506 representatives # comparing sequences from 387421 to 388722 ................... ---------- 764 remaining sequences to the next cycle ---------- new table with 511 representatives # comparing sequences from 387958 to 389241 ..................... 100.0% ---------- 769 remaining sequences to the next cycle ---------- new table with 502 representatives # comparing sequences from 388472 to 389737 .................... ---------- 693 remaining sequences to the next cycle ---------- new table with 565 representatives # comparing sequences from 389044 to 390289 ................... ---------- 622 remaining sequences to the next cycle ---------- new table with 592 representatives # comparing sequences from 389667 to 390891 .................... .......... 390000 finished 344829 clusters ---------- 623 remaining sequences to the next cycle ---------- new table with 581 representatives # comparing sequences from 390268 to 391471 ................... ---------- 603 remaining sequences to the next cycle ---------- new table with 597 representatives # comparing sequences from 390868 to 392050 ..................... ---------- 619 remaining sequences to the next cycle ---------- new table with 547 representatives # comparing sequences from 391431 to 392594 .................. ---------- 675 remaining sequences to the next cycle ---------- new table with 467 representatives # comparing sequences from 391919 to 393065 .................... ---------- 631 remaining sequences to the next cycle ---------- new table with 509 representatives # comparing sequences from 392434 to 393562 .................... ---------- 593 remaining sequences to the next cycle ---------- new table with 529 representatives # comparing sequences from 392969 to 394079 ..................... ---------- 646 remaining sequences to the next cycle ---------- new table with 446 representatives # comparing sequences from 393433 to 394527 .................... ---------- 560 remaining sequences to the next cycle ---------- new table with 520 representatives # comparing sequences from 393967 to 395042 .................... ---------- 580 remaining sequences to the next cycle ---------- new table with 492 representatives # comparing sequences from 394462 to 395520 .................... ---------- 647 remaining sequences to the next cycle ---------- new table with 400 representatives # comparing sequences from 394873 to 395917 ..................... ---------- 587 remaining sequences to the next cycle ---------- new table with 445 representatives # comparing sequences from 395330 to 396358 .................... ---------- 554 remaining sequences to the next cycle ---------- new table with 464 representatives # comparing sequences from 395804 to 396816 ................... ---------- 613 remaining sequences to the next cycle ---------- new table with 396 representatives # comparing sequences from 396203 to 397201 .................... 100.0% ---------- 567 remaining sequences to the next cycle ---------- new table with 426 representatives # comparing sequences from 396634 to 397617 ..................... 100.0% ---------- 587 remaining sequences to the next cycle ---------- new table with 378 representatives # comparing sequences from 397030 to 398000 .................... ---------- 500 remaining sequences to the next cycle ---------- new table with 449 representatives # comparing sequences from 397500 to 398453 .................... ---------- 524 remaining sequences to the next cycle ---------- new table with 423 representatives # comparing sequences from 397929 to 398868 .................... ---------- 521 remaining sequences to the next cycle ---------- new table with 416 representatives # comparing sequences from 398347 to 399271 ................... ---------- 504 remaining sequences to the next cycle ---------- new table with 397 representatives # comparing sequences from 398767 to 399677 ..................... 100.0% ---------- 462 remaining sequences to the next cycle ---------- new table with 430 representatives # comparing sequences from 399215 to 400109 .................... ---------- 539 remaining sequences to the next cycle ---------- new table with 345 representatives # comparing sequences from 399570 to 400452 ................... ---------- 568 remaining sequences to the next cycle ---------- new table with 313 representatives # comparing sequences from 399884 to 400755 ..................... .......... 400000 finished 354594 clusters 100.0% ---------- 567 remaining sequences to the next cycle ---------- new table with 303 representatives # comparing sequences from 400188 to 401049 ................... ---------- 559 remaining sequences to the next cycle ---------- new table with 298 representatives # comparing sequences from 400490 to 401340 .................... ---------- 528 remaining sequences to the next cycle ---------- new table with 310 representatives # comparing sequences from 400812 to 401651 ................... 100.0% ---------- 523 remaining sequences to the next cycle ---------- new table with 302 representatives # comparing sequences from 401128 to 401956 ................... ---------- 498 remaining sequences to the next cycle ---------- new table with 322 representatives # comparing sequences from 401458 to 402275 .................... ---------- 558 remaining sequences to the next cycle ---------- new table with 257 representatives # comparing sequences from 401717 to 402525 .................. ---------- 529 remaining sequences to the next cycle ---------- new table with 275 representatives # comparing sequences from 401996 to 402794 ..................... 100.0% ---------- 474 remaining sequences to the next cycle ---------- new table with 319 representatives # comparing sequences from 402320 to 403107 .................... ---------- 450 remaining sequences to the next cycle ---------- new table with 326 representatives # comparing sequences from 402657 to 403433 .................... ---------- 487 remaining sequences to the next cycle ---------- new table with 279 representatives # comparing sequences from 402946 to 403712 ..................... ---------- 488 remaining sequences to the next cycle ---------- new table with 272 representatives # comparing sequences from 403224 to 403980 .................... ---------- 426 remaining sequences to the next cycle ---------- new table with 326 representatives # comparing sequences from 403554 to 404299 ................... ---------- 476 remaining sequences to the next cycle ---------- new table with 267 representatives # comparing sequences from 403823 to 404558 ................... ---------- 492 remaining sequences to the next cycle ---------- new table with 240 representatives # comparing sequences from 404066 to 404793 .................. 100.0% ---------- 468 remaining sequences to the next cycle ---------- new table with 249 representatives # comparing sequences from 404325 to 405043 .................... ---------- 397 remaining sequences to the next cycle ---------- new table with 305 representatives # comparing sequences from 404646 to 405353 ................... 100.0% ---------- 398 remaining sequences to the next cycle ---------- new table with 301 representatives # comparing sequences from 404955 to 405651 ..................... ---------- 443 remaining sequences to the next cycle ---------- new table with 249 representatives # comparing sequences from 405208 to 405896 .................... ---------- 410 remaining sequences to the next cycle ---------- new table with 277 representatives # comparing sequences from 405486 to 406164 ................... ---------- 397 remaining sequences to the next cycle ---------- new table with 281 representatives # comparing sequences from 405767 to 406435 ................... ---------- 430 remaining sequences to the next cycle ---------- new table with 235 representatives # comparing sequences from 406005 to 406665 .................. ---------- 392 remaining sequences to the next cycle ---------- new table with 256 representatives # comparing sequences from 406273 to 406924 .................... ---------- 374 remaining sequences to the next cycle ---------- new table with 268 representatives # comparing sequences from 406550 to 407191 .................... ---------- 366 remaining sequences to the next cycle ---------- new table with 271 representatives # comparing sequences from 406825 to 407457 .................... ---------- 366 remaining sequences to the next cycle ---------- new table with 260 representatives # comparing sequences from 407091 to 407714 ................... ---------- 412 remaining sequences to the next cycle ---------- new table with 207 representatives # comparing sequences from 407302 to 407917 .................... ---------- 373 remaining sequences to the next cycle ---------- new table with 239 representatives # comparing sequences from 407544 to 408151 ................... 100.0% ---------- 364 remaining sequences to the next cycle ---------- new table with 243 representatives # comparing sequences from 407787 to 408386 ..................... ---------- 379 remaining sequences to the next cycle ---------- new table with 213 representatives # comparing sequences from 408007 to 408598 ................... ---------- 344 remaining sequences to the next cycle ---------- new table with 245 representatives # comparing sequences from 408254 to 408837 .................. ---------- 339 remaining sequences to the next cycle ---------- new table with 241 representatives # comparing sequences from 408498 to 409072 ................. ---------- 319 remaining sequences to the next cycle ---------- new table with 245 representatives # comparing sequences from 408753 to 409318 ................... ---------- 356 remaining sequences to the next cycle ---------- new table with 204 representatives # comparing sequences from 408962 to 409520 ..................... ---------- 330 remaining sequences to the next cycle ---------- new table with 228 representatives # comparing sequences from 409190 to 409740 .................... ---------- 308 remaining sequences to the next cycle ---------- new table with 242 representatives # comparing sequences from 409432 to 409974 ................... 100.0% ---------- 395 remaining sequences to the next cycle ---------- new table with 146 representatives # comparing sequences from 409579 to 410116 .................... ---------- 361 remaining sequences to the next cycle ---------- new table with 174 representatives # comparing sequences from 409755 to 410286 ................. ---------- 373 remaining sequences to the next cycle ---------- new table with 152 representatives # comparing sequences from 409913 to 410438 ................. ---------- 310 remaining sequences to the next cycle ---------- new table with 204 representatives # comparing sequences from 410128 to 410646 ................... ---------- 313 remaining sequences to the next cycle ---------- new table with 198 representatives # comparing sequences from 410333 to 410844 .................. ---------- 326 remaining sequences to the next cycle ---------- new table with 179 representatives # comparing sequences from 410518 to 411023 ................... 100.0% ---------- 340 remaining sequences to the next cycle ---------- new table with 163 representatives # comparing sequences from 410683 to 411182 ................... ---------- 317 remaining sequences to the next cycle ---------- new table with 175 representatives # comparing sequences from 410865 to 411358 ..................... ---------- 298 remaining sequences to the next cycle ---------- new table with 194 representatives # comparing sequences from 411060 to 411546 ................... ---------- 319 remaining sequences to the next cycle ---------- new table with 165 representatives # comparing sequences from 411227 to 411707 ................... ---------- 288 remaining sequences to the next cycle ---------- new table with 189 representatives # comparing sequences from 411419 to 411893 .................... 100.0% ---------- 293 remaining sequences to the next cycle ---------- new table with 180 representatives # comparing sequences from 411600 to 412067 ................... ---------- 267 remaining sequences to the next cycle ---------- new table with 189 representatives # comparing sequences from 411800 to 412260 .................. ---------- 264 remaining sequences to the next cycle ---------- new table with 189 representatives # comparing sequences from 411996 to 412450 ..................... ---------- 253 remaining sequences to the next cycle ---------- new table with 192 representatives # comparing sequences from 412197 to 412644 .................... ---------- 277 remaining sequences to the next cycle ---------- new table with 161 representatives # comparing sequences from 412367 to 412808 ................... 100.0% ---------- 284 remaining sequences to the next cycle ---------- new table with 148 representatives # comparing sequences from 412524 to 412959 .................. ---------- 280 remaining sequences to the next cycle ---------- new table with 150 representatives # comparing sequences from 412679 to 413109 ................... 100.0% ---------- 258 remaining sequences to the next cycle ---------- new table with 170 representatives # comparing sequences from 412851 to 413275 ..................... ---------- 261 remaining sequences to the next cycle ---------- new table with 163 representatives # comparing sequences from 413014 to 413433 .................... 100.0% ---------- 249 remaining sequences to the next cycle ---------- new table with 168 representatives # comparing sequences from 413184 to 413597 .................... ---------- 272 remaining sequences to the next cycle ---------- new table with 140 representatives # comparing sequences from 413325 to 413733 .................. 100.0% ---------- 278 remaining sequences to the next cycle ---------- new table with 130 representatives # comparing sequences from 413455 to 413858 .................. ---------- 265 remaining sequences to the next cycle ---------- new table with 134 representatives # comparing sequences from 413593 to 413992 ................... ---------- 233 remaining sequences to the next cycle ---------- new table with 163 representatives # comparing sequences from 413759 to 414152 .................... ---------- 229 remaining sequences to the next cycle ---------- new table with 159 representatives # comparing sequences from 413923 to 414310 ................... ---------- 249 remaining sequences to the next cycle ---------- new table with 132 representatives # comparing sequences from 414061 to 414443 ................... 100.0% ---------- 232 remaining sequences to the next cycle ---------- new table with 149 representatives # comparing sequences from 414211 to 414588 .................... ---------- 244 remaining sequences to the next cycle ---------- new table with 127 representatives # comparing sequences from 414344 to 414717 .................... ---------- 220 remaining sequences to the next cycle ---------- new table with 150 representatives # comparing sequences from 414497 to 414864 ................... ---------- 243 remaining sequences to the next cycle ---------- new table with 124 representatives # comparing sequences from 414621 to 414984 ................... ---------- 224 remaining sequences to the next cycle ---------- new table with 138 representatives # comparing sequences from 414760 to 415118 .................... ---------- 213 remaining sequences to the next cycle ---------- new table with 144 representatives # comparing sequences from 414905 to 415258 .................... ---------- 232 remaining sequences to the next cycle ---------- new table with 120 representatives # comparing sequences from 415026 to 415375 .................... ---------- 209 remaining sequences to the next cycle ---------- new table with 139 representatives # comparing sequences from 415166 to 415510 ................... ---------- 244 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 415266 to 415607 ................... ---------- 237 remaining sequences to the next cycle ---------- new table with 103 representatives # comparing sequences from 415370 to 415707 ................... ---------- 215 remaining sequences to the next cycle ---------- new table with 117 representatives # comparing sequences from 415492 to 415825 .................... ---------- 200 remaining sequences to the next cycle ---------- new table with 132 representatives # comparing sequences from 415625 to 415953 ................... ---------- 203 remaining sequences to the next cycle ---------- new table with 120 representatives # comparing sequences from 415750 to 416074 .................. ---------- 189 remaining sequences to the next cycle ---------- new table with 131 representatives # comparing sequences from 415885 to 416205 ................... ---------- 205 remaining sequences to the next cycle ---------- new table with 109 representatives # comparing sequences from 416000 to 416316 .................... ---------- 186 remaining sequences to the next cycle ---------- new table with 127 representatives # comparing sequences from 416130 to 416441 ................... ---------- 199 remaining sequences to the next cycle ---------- new table with 107 representatives # comparing sequences from 416242 to 416549 ................... ---------- 181 remaining sequences to the next cycle ---------- new table with 125 representatives # comparing sequences from 416368 to 416671 ................... ---------- 185 remaining sequences to the next cycle ---------- new table with 114 representatives # comparing sequences from 416486 to 416785 ................... ---------- 178 remaining sequences to the next cycle ---------- new table with 118 representatives # comparing sequences from 416607 to 416902 ................... ---------- 194 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 416708 to 416999 ................... 100.0% ---------- 176 remaining sequences to the next cycle ---------- new table with 114 representatives # comparing sequences from 416823 to 417110 ................... ---------- 186 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 416924 to 417208 .................... ---------- 171 remaining sequences to the next cycle ---------- new table with 111 representatives # comparing sequences from 417037 to 417317 ................... ---------- 179 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 417138 to 417414 .................... ---------- 176 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 417238 to 417511 ................... ---------- 170 remaining sequences to the next cycle ---------- new table with 103 representatives # comparing sequences from 417341 to 417610 .................. 100.0% ---------- 156 remaining sequences to the next cycle ---------- new table with 110 representatives # comparing sequences from 417454 to 417719 .................. ---------- 153 remaining sequences to the next cycle ---------- new table with 108 representatives # comparing sequences from 417566 to 417828 .................. ---------- 159 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 417669 to 417927 .................. ---------- 153 remaining sequences to the next cycle ---------- new table with 101 representatives # comparing sequences from 417774 to 418028 .................. ---------- 151 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 417877 to 418128 ................... ---------- 150 remaining sequences to the next cycle ---------- new table with 101 representatives # comparing sequences from 417978 to 418225 .................... ---------- 140 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 418085 to 418329 ................... ---------- 140 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 418189 to 418429 ................. ---------- 135 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 418294 to 418530 .................... ---------- 131 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 418399 to 418632 ................... ---------- 133 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 418499 to 418728 ................... ---------- 128 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 418600 to 418826 ................... ---------- 125 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 418701 to 418923 ................... ---------- 121 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 418802 to 419021 ................... ---------- 116 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 418905 to 419120 .................... ---------- 115 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 419005 to 419217 ................... ---------- 109 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 419108 to 419316 ................... ---------- 108 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 419208 to 419413 ................... ---------- 105 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 419308 to 419509 ................... ---------- 99 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 419410 to 419608 .................. ---------- 94 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 419514 to 419708 .................. ---------- 90 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 419618 to 419809 ................... ---------- 88 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 419721 to 419908 .................. ---------- 84 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 419824 to 420008 .................. ---------- 80 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 419928 to 420108 .................. .......... 420000 finished 374152 clusters ---------- 77 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 420031 to 420208 .................. ---------- 74 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 420134 to 420307 .................. ---------- 71 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 420236 to 420405 .................. ---------- 62 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 420343 to 420509 ................... ---------- 66 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 420443 to 420605 .................. ---------- 62 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 420543 to 420702 .................... ---------- 59 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 420643 to 420798 .................. ---------- 54 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 420744 to 420896 ................... ---------- 52 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 420844 to 420993 ................... ---------- 45 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 420948 to 421093 ................... ---------- 45 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 421048 to 421189 .................. ---------- 41 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 421148 to 421286 .................... ---------- 38 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 421248 to 421383 .................. ---------- 29 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 421354 to 421485 .................. ---------- 27 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 421458 to 421585 ................. ---------- 24 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 421561 to 421685 .................. ---------- 22 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 421663 to 421783 ................. ---------- 15 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 421768 to 421885 .................. ---------- 13 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 421872 to 421985 ................... ---------- 9 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 421976 to 422085 ................... ---------- 5 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 422080 to 422186 ................. ---------- 1 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 422185 to 422287 ................. ---------- 1 remaining sequences to the next cycle ---------- new table with 100 representatives # comparing sequences from 422286 to 422385 ...................---------- new table with 98 representatives # comparing sequences from 422385 to 422480 ...................---------- new table with 94 representatives # comparing sequences from 422480 to 422572 ..................---------- new table with 91 representatives # comparing sequences from 422572 to 422661 ..................---------- new table with 89 representatives # comparing sequences from 422661 to 422747 .................---------- new table with 86 representatives # comparing sequences from 422747 to 422830 ................---------- new table with 82 representatives # comparing sequences from 422830 to 422910 ................---------- new table with 80 representatives # comparing sequences from 422910 to 422987 ..................---------- new table with 75 representatives # comparing sequences from 422987 to 423062 ....................---------- new table with 75 representatives # comparing sequences from 423062 to 423134 ..................---------- new table with 71 representatives # comparing sequences from 423134 to 423204 .................---------- new table with 69 representatives # comparing sequences from 423204 to 423271 .................---------- new table with 67 representatives # comparing sequences from 423271 to 423336 ...............---------- new table with 62 representatives # comparing sequences from 423336 to 423399 ................---------- new table with 63 representatives # comparing sequences from 423399 to 423459 ...............---------- new table with 60 representatives # comparing sequences from 423459 to 423517 ....................---------- new table with 57 representatives # comparing sequences from 423517 to 423573 ..................---------- new table with 54 representatives # comparing sequences from 423573 to 423627 ..................---------- new table with 53 representatives # comparing sequences from 423627 to 423680 .................---------- new table with 52 representatives # comparing sequences from 423680 to 423731 .................---------- new table with 50 representatives # comparing sequences from 423731 to 423780 ................---------- new table with 46 representatives # comparing sequences from 423780 to 423827 ................---------- new table with 47 representatives # comparing sequences from 423827 to 423873 ...............---------- new table with 45 representatives # comparing sequences from 423873 to 423917 ..............---------- new table with 43 representatives # comparing sequences from 423917 to 423960 ..............---------- new table with 42 representatives # comparing sequences from 423960 to 424001 ...............---------- new table with 41 representatives # comparing sequences from 424001 to 424041 ............---------- new table with 38 representatives # comparing sequences from 424041 to 424079 ...................---------- new table with 36 representatives # comparing sequences from 424079 to 424116 ..................---------- new table with 35 representatives # comparing sequences from 424116 to 424152 ..................---------- new table with 36 representatives # comparing sequences from 424152 to 424186 ................---------- new table with 33 representatives # comparing sequences from 424186 to 425165 ....................---------- new table with 958 representatives 425165 finished 379210 clusters Approximated maximum memory consumption: 1016M writing new database writing clustering information program completed ! Total CPU time 3868.05