# /gscratch/srlab/programs/stringtie-1.3.6.Linux_x86_64/stringtie Geoduck-juvenile-OA-exposure-RNA-EPI-116-2.sorted.bam -p 28 -o Geoduck-juvenile-OA-exposure-RNA-EPI-116-2.gtf -G /gscratch/srlab/sam/data/P_generosa/genomes/Pgenerosa_v074_genome_snap02.all.renamed.putative_function.domain_added.gff -C Geoduck-juvenile-OA-exposure-RNA-EPI-116-2.cov_refs.gtf # StringTie version 1.3.6 PGA_scaffold2__36_contigs__length_69596280 StringTie transcript 1392058 1392346 1000 . . gene_id "STRG.1"; transcript_id "STRG.1.1"; cov "3.093426"; FPKM "29035.075698"; TPM "63104.324864"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 1392058 1392346 1000 . . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; cov "3.093426"; PGA_scaffold2__36_contigs__length_69596280 StringTie transcript 34076939 34077197 1000 . . gene_id "STRG.2"; transcript_id "STRG.2.1"; cov "2.899614"; FPKM "27215.945034"; TPM "59150.658149"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 34076939 34077197 1000 . . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "1"; cov "2.899614"; PGA_scaffold2__36_contigs__length_69596280 StringTie transcript 23195723 23196168 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; cov "2.809524"; FPKM "26370.355074"; TPM "57312.867743"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 23195723 23195837 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "1"; cov "2.747826"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 23196074 23196168 1000 + . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "2"; cov "2.884211"; PGA_scaffold2__36_contigs__length_69596280 StringTie transcript 44819224 44819522 1000 . . gene_id "STRG.4"; transcript_id "STRG.4.1"; cov "4.013378"; FPKM "37669.798480"; TPM "81870.880090"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 44819224 44819522 1000 . . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "1"; cov "4.013378"; PGA_scaffold3__111_contigs__length_57743597 StringTie transcript 43644703 43644903 1000 . . gene_id "STRG.5"; transcript_id "STRG.5.1"; cov "4.373134"; FPKM "41046.489144"; TPM "89209.720423"; PGA_scaffold3__111_contigs__length_57743597 StringTie exon 43644703 43644903 1000 . . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "1"; cov "4.373134"; PGA_scaffold4__129_contigs__length_65288255 StringTie transcript 58456809 58457138 1000 . . gene_id "STRG.6"; transcript_id "STRG.6.1"; cov "3.627273"; FPKM "34045.794576"; TPM "73994.533492"; PGA_scaffold4__129_contigs__length_65288255 StringTie exon 58456809 58457138 1000 . . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "1"; cov "3.627273"; PGA_scaffold5__109_contigs__length_67248332 StringTie transcript 18352615 18352866 1000 . . gene_id "STRG.7"; transcript_id "STRG.7.1"; cov "3.595238"; FPKM "33745.112209"; TPM "73341.035705"; PGA_scaffold5__109_contigs__length_67248332 StringTie exon 18352615 18352866 1000 . . gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "1"; cov "3.595238"; PGA_scaffold6__104_contigs__length_61759565 StringTie transcript 22658976 22659193 1000 . . gene_id "STRG.8"; transcript_id "STRG.8.1"; cov "2.866972"; FPKM "26909.565331"; TPM "58484.777869"; PGA_scaffold6__104_contigs__length_61759565 StringTie exon 22658976 22659193 1000 . . gene_id "STRG.8"; transcript_id "STRG.8.1"; exon_number "1"; cov "2.866972"; PGA_scaffold9__45_contigs__length_38581958 StringTie transcript 27831450 27831663 1000 . . gene_id "STRG.9"; transcript_id "STRG.9.1"; cov "2.813084"; FPKM "26403.769440"; TPM "57385.489941"; PGA_scaffold9__45_contigs__length_38581958 StringTie exon 27831450 27831663 1000 . . gene_id "STRG.9"; transcript_id "STRG.9.1"; exon_number "1"; cov "2.813084"; PGA_scaffold10__49_contigs__length_53961475 StringTie transcript 37153238 37153487 1000 . . gene_id "STRG.10"; transcript_id "STRG.10.1"; cov "4.172000"; FPKM "39158.633764"; TPM "85106.688614"; PGA_scaffold10__49_contigs__length_53961475 StringTie exon 37153238 37153487 1000 . . gene_id "STRG.10"; transcript_id "STRG.10.1"; exon_number "1"; cov "4.172000"; PGA_scaffold11__79_contigs__length_51449921 StringTie transcript 27133406 27133615 1000 . . gene_id "STRG.11"; transcript_id "STRG.11.1"; cov "4.300000"; FPKM "40360.049181"; TPM "87717.823835"; PGA_scaffold11__79_contigs__length_51449921 StringTie exon 27133406 27133615 1000 . . gene_id "STRG.11"; transcript_id "STRG.11.1"; exon_number "1"; cov "4.300000"; PGA_scaffold10__49_contigs__length_53961475 StringTie transcript 41640863 41649310 1000 - . gene_id "STRG.12"; transcript_id "STRG.12.1"; cov "2.723982"; FPKM "25567.452905"; TPM "55567.854234"; PGA_scaffold10__49_contigs__length_53961475 StringTie exon 41640863 41641023 1000 - . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "1"; cov "2.993789"; PGA_scaffold10__49_contigs__length_53961475 StringTie exon 41649251 41649310 1000 - . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "2"; cov "2.000000"; PGA_scaffold14__91_contigs__length_45393038 StringTie transcript 30461449 30461650 1000 . . gene_id "STRG.13"; transcript_id "STRG.13.1"; cov "3.737624"; FPKM "35081.555456"; TPM "76245.638045"; PGA_scaffold14__91_contigs__length_45393038 StringTie exon 30461449 30461650 1000 . . gene_id "STRG.13"; transcript_id "STRG.13.1"; exon_number "1"; cov "3.737624"; PGA_scaffold17__51_contigs__length_34923512 StringTie transcript 19739964 19740189 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.1"; cov "3.995575"; FPKM "37502.698490"; TPM "81507.707900"; PGA_scaffold17__51_contigs__length_34923512 StringTie exon 19739964 19740189 1000 + . gene_id "STRG.14"; transcript_id "STRG.14.1"; exon_number "1"; cov "3.995575";