# /gscratch/srlab/programs/stringtie-1.3.6.Linux_x86_64/stringtie Geoduck-juvenile-OA-exposure-RNA-EPI-116-1.sorted.bam -p 28 -o Geoduck-juvenile-OA-exposure-RNA-EPI-116-1.gtf -G /gscratch/srlab/sam/data/P_generosa/genomes/Pgenerosa_v074_genome_snap02.all.renamed.putative_function.domain_added.gff -C Geoduck-juvenile-OA-exposure-RNA-EPI-116-1.cov_refs.gtf # StringTie version 1.3.6 PGA_scaffold1__77_contigs__length_89643857 StringTie transcript 36955681 36955914 1000 . . gene_id "STRG.1"; transcript_id "STRG.1.1"; cov "6.452991"; FPKM "12529.349748"; TPM "9555.117570"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 36955681 36955914 1000 . . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; cov "6.452991"; PGA_scaffold1__77_contigs__length_89643857 StringTie transcript 22942999 22948309 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.1"; cov "5.931035"; FPKM "11515.901988"; TPM "8782.243263"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 22942999 22943118 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "1"; cov "6.233333"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 22948227 22948309 1000 - . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "2"; cov "5.493976"; PGA_scaffold1__77_contigs__length_89643857 StringTie transcript 25791530 25792288 1000 - . gene_id "STRG.3"; transcript_id "STRG.3.1"; cov "6.684685"; FPKM "12979.214805"; TPM "9898.193116"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 25791530 25791670 1000 - . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "1"; cov "7.397163"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 25792208 25792288 1000 - . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "2"; cov "5.444445"; PGA_scaffold1__77_contigs__length_89643857 StringTie transcript 58002926 58003158 1000 . . gene_id "STRG.4"; transcript_id "STRG.4.1"; cov "3.849785"; FPKM "7474.875251"; TPM "5700.480335"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 58002926 58003158 1000 . . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "1"; cov "3.849785"; PGA_scaffold1__77_contigs__length_89643857 StringTie transcript 48476632 48480847 1000 - . gene_id "STRG.5"; transcript_id "STRG.5.1"; cov "7.032710"; FPKM "13654.952141"; TPM "10413.523107"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 48476632 48476649 1000 - . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "1"; cov "5.000000"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 48478733 48478827 1000 - . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "2"; cov "7.631579"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 48480747 48480847 1000 - . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "3"; cov "6.831683"; PGA_scaffold1__77_contigs__length_89643857 StringTie transcript 80898689 80898889 1000 . . gene_id "STRG.6"; transcript_id "STRG.6.1"; cov "2.995025"; FPKM "5815.243773"; TPM "4434.814182"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 80898689 80898889 1000 . . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "1"; cov "2.995025"; PGA_scaffold1__77_contigs__length_89643857 StringTie transcript 69467156 69468854 1000 + . gene_id "STRG.7"; transcript_id "STRG.7.1"; cov "4.151724"; FPKM "8061.130421"; TPM "6147.569544"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 69467156 69467244 1000 + . gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "1"; cov "4.000000"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 69468420 69468534 1000 + . gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "2"; cov "4.382609"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 69468769 69468854 1000 + . gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "3"; cov "4.000000"; PGA_scaffold1__77_contigs__length_89643857 StringTie transcript 87947506 87947710 1000 . . gene_id "STRG.8"; transcript_id "STRG.8.1"; cov "4.419512"; FPKM "8581.076832"; TPM "6544.090448"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 87947506 87947710 1000 . . gene_id "STRG.8"; transcript_id "STRG.8.1"; exon_number "1"; cov "4.419512"; PGA_scaffold1__77_contigs__length_89643857 StringTie transcript 85128826 85134410 1000 - . gene_id "STRG.9"; transcript_id "STRG.9.1"; cov "5.136752"; FPKM "9973.694738"; TPM "7606.127033"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 85128826 85128890 1000 - . gene_id "STRG.9"; transcript_id "STRG.9.1"; exon_number "1"; cov "3.969231"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 85130448 85130577 1000 - . gene_id "STRG.9"; transcript_id "STRG.9.1"; exon_number "2"; cov "6.061539"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 85134372 85134410 1000 - . gene_id "STRG.9"; transcript_id "STRG.9.1"; exon_number "3"; cov "4.000000"; PGA_scaffold2__36_contigs__length_69596280 StringTie transcript 4214641 4214891 1000 . . gene_id "STRG.10"; transcript_id "STRG.10.1"; cov "7.163347"; FPKM "13908.601443"; TPM "10606.960831"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 4214641 4214891 1000 . . gene_id "STRG.10"; transcript_id "STRG.10.1"; exon_number "1"; cov "7.163347"; PGA_scaffold2__36_contigs__length_69596280 StringTie transcript 9501560 9501765 1000 . . gene_id "STRG.11"; transcript_id "STRG.11.1"; cov "4.398058"; FPKM "8539.421006"; TPM "6512.322932"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 9501560 9501765 1000 . . gene_id "STRG.11"; transcript_id "STRG.11.1"; exon_number "1"; cov "4.398058"; PGA_scaffold2__36_contigs__length_69596280 StringTie transcript 5464084 5475401 1000 - . gene_id "STRG.12"; transcript_id "STRG.12.1"; cov "2.584527"; FPKM "5018.206707"; TPM "3826.978737"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 5464084 5464138 1000 - . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "1"; cov "2.981818"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 5465837 5465906 1000 - . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "2"; cov "3.000000"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 5472709 5472832 1000 - . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "3"; cov "1.838710"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 5475302 5475401 1000 - . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "4"; cov "3.000000"; PGA_scaffold2__36_contigs__length_69596280 StringTie transcript 15493135 15493355 1000 . . gene_id "STRG.13"; transcript_id "STRG.13.1"; cov "2.714932"; FPKM "5271.405550"; TPM "4020.072933"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 15493135 15493355 1000 . . gene_id "STRG.13"; transcript_id "STRG.13.1"; exon_number "1"; cov "2.714932"; PGA_scaffold2__36_contigs__length_69596280 StringTie transcript 20208925 20209164 1000 . . gene_id "STRG.14"; transcript_id "STRG.14.1"; cov "5.033333"; FPKM "9772.892842"; TPM "7452.991734"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 20208925 20209164 1000 . . gene_id "STRG.14"; transcript_id "STRG.14.1"; exon_number "1"; cov "5.033333"; PGA_scaffold2__36_contigs__length_69596280 StringTie transcript 23201865 23202144 1000 . . gene_id "STRG.15"; transcript_id "STRG.15.1"; cov "6.985714"; FPKM "13563.703087"; TPM "10343.934864"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 23201865 23202144 1000 . . gene_id "STRG.15"; transcript_id "STRG.15.1"; exon_number "1"; cov "6.985714"; PGA_scaffold2__36_contigs__length_69596280 StringTie transcript 28070860 28072891 1000 - . gene_id "STRG.16"; transcript_id "STRG.16.1"; cov "4.346570"; FPKM "8439.450130"; TPM "6436.083264"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 28070860 28071096 1000 - . gene_id "STRG.16"; transcript_id "STRG.16.1"; exon_number "1"; cov "4.405063"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 28072852 28072891 1000 - . gene_id "STRG.16"; transcript_id "STRG.16.1"; exon_number "2"; cov "4.000000"; PGA_scaffold2__36_contigs__length_69596280 StringTie transcript 34076671 34077199 1000 . . gene_id "STRG.17"; transcript_id "STRG.17.1"; cov "4.672968"; FPKM "9073.195737"; TPM "6919.389573"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 34076671 34077199 1000 . . gene_id "STRG.17"; transcript_id "STRG.17.1"; exon_number "1"; cov "4.672968"; PGA_scaffold2__36_contigs__length_69596280 StringTie transcript 32838136 32841119 1000 - . gene_id "STRG.18"; transcript_id "STRG.18.1"; cov "5.641129"; FPKM "10953.010506"; TPM "8352.971641"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 32838136 32838173 1000 - . gene_id "STRG.18"; transcript_id "STRG.18.1"; exon_number "1"; cov "5.000000"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 32839339 32839418 1000 - . gene_id "STRG.18"; transcript_id "STRG.18.1"; exon_number "2"; cov "6.000000"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 32840990 32841119 1000 - . gene_id "STRG.18"; transcript_id "STRG.18.1"; exon_number "3"; cov "5.607692"; PGA_scaffold2__36_contigs__length_69596280 StringTie transcript 54582018 54582275 1000 . . gene_id "STRG.19"; transcript_id "STRG.19.1"; cov "4.620155"; FPKM "8970.652196"; TPM "6841.187942"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 54582018 54582275 1000 . . gene_id "STRG.19"; transcript_id "STRG.19.1"; exon_number "1"; cov "4.620155"; PGA_scaffold2__36_contigs__length_69596280 StringTie transcript 43189445 43189680 1000 . . gene_id "STRG.20"; transcript_id "STRG.20.1"; cov "2.550848"; FPKM "4952.814400"; TPM "3777.109335"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 43189445 43189680 1000 . . gene_id "STRG.20"; transcript_id "STRG.20.1"; exon_number "1"; cov "2.550848"; PGA_scaffold2__36_contigs__length_69596280 StringTie transcript 54885497 54885718 1000 . . gene_id "STRG.21"; transcript_id "STRG.21.1"; cov "2.711712"; FPKM "5265.153487"; TPM "4015.304992"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 54885497 54885718 1000 . . gene_id "STRG.21"; transcript_id "STRG.21.1"; exon_number "1"; cov "2.711712"; PGA_scaffold2__36_contigs__length_69596280 StringTie transcript 54023053 54023344 1000 . . gene_id "STRG.22"; transcript_id "STRG.22.1"; cov "4.109589"; FPKM "7979.319652"; TPM "6085.179115"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 54023053 54023344 1000 . . gene_id "STRG.22"; transcript_id "STRG.22.1"; exon_number "1"; cov "4.109589"; PGA_scaffold2__36_contigs__length_69596280 StringTie transcript 61142704 61142941 1000 . . gene_id "STRG.23"; transcript_id "STRG.23.1"; cov "2.529412"; FPKM "4911.193523"; TPM "3745.368472"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 61142704 61142941 1000 . . gene_id "STRG.23"; transcript_id "STRG.23.1"; exon_number "1"; cov "2.529412"; PGA_scaffold3__111_contigs__length_57743597 StringTie transcript 4641280 4641523 1000 . . gene_id "STRG.24"; transcript_id "STRG.24.1"; cov "5.528688"; FPKM "10734.691184"; TPM "8186.477224"; PGA_scaffold3__111_contigs__length_57743597 StringTie exon 4641280 4641523 1000 . . gene_id "STRG.24"; transcript_id "STRG.24.1"; exon_number "1"; cov "5.528688"; PGA_scaffold3__111_contigs__length_57743597 StringTie transcript 7129969 7130827 1000 - . gene_id "STRG.25"; transcript_id "STRG.25.1"; cov "5.342222"; FPKM "10372.642372"; TPM "7910.371996"; PGA_scaffold3__111_contigs__length_57743597 StringTie exon 7129969 7130071 1000 - . gene_id "STRG.25"; transcript_id "STRG.25.1"; exon_number "1"; cov "5.067961"; PGA_scaffold3__111_contigs__length_57743597 StringTie exon 7130706 7130827 1000 - . gene_id "STRG.25"; transcript_id "STRG.25.1"; exon_number "2"; cov "5.573771"; PGA_scaffold3__111_contigs__length_57743597 StringTie transcript 10057852 10058200 1000 . . gene_id "STRG.26"; transcript_id "STRG.26.1"; cov "4.739255"; FPKM "9201.900861"; TPM "7017.542519"; PGA_scaffold3__111_contigs__length_57743597 StringTie exon 10057852 10058200 1000 . . gene_id "STRG.26"; transcript_id "STRG.26.1"; exon_number "1"; cov "4.739255"; PGA_scaffold3__111_contigs__length_57743597 StringTie transcript 14330452 14331771 1000 - . gene_id "STRG.27"; transcript_id "STRG.27.1"; cov "2.809302"; FPKM "5454.637595"; TPM "4159.809133"; PGA_scaffold3__111_contigs__length_57743597 StringTie exon 14330452 14330486 1000 - . gene_id "STRG.27"; transcript_id "STRG.27.1"; exon_number "1"; cov "2.000000"; PGA_scaffold3__111_contigs__length_57743597 StringTie exon 14331592 14331771 1000 - . gene_id "STRG.27"; transcript_id "STRG.27.1"; exon_number "2"; cov "2.966667"; PGA_scaffold3__111_contigs__length_57743597 StringTie transcript 18340902 18341113 1000 . . gene_id "STRG.28"; transcript_id "STRG.28.1"; cov "7.028302"; FPKM "13646.393416"; TPM "10406.996062"; PGA_scaffold3__111_contigs__length_57743597 StringTie exon 18340902 18341113 1000 . . gene_id "STRG.28"; transcript_id "STRG.28.1"; exon_number "1"; cov "7.028302"; PGA_scaffold3__111_contigs__length_57743597 StringTie transcript 33745098 33747715 1000 + . gene_id "STRG.29"; transcript_id "STRG.29.1"; cov "8.035556"; FPKM "15602.112500"; TPM "11898.464188"; PGA_scaffold3__111_contigs__length_57743597 StringTie exon 33745098 33745202 1000 + . gene_id "STRG.29"; transcript_id "STRG.29.1"; exon_number "1"; cov "7.752381"; PGA_scaffold3__111_contigs__length_57743597 StringTie exon 33747596 33747715 1000 + . gene_id "STRG.29"; transcript_id "STRG.29.1"; exon_number "2"; cov "8.283334"; PGA_scaffold3__111_contigs__length_57743597 StringTie transcript 36650181 36652625 1000 + . gene_id "STRG.30"; transcript_id "STRG.30.1"; cov "6.372807"; FPKM "12373.661730"; TPM "9436.386962"; PGA_scaffold3__111_contigs__length_57743597 StringTie exon 36650181 36650252 1000 + . gene_id "STRG.30"; transcript_id "STRG.30.1"; exon_number "1"; cov "3.868421"; PGA_scaffold3__111_contigs__length_57743597 StringTie exon 36651263 36651353 1000 + . gene_id "STRG.30"; transcript_id "STRG.30.1"; exon_number "2"; cov "8.571428"; PGA_scaffold3__111_contigs__length_57743597 StringTie exon 36652573 36652625 1000 + . gene_id "STRG.30"; transcript_id "STRG.30.1"; exon_number "3"; cov "6.000000"; PGA_scaffold3__111_contigs__length_57743597 StringTie transcript 56835704 56835906 1000 . . gene_id "STRG.31"; transcript_id "STRG.31.1"; cov "13.389163"; FPKM "25996.860381"; TPM "19825.694260"; PGA_scaffold3__111_contigs__length_57743597 StringTie exon 56835704 56835906 1000 . . gene_id "STRG.31"; transcript_id "STRG.31.1"; exon_number "1"; cov "13.389163"; PGA_scaffold4__129_contigs__length_65288255 StringTie transcript 1224821 1225104 1000 . . gene_id "STRG.32"; transcript_id "STRG.32.1"; cov "6.380282"; FPKM "12388.175448"; TPM "9447.455396"; PGA_scaffold4__129_contigs__length_65288255 StringTie exon 1224821 1225104 1000 . . gene_id "STRG.32"; transcript_id "STRG.32.1"; exon_number "1"; cov "6.380282"; PGA_scaffold4__129_contigs__length_65288255 StringTie transcript 6456379 6456659 1000 . . gene_id "STRG.33"; transcript_id "STRG.33.1"; cov "9.526690"; FPKM "18497.349671"; TPM "14106.426462"; PGA_scaffold4__129_contigs__length_65288255 StringTie exon 6456379 6456659 1000 . . gene_id "STRG.33"; transcript_id "STRG.33.1"; exon_number "1"; cov "9.526690"; PGA_scaffold4__129_contigs__length_65288255 StringTie transcript 13094855 13095076 1000 . . gene_id "STRG.34"; transcript_id "STRG.34.1"; cov "6.729730"; FPKM "13066.675729"; TPM "9964.892461"; PGA_scaffold4__129_contigs__length_65288255 StringTie exon 13094855 13095076 1000 . . gene_id "STRG.34"; transcript_id "STRG.34.1"; exon_number "1"; cov "6.729730"; PGA_scaffold4__129_contigs__length_65288255 StringTie transcript 42362568 42364707 1000 + . gene_id "STRG.35"; transcript_id "STRG.35.1"; cov "11.540756"; FPKM "22407.929638"; TPM "17088.708233"; PGA_scaffold4__129_contigs__length_65288255 StringTie exon 42362568 42362606 1000 + . gene_id "STRG.35"; transcript_id "STRG.35.1"; exon_number "1"; cov "9.000000"; PGA_scaffold4__129_contigs__length_65288255 StringTie exon 42364123 42364226 1000 + . gene_id "STRG.35"; transcript_id "STRG.35.1"; exon_number "2"; cov "13.846154"; PGA_scaffold4__129_contigs__length_65288255 StringTie exon 42364613 42364707 1000 + . gene_id "STRG.35"; transcript_id "STRG.35.1"; exon_number "3"; cov "10.060000"; PGA_scaffold4__129_contigs__length_65288255 StringTie transcript 43953151 43955931 1000 + . gene_id "STRG.36"; transcript_id "STRG.36.1"; cov "3.655052"; FPKM "7096.774946"; TPM "5412.133937"; PGA_scaffold4__129_contigs__length_65288255 StringTie exon 43953151 43953240 1000 + . gene_id "STRG.36"; transcript_id "STRG.36.1"; exon_number "1"; cov "3.000000"; PGA_scaffold4__129_contigs__length_65288255 StringTie exon 43954279 43954392 1000 + . gene_id "STRG.36"; transcript_id "STRG.36.1"; exon_number "2"; cov "3.956140"; PGA_scaffold4__129_contigs__length_65288255 StringTie exon 43955849 43955931 1000 + . gene_id "STRG.36"; transcript_id "STRG.36.1"; exon_number "3"; cov "3.951807"; PGA_scaffold4__129_contigs__length_65288255 StringTie transcript 53261737 53261947 1000 . . gene_id "STRG.37"; transcript_id "STRG.37.1"; cov "9.881516"; FPKM "19186.292063"; TPM "14631.826877"; PGA_scaffold4__129_contigs__length_65288255 StringTie exon 53261737 53261947 1000 . . gene_id "STRG.37"; transcript_id "STRG.37.1"; exon_number "1"; cov "9.881516"; PGA_scaffold4__129_contigs__length_65288255 StringTie transcript 65217744 65217970 1000 . . gene_id "STRG.38"; transcript_id "STRG.38.1"; cov "3.938326"; FPKM "7646.789508"; TPM "5831.585378"; PGA_scaffold4__129_contigs__length_65288255 StringTie exon 65217744 65217970 1000 . . gene_id "STRG.38"; transcript_id "STRG.38.1"; exon_number "1"; cov "3.938326"; PGA_scaffold5__109_contigs__length_67248332 StringTie transcript 16850136 16850733 1000 + . gene_id "STRG.39"; transcript_id "STRG.39.1"; cov "3.604563"; FPKM "6998.743763"; TPM "5337.373515"; PGA_scaffold5__109_contigs__length_67248332 StringTie exon 16850136 16850238 1000 + . gene_id "STRG.39"; transcript_id "STRG.39.1"; exon_number "1"; cov "1.834951"; PGA_scaffold5__109_contigs__length_67248332 StringTie exon 16850574 16850733 1000 + . gene_id "STRG.39"; transcript_id "STRG.39.1"; exon_number "2"; cov "4.743750"; PGA_scaffold5__109_contigs__length_67248332 StringTie transcript 19717042 19717262 1000 . . gene_id "STRG.40"; transcript_id "STRG.40.1"; cov "8.194571"; FPKM "15910.861505"; TPM "12133.921982"; PGA_scaffold5__109_contigs__length_67248332 StringTie exon 19717042 19717262 1000 . . gene_id "STRG.40"; transcript_id "STRG.40.1"; exon_number "1"; cov "8.194571"; PGA_scaffold5__109_contigs__length_67248332 StringTie transcript 20036076 20036335 1000 . . gene_id "STRG.41"; transcript_id "STRG.41.1"; cov "6.969231"; FPKM "13531.699126"; TPM "10319.528042"; PGA_scaffold5__109_contigs__length_67248332 StringTie exon 20036076 20036335 1000 . . gene_id "STRG.41"; transcript_id "STRG.41.1"; exon_number "1"; cov "6.969231"; PGA_scaffold5__109_contigs__length_67248332 StringTie transcript 33222586 33228493 1000 + . gene_id "STRG.42"; transcript_id "STRG.42.1"; cov "6.724696"; FPKM "13056.901541"; TPM "9957.438481"; PGA_scaffold5__109_contigs__length_67248332 StringTie exon 33222586 33222703 1000 + . gene_id "STRG.42"; transcript_id "STRG.42.1"; exon_number "1"; cov "6.932203"; PGA_scaffold5__109_contigs__length_67248332 StringTie exon 33224085 33224173 1000 + . gene_id "STRG.42"; transcript_id "STRG.42.1"; exon_number "2"; cov "7.224719"; PGA_scaffold5__109_contigs__length_67248332 StringTie exon 33228454 33228493 1000 + . gene_id "STRG.42"; transcript_id "STRG.42.1"; exon_number "3"; cov "5.000000"; PGA_scaffold5__109_contigs__length_67248332 StringTie transcript 46884471 46884685 1000 . . gene_id "STRG.43"; transcript_id "STRG.43.1"; cov "11.237209"; FPKM "21818.552320"; TPM "16639.238015"; PGA_scaffold5__109_contigs__length_67248332 StringTie exon 46884471 46884685 1000 . . gene_id "STRG.43"; transcript_id "STRG.43.1"; exon_number "1"; cov "11.237209"; PGA_scaffold5__109_contigs__length_67248332 StringTie transcript 50039669 50039893 1000 . . gene_id "STRG.44"; transcript_id "STRG.44.1"; cov "2.680000"; FPKM "5203.580375"; TPM "3968.348180"; PGA_scaffold5__109_contigs__length_67248332 StringTie exon 50039669 50039893 1000 . . gene_id "STRG.44"; transcript_id "STRG.44.1"; exon_number "1"; cov "2.680000"; PGA_scaffold6__104_contigs__length_61759565 StringTie transcript 7689225 7689432 1000 . . gene_id "STRG.45"; transcript_id "STRG.45.1"; cov "12.336538"; FPKM "23953.047398"; TPM "18267.044073"; PGA_scaffold6__104_contigs__length_61759565 StringTie exon 7689225 7689432 1000 . . gene_id "STRG.45"; transcript_id "STRG.45.1"; exon_number "1"; cov "12.336538"; PGA_scaffold6__104_contigs__length_61759565 StringTie transcript 22659973 22660283 1000 . . gene_id "STRG.46"; transcript_id "STRG.46.1"; cov "2.890675"; FPKM "5612.634216"; TPM "4280.300326"; PGA_scaffold6__104_contigs__length_61759565 StringTie exon 22659973 22660283 1000 . . gene_id "STRG.46"; transcript_id "STRG.46.1"; exon_number "1"; cov "2.890675"; PGA_scaffold6__104_contigs__length_61759565 StringTie transcript 24839279 24839490 1000 . . gene_id "STRG.47"; transcript_id "STRG.47.1"; cov "7.122642"; FPKM "13829.567212"; TPM "10546.687841"; PGA_scaffold6__104_contigs__length_61759565 StringTie exon 24839279 24839490 1000 . . gene_id "STRG.47"; transcript_id "STRG.47.1"; exon_number "1"; cov "7.122642"; PGA_scaffold6__104_contigs__length_61759565 StringTie transcript 33351990 33352213 1000 . . gene_id "STRG.48"; transcript_id "STRG.48.1"; cov "2.687500"; FPKM "5218.142633"; TPM "3979.453632"; PGA_scaffold6__104_contigs__length_61759565 StringTie exon 33351990 33352213 1000 . . gene_id "STRG.48"; transcript_id "STRG.48.1"; exon_number "1"; cov "2.687500"; PGA_scaffold6__104_contigs__length_61759565 StringTie transcript 57192200 57192429 1000 . . gene_id "STRG.49"; transcript_id "STRG.49.1"; cov "2.626087"; FPKM "5098.901036"; TPM "3888.517748"; PGA_scaffold6__104_contigs__length_61759565 StringTie exon 57192200 57192429 1000 . . gene_id "STRG.49"; transcript_id "STRG.49.1"; exon_number "1"; cov "2.626087"; PGA_scaffold7__69_contigs__length_43120122 StringTie transcript 259707 263849 1000 + . gene_id "STRG.50"; transcript_id "STRG.50.1"; cov "6.262879"; FPKM "12160.221736"; TPM "9273.613611"; PGA_scaffold7__69_contigs__length_43120122 StringTie exon 259707 259816 1000 + . gene_id "STRG.50"; transcript_id "STRG.50.1"; exon_number "1"; cov "2.027273"; PGA_scaffold7__69_contigs__length_43120122 StringTie exon 263696 263849 1000 + . gene_id "STRG.50"; transcript_id "STRG.50.1"; exon_number "2"; cov "9.288312"; PGA_scaffold7__69_contigs__length_43120122 StringTie transcript 10910154 10912509 1000 + . gene_id "STRG.51"; transcript_id "STRG.51.1"; cov "2.884615"; FPKM "5600.867911"; TPM "4271.327121"; PGA_scaffold7__69_contigs__length_43120122 StringTie exon 10910154 10910285 1000 + . gene_id "STRG.51"; transcript_id "STRG.51.1"; exon_number "1"; cov "3.121212"; PGA_scaffold7__69_contigs__length_43120122 StringTie exon 10912434 10912509 1000 + . gene_id "STRG.51"; transcript_id "STRG.51.1"; exon_number "2"; cov "2.473684"; PGA_scaffold7__69_contigs__length_43120122 StringTie transcript 11352408 11356490 1000 + . gene_id "STRG.52"; transcript_id "STRG.52.1"; cov "2.913183"; FPKM "5656.336525"; TPM "4313.628528"; PGA_scaffold7__69_contigs__length_43120122 StringTie exon 11352408 11352460 1000 + . gene_id "STRG.52"; transcript_id "STRG.52.1"; exon_number "1"; cov "3.000000"; PGA_scaffold7__69_contigs__length_43120122 StringTie exon 11356233 11356490 1000 + . gene_id "STRG.52"; transcript_id "STRG.52.1"; exon_number "2"; cov "2.895349"; PGA_scaffold7__69_contigs__length_43120122 StringTie transcript 25659956 25660159 1000 . . gene_id "STRG.53"; transcript_id "STRG.53.1"; cov "14.794118"; FPKM "28724.769435"; TPM "21906.048968"; PGA_scaffold7__69_contigs__length_43120122 StringTie exon 25659956 25660159 1000 . . gene_id "STRG.53"; transcript_id "STRG.53.1"; exon_number "1"; cov "14.794118"; PGA_scaffold8__63_contigs__length_61151155 StringTie transcript 12840974 12841190 1000 . . gene_id "STRG.54"; transcript_id "STRG.54.1"; cov "4.152074"; FPKM "8061.809993"; TPM "6148.087798"; PGA_scaffold8__63_contigs__length_61151155 StringTie exon 12840974 12841190 1000 . . gene_id "STRG.54"; transcript_id "STRG.54.1"; exon_number "1"; cov "4.152074"; PGA_scaffold8__63_contigs__length_61151155 StringTie transcript 14312811 14315210 1000 + . gene_id "STRG.55"; transcript_id "STRG.55.1"; cov "3.442748"; FPKM "6684.558182"; TPM "5097.769686"; PGA_scaffold8__63_contigs__length_61151155 StringTie exon 14312811 14312888 1000 + . gene_id "STRG.55"; transcript_id "STRG.55.1"; exon_number "1"; cov "2.000000"; PGA_scaffold8__63_contigs__length_61151155 StringTie exon 14315027 14315210 1000 + . gene_id "STRG.55"; transcript_id "STRG.55.1"; exon_number "2"; cov "4.054348"; PGA_scaffold8__63_contigs__length_61151155 StringTie transcript 24894265 24894535 1000 + . gene_id "STRG.56"; transcript_id "STRG.56.1"; cov "4.319283"; FPKM "8386.468751"; TPM "6395.678668"; PGA_scaffold8__63_contigs__length_61151155 StringTie exon 24894265 24894465 1000 + . gene_id "STRG.56"; transcript_id "STRG.56.1"; exon_number "1"; cov "4.441791"; PGA_scaffold8__63_contigs__length_61151155 StringTie exon 24894514 24894535 1000 + . gene_id "STRG.56"; transcript_id "STRG.56.1"; exon_number "2"; cov "3.200000"; PGA_scaffold8__63_contigs__length_61151155 StringTie transcript 50586395 50586867 1000 - . gene_id "STRG.57"; transcript_id "STRG.57.1"; cov "5.529954"; FPKM "10737.149294"; TPM "8188.351824"; PGA_scaffold8__63_contigs__length_61151155 StringTie exon 50586395 50586455 1000 - . gene_id "STRG.57"; transcript_id "STRG.57.1"; exon_number "1"; cov "4.000000"; PGA_scaffold8__63_contigs__length_61151155 StringTie exon 50586712 50586867 1000 - . gene_id "STRG.57"; transcript_id "STRG.57.1"; exon_number "2"; cov "6.128205"; PGA_scaffold8__63_contigs__length_61151155 StringTie transcript 51281175 51281471 1000 . . gene_id "STRG.58"; transcript_id "STRG.58.1"; cov "6.053872"; FPKM "11754.406541"; TPM "8964.131317"; PGA_scaffold8__63_contigs__length_61151155 StringTie exon 51281175 51281471 1000 . . gene_id "STRG.58"; transcript_id "STRG.58.1"; exon_number "1"; cov "6.053872"; PGA_scaffold8__63_contigs__length_61151155 StringTie transcript 55809693 55811039 1000 + . gene_id "STRG.59"; transcript_id "STRG.59.1"; cov "7.244444"; FPKM "14066.062173"; TPM "10727.043343"; PGA_scaffold8__63_contigs__length_61151155 StringTie exon 55809693 55809773 1000 + . gene_id "STRG.59"; transcript_id "STRG.59.1"; exon_number "1"; cov "6.000000"; PGA_scaffold8__63_contigs__length_61151155 StringTie exon 55810403 55810561 1000 + . gene_id "STRG.59"; transcript_id "STRG.59.1"; exon_number "2"; cov "7.930818"; PGA_scaffold8__63_contigs__length_61151155 StringTie exon 55811010 55811039 1000 + . gene_id "STRG.59"; transcript_id "STRG.59.1"; exon_number "3"; cov "6.966667"; PGA_scaffold9__45_contigs__length_38581958 StringTie transcript 3736926 3737163 1000 . . gene_id "STRG.60"; transcript_id "STRG.60.1"; cov "3.802521"; FPKM "7383.105839"; TPM "5630.495257"; PGA_scaffold9__45_contigs__length_38581958 StringTie exon 3736926 3737163 1000 . . gene_id "STRG.60"; transcript_id "STRG.60.1"; exon_number "1"; cov "3.802521"; PGA_scaffold9__45_contigs__length_38581958 StringTie transcript 12955379 12955650 1000 . . gene_id "STRG.61"; transcript_id "STRG.61.1"; cov "3.875000"; FPKM "7523.833564"; TPM "5737.816864"; PGA_scaffold9__45_contigs__length_38581958 StringTie exon 12955379 12955650 1000 . . gene_id "STRG.61"; transcript_id "STRG.61.1"; exon_number "1"; cov "3.875000"; PGA_scaffold9__45_contigs__length_38581958 StringTie transcript 29529386 29529617 1000 . . gene_id "STRG.62"; transcript_id "STRG.62.1"; cov "3.905172"; FPKM "7582.416559"; TPM "5782.493357"; PGA_scaffold9__45_contigs__length_38581958 StringTie exon 29529386 29529617 1000 . . gene_id "STRG.62"; transcript_id "STRG.62.1"; exon_number "1"; cov "3.905172"; PGA_scaffold9__45_contigs__length_38581958 StringTie transcript 33462035 33462323 1000 . . gene_id "STRG.63"; transcript_id "STRG.63.1"; cov "4.152249"; FPKM "8062.149779"; TPM "6148.346926"; PGA_scaffold9__45_contigs__length_38581958 StringTie exon 33462035 33462323 1000 . . gene_id "STRG.63"; transcript_id "STRG.63.1"; exon_number "1"; cov "4.152249"; PGA_scaffold9__45_contigs__length_38581958 StringTie transcript 36260611 36260897 1000 . . gene_id "STRG.64"; transcript_id "STRG.64.1"; cov "2.623693"; FPKM "5094.252763"; TPM "3884.972888"; PGA_scaffold9__45_contigs__length_38581958 StringTie exon 36260611 36260897 1000 . . gene_id "STRG.64"; transcript_id "STRG.64.1"; exon_number "1"; cov "2.623693"; PGA_scaffold10__49_contigs__length_53961475 StringTie transcript 11440361 11440576 1000 . . gene_id "STRG.65"; transcript_id "STRG.65.1"; cov "4.819445"; FPKM "9357.600529"; TPM "7136.282012"; PGA_scaffold10__49_contigs__length_53961475 StringTie exon 11440361 11440576 1000 . . gene_id "STRG.65"; transcript_id "STRG.65.1"; exon_number "1"; cov "4.819445"; PGA_scaffold10__49_contigs__length_53961475 StringTie transcript 10943588 10946492 1000 + . gene_id "STRG.66"; transcript_id "STRG.66.1"; cov "9.361502"; FPKM "18176.614957"; TPM "13861.828142"; PGA_scaffold10__49_contigs__length_53961475 StringTie exon 10943588 10943650 1000 + . gene_id "STRG.66"; transcript_id "STRG.66.1"; exon_number "1"; cov "7.095238"; PGA_scaffold10__49_contigs__length_53961475 StringTie exon 10946343 10946492 1000 + . gene_id "STRG.66"; transcript_id "STRG.66.1"; exon_number "2"; cov "10.313333"; PGA_scaffold10__49_contigs__length_53961475 StringTie transcript 22615123 22615323 1000 . . gene_id "STRG.67"; transcript_id "STRG.67.1"; cov "2.945274"; FPKM "5718.645517"; TPM "4361.146536"; PGA_scaffold10__49_contigs__length_53961475 StringTie exon 22615123 22615323 1000 . . gene_id "STRG.67"; transcript_id "STRG.67.1"; exon_number "1"; cov "2.945274"; PGA_scaffold10__49_contigs__length_53961475 StringTie transcript 25492270 25494985 1000 + . gene_id "STRG.68"; transcript_id "STRG.68.1"; cov "4.650527"; FPKM "9029.623518"; TPM "6886.160580"; PGA_scaffold10__49_contigs__length_53961475 StringTie exon 25492270 25492324 1000 + . gene_id "STRG.68"; transcript_id "STRG.68.1"; exon_number "1"; cov "1.000000"; PGA_scaffold10__49_contigs__length_53961475 StringTie exon 25493927 25494052 1000 + . gene_id "STRG.68"; transcript_id "STRG.68.1"; exon_number "2"; cov "3.769841"; PGA_scaffold10__49_contigs__length_53961475 StringTie exon 25494692 25494985 1000 + . gene_id "STRG.68"; transcript_id "STRG.68.1"; exon_number "3"; cov "5.710885"; PGA_scaffold10__49_contigs__length_53961475 StringTie transcript 38740505 38740767 1000 . . gene_id "STRG.69"; transcript_id "STRG.69.1"; cov "2.756654"; FPKM "5352.414423"; TPM "4081.851822"; PGA_scaffold10__49_contigs__length_53961475 StringTie exon 38740505 38740767 1000 . . gene_id "STRG.69"; transcript_id "STRG.69.1"; exon_number "1"; cov "2.756654"; PGA_scaffold11__79_contigs__length_51449921 StringTie transcript 5274068 5274374 1000 . . gene_id "STRG.70"; transcript_id "STRG.70.1"; cov "9.804561"; FPKM "19036.873583"; TPM "14517.877536"; PGA_scaffold11__79_contigs__length_51449921 StringTie exon 5274068 5274374 1000 . . gene_id "STRG.70"; transcript_id "STRG.70.1"; exon_number "1"; cov "9.804561"; PGA_scaffold11__79_contigs__length_51449921 StringTie transcript 8548866 8549138 1000 . . gene_id "STRG.71"; transcript_id "STRG.71.1"; cov "7.150183"; FPKM "13883.041766"; TPM "10587.468542"; PGA_scaffold11__79_contigs__length_51449921 StringTie exon 8548866 8549138 1000 . . gene_id "STRG.71"; transcript_id "STRG.71.1"; exon_number "1"; cov "7.150183"; PGA_scaffold11__79_contigs__length_51449921 StringTie transcript 28427709 28427956 1000 . . gene_id "STRG.72"; transcript_id "STRG.72.1"; cov "13.286290"; FPKM "25797.118618"; TPM "19673.367438"; PGA_scaffold11__79_contigs__length_51449921 StringTie exon 28427709 28427956 1000 . . gene_id "STRG.72"; transcript_id "STRG.72.1"; exon_number "1"; cov "13.286290"; PGA_scaffold11__79_contigs__length_51449921 StringTie transcript 37663033 37663273 1000 . . gene_id "STRG.73"; transcript_id "STRG.73.1"; cov "6.236515"; FPKM "12109.032485"; TPM "9234.575727"; PGA_scaffold11__79_contigs__length_51449921 StringTie exon 37663033 37663273 1000 . . gene_id "STRG.73"; transcript_id "STRG.73.1"; exon_number "1"; cov "6.236515"; PGA_scaffold11__79_contigs__length_51449921 StringTie transcript 47552041 47552256 1000 . . gene_id "STRG.74"; transcript_id "STRG.74.1"; cov "8.361111"; FPKM "16234.221310"; TPM "12380.522245"; PGA_scaffold11__79_contigs__length_51449921 StringTie exon 47552041 47552256 1000 . . gene_id "STRG.74"; transcript_id "STRG.74.1"; exon_number "1"; cov "8.361111"; PGA_scaffold11__79_contigs__length_51449921 StringTie transcript 50806390 50806591 1000 . . gene_id "STRG.75"; transcript_id "STRG.75.1"; cov "8.198020"; FPKM "15917.558203"; TPM "12139.029009"; PGA_scaffold11__79_contigs__length_51449921 StringTie exon 50806390 50806591 1000 . . gene_id "STRG.75"; transcript_id "STRG.75.1"; exon_number "1"; cov "8.198020"; PGA_scaffold12__71_contigs__length_50438331 StringTie transcript 28628252 28628520 1000 . . gene_id "STRG.76"; transcript_id "STRG.76.1"; cov "11.208179"; FPKM "21762.186672"; TPM "16596.252512"; PGA_scaffold12__71_contigs__length_50438331 StringTie exon 28628252 28628520 1000 . . gene_id "STRG.76"; transcript_id "STRG.76.1"; exon_number "1"; cov "11.208179"; PGA_scaffold12__71_contigs__length_50438331 StringTie transcript 28629037 28629267 1000 . . gene_id "STRG.77"; transcript_id "STRG.77.1"; cov "2.614719"; FPKM "5076.828535"; TPM "3871.684845"; PGA_scaffold12__71_contigs__length_50438331 StringTie exon 28629037 28629267 1000 . . gene_id "STRG.77"; transcript_id "STRG.77.1"; exon_number "1"; cov "2.614719"; PGA_scaffold12__71_contigs__length_50438331 StringTie transcript 28452404 28453934 1000 + . gene_id "STRG.78"; transcript_id "STRG.78.1"; cov "2.733032"; FPKM "5306.549134"; TPM "4046.874090"; PGA_scaffold12__71_contigs__length_50438331 StringTie exon 28452404 28452436 1000 + . gene_id "STRG.78"; transcript_id "STRG.78.1"; exon_number "1"; cov "2.000000"; PGA_scaffold12__71_contigs__length_50438331 StringTie exon 28453342 28453464 1000 + . gene_id "STRG.78"; transcript_id "STRG.78.1"; exon_number "2"; cov "3.317073"; PGA_scaffold12__71_contigs__length_50438331 StringTie exon 28453870 28453934 1000 + . gene_id "STRG.78"; transcript_id "STRG.78.1"; exon_number "3"; cov "2.000000"; PGA_scaffold12__71_contigs__length_50438331 StringTie transcript 34149792 34150123 1000 . . gene_id "STRG.79"; transcript_id "STRG.79.1"; cov "6.364458"; FPKM "12357.451024"; TPM "9424.024373"; PGA_scaffold12__71_contigs__length_50438331 StringTie exon 34149792 34150123 1000 . . gene_id "STRG.79"; transcript_id "STRG.79.1"; exon_number "1"; cov "6.364458"; PGA_scaffold12__71_contigs__length_50438331 StringTie transcript 34867168 34867391 1000 . . gene_id "STRG.80"; transcript_id "STRG.80.1"; cov "5.375000"; FPKM "10436.285266"; TPM "7958.907263"; PGA_scaffold12__71_contigs__length_50438331 StringTie exon 34867168 34867391 1000 . . gene_id "STRG.80"; transcript_id "STRG.80.1"; exon_number "1"; cov "5.375000"; PGA_scaffold12__71_contigs__length_50438331 StringTie transcript 50094093 50094352 1000 . . gene_id "STRG.81"; transcript_id "STRG.81.1"; cov "8.011539"; FPKM "15555.480265"; TPM "11862.901570"; PGA_scaffold12__71_contigs__length_50438331 StringTie exon 50094093 50094352 1000 . . gene_id "STRG.81"; transcript_id "STRG.81.1"; exon_number "1"; cov "8.011539"; PGA_scaffold13__52_contigs__length_44396874 StringTie transcript 1722322 1722578 1000 . . gene_id "STRG.82"; transcript_id "STRG.82.1"; cov "6.910506"; FPKM "13417.676642"; TPM "10232.572353"; PGA_scaffold13__52_contigs__length_44396874 StringTie exon 1722322 1722578 1000 . . gene_id "STRG.82"; transcript_id "STRG.82.1"; exon_number "1"; cov "6.910506"; PGA_scaffold13__52_contigs__length_44396874 StringTie transcript 25328162 25328371 1000 . . gene_id "STRG.83"; transcript_id "STRG.83.1"; cov "12.895238"; FPKM "25037.838576"; TPM "19094.326210"; PGA_scaffold13__52_contigs__length_44396874 StringTie exon 25328162 25328371 1000 . . gene_id "STRG.83"; transcript_id "STRG.83.1"; exon_number "1"; cov "12.895238"; PGA_scaffold13__52_contigs__length_44396874 StringTie transcript 25655924 25656156 1000 . . gene_id "STRG.84"; transcript_id "STRG.84.1"; cov "10.274678"; FPKM "19949.668954"; TPM "15213.992439"; PGA_scaffold13__52_contigs__length_44396874 StringTie exon 25655924 25656156 1000 . . gene_id "STRG.84"; transcript_id "STRG.84.1"; exon_number "1"; cov "10.274678"; PGA_scaffold13__52_contigs__length_44396874 StringTie transcript 32233230 32233462 1000 . . gene_id "STRG.85"; transcript_id "STRG.85.1"; cov "9.034335"; FPKM "17541.376233"; TPM "13377.383153"; PGA_scaffold13__52_contigs__length_44396874 StringTie exon 32233230 32233462 1000 . . gene_id "STRG.85"; transcript_id "STRG.85.1"; exon_number "1"; cov "9.034335"; PGA_scaffold13__52_contigs__length_44396874 StringTie transcript 19939769 19949093 1000 + . gene_id "STRG.86"; transcript_id "STRG.86.1"; cov "5.950000"; FPKM "11552.725086"; TPM "8810.325249"; PGA_scaffold13__52_contigs__length_44396874 StringTie exon 19939769 19939786 1000 + . gene_id "STRG.86"; transcript_id "STRG.86.1"; exon_number "1"; cov "4.000000"; PGA_scaffold13__52_contigs__length_44396874 StringTie exon 19940964 19941019 1000 + . gene_id "STRG.86"; transcript_id "STRG.86.1"; exon_number "2"; cov "5.714286"; PGA_scaffold13__52_contigs__length_44396874 StringTie exon 19945806 19945881 1000 + . gene_id "STRG.86"; transcript_id "STRG.86.1"; exon_number "3"; cov "7.894737"; PGA_scaffold13__52_contigs__length_44396874 StringTie exon 19949044 19949093 1000 + . gene_id "STRG.86"; transcript_id "STRG.86.1"; exon_number "4"; cov "3.960000"; PGA_scaffold14__91_contigs__length_45393038 StringTie transcript 8029206 8029484 1000 . . gene_id "STRG.87"; transcript_id "STRG.87.1"; cov "5.924731"; FPKM "11503.661924"; TPM "8772.908761"; PGA_scaffold14__91_contigs__length_45393038 StringTie exon 8029206 8029484 1000 . . gene_id "STRG.87"; transcript_id "STRG.87.1"; exon_number "1"; cov "5.924731"; PGA_scaffold14__91_contigs__length_45393038 StringTie transcript 18704251 18704476 1000 . . gene_id "STRG.88"; transcript_id "STRG.88.1"; cov "2.654867"; FPKM "5154.781276"; TPM "3931.133070"; PGA_scaffold14__91_contigs__length_45393038 StringTie exon 18704251 18704476 1000 . . gene_id "STRG.88"; transcript_id "STRG.88.1"; exon_number "1"; cov "2.654867"; PGA_scaffold14__91_contigs__length_45393038 StringTie transcript 20541807 20542020 1000 . . gene_id "STRG.89"; transcript_id "STRG.89.1"; cov "4.219626"; FPKM "8192.971284"; TPM "6248.113864"; PGA_scaffold14__91_contigs__length_45393038 StringTie exon 20541807 20542020 1000 . . gene_id "STRG.89"; transcript_id "STRG.89.1"; exon_number "1"; cov "4.219626"; PGA_scaffold14__91_contigs__length_45393038 StringTie transcript 30442626 30442897 1000 . . gene_id "STRG.90"; transcript_id "STRG.90.1"; cov "6.653186"; FPKM "12918.055261"; TPM "9851.551698"; PGA_scaffold14__91_contigs__length_45393038 StringTie exon 30442626 30442897 1000 . . gene_id "STRG.90"; transcript_id "STRG.90.1"; exon_number "1"; cov "6.653186"; PGA_scaffold14__91_contigs__length_45393038 StringTie transcript 30462034 30462397 1000 . . gene_id "STRG.91"; transcript_id "STRG.91.1"; cov "4.676740"; FPKM "9080.519583"; TPM "6924.974875"; PGA_scaffold14__91_contigs__length_45393038 StringTie exon 30462034 30462397 1000 . . gene_id "STRG.91"; transcript_id "STRG.91.1"; exon_number "1"; cov "4.676740"; PGA_scaffold15__101_contigs__length_47938513 StringTie transcript 3331853 3332110 1000 . . gene_id "STRG.92"; transcript_id "STRG.92.1"; cov "4.697674"; FPKM "9121.165759"; TPM "6955.972413"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 3331853 3332110 1000 . . gene_id "STRG.92"; transcript_id "STRG.92.1"; exon_number "1"; cov "4.697674"; PGA_scaffold15__101_contigs__length_47938513 StringTie transcript 3923613 3923904 1000 . . gene_id "STRG.93"; transcript_id "STRG.93.1"; cov "4.136986"; FPKM "8032.514612"; TPM "6125.746590"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 3923613 3923904 1000 . . gene_id "STRG.93"; transcript_id "STRG.93.1"; exon_number "1"; cov "4.136986"; PGA_scaffold13__52_contigs__length_44396874 StringTie transcript 40768279 40865251 1000 - . gene_id "STRG.94"; transcript_id "STRG.94.1"; cov "2.567452"; FPKM "4985.053299"; TPM "3801.695325"; PGA_scaffold13__52_contigs__length_44396874 StringTie exon 40768279 40768309 1000 - . gene_id "STRG.94"; transcript_id "STRG.94.1"; exon_number "1"; cov "1.000000"; PGA_scaffold13__52_contigs__length_44396874 StringTie exon 40864816 40865251 1000 - . gene_id "STRG.94"; transcript_id "STRG.94.1"; exon_number "2"; cov "2.678899"; PGA_scaffold15__101_contigs__length_47938513 StringTie transcript 21255268 21255486 1000 . . gene_id "STRG.95"; transcript_id "STRG.95.1"; cov "4.095891"; FPKM "7952.723143"; TPM "6064.896117"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 21255268 21255486 1000 . . gene_id "STRG.95"; transcript_id "STRG.95.1"; exon_number "1"; cov "4.095891"; PGA_scaffold15__101_contigs__length_47938513 StringTie transcript 22937050 22942253 1000 - . gene_id "STRG.96"; transcript_id "STRG.96.1"; cov "2.679710"; FPKM "5203.017301"; TPM "3967.918769"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 22937050 22937153 1000 - . gene_id "STRG.96"; transcript_id "STRG.96.1"; exon_number "1"; cov "2.362500"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 22939253 22939291 1000 - . gene_id "STRG.96"; transcript_id "STRG.96.1"; exon_number "2"; cov "3.000000"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 22942190 22942253 1000 - . gene_id "STRG.96"; transcript_id "STRG.96.1"; exon_number "3"; cov "3.000000"; PGA_scaffold15__101_contigs__length_47938513 StringTie transcript 29245906 29246113 1000 . . gene_id "STRG.97"; transcript_id "STRG.97.1"; cov "5.807693"; FPKM "11276.416909"; TPM "8599.607442"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 29245906 29246113 1000 . . gene_id "STRG.97"; transcript_id "STRG.97.1"; exon_number "1"; cov "5.807693"; PGA_scaffold15__101_contigs__length_47938513 StringTie transcript 39265798 39267697 1000 - . gene_id "STRG.98"; transcript_id "STRG.98.1"; cov "6.466667"; FPKM "12555.903541"; TPM "9575.367992"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 39265798 39265956 1000 - . gene_id "STRG.98"; transcript_id "STRG.98.1"; exon_number "1"; cov "7.075472"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 39267632 39267697 1000 - . gene_id "STRG.98"; transcript_id "STRG.98.1"; exon_number "2"; cov "5.000000"; PGA_scaffold15__101_contigs__length_47938513 StringTie transcript 45230224 45230555 1000 . . gene_id "STRG.99"; transcript_id "STRG.99.1"; cov "3.015060"; FPKM "5854.144420"; TPM "4464.480546"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 45230224 45230555 1000 . . gene_id "STRG.99"; transcript_id "STRG.99.1"; exon_number "1"; cov "3.015060"; PGA_scaffold15__101_contigs__length_47938513 StringTie transcript 35101479 35120429 1000 - . gene_id "STRG.100"; transcript_id "STRG.100.1"; cov "8.219925"; FPKM "15960.089706"; TPM "12171.464332"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 35101479 35101514 1000 - . gene_id "STRG.100"; transcript_id "STRG.100.1"; exon_number "1"; cov "10.000000"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 35108977 35109086 1000 - . gene_id "STRG.100"; transcript_id "STRG.100.1"; exon_number "2"; cov "9.918181"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 35111192 35111329 1000 - . gene_id "STRG.100"; transcript_id "STRG.100.1"; exon_number "3"; cov "6.724638"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 35116207 35116373 1000 - . gene_id "STRG.100"; transcript_id "STRG.100.1"; exon_number "4"; cov "10.000000"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 35120349 35120429 1000 - . gene_id "STRG.100"; transcript_id "STRG.100.1"; exon_number "5"; cov "4.000000"; PGA_scaffold15__101_contigs__length_47938513 StringTie transcript 45235250 45235503 1000 . . gene_id "STRG.101"; transcript_id "STRG.101.1"; cov "2.651575"; FPKM "5148.389415"; TPM "3926.258517"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 45235250 45235503 1000 . . gene_id "STRG.101"; transcript_id "STRG.101.1"; exon_number "1"; cov "2.651575"; PGA_scaffold15__101_contigs__length_47938513 StringTie transcript 46551063 46551316 1000 . . gene_id "STRG.102"; transcript_id "STRG.102.1"; cov "2.651575"; FPKM "5148.389415"; TPM "3926.258517"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 46551063 46551316 1000 . . gene_id "STRG.102"; transcript_id "STRG.102.1"; exon_number "1"; cov "2.651575"; PGA_scaffold15__101_contigs__length_47938513 StringTie transcript 45233210 45235192 1000 - . gene_id "STRG.103"; transcript_id "STRG.103.1"; cov "7.501969"; FPKM "14566.081589"; TPM "11108.367546"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 45233210 45233426 1000 - . gene_id "STRG.103"; transcript_id "STRG.103.1"; exon_number "1"; cov "8.269586"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 45235156 45235192 1000 - . gene_id "STRG.103"; transcript_id "STRG.103.1"; exon_number "2"; cov "3.000000"; PGA_scaffold16__33_contigs__length_31980953 StringTie transcript 2201107 2201322 1000 . . gene_id "STRG.104"; transcript_id "STRG.104.1"; cov "9.055555"; FPKM "17582.577716"; TPM "13408.804179"; PGA_scaffold16__33_contigs__length_31980953 StringTie exon 2201107 2201322 1000 . . gene_id "STRG.104"; transcript_id "STRG.104.1"; exon_number "1"; cov "9.055555"; PGA_scaffold15__101_contigs__length_47938513 StringTie transcript 46551374 46555756 1000 + . gene_id "STRG.105"; transcript_id "STRG.105.1"; cov "7.199713"; FPKM "13979.210922"; TPM "10660.808947"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 46551374 46551410 1000 + . gene_id "STRG.105"; transcript_id "STRG.105.1"; exon_number "1"; cov "3.000000"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 46553140 46553396 1000 + . gene_id "STRG.105"; transcript_id "STRG.105.1"; exon_number "2"; cov "8.686770"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 46555703 46555756 1000 + . gene_id "STRG.105"; transcript_id "STRG.105.1"; exon_number "3"; cov "3.000000"; PGA_scaffold16__33_contigs__length_31980953 StringTie transcript 9746734 9746949 1000 . . gene_id "STRG.106"; transcript_id "STRG.106.1"; cov "13.180555"; FPKM "25591.819897"; TPM "19516.802776"; PGA_scaffold16__33_contigs__length_31980953 StringTie exon 9746734 9746949 1000 . . gene_id "STRG.106"; transcript_id "STRG.106.1"; exon_number "1"; cov "13.180555"; PGA_scaffold16__33_contigs__length_31980953 StringTie transcript 14644333 14644606 1000 . . gene_id "STRG.107"; transcript_id "STRG.107.1"; cov "4.394161"; FPKM "8531.854456"; TPM "6506.552539"; PGA_scaffold16__33_contigs__length_31980953 StringTie exon 14644333 14644606 1000 . . gene_id "STRG.107"; transcript_id "STRG.107.1"; exon_number "1"; cov "4.394161"; PGA_scaffold17__51_contigs__length_34923512 StringTie transcript 16922025 16922293 1000 . . gene_id "STRG.108"; transcript_id "STRG.108.1"; cov "3.342007"; FPKM "6488.955984"; TPM "4948.599774"; PGA_scaffold17__51_contigs__length_34923512 StringTie exon 16922025 16922293 1000 . . gene_id "STRG.108"; transcript_id "STRG.108.1"; exon_number "1"; cov "3.342007"; PGA_scaffold17__51_contigs__length_34923512 StringTie transcript 5709994 5710283 1000 + . gene_id "STRG.109"; transcript_id "STRG.109.1"; cov "3.100000"; FPKM "6019.066851"; TPM "4590.253491"; PGA_scaffold17__51_contigs__length_34923512 StringTie exon 5709994 5710283 1000 + . gene_id "STRG.109"; transcript_id "STRG.109.1"; exon_number "1"; cov "3.100000"; PGA_scaffold17__51_contigs__length_34923512 StringTie transcript 33161585 33161789 1000 . . gene_id "STRG.110"; transcript_id "STRG.110.1"; cov "8.795122"; FPKM "17076.912027"; TPM "13023.174022"; PGA_scaffold17__51_contigs__length_34923512 StringTie exon 33161585 33161789 1000 . . gene_id "STRG.110"; transcript_id "STRG.110.1"; exon_number "1"; cov "8.795122"; PGA_scaffold18__69_contigs__length_27737463 StringTie transcript 3055887 3056089 1000 . . gene_id "STRG.111"; transcript_id "STRG.111.1"; cov "4.423645"; FPKM "8589.101607"; TPM "6550.210292"; PGA_scaffold18__69_contigs__length_27737463 StringTie exon 3055887 3056089 1000 . . gene_id "STRG.111"; transcript_id "STRG.111.1"; exon_number "1"; cov "4.423645"; PGA_scaffold17__51_contigs__length_34923512 StringTie transcript 34349862 34350081 1000 + . gene_id "STRG.112"; transcript_id "STRG.112.1"; cov "4.759091"; FPKM "9240.415123"; TPM "7046.914219"; PGA_scaffold17__51_contigs__length_34923512 StringTie exon 34349862 34350081 1000 + . gene_id "STRG.112"; transcript_id "STRG.112.1"; exon_number "1"; cov "4.759091"; PGA_scaffold18__69_contigs__length_27737463 StringTie transcript 17182060 17182261 1000 - . gene_id "STRG.113"; transcript_id "STRG.113.1"; cov "13.445544"; FPKM "26106.331673"; TPM "19909.179125"; PGA_scaffold18__69_contigs__length_27737463 StringTie exon 17182060 17182261 1000 - . gene_id "STRG.113"; transcript_id "STRG.113.1"; exon_number "1"; cov "13.445544";