# /gscratch/srlab/programs/stringtie-1.3.6.Linux_x86_64/stringtie Geoduck-gonad-RNA-4.sorted.bam -p 28 -o Geoduck-gonad-RNA-4.gtf -G /gscratch/srlab/sam/data/P_generosa/genomes/Pgenerosa_v074_genome_snap02.all.renamed.putative_function.domain_added.gff -C Geoduck-gonad-RNA-4.cov_refs.gtf # StringTie version 1.3.6 PGA_scaffold10__49_contigs__length_53961475 StringTie transcript 37153200 37153399 1000 . . gene_id "STRG.1"; transcript_id "STRG.1.1"; cov "4.510000"; FPKM "132752.479911"; TPM "999999.949250"; PGA_scaffold10__49_contigs__length_53961475 StringTie exon 37153200 37153399 1000 . . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; cov "4.510000";