# /gscratch/srlab/programs/stringtie-1.3.6.Linux_x86_64/stringtie Geoduck-gonad-RNA-1.sorted.bam -p 28 -o Geoduck-gonad-RNA-1.gtf -G /gscratch/srlab/sam/data/P_generosa/genomes/Pgenerosa_v074_genome_snap02.all.renamed.putative_function.domain_added.gff -C Geoduck-gonad-RNA-1.cov_refs.gtf # StringTie version 1.3.6 PGA_scaffold1__77_contigs__length_89643857 StringTie transcript 4108292 4108521 1000 . . gene_id "STRG.1"; transcript_id "STRG.1.1"; cov "2.626087"; FPKM "46151.049172"; TPM "171956.008360"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 4108292 4108521 1000 . . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; cov "2.626087"; PGA_scaffold4__129_contigs__length_65288255 StringTie transcript 64946471 64946814 1000 . . gene_id "STRG.2"; transcript_id "STRG.2.1"; cov "8.720930"; FPKM "153262.275491"; TPM "571045.937164"; PGA_scaffold4__129_contigs__length_65288255 StringTie exon 64946471 64946814 1000 . . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "1"; cov "8.720930"; PGA_scaffold15__101_contigs__length_47938513 StringTie transcript 31771963 31772268 1000 . . gene_id "STRG.3"; transcript_id "STRG.3.1"; cov "3.924837"; FPKM "68975.378721"; TPM "256998.075077"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 31771963 31772268 1000 . . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "1"; cov "3.924837";