# /gscratch/srlab/programs/stringtie-1.3.6.Linux_x86_64/stringtie Geoduck-heart-RNA-6.sorted.bam -p 28 -o Geoduck-heart-RNA-6.gtf -G /gscratch/srlab/sam/data/P_generosa/genomes/Pgenerosa_v070_genome_snap02.all.renamed.putative_function.domain_added.gff -C Geoduck-heart-RNA-6.cov_refs.gtf # StringTie version 1.3.6 PGA_scaffold1__77_contigs__length_89643857 StringTie transcript 27699009 27699265 1000 . . gene_id "STRG.1"; transcript_id "STRG.1.1"; cov "5.848249"; FPKM "17407.419863"; TPM "20984.451692"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 27699009 27699265 1000 . . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; cov "5.848249"; PGA_scaffold1__77_contigs__length_89643857 StringTie transcript 49648812 49649048 1000 . . gene_id "STRG.2"; transcript_id "STRG.2.1"; cov "5.864979"; FPKM "17457.217013"; TPM "21044.481605"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 49648812 49649048 1000 . . gene_id "STRG.2"; transcript_id "STRG.2.1"; exon_number "1"; cov "5.864979"; PGA_scaffold1__77_contigs__length_89643857 StringTie transcript 63569546 63569784 1000 . . gene_id "STRG.3"; transcript_id "STRG.3.1"; cov "5.020920"; FPKM "14944.859998"; TPM "18015.863071"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 63569546 63569784 1000 . . gene_id "STRG.3"; transcript_id "STRG.3.1"; exon_number "1"; cov "5.020920"; PGA_scaffold1__77_contigs__length_89643857 StringTie transcript 78504437 78505290 1000 + . gene_id "STRG.4"; transcript_id "STRG.4.1"; cov "4.155963"; FPKM "12370.299704"; TPM "14912.259175"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 78504437 78504484 1000 + . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "1"; cov "3.000000"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 78505121 78505290 1000 + . gene_id "STRG.4"; transcript_id "STRG.4.1"; exon_number "2"; cov "4.482353"; PGA_scaffold1__77_contigs__length_89643857 StringTie transcript 85119036 85130519 1000 - . gene_id "STRG.5"; transcript_id "STRG.5.1"; cov "2.540698"; FPKM "7562.433958"; TPM "9116.430310"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 85119036 85119123 1000 - . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "1"; cov "1.875000"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 85128157 85128236 1000 - . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "2"; cov "3.425000"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 85128787 85128890 1000 - . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "3"; cov "3.490385"; PGA_scaffold1__77_contigs__length_89643857 StringTie exon 85130448 85130519 1000 - . gene_id "STRG.5"; transcript_id "STRG.5.1"; exon_number "4"; cov "1.000000"; PGA_scaffold2__36_contigs__length_69596280 StringTie transcript 15427450 15427662 1000 . . gene_id "STRG.6"; transcript_id "STRG.6.1"; cov "2.812207"; FPKM "8370.585450"; TPM "10090.647977"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 15427450 15427662 1000 . . gene_id "STRG.6"; transcript_id "STRG.6.1"; exon_number "1"; cov "2.812207"; PGA_scaffold2__36_contigs__length_69596280 StringTie transcript 15520863 15521084 1000 . . gene_id "STRG.7"; transcript_id "STRG.7.1"; cov "4.058558"; FPKM "12080.371944"; TPM "14562.754474"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 15520863 15521084 1000 . . gene_id "STRG.7"; transcript_id "STRG.7.1"; exon_number "1"; cov "4.058558"; PGA_scaffold2__36_contigs__length_69596280 StringTie transcript 28117923 28118732 1000 - . gene_id "STRG.8"; transcript_id "STRG.8.1"; cov "2.706827"; FPKM "8056.919957"; TPM "9712.527702"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 28117923 28117984 1000 - . gene_id "STRG.8"; transcript_id "STRG.8.1"; exon_number "1"; cov "2.693548"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 28118297 28118732 1000 - . gene_id "STRG.8"; transcript_id "STRG.8.1"; exon_number "2"; cov "2.708716"; PGA_scaffold2__36_contigs__length_69596280 StringTie transcript 28131872 28132582 1000 - . gene_id "STRG.9"; transcript_id "STRG.9.1"; cov "4.143885"; FPKM "12334.349317"; TPM "14868.921381"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 28131872 28131984 1000 - . gene_id "STRG.9"; transcript_id "STRG.9.1"; exon_number "1"; cov "3.230088"; PGA_scaffold2__36_contigs__length_69596280 StringTie exon 28132418 28132582 1000 - . gene_id "STRG.9"; transcript_id "STRG.9.1"; exon_number "2"; cov "4.769697"; PGA_scaffold3__111_contigs__length_57743597 StringTie transcript 8651948 8652982 1000 - . gene_id "STRG.10"; transcript_id "STRG.10.1"; reference_id "PGEN_00002602-RA"; ref_gene_id "PGEN_00002602"; cov "0.245411"; FPKM "730.470320"; TPM "880.573873"; PGA_scaffold3__111_contigs__length_57743597 StringTie exon 8651948 8652982 1000 - . gene_id "STRG.10"; transcript_id "STRG.10.1"; exon_number "1"; reference_id "PGEN_00002602-RA"; ref_gene_id "PGEN_00002602"; cov "0.245411"; PGA_scaffold3__111_contigs__length_57743597 StringTie transcript 7271863 7286148 1000 - . gene_id "STRG.11"; transcript_id "STRG.11.1"; reference_id "PGEN_00002548-RA"; ref_gene_id "PGEN_00002548"; cov "0.387330"; FPKM "1152.894813"; TPM "1389.801917"; PGA_scaffold3__111_contigs__length_57743597 StringTie exon 7271863 7272691 1000 - . gene_id "STRG.11"; transcript_id "STRG.11.1"; exon_number "1"; reference_id "PGEN_00002548-RA"; ref_gene_id "PGEN_00002548"; cov "0.059107"; PGA_scaffold3__111_contigs__length_57743597 StringTie exon 7276036 7276165 1000 - . gene_id "STRG.11"; transcript_id "STRG.11.1"; exon_number "2"; reference_id "PGEN_00002548-RA"; ref_gene_id "PGEN_00002548"; cov "1.469231"; PGA_scaffold3__111_contigs__length_57743597 StringTie exon 7285861 7286148 1000 - . gene_id "STRG.11"; transcript_id "STRG.11.1"; exon_number "3"; reference_id "PGEN_00002548-RA"; ref_gene_id "PGEN_00002548"; cov "0.843750"; PGA_scaffold4__129_contigs__length_65288255 StringTie transcript 1986815 1987326 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.1"; cov "10.263414"; FPKM "30549.239049"; TPM "36826.769052"; PGA_scaffold4__129_contigs__length_65288255 StringTie exon 1986815 1986904 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "1"; cov "7.400000"; PGA_scaffold4__129_contigs__length_65288255 StringTie exon 1987212 1987326 1000 + . gene_id "STRG.12"; transcript_id "STRG.12.1"; exon_number "2"; cov "12.504348"; PGA_scaffold4__129_contigs__length_65288255 StringTie transcript 3190526 3190771 1000 . . gene_id "STRG.13"; transcript_id "STRG.13.1"; cov "4.650406"; FPKM "13842.018316"; TPM "16686.399648"; PGA_scaffold4__129_contigs__length_65288255 StringTie exon 3190526 3190771 1000 . . gene_id "STRG.13"; transcript_id "STRG.13.1"; exon_number "1"; cov "4.650406"; PGA_scaffold4__129_contigs__length_65288255 StringTie transcript 45226264 45227461 1000 - . gene_id "STRG.14"; transcript_id "STRG.14.1"; cov "2.778846"; FPKM "8271.285825"; TPM "9970.943379"; PGA_scaffold4__129_contigs__length_65288255 StringTie exon 45226264 45226367 1000 - . gene_id "STRG.14"; transcript_id "STRG.14.1"; exon_number "1"; cov "2.884615"; PGA_scaffold4__129_contigs__length_65288255 StringTie exon 45227358 45227461 1000 - . gene_id "STRG.14"; transcript_id "STRG.14.1"; exon_number "2"; cov "2.673077"; PGA_scaffold5__109_contigs__length_67248332 StringTie transcript 25648101 25648413 1000 . . gene_id "STRG.15"; transcript_id "STRG.15.1"; cov "4.693291"; FPKM "13969.666301"; TPM "16840.277879"; PGA_scaffold5__109_contigs__length_67248332 StringTie exon 25648101 25648413 1000 . . gene_id "STRG.15"; transcript_id "STRG.15.1"; exon_number "1"; cov "4.693291"; PGA_scaffold5__109_contigs__length_67248332 StringTie transcript 25648522 25684709 1000 - . gene_id "STRG.16"; transcript_id "STRG.16.1"; cov "8.084435"; FPKM "24063.468296"; TPM "29008.244299"; PGA_scaffold5__109_contigs__length_67248332 StringTie exon 25648522 25649320 1000 - . gene_id "STRG.16"; transcript_id "STRG.16.1"; exon_number "1"; cov "8.284418"; PGA_scaffold5__109_contigs__length_67248332 StringTie exon 25684677 25684709 1000 - . gene_id "STRG.16"; transcript_id "STRG.16.1"; exon_number "2"; cov "3.242424"; PGA_scaffold6__104_contigs__length_61759565 StringTie transcript 45608639 45608911 1000 . . gene_id "STRG.17"; transcript_id "STRG.17.1"; cov "7.487179"; FPKM "22285.724913"; TPM "26865.194357"; PGA_scaffold6__104_contigs__length_61759565 StringTie exon 45608639 45608911 1000 . . gene_id "STRG.17"; transcript_id "STRG.17.1"; exon_number "1"; cov "7.487179"; PGA_scaffold7__69_contigs__length_43120122 StringTie transcript 1738676 1739632 1000 + . gene_id "STRG.18"; transcript_id "STRG.18.1"; cov "3.668033"; FPKM "10917.967156"; TPM "13161.488386"; PGA_scaffold7__69_contigs__length_43120122 StringTie exon 1738676 1738726 1000 + . gene_id "STRG.18"; transcript_id "STRG.18.1"; exon_number "1"; cov "1.000000"; PGA_scaffold7__69_contigs__length_43120122 StringTie exon 1739196 1739632 1000 + . gene_id "STRG.18"; transcript_id "STRG.18.1"; exon_number "2"; cov "3.979405"; PGA_scaffold8__63_contigs__length_61151155 StringTie transcript 27842586 27842808 1000 . . gene_id "STRG.19"; transcript_id "STRG.19.1"; cov "5.399103"; FPKM "16070.528598"; TPM "19372.844091"; PGA_scaffold8__63_contigs__length_61151155 StringTie exon 27842586 27842808 1000 . . gene_id "STRG.19"; transcript_id "STRG.19.1"; exon_number "1"; cov "5.399103"; PGA_scaffold8__63_contigs__length_61151155 StringTie transcript 51254211 51255608 1000 + . gene_id "STRG.20"; transcript_id "STRG.20.1"; cov "5.310954"; FPKM "15808.151491"; TPM "19056.551397"; PGA_scaffold8__63_contigs__length_61151155 StringTie exon 51254211 51254385 1000 + . gene_id "STRG.20"; transcript_id "STRG.20.1"; exon_number "1"; cov "5.502857"; PGA_scaffold8__63_contigs__length_61151155 StringTie exon 51255501 51255608 1000 + . gene_id "STRG.20"; transcript_id "STRG.20.1"; exon_number "2"; cov "5.000000"; PGA_scaffold7__69_contigs__length_43120122 StringTie transcript 13802721 13802959 1000 . . gene_id "STRG.21"; transcript_id "STRG.21.1"; cov "6.309623"; FPKM "18780.707992"; TPM "22639.935310"; PGA_scaffold7__69_contigs__length_43120122 StringTie exon 13802721 13802959 1000 . . gene_id "STRG.21"; transcript_id "STRG.21.1"; exon_number "1"; cov "6.309623"; PGA_scaffold7__69_contigs__length_43120122 StringTie transcript 4976262 4983944 1000 - . gene_id "STRG.22"; transcript_id "STRG.22.1"; cov "3.388060"; FPKM "10084.622413"; TPM "12156.900536"; PGA_scaffold7__69_contigs__length_43120122 StringTie exon 4976262 4976320 1000 - . gene_id "STRG.22"; transcript_id "STRG.22.1"; exon_number "1"; cov "2.000000"; PGA_scaffold7__69_contigs__length_43120122 StringTie exon 4977006 4977092 1000 - . gene_id "STRG.22"; transcript_id "STRG.22.1"; exon_number "2"; cov "2.344828"; PGA_scaffold7__69_contigs__length_43120122 StringTie exon 4980648 4980737 1000 - . gene_id "STRG.22"; transcript_id "STRG.22.1"; exon_number "3"; cov "5.133333"; PGA_scaffold7__69_contigs__length_43120122 StringTie exon 4983913 4983944 1000 - . gene_id "STRG.22"; transcript_id "STRG.22.1"; exon_number "4"; cov "3.875000"; PGA_scaffold8__63_contigs__length_61151155 StringTie transcript 17413359 17413588 1000 . . gene_id "STRG.23"; transcript_id "STRG.23.1"; cov "5.234783"; FPKM "15581.427120"; TPM "18783.237681"; PGA_scaffold8__63_contigs__length_61151155 StringTie exon 17413359 17413588 1000 . . gene_id "STRG.23"; transcript_id "STRG.23.1"; exon_number "1"; cov "5.234783"; PGA_scaffold9__45_contigs__length_38581958 StringTie transcript 6914000 6916669 1000 - . gene_id "STRG.24"; transcript_id "STRG.24.1"; cov "2.736364"; FPKM "8144.837377"; TPM "9818.511177"; PGA_scaffold9__45_contigs__length_38581958 StringTie exon 6914000 6914044 1000 - . gene_id "STRG.24"; transcript_id "STRG.24.1"; exon_number "1"; cov "2.000000"; PGA_scaffold9__45_contigs__length_38581958 StringTie exon 6916495 6916669 1000 - . gene_id "STRG.24"; transcript_id "STRG.24.1"; exon_number "2"; cov "2.925714"; PGA_scaffold9__45_contigs__length_38581958 StringTie transcript 24279373 24280267 1000 + . gene_id "STRG.25"; transcript_id "STRG.25.1"; reference_id "PGEN_00006858-RA"; ref_gene_id "PGEN_00006858"; cov "1.098039"; FPKM "3268.333120"; TPM "3939.939348"; PGA_scaffold9__45_contigs__length_38581958 StringTie exon 24279373 24279466 1000 + . gene_id "STRG.25"; transcript_id "STRG.25.1"; exon_number "1"; reference_id "PGEN_00006858-RA"; ref_gene_id "PGEN_00006858"; cov "0.489362"; PGA_scaffold9__45_contigs__length_38581958 StringTie exon 24280107 24280267 1000 + . gene_id "STRG.25"; transcript_id "STRG.25.1"; exon_number "2"; reference_id "PGEN_00006858-RA"; ref_gene_id "PGEN_00006858"; cov "1.453416"; PGA_scaffold9__45_contigs__length_38581958 StringTie transcript 29869263 29869465 1000 . . gene_id "STRG.26"; transcript_id "STRG.26.1"; cov "11.463055"; FPKM "34119.992376"; TPM "41131.272607"; PGA_scaffold9__45_contigs__length_38581958 StringTie exon 29869263 29869465 1000 . . gene_id "STRG.26"; transcript_id "STRG.26.1"; exon_number "1"; cov "11.463055"; PGA_scaffold10__49_contigs__length_53961475 StringTie transcript 4484498 4485723 1000 + . gene_id "STRG.27"; transcript_id "STRG.27.1"; cov "2.834906"; FPKM "8438.149438"; TPM "10172.095615"; PGA_scaffold10__49_contigs__length_53961475 StringTie exon 4484498 4484654 1000 + . gene_id "STRG.27"; transcript_id "STRG.27.1"; exon_number "1"; cov "3.127388"; PGA_scaffold10__49_contigs__length_53961475 StringTie exon 4485669 4485723 1000 + . gene_id "STRG.27"; transcript_id "STRG.27.1"; exon_number "2"; cov "2.000000"; PGA_scaffold9__45_contigs__length_38581958 StringTie transcript 33243672 33244886 1000 + . gene_id "STRG.28"; transcript_id "STRG.28.1"; cov "2.813084"; FPKM "8373.195857"; TPM "10093.794793"; PGA_scaffold9__45_contigs__length_38581958 StringTie exon 33243672 33243676 1000 + . gene_id "STRG.28"; transcript_id "STRG.28.1"; exon_number "1"; cov "2.000000"; PGA_scaffold9__45_contigs__length_38581958 StringTie exon 33244291 33244457 1000 + . gene_id "STRG.28"; transcript_id "STRG.28.1"; exon_number "2"; cov "3.041916"; PGA_scaffold9__45_contigs__length_38581958 StringTie exon 33244845 33244886 1000 + . gene_id "STRG.28"; transcript_id "STRG.28.1"; exon_number "3"; cov "2.000000"; PGA_scaffold10__49_contigs__length_53961475 StringTie transcript 25488561 25493996 1000 + . gene_id "STRG.29"; transcript_id "STRG.29.1"; cov "2.817829"; FPKM "8387.319436"; TPM "10110.820611"; PGA_scaffold10__49_contigs__length_53961475 StringTie exon 25488561 25488601 1000 + . gene_id "STRG.29"; transcript_id "STRG.29.1"; exon_number "1"; cov "2.000000"; PGA_scaffold10__49_contigs__length_53961475 StringTie exon 25492178 25492324 1000 + . gene_id "STRG.29"; transcript_id "STRG.29.1"; exon_number "2"; cov "2.959184"; PGA_scaffold10__49_contigs__length_53961475 StringTie exon 25493927 25493996 1000 + . gene_id "STRG.29"; transcript_id "STRG.29.1"; exon_number "3"; cov "3.000000"; PGA_scaffold10__49_contigs__length_53961475 StringTie transcript 41594355 41594651 1000 . . gene_id "STRG.30"; transcript_id "STRG.30.1"; cov "6.037037"; FPKM "17969.350789"; TPM "21661.853196"; PGA_scaffold10__49_contigs__length_53961475 StringTie exon 41594355 41594651 1000 . . gene_id "STRG.30"; transcript_id "STRG.30.1"; exon_number "1"; cov "6.037037"; PGA_scaffold10__49_contigs__length_53961475 StringTie transcript 41640281 41640490 1000 . . gene_id "STRG.31"; transcript_id "STRG.31.1"; cov "2.871428"; FPKM "8546.857837"; TPM "10303.142386"; PGA_scaffold10__49_contigs__length_53961475 StringTie exon 41640281 41640490 1000 . . gene_id "STRG.31"; transcript_id "STRG.31.1"; exon_number "1"; cov "2.871428"; PGA_scaffold11__79_contigs__length_51449921 StringTie transcript 1719737 1720021 1000 . . gene_id "STRG.32"; transcript_id "STRG.32.1"; cov "3.168421"; FPKM "9430.862921"; TPM "11368.800715"; PGA_scaffold11__79_contigs__length_51449921 StringTie exon 1719737 1720021 1000 . . gene_id "STRG.32"; transcript_id "STRG.32.1"; exon_number "1"; cov "3.168421"; PGA_scaffold11__79_contigs__length_51449921 StringTie transcript 12772089 12772374 1000 . . gene_id "STRG.33"; transcript_id "STRG.33.1"; cov "3.167832"; FPKM "9429.109752"; TPM "11366.687289"; PGA_scaffold11__79_contigs__length_51449921 StringTie exon 12772089 12772374 1000 . . gene_id "STRG.33"; transcript_id "STRG.33.1"; exon_number "1"; cov "3.167832"; PGA_scaffold12__71_contigs__length_50438331 StringTie transcript 28191546 28191836 1000 - . gene_id "STRG.34"; transcript_id "STRG.34.1"; reference_id "PGEN_00005321-RA"; ref_gene_id "PGEN_00005321"; cov "0.199313"; FPKM "593.258781"; TPM "715.166885"; PGA_scaffold12__71_contigs__length_50438331 StringTie exon 28191546 28191836 1000 - . gene_id "STRG.34"; transcript_id "STRG.34.1"; exon_number "1"; reference_id "PGEN_00005321-RA"; ref_gene_id "PGEN_00005321"; cov "0.199313"; PGA_scaffold12__71_contigs__length_50438331 StringTie transcript 37962786 37963037 1000 . . gene_id "STRG.35"; transcript_id "STRG.35.1"; cov "3.555556"; FPKM "10583.177313"; TPM "12757.902942"; PGA_scaffold12__71_contigs__length_50438331 StringTie exon 37962786 37963037 1000 . . gene_id "STRG.35"; transcript_id "STRG.35.1"; exon_number "1"; cov "3.555556"; PGA_scaffold12__71_contigs__length_50438331 StringTie transcript 34885671 34896138 1000 - . gene_id "STRG.36"; transcript_id "STRG.36.1"; cov "10.459459"; FPKM "31132.770569"; TPM "37530.209831"; PGA_scaffold12__71_contigs__length_50438331 StringTie exon 34885671 34885711 1000 - . gene_id "STRG.36"; transcript_id "STRG.36.1"; exon_number "1"; cov "9.000000"; PGA_scaffold12__71_contigs__length_50438331 StringTie exon 34895921 34896138 1000 - . gene_id "STRG.36"; transcript_id "STRG.36.1"; exon_number "2"; cov "10.733945"; PGA_scaffold13__52_contigs__length_44396874 StringTie transcript 37013308 37014943 1000 + . gene_id "STRG.37"; transcript_id "STRG.37.1"; cov "2.637168"; FPKM "7849.578673"; TPM "9462.580082"; PGA_scaffold13__52_contigs__length_44396874 StringTie exon 37013308 37013429 1000 + . gene_id "STRG.37"; transcript_id "STRG.37.1"; exon_number "1"; cov "2.754098"; PGA_scaffold13__52_contigs__length_44396874 StringTie exon 37014840 37014943 1000 + . gene_id "STRG.37"; transcript_id "STRG.37.1"; exon_number "2"; cov "2.500000"; PGA_scaffold13__52_contigs__length_44396874 StringTie transcript 38859746 38859954 1000 . . gene_id "STRG.38"; transcript_id "STRG.38.1"; cov "5.741627"; FPKM "17090.057534"; TPM "20601.874923"; PGA_scaffold13__52_contigs__length_44396874 StringTie exon 38859746 38859954 1000 . . gene_id "STRG.38"; transcript_id "STRG.38.1"; exon_number "1"; cov "5.741627"; PGA_scaffold14__91_contigs__length_45393038 StringTie transcript 25307893 25308165 1000 . . gene_id "STRG.39"; transcript_id "STRG.39.1"; cov "3.311355"; FPKM "9856.308580"; TPM "11881.670742"; PGA_scaffold14__91_contigs__length_45393038 StringTie exon 25307893 25308165 1000 . . gene_id "STRG.39"; transcript_id "STRG.39.1"; exon_number "1"; cov "3.311355"; PGA_scaffold14__91_contigs__length_45393038 StringTie transcript 30442587 30442936 1000 . . gene_id "STRG.40"; transcript_id "STRG.40.1"; cov "3.435238"; FPKM "10225.048590"; TPM "12326.182736"; PGA_scaffold14__91_contigs__length_45393038 StringTie exon 30442587 30442936 1000 . . gene_id "STRG.40"; transcript_id "STRG.40.1"; exon_number "1"; cov "3.435238"; PGA_scaffold14__91_contigs__length_45393038 StringTie transcript 41713389 41713876 1000 + . gene_id "STRG.41"; transcript_id "STRG.41.1"; cov "4.273585"; FPKM "12720.403733"; TPM "15334.305702"; PGA_scaffold14__91_contigs__length_45393038 StringTie exon 41713389 41713434 1000 + . gene_id "STRG.41"; transcript_id "STRG.41.1"; exon_number "1"; cov "3.000000"; PGA_scaffold14__91_contigs__length_45393038 StringTie exon 41713711 41713876 1000 + . gene_id "STRG.41"; transcript_id "STRG.41.1"; exon_number "2"; cov "4.626506"; PGA_scaffold14__91_contigs__length_45393038 StringTie transcript 30461402 30466389 1000 - . gene_id "STRG.42"; transcript_id "STRG.42.1"; cov "4.498973"; FPKM "13391.275228"; TPM "16143.033852"; PGA_scaffold14__91_contigs__length_45393038 StringTie exon 30461402 30463035 1000 - . gene_id "STRG.42"; transcript_id "STRG.42.1"; exon_number "1"; cov "4.184619"; PGA_scaffold14__91_contigs__length_45393038 StringTie exon 30466239 30466389 1000 - . gene_id "STRG.42"; transcript_id "STRG.42.1"; exon_number "2"; cov "7.900662"; PGA_scaffold15__101_contigs__length_47938513 StringTie transcript 7868245 7868498 1000 . . gene_id "STRG.43"; transcript_id "STRG.43.1"; cov "5.940945"; FPKM "17683.331198"; TPM "21317.059749"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 7868245 7868498 1000 . . gene_id "STRG.43"; transcript_id "STRG.43.1"; exon_number "1"; cov "5.940945"; PGA_scaffold15__101_contigs__length_47938513 StringTie transcript 7369808 7371460 1000 - . gene_id "STRG.44"; transcript_id "STRG.44.1"; cov "2.949219"; FPKM "8778.404168"; TPM "10582.268921"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 7369808 7369888 1000 - . gene_id "STRG.44"; transcript_id "STRG.44.1"; exon_number "1"; cov "2.000000"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 7370483 7370557 1000 - . gene_id "STRG.44"; transcript_id "STRG.44.1"; exon_number "2"; cov "3.906667"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 7371361 7371460 1000 - . gene_id "STRG.44"; transcript_id "STRG.44.1"; exon_number "3"; cov "3.000000"; PGA_scaffold15__101_contigs__length_47938513 StringTie transcript 15997511 16003033 1000 - . gene_id "STRG.45"; transcript_id "STRG.45.1"; cov "4.746001"; FPKM "14126.558578"; TPM "17029.409780"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 15997511 15997588 1000 - . gene_id "STRG.45"; transcript_id "STRG.45.1"; exon_number "1"; cov "3.600427"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 16002618 16002724 1000 - . gene_id "STRG.45"; transcript_id "STRG.45.1"; exon_number "2"; cov "6.884735"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 16002962 16003033 1000 - . gene_id "STRG.45"; transcript_id "STRG.45.1"; exon_number "3"; cov "2.808642"; PGA_scaffold15__101_contigs__length_47938513 StringTie transcript 43393322 43393522 1000 . . gene_id "STRG.46"; transcript_id "STRG.46.1"; cov "2.995025"; FPKM "8914.746563"; TPM "10746.628167"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 43393322 43393522 1000 . . gene_id "STRG.46"; transcript_id "STRG.46.1"; exon_number "1"; cov "2.995025"; PGA_scaffold15__101_contigs__length_47938513 StringTie transcript 35205382 35211902 1000 + . gene_id "STRG.47"; transcript_id "STRG.47.1"; cov "2.617512"; FPKM "7791.072230"; TPM "9392.051214"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 35205382 35205438 1000 + . gene_id "STRG.47"; transcript_id "STRG.47.1"; exon_number "1"; cov "1.789474"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 35208463 35208603 1000 + . gene_id "STRG.47"; transcript_id "STRG.47.1"; exon_number "2"; cov "3.035461"; PGA_scaffold15__101_contigs__length_47938513 StringTie exon 35211884 35211902 1000 + . gene_id "STRG.47"; transcript_id "STRG.47.1"; exon_number "3"; cov "2.000000"; PGA_scaffold16__33_contigs__length_31980953 StringTie transcript 9747720 9747940 1000 . . gene_id "STRG.48"; transcript_id "STRG.48.1"; cov "6.832579"; FPKM "20337.296069"; TPM "24516.384983"; PGA_scaffold16__33_contigs__length_31980953 StringTie exon 9747720 9747940 1000 . . gene_id "STRG.48"; transcript_id "STRG.48.1"; exon_number "1"; cov "6.832579"; PGA_scaffold16__33_contigs__length_31980953 StringTie transcript 21985608 21986005 1000 . . gene_id "STRG.49"; transcript_id "STRG.49.1"; cov "8.319096"; FPKM "24761.941044"; TPM "29850.245455"; PGA_scaffold16__33_contigs__length_31980953 StringTie exon 21985608 21986005 1000 . . gene_id "STRG.49"; transcript_id "STRG.49.1"; exon_number "1"; cov "8.319096"; PGA_scaffold16__33_contigs__length_31980953 StringTie transcript 28157210 28157431 1000 . . gene_id "STRG.50"; transcript_id "STRG.50.1"; cov "2.747748"; FPKM "8178.722061"; TPM "9859.358787"; PGA_scaffold16__33_contigs__length_31980953 StringTie exon 28157210 28157431 1000 . . gene_id "STRG.50"; transcript_id "STRG.50.1"; exon_number "1"; cov "2.747748"; PGA_scaffold258__1_contigs__length_1101056 StringTie transcript 866831 867041 1000 . . gene_id "STRG.51"; transcript_id "STRG.51.1"; cov "7.127962"; FPKM "21216.508958"; TPM "25576.266375"; PGA_scaffold258__1_contigs__length_1101056 StringTie exon 866831 867041 1000 . . gene_id "STRG.51"; transcript_id "STRG.51.1"; exon_number "1"; cov "7.127962"; PGA_scaffold22987__1_contigs__length_3051 StringTie transcript 706 2500 1000 - . gene_id "STRG.52"; transcript_id "STRG.52.1"; reference_id "PGEN_00040135-RA"; ref_gene_id "PGEN_00040135"; cov "1.048611"; FPKM "3121.209776"; TPM "3762.583788"; PGA_scaffold22987__1_contigs__length_3051 StringTie exon 706 819 1000 - . gene_id "STRG.52"; transcript_id "STRG.52.1"; exon_number "1"; reference_id "PGEN_00040135-RA"; ref_gene_id "PGEN_00040135"; cov "0.881579"; PGA_scaffold22987__1_contigs__length_3051 StringTie exon 2399 2500 1000 - . gene_id "STRG.52"; transcript_id "STRG.52.1"; exon_number "2"; reference_id "PGEN_00040135-RA"; ref_gene_id "PGEN_00040135"; cov "1.235294"; PGA_scaffold24334__1_contigs__length_3706 StringTie transcript 1659 1869 1000 - . gene_id "STRG.53"; transcript_id "STRG.53.1"; cov "2.853081"; FPKM "8492.247657"; TPM "10237.310419"; PGA_scaffold24334__1_contigs__length_3706 StringTie exon 1659 1869 1000 - . gene_id "STRG.53"; transcript_id "STRG.53.1"; exon_number "1"; cov "2.853081"; PGA_scaffold33516__1_contigs__length_8300 StringTie transcript 3767 8071 1000 - . gene_id "STRG.54"; transcript_id "STRG.54.1"; reference_id "PGEN_00024660-RA"; ref_gene_id "PGEN_00024660"; cov "0.023384"; FPKM "69.602903"; TPM "83.905528"; PGA_scaffold33516__1_contigs__length_8300 StringTie exon 3767 8071 1000 - . gene_id "STRG.54"; transcript_id "STRG.54.1"; exon_number "1"; reference_id "PGEN_00024660-RA"; ref_gene_id "PGEN_00024660"; cov "0.023384"; PGA_scaffold19750__1_contigs__length_1908 StringTie transcript 549 1247 1000 + . gene_id "STRG.55"; transcript_id "STRG.55.1"; reference_id "PGEN_00045924-RA"; ref_gene_id "PGEN_00045924"; cov "0.349537"; FPKM "1040.403259"; TPM "1254.194596"; PGA_scaffold19750__1_contigs__length_1908 StringTie exon 549 650 1000 + . gene_id "STRG.55"; transcript_id "STRG.55.1"; exon_number "1"; reference_id "PGEN_00045924-RA"; ref_gene_id "PGEN_00045924"; cov "0.411765"; PGA_scaffold19750__1_contigs__length_1908 StringTie exon 1134 1247 1000 + . gene_id "STRG.55"; transcript_id "STRG.55.1"; exon_number "2"; reference_id "PGEN_00045924-RA"; ref_gene_id "PGEN_00045924"; cov "0.293860"; PGA_scaffold34826__1_contigs__length_1153 StringTie transcript 225 444 1000 . . gene_id "STRG.56"; transcript_id "STRG.56.1"; cov "5.790909"; FPKM "17236.746306"; TPM "20778.706612"; PGA_scaffold34826__1_contigs__length_1153 StringTie exon 225 444 1000 . . gene_id "STRG.56"; transcript_id "STRG.56.1"; exon_number "1"; cov "5.790909"; PGA_scaffold34826__1_contigs__length_1153 StringTie transcript 775 1006 1000 . . gene_id "STRG.57"; transcript_id "STRG.57.1"; cov "2.551724"; FPKM "7595.253048"; TPM "9155.993360"; PGA_scaffold34826__1_contigs__length_1153 StringTie exon 775 1006 1000 . . gene_id "STRG.57"; transcript_id "STRG.57.1"; exon_number "1"; cov "2.551724"; PGA_scaffold40802__1_contigs__length_3857 StringTie transcript 957 3374 1000 + . gene_id "STRG.58"; transcript_id "STRG.58.1"; reference_id "PGEN_00036436-RA"; ref_gene_id "PGEN_00036436"; cov "0.777778"; FPKM "2315.070409"; TPM "2790.791717"; PGA_scaffold40802__1_contigs__length_3857 StringTie exon 957 1085 1000 + . gene_id "STRG.58"; transcript_id "STRG.58.1"; exon_number "1"; reference_id "PGEN_00036436-RA"; ref_gene_id "PGEN_00036436"; cov "0.658915"; PGA_scaffold40802__1_contigs__length_3857 StringTie exon 2144 2281 1000 + . gene_id "STRG.58"; transcript_id "STRG.58.1"; exon_number "2"; reference_id "PGEN_00036436-RA"; ref_gene_id "PGEN_00036436"; cov "1.108696"; PGA_scaffold40802__1_contigs__length_3857 StringTie exon 3255 3374 1000 + . gene_id "STRG.58"; transcript_id "STRG.58.1"; exon_number "3"; reference_id "PGEN_00036436-RA"; ref_gene_id "PGEN_00036436"; cov "0.525000"; PGA_scaffold51392__1_contigs__length_1221 StringTie transcript 61 458 1000 . . gene_id "STRG.59"; transcript_id "STRG.59.1"; cov "11.871860"; FPKM "35336.807918"; TPM "42598.130255"; PGA_scaffold51392__1_contigs__length_1221 StringTie exon 61 458 1000 . . gene_id "STRG.59"; transcript_id "STRG.59.1"; exon_number "1"; cov "11.871860"; PGA_scaffold58551__1_contigs__length_10948 StringTie transcript 9779 10744 1000 - . gene_id "STRG.60"; transcript_id "STRG.60.1"; reference_id "PGEN_00020891-RA"; ref_gene_id "PGEN_00020891"; cov "0.304348"; FPKM "905.897375"; TPM "1092.049245"; PGA_scaffold58551__1_contigs__length_10948 StringTie exon 9779 10744 1000 - . gene_id "STRG.60"; transcript_id "STRG.60.1"; exon_number "1"; reference_id "PGEN_00020891-RA"; ref_gene_id "PGEN_00020891"; cov "0.304348"; PGA_scaffold65037__1_contigs__length_3546 StringTie transcript 1459 1779 1000 - . gene_id "STRG.61"; transcript_id "STRG.61.1"; reference_id "PGEN_00037780-RA"; ref_gene_id "PGEN_00037780"; cov "0.058801"; FPKM "175.022249"; TPM "210.987382"; PGA_scaffold65037__1_contigs__length_3546 StringTie exon 1459 1779 1000 - . gene_id "STRG.61"; transcript_id "STRG.61.1"; exon_number "1"; reference_id "PGEN_00037780-RA"; ref_gene_id "PGEN_00037780"; cov "0.058801"; PGA_scaffold69031__1_contigs__length_49096 StringTie transcript 20127 20332 1000 - . gene_id "STRG.62"; transcript_id "STRG.62.1"; cov "5.800971"; FPKM "17266.696033"; TPM "20814.810675"; PGA_scaffold69031__1_contigs__length_49096 StringTie exon 20127 20332 1000 - . gene_id "STRG.62"; transcript_id "STRG.62.1"; exon_number "1"; cov "5.800971"; PGA_scaffold70583__1_contigs__length_1291 StringTie transcript 384 732 1000 . . gene_id "STRG.63"; transcript_id "STRG.63.1"; cov "2.510029"; FPKM "7471.147119"; TPM "9006.385039"; PGA_scaffold70583__1_contigs__length_1291 StringTie exon 384 732 1000 . . gene_id "STRG.63"; transcript_id "STRG.63.1"; exon_number "1"; cov "2.510029"; PGA_scaffold70669__1_contigs__length_1192 StringTie transcript 8 1000 1000 - . gene_id "STRG.64"; transcript_id "STRG.64.1"; reference_id "PGEN_00051084-RA"; ref_gene_id "PGEN_00051084"; cov "0.152064"; FPKM "452.621271"; TPM "545.629925"; PGA_scaffold70669__1_contigs__length_1192 StringTie exon 8 1000 1000 - . gene_id "STRG.64"; transcript_id "STRG.64.1"; exon_number "1"; reference_id "PGEN_00051084-RA"; ref_gene_id "PGEN_00051084"; cov "0.152064"; PGA_scaffold71692__1_contigs__length_2705 StringTie transcript 426 2693 1000 + . gene_id "STRG.65"; transcript_id "STRG.65.1"; reference_id "PGEN_00041853-RA"; ref_gene_id "PGEN_00041853"; cov "0.044386"; FPKM "132.115739"; TPM "159.264059"; PGA_scaffold71692__1_contigs__length_2705 StringTie exon 426 2693 1000 + . gene_id "STRG.65"; transcript_id "STRG.65.1"; exon_number "1"; reference_id "PGEN_00041853-RA"; ref_gene_id "PGEN_00041853"; cov "0.044386"; PGA_scaffold75632__1_contigs__length_1805 StringTie transcript 979 1375 1000 + . gene_id "STRG.66"; transcript_id "STRG.66.1"; reference_id "PGEN_00046535-RA"; ref_gene_id "PGEN_00046535"; cov "0.564232"; FPKM "1679.446844"; TPM "2024.554554"; PGA_scaffold75632__1_contigs__length_1805 StringTie exon 979 1375 1000 + . gene_id "STRG.66"; transcript_id "STRG.66.1"; exon_number "1"; reference_id "PGEN_00046535-RA"; ref_gene_id "PGEN_00046535"; cov "0.564232"; PGA_scaffold75633__1_contigs__length_1805 StringTie transcript 431 827 1000 - . gene_id "STRG.67"; transcript_id "STRG.67.1"; reference_id "PGEN_00046536-RA"; ref_gene_id "PGEN_00046536"; cov "0.564232"; FPKM "1679.446844"; TPM "2024.554554"; PGA_scaffold75633__1_contigs__length_1805 StringTie exon 431 827 1000 - . gene_id "STRG.67"; transcript_id "STRG.67.1"; exon_number "1"; reference_id "PGEN_00046536-RA"; ref_gene_id "PGEN_00046536"; cov "0.564232"; PGA_scaffold104380__1_contigs__length_2974 StringTie transcript 2250 2954 1000 + . gene_id "STRG.68"; transcript_id "STRG.68.1"; reference_id "PGEN_00040487-RA"; ref_gene_id "PGEN_00040487"; cov "0.187234"; FPKM "557.305417"; TPM "671.825503"; PGA_scaffold104380__1_contigs__length_2974 StringTie exon 2250 2954 1000 + . gene_id "STRG.68"; transcript_id "STRG.68.1"; exon_number "1"; reference_id "PGEN_00040487-RA"; ref_gene_id "PGEN_00040487"; cov "0.187234"; PGA_scaffold305085__1_contigs__length_26509 StringTie transcript 11194 13077 1000 - . gene_id "STRG.69"; transcript_id "STRG.69.1"; reference_id "PGEN_00012380-RA"; ref_gene_id "PGEN_00012380"; cov "0.019904"; FPKM "59.244619"; TPM "71.418732"; PGA_scaffold305085__1_contigs__length_26509 StringTie exon 11194 13077 1000 - . gene_id "STRG.69"; transcript_id "STRG.69.1"; exon_number "1"; reference_id "PGEN_00012380-RA"; ref_gene_id "PGEN_00012380"; cov "0.019904"; PGA_scaffold313636__6_contigs__length_11037725 StringTie transcript 2059370 2059660 1000 . . gene_id "STRG.70"; transcript_id "STRG.70.1"; cov "3.113402"; FPKM "9267.097864"; TPM "11171.383754"; PGA_scaffold313636__6_contigs__length_11037725 StringTie exon 2059370 2059660 1000 . . gene_id "STRG.70"; transcript_id "STRG.70.1"; exon_number "1"; cov "3.113402"; PGA_scaffold313636__6_contigs__length_11037725 StringTie transcript 6493178 6493468 1000 . . gene_id "STRG.71"; transcript_id "STRG.71.1"; cov "3.113402"; FPKM "9267.097864"; TPM "11171.383754"; PGA_scaffold313636__6_contigs__length_11037725 StringTie exon 6493178 6493468 1000 . . gene_id "STRG.71"; transcript_id "STRG.71.1"; exon_number "1"; cov "3.113402"; PGA_scaffold313643__3_contigs__length_4636261 StringTie transcript 1349568 1349768 1000 . . gene_id "STRG.72"; transcript_id "STRG.72.1"; cov "4.507463"; FPKM "13416.545868"; TPM "16173.497328"; PGA_scaffold313643__3_contigs__length_4636261 StringTie exon 1349568 1349768 1000 . . gene_id "STRG.72"; transcript_id "STRG.72.1"; exon_number "1"; cov "4.507463"; PGA_scaffold313643__3_contigs__length_4636261 StringTie transcript 1558122 1558322 1000 . . gene_id "STRG.73"; transcript_id "STRG.73.1"; cov "4.507463"; FPKM "13416.545868"; TPM "16173.497328"; PGA_scaffold313643__3_contigs__length_4636261 StringTie exon 1558122 1558322 1000 . . gene_id "STRG.73"; transcript_id "STRG.73.1"; exon_number "1"; cov "4.507463";