SHARED_ID	f606389d4673a4d59ea8731759865cd4	
CTL_OPTIONS	maker_gff	
CTL_OPTIONS	other_gff	
CTL_OPTIONS	est	/gscratch/srlab/sam/data/P_generosa/transcriptomes/ctenidia/Trinity.fasta,/gscratch/srlab/sam/data/P_generosa/transcriptomes/gonad/Trinity.fasta,/gscratch/srlab/sam/data/P_generosa/transcriptomes/heart/Trinity.fasta,/gscratch/srlab/sam/data/P_generosa/transcriptomes/juvenile/EPI115/Trinity.fasta,/gscratch/srlab/sam/data/P_generosa/transcriptomes/juvenile/EPI116/Trinity.fasta,/gscratch/srlab/sam/data/P_generosa/transcriptomes/juvenile/EPI123/Trinity.fasta,/gscratch/srlab/sam/data/P_generosa/transcriptomes/juvenile/EPI124/Trinity.fasta,/gscratch/srlab/sam/data/P_generosa/transcriptomes/larvae/EPI99/Trinity.fasta
CTL_OPTIONS	est_reads	
CTL_OPTIONS	altest	
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CTL_OPTIONS	altest_gff	
CTL_OPTIONS	protein	/gscratch/srlab/sam/data/C_gigas/gigas_ncbi_protein/GCA_000297895.1_oyster_v9_protein.faa,/gscratch/srlab/sam/data/C_virginica/virginica_ncbi_protein/GCF_002022765.2_C_virginica-3.0_protein.faa,/gscratch/srlab/sam/data/P_generosa/proteomes/20180827_trinity_geoduck.fasta.transdecoder.pep,/gscratch/srlab/sam/data/P_generosa/proteomes/ctenidia/Trinity.fasta.transdecoder.pep,/gscratch/srlab/sam/data/P_generosa/proteomes/gonad/Trinity.fasta.transdecoder.pep,/gscratch/srlab/sam/data/P_generosa/proteomes/heart/Trinity.fasta.transdecoder.pep,/gscratch/srlab/sam/data/P_generosa/proteomes/juvenile/EPI115/Trinity.fasta.transdecoder.pep,/gscratch/srlab/sam/data/P_generosa/proteomes/juvenile/EPI116/Trinity.fasta.transdecoder.pep,/gscratch/srlab/sam/data/P_generosa/proteomes/juvenile/EPI123/Trinity.fasta.transdecoder.pep,/gscratch/srlab/sam/data/P_generosa/proteomes/juvenile/EPI124/Trinity.fasta.transdecoder.pep,/gscratch/srlab/sam/data/P_generosa/proteomes/larvae/EPI99/Trinity.fasta.transdecoder.pep
CTL_OPTIONS	protein_gff	/gscratch/scrubbed/samwhite/outputs/20190701_pgen_maker_v074_annotation/Pgenerosa_v074.maker.all.noseqs.protein2genome.gff
CTL_OPTIONS	model_org	all
CTL_OPTIONS	repeat_protein	te_proteins.fasta
CTL_OPTIONS	rmlib	/gscratch/srlab/sam/data/P_generosa/repeats/Pgenerosa_v074-families.fa
CTL_OPTIONS	rm_gff	/gscratch/scrubbed/samwhite/outputs/20190701_pgen_maker_v074_annotation/Pgenerosa_v074.maker.all.noseqs.repeats.gff
CTL_OPTIONS	organism_type	eukaryotic
CTL_OPTIONS	predictor	snap
CTL_OPTIONS	est2genome	0
CTL_OPTIONS	altest2genome	0
CTL_OPTIONS	snaphmm	Pgenerosa_v074_snap02.hmm
CTL_OPTIONS	gmhmm	
CTL_OPTIONS	augustus_species	
CTL_OPTIONS	fgenesh_par_file	
CTL_OPTIONS	model_gff	
CTL_OPTIONS	pred_gff	
CTL_OPTIONS	max_dna_len	100000
CTL_OPTIONS	split_hit	10000
CTL_OPTIONS	pred_flank	200
CTL_OPTIONS	pred_stats	0
CTL_OPTIONS	min_protein	0
CTL_OPTIONS	AED_threshold	1
CTL_OPTIONS	single_exon	0
CTL_OPTIONS	single_length	250
CTL_OPTIONS	keep_preds	0
CTL_OPTIONS	map_forward	0
CTL_OPTIONS	est_forward	0
CTL_OPTIONS	correct_est_fusion	0
CTL_OPTIONS	alt_splice	0
CTL_OPTIONS	always_complete	0
CTL_OPTIONS	alt_peptide	C
CTL_OPTIONS	evaluate	0
CTL_OPTIONS	blast_type	ncbi+
CTL_OPTIONS	softmask	1
CTL_OPTIONS	pcov_blastn	0.8
CTL_OPTIONS	pid_blastn	0.85
CTL_OPTIONS	eval_blastn	1e-10
CTL_OPTIONS	bit_blastn	40
CTL_OPTIONS	depth_blastn	0
CTL_OPTIONS	pcov_rm_blastx	0.5
CTL_OPTIONS	pid_rm_blastx	0.4
CTL_OPTIONS	eval_rm_blastx	1e-06
CTL_OPTIONS	bit_rm_blastx	30
CTL_OPTIONS	pcov_blastx	0.5
CTL_OPTIONS	pid_blastx	0.4
CTL_OPTIONS	depth_blastx	0
CTL_OPTIONS	eval_blastx	1e-06
CTL_OPTIONS	bit_blastx	30
CTL_OPTIONS	pcov_tblastx	0.8
CTL_OPTIONS	pid_tblastx	0.85
CTL_OPTIONS	eval_tblastx	1e-10
CTL_OPTIONS	bit_tblastx	40
CTL_OPTIONS	depth_tblastx	0
CTL_OPTIONS	ep_score_limit	20
CTL_OPTIONS	en_score_limit	20
CTL_OPTIONS	enable_fathom	0
CTL_OPTIONS	unmask	0
CTL_OPTIONS	model_pass	0
CTL_OPTIONS	est_pass	0
CTL_OPTIONS	altest_pass	0
CTL_OPTIONS	protein_pass	0
CTL_OPTIONS	rm_pass	0
CTL_OPTIONS	other_pass	0
CTL_OPTIONS	pred_pass	0
CTL_OPTIONS	run	snap
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LOGCHILD	/gscratch/scrubbed/samwhite/outputs/20190701_pgen_maker_v074_annotation/snap02/Pgenerosa_v074_snap02.maker.output/Pgenerosa_v074_snap02_datastore/4E/B0/PGA_scaffold1__77_contigs__length_89643857//theVoid.PGA_scaffold1__77_contigs__length_89643857/run.log.child.572	
LOGCHILD	/gscratch/scrubbed/samwhite/outputs/20190701_pgen_maker_v074_annotation/snap02/Pgenerosa_v074_snap02.maker.output/Pgenerosa_v074_snap02_datastore/4E/B0/PGA_scaffold1__77_contigs__length_89643857//theVoid.PGA_scaffold1__77_contigs__length_89643857/run.log.child.572	
LOGCHILD	/gscratch/scrubbed/samwhite/outputs/20190701_pgen_maker_v074_annotation/snap02/Pgenerosa_v074_snap02.maker.output/Pgenerosa_v074_snap02_datastore/4E/B0/PGA_scaffold1__77_contigs__length_89643857//theVoid.PGA_scaffold1__77_contigs__length_89643857/run.log.child.573	
LOGCHILD	/gscratch/scrubbed/samwhite/outputs/20190701_pgen_maker_v074_annotation/snap02/Pgenerosa_v074_snap02.maker.output/Pgenerosa_v074_snap02_datastore/4E/B0/PGA_scaffold1__77_contigs__length_89643857//theVoid.PGA_scaffold1__77_contigs__length_89643857/run.log.child.573	
LOGCHILD	/gscratch/scrubbed/samwhite/outputs/20190701_pgen_maker_v074_annotation/snap02/Pgenerosa_v074_snap02.maker.output/Pgenerosa_v074_snap02_datastore/4E/B0/PGA_scaffold1__77_contigs__length_89643857//theVoid.PGA_scaffold1__77_contigs__length_89643857/run.log.child.573	
DIED	RANK	0
DIED	COUNT	2