RepeatModeler Version open-1.0.11 ================================ Search Engine = ncbi Random Number Seed: 1561574031 Database = /home/sam/analyses/20190626_Pgenerosa_v074_repeatmodeler/Pgenerosa_v074 . - Sequences = 18 - Bases = 942353201 Using output directory = /home/sam/analyses/20190626_Pgenerosa_v074_repeatmodeler/RM_8927.WedJun261133512019 RepeatModeler Round # 1 ======================== Searching for Repeats -- Sampling from the database... - Gathering up to 40000000 bp - Final Sample Size = 48321454 bp ( 40001299 non ambiguous ) - Num Contigs Represented = 18 -- Running RepeatScout on the sequences... - RepeatScout: Running build_lmer_table ( l = 14 ).. 0 100000 200000 300000 400000 500000 600000 700000 800000 900000 1000000 1100000 1200000 1300000 1400000 1500000 1600000 1700000 1800000 1900000 2000000 2100000 2200000 2300000 2400000 2500000 2600000 2700000 2800000 2900000 3000000 3100000 3200000 3300000 3400000 3500000 3600000 3700000 3800000 3900000 4000000 4100000 4200000 4300000 4400000 4500000 4600000 4700000 4800000 4900000 5000000 5100000 5200000 5300000 5400000 5500000 5600000 5700000 5800000 5900000 6000000 6100000 6200000 6300000 6400000 6500000 6600000 6700000 6800000 6900000 7000000 7100000 7200000 7300000 7400000 7500000 7600000 7700000 7800000 7900000 8000000 8100000 8200000 8300000 8400000 8500000 8600000 8700000 8800000 8900000 9000000 9100000 9200000 9300000 9400000 9500000 9600000 9700000 9800000 9900000 10000000 10100000 10200000 10300000 10400000 10500000 10600000 10700000 10800000 10900000 11000000 11100000 11200000 11300000 11400000 11500000 11600000 11700000 11800000 11900000 12000000 12100000 12200000 12300000 12400000 12500000 12600000 12700000 12800000 12900000 13000000 13100000 13200000 13300000 13400000 13500000 13600000 13700000 13800000 13900000 14000000 14100000 14200000 14300000 14400000 14500000 14600000 14700000 14800000 14900000 15000000 15100000 15200000 15300000 15400000 15500000 15600000 15700000 15800000 15900000 16000000 16100000 16200000 16300000 16400000 16500000 16600000 16700000 16800000 16900000 17000000 17100000 17200000 17300000 17400000 17500000 17600000 17700000 17800000 17900000 18000000 18100000 18200000 18300000 18400000 18500000 18600000 18700000 18800000 18900000 19000000 19100000 19200000 19300000 19400000 19500000 19600000 19700000 19800000 19900000 20000000 20100000 20200000 20300000 20400000 20500000 20600000 20700000 20800000 20900000 21000000 21100000 21200000 21300000 21400000 21500000 21600000 21700000 21800000 21900000 22000000 22100000 22200000 22300000 22400000 22500000 22600000 22700000 22800000 22900000 23000000 23100000 23200000 23300000 23400000 23500000 23600000 23700000 23800000 23900000 24000000 24100000 24200000 24300000 24400000 24500000 24600000 24700000 24800000 24900000 25000000 25100000 25200000 25300000 25400000 25500000 25600000 25700000 25800000 25900000 26000000 26100000 26200000 26300000 26400000 26500000 26600000 26700000 26800000 26900000 27000000 27100000 27200000 27300000 27400000 27500000 27600000 27700000 27800000 27900000 28000000 28100000 28200000 28300000 28400000 28500000 28600000 28700000 28800000 28900000 29000000 29100000 29200000 29300000 29400000 29500000 29600000 29700000 29800000 29900000 30000000 30100000 30200000 30300000 30400000 30500000 30600000 30700000 30800000 30900000 31000000 31100000 31200000 31300000 31400000 31500000 31600000 31700000 31800000 31900000 32000000 32100000 32200000 32300000 32400000 32500000 32600000 32700000 32800000 32900000 33000000 33100000 33200000 33300000 33400000 33500000 33600000 33700000 33800000 33900000 34000000 34100000 34200000 34300000 34400000 34500000 34600000 34700000 34800000 34900000 35000000 35100000 35200000 35300000 35400000 35500000 35600000 35700000 35800000 35900000 36000000 36100000 36200000 36300000 36400000 36500000 36600000 36700000 36800000 36900000 37000000 37100000 37200000 37300000 37400000 37500000 37600000 37700000 37800000 37900000 38000000 38100000 38200000 38300000 38400000 38500000 38600000 38700000 38800000 38900000 39000000 39100000 39200000 39300000 39400000 39500000 39600000 39700000 39800000 39900000 40000000 40100000 40200000 40300000 40400000 40500000 40600000 40700000 40800000 40900000 41000000 41100000 41200000 41300000 41400000 41500000 41600000 41700000 41800000 41900000 42000000 42100000 42200000 42300000 42400000 42500000 42600000 42700000 42800000 42900000 43000000 43100000 43200000 43300000 43400000 43500000 43600000 43700000 43800000 43900000 44000000 44100000 44200000 44300000 44400000 44500000 44600000 44700000 44800000 44900000 45000000 45100000 45200000 45300000 45400000 45500000 45600000 45700000 45800000 45900000 46000000 46100000 46200000 46300000 46400000 46500000 46600000 46700000 46800000 46900000 47000000 47100000 47200000 47300000 47400000 47500000 47600000 47700000 47800000 47900000 48000000 48100000 48200000 48300000 - RepeatScout: Running RepeatScout.. Program duration is 1015.0 sec = 16.9 min = 0.3 hr - Collecting repeat instances... -- Refining Family R=26 / 0 ( RS Elements: 4856, Using 100 ): - numRounds = 10 - Consensus Length = 1407 ( orig = 1403 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:6:51 Elapsed Time Refinement: 00:45:09 (hh:mm:ss) Elapsed Time -- Refining Family R=8 / 1 ( RS Elements: 4195, Using 100 ): - numRounds = 6 - Consensus Length = 2307 ( orig = 2307 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:3:48 Elapsed Time Refinement: 00:03:48 (hh:mm:ss) Elapsed Time -- Refining Family R=56 / 2 ( RS Elements: 2075, Using 100 ): - numRounds = 6 - Consensus Length = 1099 ( orig = 1098 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:1:56 Elapsed Time Refinement: 00:01:56 (hh:mm:ss) Elapsed Time -- Refining Family R=211 / 3 ( RS Elements: 1894, Using 100 ): - numRounds = 6 - Consensus Length = 494 ( orig = 495 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:1:9 Elapsed Time Refinement: 00:01:09 (hh:mm:ss) Elapsed Time -- Refining Family R=1447 / 4 ( RS Elements: 1790, Using 100 ): - numRounds = 4 - Consensus Length = 214 ( orig = 214 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:15 Elapsed Time Refinement: 00:00:15 (hh:mm:ss) Elapsed Time -- Refining Family R=766 / 5 ( RS Elements: 1650, Using 100 ): - numRounds = 6 - Consensus Length = 1094 ( orig = 1090 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=553 / 6 ( RS Elements: 1573, Using 100 ): - numRounds = 4 - Consensus Length = 120 ( orig = 120 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=20 / 7 ( RS Elements: 1556, Using 100 ): - numRounds = 4 - Consensus Length = 997 ( orig = 997 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:1:16 Elapsed Time Refinement: 00:01:16 (hh:mm:ss) Elapsed Time -- Refining Family R=533 / 8 ( RS Elements: 1483, Using 100 ): - numRounds = 8 - Consensus Length = 628 ( orig = 627 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:1:40 Elapsed Time Refinement: 00:01:40 (hh:mm:ss) Elapsed Time -- Refining Family R=177 / 9 ( RS Elements: 1419, Using 100 ): - numRounds = 4 - Consensus Length = 910 ( orig = 912 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:35 Elapsed Time Refinement: 00:00:36 (hh:mm:ss) Elapsed Time -- Refining Family R=733 / 10 ( RS Elements: 1392, Using 100 ): - numRounds = 4 - Consensus Length = 175 ( orig = 175 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=333 / 11 ( RS Elements: 1324, Using 100 ): - numRounds = 6 - Consensus Length = 1185 ( orig = 1188 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:31 Elapsed Time Refinement: 00:00:31 (hh:mm:ss) Elapsed Time -- Refining Family R=1187 / 12 ( RS Elements: 1274, Using 100 ): - numRounds = 4 - Consensus Length = 226 ( orig = 226 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:20 Elapsed Time Refinement: 00:00:20 (hh:mm:ss) Elapsed Time -- Refining Family R=21 / 13 ( RS Elements: 1264, Using 100 ): - numRounds = 5 - Consensus Length = 242 ( orig = 244 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:26 Elapsed Time Refinement: 00:00:26 (hh:mm:ss) Elapsed Time -- Refining Family R=1709 / 14 ( RS Elements: 1249, Using 100 ): - numRounds = 6 - Consensus Length = 387 ( orig = 387 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:41 Elapsed Time Refinement: 00:00:41 (hh:mm:ss) Elapsed Time -- Refining Family R=3 / 15 ( RS Elements: 1237, Using 100 ): - numRounds = 4 - Consensus Length = 251 ( orig = 251 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:15 Elapsed Time Refinement: 00:00:15 (hh:mm:ss) Elapsed Time -- Refining Family R=976 / 16 ( RS Elements: 1132, Using 100 ): - numRounds = 4 - Consensus Length = 132 ( orig = 132 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=1 / 17 ( RS Elements: 1130, Using 100 ): - numRounds = 4 - Consensus Length = 288 ( orig = 288 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:17 Elapsed Time Refinement: 00:00:17 (hh:mm:ss) Elapsed Time -- Refining Family R=7 / 18 ( RS Elements: 1087, Using 100 ): - numRounds = 4 - Consensus Length = 211 ( orig = 211 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:19 Elapsed Time Refinement: 00:00:19 (hh:mm:ss) Elapsed Time -- Refining Family R=89 / 19 ( RS Elements: 1067, Using 100 ): - numRounds = 5 - Consensus Length = 848 ( orig = 851 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:27 Elapsed Time Refinement: 00:00:27 (hh:mm:ss) Elapsed Time -- Refining Family R=144 / 20 ( RS Elements: 1062, Using 100 ): - numRounds = 5 - Consensus Length = 2956 ( orig = 2959 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:32 Elapsed Time Refinement: 00:00:32 (hh:mm:ss) Elapsed Time -- Refining Family R=312 / 21 ( RS Elements: 1059, Using 100 ): - numRounds = 5 - Consensus Length = 712 ( orig = 706 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:18 Elapsed Time Refinement: 00:00:18 (hh:mm:ss) Elapsed Time -- Refining Family R=52 / 22 ( RS Elements: 1056, Using 100 ): - numRounds = 4 - Consensus Length = 398 ( orig = 398 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:28 Elapsed Time Refinement: 00:00:28 (hh:mm:ss) Elapsed Time -- Refining Family R=400 / 23 ( RS Elements: 1051, Using 100 ): - numRounds = 5 - Consensus Length = 1130 ( orig = 1132 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:36 Elapsed Time Refinement: 00:00:36 (hh:mm:ss) Elapsed Time -- Refining Family R=73 / 24 ( RS Elements: 1036, Using 100 ): - numRounds = 5 - Consensus Length = 230 ( orig = 230 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:21 Elapsed Time Refinement: 00:00:21 (hh:mm:ss) Elapsed Time -- Refining Family R=0 / 25 ( RS Elements: 1033, Using 100 ): - numRounds = 4 - Consensus Length = 180 ( orig = 180 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:16 Elapsed Time Refinement: 00:00:17 (hh:mm:ss) Elapsed Time -- Refining Family R=1115 / 26 ( RS Elements: 1006, Using 100 ): - numRounds = 4 - Consensus Length = 206 ( orig = 206 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:14 Elapsed Time Refinement: 00:00:14 (hh:mm:ss) Elapsed Time -- Refining Family R=1136 / 27 ( RS Elements: 994, Using 100 ): - numRounds = 4 - Consensus Length = 132 ( orig = 132 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=1975 / 28 ( RS Elements: 991, Using 100 ): - numRounds = 4 - Consensus Length = 209 ( orig = 209 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:14 (hh:mm:ss) Elapsed Time -- Refining Family R=1234 / 29 ( RS Elements: 979, Using 100 ): - numRounds = 6 - Consensus Length = 231 ( orig = 234 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:15 Elapsed Time Refinement: 00:00:15 (hh:mm:ss) Elapsed Time -- Refining Family R=779 / 30 ( RS Elements: 974, Using 100 ): - numRounds = 4 - Consensus Length = 224 ( orig = 224 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time -- Refining Family R=562 / 31 ( RS Elements: 972, Using 100 ): - numRounds = 4 - Consensus Length = 1010 ( orig = 1010 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:15 Elapsed Time Refinement: 00:00:15 (hh:mm:ss) Elapsed Time -- Refining Family R=1874 / 32 ( RS Elements: 954, Using 100 ): - numRounds = 4 - Consensus Length = 130 ( orig = 130 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=201 / 33 ( RS Elements: 951, Using 100 ): - numRounds = 4 - Consensus Length = 1135 ( orig = 1135 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:17 Elapsed Time Refinement: 00:00:17 (hh:mm:ss) Elapsed Time -- Refining Family R=207 / 34 ( RS Elements: 951, Using 100 ): - numRounds = 5 - Consensus Length = 957 ( orig = 958 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:15 Elapsed Time Refinement: 00:00:15 (hh:mm:ss) Elapsed Time -- Refining Family R=293 / 35 ( RS Elements: 929, Using 100 ): - numRounds = 6 - Consensus Length = 307 ( orig = 307 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:18 Elapsed Time Refinement: 00:00:18 (hh:mm:ss) Elapsed Time -- Refining Family R=723 / 36 ( RS Elements: 914, Using 100 ): - numRounds = 5 - Consensus Length = 104 ( orig = 104 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:14 Elapsed Time Refinement: 00:00:14 (hh:mm:ss) Elapsed Time -- Refining Family R=287 / 37 ( RS Elements: 912, Using 100 ): - numRounds = 6 - Consensus Length = 1822 ( orig = 1836 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:17 Elapsed Time Refinement: 00:00:17 (hh:mm:ss) Elapsed Time -- Refining Family R=11 / 38 ( RS Elements: 901, Using 100 ): - numRounds = 4 - Consensus Length = 213 ( orig = 213 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:16 Elapsed Time Refinement: 00:00:16 (hh:mm:ss) Elapsed Time -- Refining Family R=2 / 39 ( RS Elements: 893, Using 100 ): - numRounds = 5 - Consensus Length = 187 ( orig = 188 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:23 Elapsed Time Refinement: 00:00:23 (hh:mm:ss) Elapsed Time -- Refining Family R=6 / 40 ( RS Elements: 873, Using 100 ): - numRounds = 4 - Consensus Length = 197 ( orig = 197 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time -- Refining Family R=1586 / 41 ( RS Elements: 863, Using 100 ): - numRounds = 4 - Consensus Length = 132 ( orig = 132 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=74 / 42 ( RS Elements: 843, Using 100 ): - numRounds = 4 - Consensus Length = 71 ( orig = 71 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=10 / 43 ( RS Elements: 833, Using 100 ): - numRounds = 6 - Consensus Length = 232 ( orig = 232 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:16 Elapsed Time Refinement: 00:00:16 (hh:mm:ss) Elapsed Time -- Refining Family R=4 / 44 ( RS Elements: 832, Using 100 ): - numRounds = 4 - Consensus Length = 316 ( orig = 316 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:18 Elapsed Time Refinement: 00:00:19 (hh:mm:ss) Elapsed Time -- Refining Family R=357 / 45 ( RS Elements: 815, Using 100 ): - numRounds = 6 - Consensus Length = 211 ( orig = 211 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:15 Elapsed Time Refinement: 00:00:15 (hh:mm:ss) Elapsed Time -- Refining Family R=43 / 46 ( RS Elements: 812, Using 100 ): - numRounds = 4 - Consensus Length = 58 ( orig = 58 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=155 / 47 ( RS Elements: 806, Using 100 ): - numRounds = 4 - Consensus Length = 76 ( orig = 76 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=35 / 48 ( RS Elements: 798, Using 100 ): - numRounds = 6 - Consensus Length = 287 ( orig = 288 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:19 Elapsed Time Refinement: 00:00:19 (hh:mm:ss) Elapsed Time -- Refining Family R=374 / 49 ( RS Elements: 788, Using 100 ): - numRounds = 4 - Consensus Length = 491 ( orig = 491 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:15 Elapsed Time Refinement: 00:00:16 (hh:mm:ss) Elapsed Time -- Refining Family R=30 / 50 ( RS Elements: 780, Using 100 ): - numRounds = 5 - Consensus Length = 669 ( orig = 669 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:33 Elapsed Time Refinement: 00:00:33 (hh:mm:ss) Elapsed Time -- Refining Family R=526 / 51 ( RS Elements: 763, Using 100 ): - numRounds = 4 - Consensus Length = 75 ( orig = 75 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=590 / 52 ( RS Elements: 753, Using 100 ): - numRounds = 5 - Consensus Length = 326 ( orig = 327 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:29 Elapsed Time Refinement: 00:00:29 (hh:mm:ss) Elapsed Time -- Refining Family R=286 / 53 ( RS Elements: 737, Using 100 ): - numRounds = 5 - Consensus Length = 1099 ( orig = 1098 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:30 Elapsed Time Refinement: 00:00:30 (hh:mm:ss) Elapsed Time -- Refining Family R=59 / 54 ( RS Elements: 719, Using 100 ): - numRounds = 5 - Consensus Length = 184 ( orig = 185 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:24 Elapsed Time Refinement: 00:00:24 (hh:mm:ss) Elapsed Time -- Refining Family R=392 / 55 ( RS Elements: 718, Using 100 ): - numRounds = 4 - Consensus Length = 91 ( orig = 91 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=142 / 56 ( RS Elements: 707, Using 100 ): - numRounds = 6 - Consensus Length = 685 ( orig = 693 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:17 Elapsed Time Refinement: 00:00:18 (hh:mm:ss) Elapsed Time -- Refining Family R=103 / 57 ( RS Elements: 698, Using 100 ): - numRounds = 4 - Consensus Length = 56 ( orig = 56 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=847 / 58 ( RS Elements: 694, Using 100 ): - numRounds = 5 - Consensus Length = 163 ( orig = 166 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:14 (hh:mm:ss) Elapsed Time -- Refining Family R=263 / 59 ( RS Elements: 694, Using 100 ): - numRounds = 6 - Consensus Length = 647 ( orig = 648 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:21 Elapsed Time Refinement: 00:00:22 (hh:mm:ss) Elapsed Time -- Refining Family R=164 / 60 ( RS Elements: 684, Using 100 ): - numRounds = 4 - Consensus Length = 122 ( orig = 122 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=18 / 61 ( RS Elements: 682, Using 100 ): - numRounds = 5 - Consensus Length = 468 ( orig = 469 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:28 Elapsed Time Refinement: 00:00:28 (hh:mm:ss) Elapsed Time -- Refining Family R=1108 / 62 ( RS Elements: 673, Using 100 ): - numRounds = 4 - Consensus Length = 313 ( orig = 313 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:18 Elapsed Time Refinement: 00:00:18 (hh:mm:ss) Elapsed Time -- Refining Family R=463 / 63 ( RS Elements: 666, Using 100 ): - numRounds = 5 - Consensus Length = 135 ( orig = 136 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=1684 / 64 ( RS Elements: 659, Using 100 ): - numRounds = 5 - Consensus Length = 165 ( orig = 165 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=1070 / 65 ( RS Elements: 654, Using 100 ): - numRounds = 5 - Consensus Length = 130 ( orig = 130 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=366 / 66 ( RS Elements: 645, Using 100 ): - numRounds = 6 - Consensus Length = 244 ( orig = 247 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:21 Elapsed Time Refinement: 00:00:21 (hh:mm:ss) Elapsed Time -- Refining Family R=22 / 67 ( RS Elements: 637, Using 100 ): - numRounds = 5 - Consensus Length = 538 ( orig = 534 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:35 Elapsed Time Refinement: 00:00:35 (hh:mm:ss) Elapsed Time -- Refining Family R=411 / 68 ( RS Elements: 632, Using 100 ): - numRounds = 4 - Consensus Length = 65 ( orig = 65 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=1047 / 69 ( RS Elements: 622, Using 100 ): - numRounds = 4 - Consensus Length = 268 ( orig = 268 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:16 Elapsed Time Refinement: 00:00:16 (hh:mm:ss) Elapsed Time -- Refining Family R=726 / 70 ( RS Elements: 604, Using 100 ): - numRounds = 4 - Consensus Length = 50 ( orig = 50 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=1803 / 71 ( RS Elements: 601, Using 100 ): - numRounds = 4 - Consensus Length = 77 ( orig = 77 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=1723 / 72 ( RS Elements: 592, Using 100 ): - numRounds = 7 - Consensus Length = 199 ( orig = 197 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=402 / 73 ( RS Elements: 589, Using 100 ): - numRounds = 5 - Consensus Length = 943 ( orig = 945 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=48 / 74 ( RS Elements: 582, Using 100 ): - numRounds = 5 - Consensus Length = 446 ( orig = 446 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:28 Elapsed Time Refinement: 00:00:28 (hh:mm:ss) Elapsed Time -- Refining Family R=854 / 75 ( RS Elements: 582, Using 100 ): - numRounds = 8 - Consensus Length = 199 ( orig = 197 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time -- Refining Family R=290 / 76 ( RS Elements: 582, Using 100 ): - numRounds = 3 - Consensus Length = 73 ( orig = 73 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=38 / 77 ( RS Elements: 578, Using 100 ): - numRounds = 6 - Consensus Length = 472 ( orig = 470 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:33 Elapsed Time Refinement: 00:00:33 (hh:mm:ss) Elapsed Time -- Refining Family R=509 / 78 ( RS Elements: 567, Using 100 ): - numRounds = 6 - Consensus Length = 1097 ( orig = 1096 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time -- Refining Family R=32 / 79 ( RS Elements: 564, Using 100 ): - numRounds = 4 - Consensus Length = 98 ( orig = 98 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=599 / 80 ( RS Elements: 557, Using 100 ): - numRounds = 4 - Consensus Length = 86 ( orig = 86 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=1490 / 81 ( RS Elements: 551, Using 100 ): - numRounds = 4 - Consensus Length = 171 ( orig = 171 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=1948 / 82 ( RS Elements: 550, Using 100 ): - numRounds = 4 - Consensus Length = 116 ( orig = 116 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=1667 / 83 ( RS Elements: 545, Using 100 ): - numRounds = 4 - Consensus Length = 116 ( orig = 116 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=373 / 84 ( RS Elements: 534, Using 100 ): - numRounds = 4 - Consensus Length = 72 ( orig = 72 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=61 / 85 ( RS Elements: 533, Using 100 ): - numRounds = 5 - Consensus Length = 251 ( orig = 250 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:24 Elapsed Time Refinement: 00:00:24 (hh:mm:ss) Elapsed Time -- Refining Family R=717 / 86 ( RS Elements: 533, Using 100 ): - numRounds = 8 - Consensus Length = 265 ( orig = 268 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:15 Elapsed Time Refinement: 00:00:15 (hh:mm:ss) Elapsed Time -- Refining Family R=358 / 87 ( RS Elements: 522, Using 100 ): - numRounds = 4 - Consensus Length = 54 ( orig = 54 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=510 / 88 ( RS Elements: 515, Using 100 ): - numRounds = 3 - Consensus Length = 62 ( orig = 62 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=76 / 89 ( RS Elements: 514, Using 100 ): - numRounds = 4 - Consensus Length = 232 ( orig = 232 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:20 Elapsed Time Refinement: 00:00:20 (hh:mm:ss) Elapsed Time -- Refining Family R=29 / 90 ( RS Elements: 504, Using 100 ): - numRounds = 4 - Consensus Length = 197 ( orig = 197 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:14 Elapsed Time Refinement: 00:00:14 (hh:mm:ss) Elapsed Time -- Refining Family R=654 / 91 ( RS Elements: 503, Using 100 ): - numRounds = 5 - Consensus Length = 294 ( orig = 294 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=15 / 92 ( RS Elements: 502, Using 100 ): - numRounds = 4 - Consensus Length = 431 ( orig = 431 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:28 Elapsed Time Refinement: 00:00:28 (hh:mm:ss) Elapsed Time -- Refining Family R=617 / 93 ( RS Elements: 495, Using 100 ): - numRounds = 4 - Consensus Length = 104 ( orig = 104 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=1387 / 94 ( RS Elements: 493, Using 100 ): - numRounds = 4 - Consensus Length = 168 ( orig = 168 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=540 / 95 ( RS Elements: 483, Using 100 ): - numRounds = 5 - Consensus Length = 215 ( orig = 214 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:16 Elapsed Time Refinement: 00:00:16 (hh:mm:ss) Elapsed Time -- Refining Family R=116 / 96 ( RS Elements: 483, Using 100 ): - numRounds = 5 - Consensus Length = 1056 ( orig = 1056 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:21 Elapsed Time Refinement: 00:00:21 (hh:mm:ss) Elapsed Time -- Refining Family R=323 / 97 ( RS Elements: 476, Using 100 ): - numRounds = 4 - Consensus Length = 55 ( orig = 55 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=9 / 98 ( RS Elements: 469, Using 100 ): - numRounds = 4 - Consensus Length = 97 ( orig = 97 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=996 / 99 ( RS Elements: 455, Using 100 ): - numRounds = 4 - Consensus Length = 62 ( orig = 62 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=49 / 100 ( RS Elements: 455, Using 100 ): - numRounds = 5 - Consensus Length = 246 ( orig = 246 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:23 Elapsed Time Refinement: 00:00:23 (hh:mm:ss) Elapsed Time -- Refining Family R=798 / 101 ( RS Elements: 452, Using 100 ): - numRounds = 6 - Consensus Length = 240 ( orig = 241 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:14 Elapsed Time Refinement: 00:00:15 (hh:mm:ss) Elapsed Time -- Refining Family R=1609 / 102 ( RS Elements: 451, Using 100 ): - numRounds = 4 - Consensus Length = 78 ( orig = 78 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=354 / 103 ( RS Elements: 450, Using 100 ): - numRounds = 5 - Consensus Length = 176 ( orig = 176 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time -- Refining Family R=19 / 104 ( RS Elements: 449, Using 100 ): - numRounds = 4 - Consensus Length = 475 ( orig = 475 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:25 Elapsed Time Refinement: 00:00:25 (hh:mm:ss) Elapsed Time -- Refining Family R=24 / 105 ( RS Elements: 428, Using 100 ): - numRounds = 4 - Consensus Length = 459 ( orig = 459 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:25 Elapsed Time Refinement: 00:00:25 (hh:mm:ss) Elapsed Time -- Refining Family R=161 / 106 ( RS Elements: 422, Using 100 ): - numRounds = 5 - Consensus Length = 477 ( orig = 475 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:31 Elapsed Time Refinement: 00:00:31 (hh:mm:ss) Elapsed Time -- Refining Family R=963 / 107 ( RS Elements: 415, Using 100 ): - numRounds = 4 - Consensus Length = 59 ( orig = 59 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=40 / 108 ( RS Elements: 414, Using 100 ): - numRounds = 5 - Consensus Length = 209 ( orig = 208 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:21 Elapsed Time Refinement: 00:00:21 (hh:mm:ss) Elapsed Time -- Refining Family R=419 / 109 ( RS Elements: 403, Using 100 ): - numRounds = 4 - Consensus Length = 52 ( orig = 52 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=109 / 110 ( RS Elements: 400, Using 100 ): - numRounds = 5 - Consensus Length = 442 ( orig = 442 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:28 Elapsed Time Refinement: 00:00:28 (hh:mm:ss) Elapsed Time -- Refining Family R=1249 / 111 ( RS Elements: 400, Using 100 ): - numRounds = 4 - Consensus Length = 83 ( orig = 83 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 7 ( orig = 7 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=41 / 112 ( RS Elements: 389, Using 100 ): - numRounds = 4 - Consensus Length = 395 ( orig = 395 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:23 Elapsed Time Refinement: 00:00:23 (hh:mm:ss) Elapsed Time -- Refining Family R=475 / 113 ( RS Elements: 389, Using 100 ): - numRounds = 4 - Consensus Length = 54 ( orig = 54 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=1198 / 114 ( RS Elements: 388, Using 100 ): - numRounds = 4 - Consensus Length = 55 ( orig = 55 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=327 / 115 ( RS Elements: 384, Using 100 ): - numRounds = 4 - Consensus Length = 160 ( orig = 160 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=45 / 116 ( RS Elements: 363, Using 100 ): - numRounds = 5 - Consensus Length = 251 ( orig = 251 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:25 Elapsed Time Refinement: 00:00:25 (hh:mm:ss) Elapsed Time -- Refining Family R=34 / 117 ( RS Elements: 360, Using 100 ): - numRounds = 4 - Consensus Length = 85 ( orig = 85 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=603 / 118 ( RS Elements: 356, Using 100 ): - numRounds = 4 - Consensus Length = 129 ( orig = 129 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=1479 / 119 ( RS Elements: 352, Using 100 ): - numRounds = 6 - Consensus Length = 351 ( orig = 358 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:1:6 Elapsed Time Refinement: 00:01:06 (hh:mm:ss) Elapsed Time -- Refining Family R=482 / 120 ( RS Elements: 350, Using 100 ): - numRounds = 4 - Consensus Length = 245 ( orig = 245 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:15 Elapsed Time Refinement: 00:00:16 (hh:mm:ss) Elapsed Time -- Refining Family R=36 / 121 ( RS Elements: 348, Using 100 ): - numRounds = 4 - Consensus Length = 462 ( orig = 462 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:25 Elapsed Time Refinement: 00:00:25 (hh:mm:ss) Elapsed Time -- Refining Family R=294 / 122 ( RS Elements: 344, Using 100 ): - numRounds = 5 - Consensus Length = 183 ( orig = 183 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time -- Refining Family R=663 / 123 ( RS Elements: 342, Using 100 ): - numRounds = 4 - Consensus Length = 119 ( orig = 119 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=1653 / 124 ( RS Elements: 335, Using 100 ): - numRounds = 4 - Consensus Length = 120 ( orig = 120 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=25 / 125 ( RS Elements: 327, Using 100 ): - numRounds = 4 - Consensus Length = 472 ( orig = 472 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:24 Elapsed Time Refinement: 00:00:25 (hh:mm:ss) Elapsed Time -- Refining Family R=709 / 126 ( RS Elements: 325, Using 100 ): - numRounds = 5 - Consensus Length = 672 ( orig = 676 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=1274 / 127 ( RS Elements: 323, Using 100 ): - numRounds = 4 - Consensus Length = 134 ( orig = 134 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=33 / 128 ( RS Elements: 323, Using 100 ): - numRounds = 4 - Consensus Length = 62 ( orig = 62 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=648 / 129 ( RS Elements: 322, Using 100 ): - numRounds = 4 - Consensus Length = 65 ( orig = 65 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=248 / 130 ( RS Elements: 322, Using 100 ): - numRounds = 5 - Consensus Length = 211 ( orig = 214 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=199 / 131 ( RS Elements: 322, Using 100 ): - numRounds = 4 - Consensus Length = 80 ( orig = 80 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=468 / 132 ( RS Elements: 318, Using 100 ): - numRounds = 5 - Consensus Length = 548 ( orig = 548 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=1349 / 133 ( RS Elements: 315, Using 100 ): - numRounds = 4 - Consensus Length = 64 ( orig = 64 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=933 / 134 ( RS Elements: 314, Using 100 ): - numRounds = 4 - Consensus Length = 95 ( orig = 95 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=598 / 135 ( RS Elements: 313, Using 100 ): - numRounds = 4 - Consensus Length = 91 ( orig = 91 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=221 / 136 ( RS Elements: 310, Using 100 ): - numRounds = 8 - Consensus Length = 736 ( orig = 763 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:38 Elapsed Time Refinement: 00:00:38 (hh:mm:ss) Elapsed Time -- Refining Family R=1201 / 137 ( RS Elements: 310, Using 100 ): - numRounds = 5 - Consensus Length = 96 ( orig = 96 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=185 / 138 ( RS Elements: 298, Using 100 ): - numRounds = 5 - Consensus Length = 97 ( orig = 96 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=253 / 139 ( RS Elements: 295, Using 100 ): - numRounds = 4 - Consensus Length = 165 ( orig = 160 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time -- Refining Family R=55 / 140 ( RS Elements: 290, Using 100 ): - numRounds = 4 - Consensus Length = 171 ( orig = 171 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=536 / 141 ( RS Elements: 285, Using 100 ): - numRounds = 5 - Consensus Length = 511 ( orig = 507 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:20 Elapsed Time Refinement: 00:00:20 (hh:mm:ss) Elapsed Time -- Refining Family R=685 / 142 ( RS Elements: 282, Using 100 ): - numRounds = 4 - Consensus Length = 156 ( orig = 156 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 10 ( orig = 12 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=57 / 143 ( RS Elements: 281, Using 100 ): - numRounds = 5 - Consensus Length = 148 ( orig = 149 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time -- Refining Family R=735 / 144 ( RS Elements: 273, Using 100 ): - numRounds = 7 - Consensus Length = 159 ( orig = 161 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time -- Refining Family R=792 / 145 ( RS Elements: 271, Using 100 ): - numRounds = 6 - Consensus Length = 304 ( orig = 303 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=226 / 146 ( RS Elements: 270, Using 100 ): - numRounds = 5 - Consensus Length = 167 ( orig = 167 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:18 Elapsed Time Refinement: 00:00:18 (hh:mm:ss) Elapsed Time -- Refining Family R=986 / 147 ( RS Elements: 268, Using 100 ): - numRounds = 8 - Consensus Length = 452 ( orig = 449 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:14 (hh:mm:ss) Elapsed Time -- Refining Family R=267 / 148 ( RS Elements: 260, Using 100 ): - numRounds = 4 - Consensus Length = 67 ( orig = 67 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=365 / 149 ( RS Elements: 259, Using 100 ): - numRounds = 4 - Consensus Length = 79 ( orig = 79 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=124 / 150 ( RS Elements: 257, Using 100 ): - numRounds = 6 - Consensus Length = 246 ( orig = 247 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:21 Elapsed Time Refinement: 00:00:21 (hh:mm:ss) Elapsed Time -- Refining Family R=390 / 151 ( RS Elements: 257, Using 100 ): - numRounds = 4 - Consensus Length = 84 ( orig = 84 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=718 / 152 ( RS Elements: 257, Using 100 ): - numRounds = 4 - Consensus Length = 51 ( orig = 51 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=77 / 153 ( RS Elements: 249, Using 100 ): - numRounds = 5 - Consensus Length = 262 ( orig = 262 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=137 / 154 ( RS Elements: 249, Using 100 ): - numRounds = 4 - Consensus Length = 261 ( orig = 261 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:15 Elapsed Time Refinement: 00:00:15 (hh:mm:ss) Elapsed Time -- Refining Family R=71 / 155 ( RS Elements: 245, Using 100 ): - numRounds = 4 - Consensus Length = 246 ( orig = 246 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:14 Elapsed Time Refinement: 00:00:14 (hh:mm:ss) Elapsed Time -- Refining Family R=578 / 156 ( RS Elements: 239, Using 100 ): - numRounds = 4 - Consensus Length = 295 ( orig = 295 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:14 Elapsed Time Refinement: 00:00:14 (hh:mm:ss) Elapsed Time -- Refining Family R=80 / 157 ( RS Elements: 238, Using 100 ): - numRounds = 6 - Consensus Length = 87 ( orig = 87 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=1176 / 158 ( RS Elements: 232, Using 100 ): - numRounds = 4 - Consensus Length = 60 ( orig = 60 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=111 / 159 ( RS Elements: 231, Using 100 ): - numRounds = 5 - Consensus Length = 221 ( orig = 220 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:16 Elapsed Time Refinement: 00:00:16 (hh:mm:ss) Elapsed Time -- Refining Family R=1453 / 160 ( RS Elements: 230, Using 100 ): - numRounds = 4 - Consensus Length = 490 ( orig = 490 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=645 / 161 ( RS Elements: 229, Using 100 ): - numRounds = 4 - Consensus Length = 287 ( orig = 287 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time -- Refining Family R=404 / 162 ( RS Elements: 228, Using 100 ): - numRounds = 4 - Consensus Length = 103 ( orig = 103 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=37 / 163 ( RS Elements: 227, Using 100 ): - numRounds = 4 - Consensus Length = 478 ( orig = 478 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:29 Elapsed Time Refinement: 00:00:29 (hh:mm:ss) Elapsed Time -- Refining Family R=176 / 164 ( RS Elements: 225, Using 100 ): - numRounds = 6 - Consensus Length = 274 ( orig = 272 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:14 Elapsed Time Refinement: 00:00:14 (hh:mm:ss) Elapsed Time -- Refining Family R=379 / 165 ( RS Elements: 225, Using 100 ): - numRounds = 5 - Consensus Length = 374 ( orig = 374 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:14 Elapsed Time Refinement: 00:00:15 (hh:mm:ss) Elapsed Time -- Refining Family R=308 / 166 ( RS Elements: 222, Using 100 ): - numRounds = 6 - Consensus Length = 190 ( orig = 190 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:20 Elapsed Time Refinement: 00:00:20 (hh:mm:ss) Elapsed Time -- Refining Family R=193 / 167 ( RS Elements: 221, Using 100 ): - numRounds = 5 - Consensus Length = 311 ( orig = 311 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:26 Elapsed Time Refinement: 00:00:26 (hh:mm:ss) Elapsed Time -- Refining Family R=958 / 168 ( RS Elements: 219, Using 100 ): - numRounds = 6 - Consensus Length = 327 ( orig = 316 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=466 / 169 ( RS Elements: 214, Using 100 ): - numRounds = 4 - Consensus Length = 312 ( orig = 312 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=247 / 170 ( RS Elements: 211, Using 100 ): - numRounds = 8 - Consensus Length = 641 ( orig = 639 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:1:5 Elapsed Time Refinement: 00:01:05 (hh:mm:ss) Elapsed Time -- Refining Family R=100 / 171 ( RS Elements: 208, Using 100 ): - numRounds = 4 - Consensus Length = 78 ( orig = 78 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=122 / 172 ( RS Elements: 208, Using 100 ): - numRounds = 5 - Consensus Length = 126 ( orig = 127 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=332 / 173 ( RS Elements: 206, Using 100 ): - numRounds = 4 - Consensus Length = 187 ( orig = 187 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=118 / 174 ( RS Elements: 205, Using 100 ): - numRounds = 7 - Consensus Length = 2264 ( orig = 2261 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:40 Elapsed Time Refinement: 00:00:40 (hh:mm:ss) Elapsed Time -- Refining Family R=672 / 175 ( RS Elements: 204, Using 100 ): - numRounds = 4 - Consensus Length = 90 ( orig = 90 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:14 Elapsed Time Refinement: 00:00:15 (hh:mm:ss) Elapsed Time -- Refining Family R=72 / 176 ( RS Elements: 201, Using 100 ): - numRounds = 7 - Consensus Length = 659 ( orig = 658 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:25 Elapsed Time Refinement: 00:00:26 (hh:mm:ss) Elapsed Time -- Refining Family R=93 / 177 ( RS Elements: 198, Using 100 ): - numRounds = 5 - Consensus Length = 1137 ( orig = 1138 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:18 Elapsed Time Refinement: 00:00:18 (hh:mm:ss) Elapsed Time -- Refining Family R=780 / 178 ( RS Elements: 195, Using 100 ): - numRounds = 6 - Consensus Length = 296 ( orig = 296 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=222 / 179 ( RS Elements: 195, Using 100 ): - numRounds = 6 - Consensus Length = 210 ( orig = 211 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=126 / 180 ( RS Elements: 195, Using 100 ): - numRounds = 4 - Consensus Length = 144 ( orig = 144 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=128 / 181 ( RS Elements: 195, Using 100 ): - numRounds = 4 - Consensus Length = 383 ( orig = 383 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:20 Elapsed Time Refinement: 00:00:20 (hh:mm:ss) Elapsed Time -- Refining Family R=212 / 182 ( RS Elements: 192, Using 100 ): - numRounds = 5 - Consensus Length = 483 ( orig = 483 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=347 / 183 ( RS Elements: 191, Using 100 ): - numRounds = 5 - Consensus Length = 553 ( orig = 553 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=1951 / 184 ( RS Elements: 187, Using 100 ): - numRounds = 5 - Consensus Length = 110 ( orig = 111 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=1345 / 185 ( RS Elements: 187, Using 100 ): - numRounds = 5 - Consensus Length = 120 ( orig = 120 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=209 / 186 ( RS Elements: 185, Using 100 ): - numRounds = 6 - Consensus Length = 431 ( orig = 431 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:20 Elapsed Time Refinement: 00:00:20 (hh:mm:ss) Elapsed Time -- Refining Family R=84 / 187 ( RS Elements: 181, Using 100 ): - numRounds = 5 - Consensus Length = 979 ( orig = 978 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:26 Elapsed Time Refinement: 00:00:26 (hh:mm:ss) Elapsed Time -- Refining Family R=748 / 188 ( RS Elements: 181, Using 100 ): - numRounds = 6 - Consensus Length = 544 ( orig = 544 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=63 / 189 ( RS Elements: 180, Using 100 ): - numRounds = 4 - Consensus Length = 66 ( orig = 66 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=534 / 190 ( RS Elements: 178, Using 100 ): - numRounds = 4 - Consensus Length = 74 ( orig = 74 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=380 / 191 ( RS Elements: 176, Using 100 ): - numRounds = 4 - Consensus Length = 51 ( orig = 51 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=166 / 192 ( RS Elements: 176, Using 100 ): - numRounds = 5 - Consensus Length = 74 ( orig = 74 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=423 / 193 ( RS Elements: 176, Using 100 ): - numRounds = 6 - Consensus Length = 174 ( orig = 174 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 5 ) Build Consensus: 0:0:14 Elapsed Time Refinement: 00:00:14 (hh:mm:ss) Elapsed Time -- Refining Family R=120 / 194 ( RS Elements: 174, Using 100 ): - numRounds = 5 - Consensus Length = 1941 ( orig = 1945 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 69 ( orig = 69 ) Build Consensus: 0:0:14 Elapsed Time Refinement: 00:00:14 (hh:mm:ss) Elapsed Time -- Refining Family R=1118 / 195 ( RS Elements: 172, Using 100 ): - numRounds = 5 - Consensus Length = 121 ( orig = 121 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 3 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=88 / 196 ( RS Elements: 169, Using 100 ): - numRounds = 5 - Consensus Length = 69 ( orig = 69 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=269 / 197 ( RS Elements: 169, Using 100 ): - numRounds = 4 - Consensus Length = 199 ( orig = 199 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=202 / 198 ( RS Elements: 168, Using 100 ): - numRounds = 4 - Consensus Length = 129 ( orig = 129 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=107 / 199 ( RS Elements: 168, Using 100 ): - numRounds = 5 - Consensus Length = 354 ( orig = 354 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:16 Elapsed Time Refinement: 00:00:16 (hh:mm:ss) Elapsed Time -- Refining Family R=68 / 200 ( RS Elements: 167, Using 100 ): - numRounds = 5 - Consensus Length = 701 ( orig = 699 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:21 Elapsed Time Refinement: 00:00:21 (hh:mm:ss) Elapsed Time -- Refining Family R=125 / 201 ( RS Elements: 166, Using 100 ): - numRounds = 5 - Consensus Length = 126 ( orig = 127 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=641 / 202 ( RS Elements: 166, Using 100 ): - numRounds = 6 - Consensus Length = 171 ( orig = 171 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time -- Refining Family R=130 / 203 ( RS Elements: 165, Using 100 ): - numRounds = 4 - Consensus Length = 89 ( orig = 89 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=389 / 204 ( RS Elements: 165, Using 100 ): - numRounds = 5 - Consensus Length = 708 ( orig = 712 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=79 / 205 ( RS Elements: 165, Using 100 ): - numRounds = 4 - Consensus Length = 56 ( orig = 56 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=169 / 206 ( RS Elements: 164, Using 100 ): - numRounds = 6 - Consensus Length = 653 ( orig = 651 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:20 Elapsed Time Refinement: 00:00:20 (hh:mm:ss) Elapsed Time -- Refining Family R=1248 / 207 ( RS Elements: 163, Using 100 ): - numRounds = 6 - Consensus Length = 175 ( orig = 173 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=198 / 208 ( RS Elements: 163, Using 100 ): - numRounds = 6 - Consensus Length = 1888 ( orig = 1885 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:15 Elapsed Time Refinement: 00:00:16 (hh:mm:ss) Elapsed Time -- Refining Family R=745 / 209 ( RS Elements: 162, Using 100 ): - numRounds = 5 - Consensus Length = 322 ( orig = 320 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=1731 / 210 ( RS Elements: 161, Using 100 ): - numRounds = 4 - Consensus Length = 81 ( orig = 81 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=517 / 211 ( RS Elements: 159, Using 100 ): - numRounds = 5 - Consensus Length = 192 ( orig = 192 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=1037 / 212 ( RS Elements: 158, Using 100 ): - numRounds = 4 - Consensus Length = 57 ( orig = 57 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 4 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=501 / 213 ( RS Elements: 157, Using 100 ): - numRounds = 5 - Consensus Length = 457 ( orig = 455 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=713 / 214 ( RS Elements: 157, Using 100 ): - numRounds = 5 - Consensus Length = 214 ( orig = 214 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=174 / 215 ( RS Elements: 156, Using 100 ): - numRounds = 4 - Consensus Length = 81 ( orig = 81 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=1639 / 216 ( RS Elements: 155, Using 100 ): - numRounds = 9 - Consensus Length = 201 ( orig = 202 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=751 / 217 ( RS Elements: 154, Using 100 ): - numRounds = 4 - Consensus Length = 165 ( orig = 165 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=476 / 218 ( RS Elements: 153, Using 100 ): - numRounds = 5 - Consensus Length = 99 ( orig = 99 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 10 ( orig = 10 ) Build Consensus: 0:0:14 Elapsed Time Refinement: 00:00:14 (hh:mm:ss) Elapsed Time -- Refining Family R=196 / 219 ( RS Elements: 151, Using 100 ): - numRounds = 4 - Consensus Length = 134 ( orig = 134 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=1952 / 220 ( RS Elements: 150, Using 100 ): - numRounds = 4 - Consensus Length = 76 ( orig = 76 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=101 / 221 ( RS Elements: 150, Using 100 ): - numRounds = 5 - Consensus Length = 242 ( orig = 242 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:14 Elapsed Time Refinement: 00:00:14 (hh:mm:ss) Elapsed Time -- Refining Family R=575 / 222 ( RS Elements: 148, Using 100 ): - numRounds = 4 - Consensus Length = 243 ( orig = 243 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:15 Elapsed Time Refinement: 00:00:15 (hh:mm:ss) Elapsed Time -- Refining Family R=1534 / 223 ( RS Elements: 148, Using 100 ): - numRounds = 4 - Consensus Length = 57 ( orig = 57 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=90 / 224 ( RS Elements: 147, Using 100 ): - numRounds = 4 - Consensus Length = 416 ( orig = 416 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:19 Elapsed Time Refinement: 00:00:19 (hh:mm:ss) Elapsed Time -- Refining Family R=830 / 225 ( RS Elements: 147, Using 100 ): - numRounds = 4 - Consensus Length = 161 ( orig = 161 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=143 / 226 ( RS Elements: 144, Using 100 ): - numRounds = 4 - Consensus Length = 121 ( orig = 121 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=1161 / 227 ( RS Elements: 144, Using 100 ): - numRounds = 5 - Consensus Length = 388 ( orig = 388 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=230 / 228 ( RS Elements: 143, Using 100 ): - numRounds = 5 - Consensus Length = 159 ( orig = 159 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=973 / 229 ( RS Elements: 142, Using 100 ): - numRounds = 6 - Consensus Length = 857 ( orig = 857 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=96 / 230 ( RS Elements: 142, Using 100 ): - numRounds = 4 - Consensus Length = 669 ( orig = 667 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:19 Elapsed Time Refinement: 00:00:19 (hh:mm:ss) Elapsed Time -- Refining Family R=439 / 231 ( RS Elements: 141, Using 100 ): - numRounds = 5 - Consensus Length = 125 ( orig = 125 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=436 / 232 ( RS Elements: 141, Using 100 ): - numRounds = 4 - Consensus Length = 61 ( orig = 61 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=649 / 233 ( RS Elements: 140, Using 100 ): - numRounds = 7 - Consensus Length = 365 ( orig = 359 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:15 Elapsed Time Refinement: 00:00:15 (hh:mm:ss) Elapsed Time -- Refining Family R=1029 / 234 ( RS Elements: 139, Using 100 ): - numRounds = 4 - Consensus Length = 63 ( orig = 63 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=660 / 235 ( RS Elements: 139, Using 100 ): - numRounds = 5 - Consensus Length = 268 ( orig = 268 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=525 / 236 ( RS Elements: 139, Using 100 ): - numRounds = 4 - Consensus Length = 77 ( orig = 77 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=383 / 237 ( RS Elements: 138, Using 100 ): - numRounds = 4 - Consensus Length = 52 ( orig = 52 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=92 / 238 ( RS Elements: 138, Using 100 ): - numRounds = 4 - Consensus Length = 55 ( orig = 55 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=394 / 239 ( RS Elements: 138, Using 100 ): - numRounds = 4 - Consensus Length = 101 ( orig = 101 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=206 / 240 ( RS Elements: 138, Using 100 ): - numRounds = 6 - Consensus Length = 228 ( orig = 225 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:15 Elapsed Time Refinement: 00:00:15 (hh:mm:ss) Elapsed Time -- Refining Family R=127 / 241 ( RS Elements: 137, Using 100 ): - numRounds = 5 - Consensus Length = 156 ( orig = 156 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=87 / 242 ( RS Elements: 136, Using 100 ): - numRounds = 5 - Consensus Length = 661 ( orig = 661 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:15 Elapsed Time Refinement: 00:00:15 (hh:mm:ss) Elapsed Time -- Refining Family R=160 / 243 ( RS Elements: 136, Using 100 ): - numRounds = 5 - Consensus Length = 213 ( orig = 218 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:16 Elapsed Time Refinement: 00:00:16 (hh:mm:ss) Elapsed Time -- Refining Family R=711 / 244 ( RS Elements: 134, Using 100 ): - numRounds = 11 - Consensus Length = 1393 ( orig = 1393 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 0 ) Build Consensus: 0:0:37 Elapsed Time Refinement: 00:00:37 (hh:mm:ss) Elapsed Time -- Refining Family R=298 / 245 ( RS Elements: 133, Using 100 ): - numRounds = 5 - Consensus Length = 791 ( orig = 786 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time -- Refining Family R=1763 / 246 ( RS Elements: 132, Using 100 ): - numRounds = 4 - Consensus Length = 56 ( orig = 56 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=94 / 247 ( RS Elements: 132, Using 100 ): - numRounds = 4 - Consensus Length = 80 ( orig = 80 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=50 / 248 ( RS Elements: 131, Using 100 ): - numRounds = 6 - Consensus Length = 498 ( orig = 508 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:47 Elapsed Time Refinement: 00:00:47 (hh:mm:ss) Elapsed Time -- Refining Family R=1938 / 249 ( RS Elements: 131, Using 100 ): - numRounds = 4 - Consensus Length = 78 ( orig = 78 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 4 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=817 / 250 ( RS Elements: 130, Using 100 ): - numRounds = 7 - Consensus Length = 325 ( orig = 323 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:25 Elapsed Time Refinement: 00:00:25 (hh:mm:ss) Elapsed Time -- Refining Family R=191 / 251 ( RS Elements: 129, Using 100 ): - numRounds = 5 - Consensus Length = 722 ( orig = 723 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:19 Elapsed Time Refinement: 00:00:19 (hh:mm:ss) Elapsed Time -- Refining Family R=349 / 252 ( RS Elements: 129, Using 100 ): - numRounds = 4 - Consensus Length = 64 ( orig = 64 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=1221 / 253 ( RS Elements: 128, Using 100 ): - numRounds = 4 - Consensus Length = 57 ( orig = 57 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=123 / 254 ( RS Elements: 128, Using 100 ): - numRounds = 4 - Consensus Length = 63 ( orig = 63 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=668 / 255 ( RS Elements: 128, Using 100 ): - numRounds = 6 - Consensus Length = 191 ( orig = 192 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 6 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=131 / 256 ( RS Elements: 128, Using 100 ): - numRounds = 5 - Consensus Length = 387 ( orig = 387 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:15 Elapsed Time Refinement: 00:00:15 (hh:mm:ss) Elapsed Time -- Refining Family R=699 / 257 ( RS Elements: 127, Using 100 ): - numRounds = 7 - Consensus Length = 934 ( orig = 935 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:29 Elapsed Time Refinement: 00:00:29 (hh:mm:ss) Elapsed Time -- Refining Family R=763 / 258 ( RS Elements: 127, Using 100 ): - numRounds = 5 - Consensus Length = 187 ( orig = 188 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=262 / 259 ( RS Elements: 126, Using 100 ): - numRounds = 4 - Consensus Length = 106 ( orig = 106 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=328 / 260 ( RS Elements: 126, Using 100 ): - numRounds = 6 - Consensus Length = 202 ( orig = 201 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:15 Elapsed Time Refinement: 00:00:15 (hh:mm:ss) Elapsed Time -- Refining Family R=237 / 261 ( RS Elements: 125, Using 100 ): - numRounds = 5 - Consensus Length = 162 ( orig = 161 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=147 / 262 ( RS Elements: 125, Using 100 ): - numRounds = 7 - Consensus Length = 1479 ( orig = 1480 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:32 Elapsed Time Refinement: 00:00:32 (hh:mm:ss) Elapsed Time -- Refining Family R=1017 / 263 ( RS Elements: 125, Using 100 ): - numRounds = 4 - Consensus Length = 235 ( orig = 235 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:14 (hh:mm:ss) Elapsed Time -- Refining Family R=138 / 264 ( RS Elements: 124, Using 100 ): - numRounds = 5 - Consensus Length = 123 ( orig = 123 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:14 (hh:mm:ss) Elapsed Time -- Refining Family R=132 / 265 ( RS Elements: 122, Using 100 ): - numRounds = 5 - Consensus Length = 1654 ( orig = 1652 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:16 Elapsed Time Refinement: 00:00:16 (hh:mm:ss) Elapsed Time -- Refining Family R=228 / 266 ( RS Elements: 122, Using 100 ): - numRounds = 4 - Consensus Length = 353 ( orig = 353 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=78 / 267 ( RS Elements: 122, Using 100 ): - numRounds = 6 - Consensus Length = 205 ( orig = 205 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=156 / 268 ( RS Elements: 121, Using 100 ): - numRounds = 5 - Consensus Length = 1122 ( orig = 1119 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:23 Elapsed Time Refinement: 00:00:24 (hh:mm:ss) Elapsed Time -- Refining Family R=65 / 269 ( RS Elements: 121, Using 100 ): - numRounds = 4 - Consensus Length = 388 ( orig = 388 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=197 / 270 ( RS Elements: 121, Using 100 ): - numRounds = 4 - Consensus Length = 267 ( orig = 267 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=181 / 271 ( RS Elements: 120, Using 100 ): - numRounds = 4 - Consensus Length = 172 ( orig = 172 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=85 / 272 ( RS Elements: 120, Using 100 ): - numRounds = 6 - Consensus Length = 237 ( orig = 236 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:16 Elapsed Time Refinement: 00:00:16 (hh:mm:ss) Elapsed Time -- Refining Family R=178 / 273 ( RS Elements: 119, Using 100 ): - numRounds = 7 - Consensus Length = 1797 ( orig = 1797 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:38 Elapsed Time Refinement: 00:00:39 (hh:mm:ss) Elapsed Time -- Refining Family R=251 / 274 ( RS Elements: 119, Using 100 ): - numRounds = 4 - Consensus Length = 214 ( orig = 214 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=574 / 275 ( RS Elements: 118, Using 100 ): - numRounds = 4 - Consensus Length = 371 ( orig = 371 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=1304 / 276 ( RS Elements: 118, Using 100 ): - numRounds = 11 - Consensus Length = 1115 ( orig = 1115 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:36 Elapsed Time Refinement: 00:00:36 (hh:mm:ss) Elapsed Time -- Refining Family R=108 / 277 ( RS Elements: 118, Using 100 ): - numRounds = 4 - Consensus Length = 165 ( orig = 165 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=208 / 278 ( RS Elements: 117, Using 100 ): - numRounds = 5 - Consensus Length = 620 ( orig = 620 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time -- Refining Family R=1402 / 279 ( RS Elements: 117, Using 100 ): - numRounds = 4 - Consensus Length = 212 ( orig = 212 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=104 / 280 ( RS Elements: 115, Using 100 ): - numRounds = 9 - Consensus Length = 795 ( orig = 826 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:33 Elapsed Time Refinement: 00:00:33 (hh:mm:ss) Elapsed Time -- Refining Family R=150 / 281 ( RS Elements: 113, Using 100 ): - numRounds = 4 - Consensus Length = 189 ( orig = 189 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=336 / 282 ( RS Elements: 113, Using 100 ): - numRounds = 4 - Consensus Length = 55 ( orig = 55 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=1043 / 283 ( RS Elements: 112, Using 100 ): - numRounds = 7 - Consensus Length = 194 ( orig = 194 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 5 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=141 / 284 ( RS Elements: 109, Using 100 ): - numRounds = 4 - Consensus Length = 320 ( orig = 320 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=1457 / 285 ( RS Elements: 109, Using 100 ): - numRounds = 4 - Consensus Length = 57 ( orig = 57 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=183 / 286 ( RS Elements: 107, Using 100 ): - numRounds = 4 - Consensus Length = 68 ( orig = 68 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=289 / 287 ( RS Elements: 107, Using 100 ): - numRounds = 6 - Consensus Length = 179 ( orig = 176 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=99 / 288 ( RS Elements: 107, Using 100 ): - numRounds = 5 - Consensus Length = 1094 ( orig = 1095 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:22 Elapsed Time Refinement: 00:00:22 (hh:mm:ss) Elapsed Time -- Refining Family R=233 / 289 ( RS Elements: 106, Using 100 ): - numRounds = 7 - Consensus Length = 3004 ( orig = 3004 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:38 Elapsed Time Refinement: 00:00:38 (hh:mm:ss) Elapsed Time -- Refining Family R=442 / 290 ( RS Elements: 106, Using 100 ): - numRounds = 5 - Consensus Length = 111 ( orig = 111 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=330 / 291 ( RS Elements: 106, Using 100 ): - numRounds = 6 - Consensus Length = 144 ( orig = 150 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=252 / 292 ( RS Elements: 105, Using 100 ): - numRounds = 6 - Consensus Length = 164 ( orig = 166 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=521 / 293 ( RS Elements: 105, Using 100 ): - numRounds = 5 - Consensus Length = 1089 ( orig = 1088 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:14 Elapsed Time Refinement: 00:00:14 (hh:mm:ss) Elapsed Time -- Refining Family R=159 / 294 ( RS Elements: 105, Using 100 ): - numRounds = 7 - Consensus Length = 245 ( orig = 245 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=324 / 295 ( RS Elements: 105, Using 100 ): - numRounds = 4 - Consensus Length = 220 ( orig = 220 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 5 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=522 / 296 ( RS Elements: 105, Using 100 ): - numRounds = 4 - Consensus Length = 136 ( orig = 136 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=106 / 297 ( RS Elements: 105, Using 100 ): - numRounds = 4 - Consensus Length = 66 ( orig = 66 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=229 / 298 ( RS Elements: 104, Using 100 ): - numRounds = 6 - Consensus Length = 157 ( orig = 157 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=799 / 299 ( RS Elements: 104, Using 100 ): - numRounds = 4 - Consensus Length = 182 ( orig = 182 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time -- Refining Family R=102 / 300 ( RS Elements: 103, Using 100 ): - numRounds = 4 - Consensus Length = 79 ( orig = 79 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=1137 / 301 ( RS Elements: 102, Using 100 ): - numRounds = 5 - Consensus Length = 100 ( orig = 100 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=83 / 302 ( RS Elements: 102, Using 100 ): - numRounds = 5 - Consensus Length = 466 ( orig = 466 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time -- Refining Family R=1979 / 303 ( RS Elements: 102, Using 100 ): - numRounds = 4 - Consensus Length = 121 ( orig = 121 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=435 / 304 ( RS Elements: 102, Using 100 ): - numRounds = 5 - Consensus Length = 222 ( orig = 222 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=426 / 305 ( RS Elements: 100, Using 100 ): - numRounds = 4 - Consensus Length = 82 ( orig = 82 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=241 / 306 ( RS Elements: 100, Using 100 ): - numRounds = 5 - Consensus Length = 733 ( orig = 733 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time -- Refining Family R=81 / 307 ( RS Elements: 100, Using 100 ): - numRounds = 5 - Consensus Length = 626 ( orig = 625 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 6 ) Build Consensus: 0:0:14 Elapsed Time Refinement: 00:00:14 (hh:mm:ss) Elapsed Time -- Refining Family R=82 / 308 ( RS Elements: 100, Using 100 ): - numRounds = 4 - Consensus Length = 669 ( orig = 669 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:15 Elapsed Time Refinement: 00:00:15 (hh:mm:ss) Elapsed Time -- Refining Family R=149 / 309 ( RS Elements: 100, Using 100 ): - numRounds = 5 - Consensus Length = 345 ( orig = 345 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time -- Refining Family R=105 / 310 ( RS Elements: 99, Using 99 ): - numRounds = 4 - Consensus Length = 163 ( orig = 163 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=818 / 311 ( RS Elements: 99, Using 99 ): - numRounds = 4 - Consensus Length = 122 ( orig = 122 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=505 / 312 ( RS Elements: 99, Using 99 ): - numRounds = 5 - Consensus Length = 676 ( orig = 676 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:17 Elapsed Time Refinement: 00:00:17 (hh:mm:ss) Elapsed Time -- Refining Family R=1438 / 313 ( RS Elements: 98, Using 98 ): - numRounds = 4 - Consensus Length = 57 ( orig = 57 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=98 / 314 ( RS Elements: 98, Using 98 ): - numRounds = 4 - Consensus Length = 89 ( orig = 89 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=152 / 315 ( RS Elements: 98, Using 98 ): - numRounds = 5 - Consensus Length = 388 ( orig = 387 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:14 Elapsed Time Refinement: 00:00:14 (hh:mm:ss) Elapsed Time -- Refining Family R=75 / 316 ( RS Elements: 98, Using 98 ): - numRounds = 4 - Consensus Length = 218 ( orig = 218 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=610 / 317 ( RS Elements: 97, Using 97 ): - numRounds = 5 - Consensus Length = 180 ( orig = 179 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=239 / 318 ( RS Elements: 97, Using 97 ): - numRounds = 6 - Consensus Length = 223 ( orig = 223 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=319 / 319 ( RS Elements: 97, Using 97 ): - numRounds = 5 - Consensus Length = 257 ( orig = 260 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=655 / 320 ( RS Elements: 95, Using 95 ): - numRounds = 4 - Consensus Length = 81 ( orig = 81 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=492 / 321 ( RS Elements: 95, Using 95 ): - numRounds = 4 - Consensus Length = 76 ( orig = 76 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=158 / 322 ( RS Elements: 95, Using 95 ): - numRounds = 6 - Consensus Length = 227 ( orig = 225 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=459 / 323 ( RS Elements: 94, Using 94 ): - numRounds = 4 - Consensus Length = 56 ( orig = 56 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=215 / 324 ( RS Elements: 93, Using 93 ): - numRounds = 4 - Consensus Length = 125 ( orig = 123 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=1464 / 325 ( RS Elements: 93, Using 93 ): - numRounds = 4 - Consensus Length = 72 ( orig = 72 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=260 / 326 ( RS Elements: 93, Using 93 ): - numRounds = 4 - Consensus Length = 183 ( orig = 182 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=579 / 327 ( RS Elements: 93, Using 93 ): - numRounds = 6 - Consensus Length = 615 ( orig = 615 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=153 / 328 ( RS Elements: 93, Using 93 ): - numRounds = 4 - Consensus Length = 677 ( orig = 677 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=148 / 329 ( RS Elements: 91, Using 91 ): - numRounds = 5 - Consensus Length = 68 ( orig = 68 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=464 / 330 ( RS Elements: 91, Using 91 ): - numRounds = 5 - Consensus Length = 553 ( orig = 553 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=235 / 331 ( RS Elements: 91, Using 91 ): - numRounds = 11 - Consensus Length = 659 ( orig = 644 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 5 ) Build Consensus: 0:0:34 Elapsed Time Refinement: 00:00:34 (hh:mm:ss) Elapsed Time -- Refining Family R=95 / 332 ( RS Elements: 90, Using 90 ): - numRounds = 5 - Consensus Length = 68 ( orig = 68 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=819 / 333 ( RS Elements: 90, Using 90 ): - numRounds = 4 - Consensus Length = 50 ( orig = 50 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=681 / 334 ( RS Elements: 89, Using 89 ): - numRounds = 4 - Consensus Length = 162 ( orig = 163 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=504 / 335 ( RS Elements: 88, Using 88 ): - numRounds = 5 - Consensus Length = 359 ( orig = 359 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=180 / 336 ( RS Elements: 87, Using 87 ): - numRounds = 4 - Consensus Length = 60 ( orig = 60 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=560 / 337 ( RS Elements: 87, Using 87 ): - numRounds = 6 - Consensus Length = 871 ( orig = 863 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=440 / 338 ( RS Elements: 87, Using 87 ): - numRounds = 5 - Consensus Length = 938 ( orig = 941 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:14 Elapsed Time Refinement: 00:00:14 (hh:mm:ss) Elapsed Time -- Refining Family R=727 / 339 ( RS Elements: 87, Using 87 ): - numRounds = 5 - Consensus Length = 176 ( orig = 176 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=646 / 340 ( RS Elements: 87, Using 87 ): - numRounds = 4 - Consensus Length = 98 ( orig = 98 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=527 / 341 ( RS Elements: 86, Using 86 ): - numRounds = 7 - Consensus Length = 131 ( orig = 131 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:19 Elapsed Time Refinement: 00:00:19 (hh:mm:ss) Elapsed Time -- Refining Family R=647 / 342 ( RS Elements: 86, Using 86 ): - numRounds = 4 - Consensus Length = 103 ( orig = 103 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=1094 / 343 ( RS Elements: 86, Using 86 ): - numRounds = 8 - Consensus Length = 525 ( orig = 525 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 8 ) Build Consensus: 0:0:18 Elapsed Time Refinement: 00:00:19 (hh:mm:ss) Elapsed Time -- Refining Family R=261 / 344 ( RS Elements: 86, Using 86 ): - numRounds = 6 - Consensus Length = 463 ( orig = 465 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=172 / 345 ( RS Elements: 85, Using 85 ): - numRounds = 5 - Consensus Length = 683 ( orig = 683 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=447 / 346 ( RS Elements: 85, Using 85 ): - numRounds = 4 - Consensus Length = 62 ( orig = 62 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=210 / 347 ( RS Elements: 85, Using 85 ): - numRounds = 5 - Consensus Length = 131 ( orig = 131 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=1412 / 348 ( RS Elements: 84, Using 84 ): - numRounds = 9 - Consensus Length = 1262 ( orig = 1264 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 8 ) Build Consensus: 0:0:26 Elapsed Time Refinement: 00:00:26 (hh:mm:ss) Elapsed Time -- Refining Family R=245 / 349 ( RS Elements: 84, Using 84 ): - numRounds = 6 - Consensus Length = 196 ( orig = 196 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=356 / 350 ( RS Elements: 84, Using 84 ): - numRounds = 5 - Consensus Length = 75 ( orig = 75 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=146 / 351 ( RS Elements: 84, Using 84 ): - numRounds = 6 - Consensus Length = 414 ( orig = 402 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 43 ( orig = 43 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=431 / 352 ( RS Elements: 84, Using 84 ): - numRounds = 6 - Consensus Length = 295 ( orig = 295 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 8 ) Build Consensus: 0:0:18 Elapsed Time Refinement: 00:00:18 (hh:mm:ss) Elapsed Time -- Refining Family R=1921 / 353 ( RS Elements: 84, Using 84 ): - numRounds = 4 - Consensus Length = 76 ( orig = 76 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=273 / 354 ( RS Elements: 84, Using 84 ): - numRounds = 5 - Consensus Length = 552 ( orig = 552 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=139 / 355 ( RS Elements: 84, Using 84 ): - numRounds = 5 - Consensus Length = 1036 ( orig = 1037 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:18 Elapsed Time Refinement: 00:00:18 (hh:mm:ss) Elapsed Time -- Refining Family R=220 / 356 ( RS Elements: 84, Using 84 ): - numRounds = 5 - Consensus Length = 142 ( orig = 142 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=314 / 357 ( RS Elements: 83, Using 83 ): - numRounds = 4 - Consensus Length = 287 ( orig = 287 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=965 / 358 ( RS Elements: 83, Using 83 ): - numRounds = 4 - Consensus Length = 83 ( orig = 83 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=741 / 359 ( RS Elements: 83, Using 83 ): - numRounds = 4 - Consensus Length = 79 ( orig = 79 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=350 / 360 ( RS Elements: 83, Using 83 ): - numRounds = 4 - Consensus Length = 122 ( orig = 122 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=631 / 361 ( RS Elements: 83, Using 83 ): - numRounds = 9 - Consensus Length = 552 ( orig = 553 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 0 ) Build Consensus: 0:0:17 Elapsed Time Refinement: 00:00:18 (hh:mm:ss) Elapsed Time -- Refining Family R=114 / 362 ( RS Elements: 83, Using 83 ): - numRounds = 4 - Consensus Length = 281 ( orig = 281 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=372 / 363 ( RS Elements: 82, Using 82 ): - numRounds = 5 - Consensus Length = 394 ( orig = 394 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=234 / 364 ( RS Elements: 82, Using 82 ): - numRounds = 6 - Consensus Length = 1138 ( orig = 1142 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:16 Elapsed Time Refinement: 00:00:16 (hh:mm:ss) Elapsed Time -- Refining Family R=549 / 365 ( RS Elements: 82, Using 82 ): - numRounds = 6 - Consensus Length = 606 ( orig = 620 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=566 / 366 ( RS Elements: 82, Using 82 ): - numRounds = 5 - Consensus Length = 619 ( orig = 619 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=418 / 367 ( RS Elements: 82, Using 82 ): - numRounds = 6 - Consensus Length = 160 ( orig = 160 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=227 / 368 ( RS Elements: 81, Using 81 ): - numRounds = 5 - Consensus Length = 228 ( orig = 228 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=593 / 369 ( RS Elements: 81, Using 81 ): - numRounds = 7 - Consensus Length = 709 ( orig = 709 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 5 ) Build Consensus: 0:0:16 Elapsed Time Refinement: 00:00:16 (hh:mm:ss) Elapsed Time -- Refining Family R=214 / 370 ( RS Elements: 80, Using 80 ): - numRounds = 7 - Consensus Length = 686 ( orig = 689 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:18 Elapsed Time Refinement: 00:00:18 (hh:mm:ss) Elapsed Time -- Refining Family R=604 / 371 ( RS Elements: 80, Using 80 ): - numRounds = 5 - Consensus Length = 200 ( orig = 200 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=305 / 372 ( RS Elements: 79, Using 79 ): - numRounds = 6 - Consensus Length = 251 ( orig = 251 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=1376 / 373 ( RS Elements: 79, Using 79 ): - numRounds = 5 - Consensus Length = 278 ( orig = 279 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=179 / 374 ( RS Elements: 79, Using 79 ): - numRounds = 4 - Consensus Length = 275 ( orig = 275 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=243 / 375 ( RS Elements: 79, Using 79 ): - numRounds = 4 - Consensus Length = 110 ( orig = 110 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=1091 / 376 ( RS Elements: 78, Using 78 ): - numRounds = 8 - Consensus Length = 2565 ( orig = 2565 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:33 Elapsed Time Refinement: 00:00:34 (hh:mm:ss) Elapsed Time -- Refining Family R=407 / 377 ( RS Elements: 78, Using 78 ): - numRounds = 6 - Consensus Length = 73 ( orig = 75 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=421 / 378 ( RS Elements: 77, Using 77 ): - numRounds = 4 - Consensus Length = 123 ( orig = 123 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1515 / 379 ( RS Elements: 77, Using 77 ): - numRounds = 4 - Consensus Length = 88 ( orig = 88 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=341 / 380 ( RS Elements: 76, Using 76 ): - numRounds = 6 - Consensus Length = 397 ( orig = 396 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=1139 / 381 ( RS Elements: 76, Using 76 ): - numRounds = 9 - Consensus Length = 1487 ( orig = 1486 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 7 ) Build Consensus: 0:0:31 Elapsed Time Refinement: 00:00:31 (hh:mm:ss) Elapsed Time -- Refining Family R=1690 / 382 ( RS Elements: 76, Using 76 ): - numRounds = 4 - Consensus Length = 63 ( orig = 63 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=1162 / 383 ( RS Elements: 76, Using 76 ): - numRounds = 4 - Consensus Length = 60 ( orig = 60 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=971 / 384 ( RS Elements: 76, Using 76 ): - numRounds = 4 - Consensus Length = 61 ( orig = 61 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=334 / 385 ( RS Elements: 76, Using 76 ): - numRounds = 4 - Consensus Length = 83 ( orig = 83 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=266 / 386 ( RS Elements: 76, Using 76 ): - numRounds = 4 - Consensus Length = 70 ( orig = 70 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=171 / 387 ( RS Elements: 75, Using 75 ): - numRounds = 4 - Consensus Length = 80 ( orig = 80 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=591 / 388 ( RS Elements: 75, Using 75 ): - numRounds = 9 - Consensus Length = 788 ( orig = 801 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=640 / 389 ( RS Elements: 74, Using 74 ): - numRounds = 4 - Consensus Length = 100 ( orig = 100 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=491 / 390 ( RS Elements: 74, Using 74 ): - numRounds = 6 - Consensus Length = 1058 ( orig = 1058 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time -- Refining Family R=313 / 391 ( RS Elements: 73, Using 73 ): - numRounds = 8 - Consensus Length = 1460 ( orig = 1460 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:20 Elapsed Time Refinement: 00:00:20 (hh:mm:ss) Elapsed Time -- Refining Family R=1471 / 392 ( RS Elements: 73, Using 73 ): - numRounds = 5 - Consensus Length = 110 ( orig = 108 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=1680 / 393 ( RS Elements: 72, Using 72 ): - numRounds = 5 - Consensus Length = 242 ( orig = 242 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=255 / 394 ( RS Elements: 72, Using 72 ): - numRounds = 6 - Consensus Length = 1030 ( orig = 1026 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 1 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=887 / 395 ( RS Elements: 72, Using 72 ): - numRounds = 5 - Consensus Length = 137 ( orig = 137 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=619 / 396 ( RS Elements: 72, Using 72 ): - numRounds = 5 - Consensus Length = 82 ( orig = 82 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=268 / 397 ( RS Elements: 70, Using 70 ): - numRounds = 4 - Consensus Length = 102 ( orig = 102 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=173 / 398 ( RS Elements: 70, Using 70 ): - numRounds = 4 - Consensus Length = 91 ( orig = 91 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=367 / 399 ( RS Elements: 70, Using 70 ): - numRounds = 4 - Consensus Length = 71 ( orig = 71 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1637 / 400 ( RS Elements: 70, Using 70 ): - numRounds = 6 - Consensus Length = 135 ( orig = 131 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=1280 / 401 ( RS Elements: 70, Using 70 ): - numRounds = 4 - Consensus Length = 129 ( orig = 129 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=732 / 402 ( RS Elements: 70, Using 70 ): - numRounds = 6 - Consensus Length = 486 ( orig = 485 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=395 / 403 ( RS Elements: 69, Using 69 ): - numRounds = 5 - Consensus Length = 190 ( orig = 190 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=1401 / 404 ( RS Elements: 69, Using 69 ): - numRounds = 4 - Consensus Length = 59 ( orig = 59 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=134 / 405 ( RS Elements: 69, Using 69 ): - numRounds = 4 - Consensus Length = 305 ( orig = 305 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=729 / 406 ( RS Elements: 68, Using 68 ): - numRounds = 8 - Consensus Length = 353 ( orig = 344 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=1173 / 407 ( RS Elements: 67, Using 67 ): - numRounds = 4 - Consensus Length = 86 ( orig = 86 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=278 / 408 ( RS Elements: 67, Using 67 ): - numRounds = 4 - Consensus Length = 501 ( orig = 501 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=922 / 409 ( RS Elements: 66, Using 66 ): - numRounds = 6 - Consensus Length = 963 ( orig = 957 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=307 / 410 ( RS Elements: 66, Using 66 ): - numRounds = 4 - Consensus Length = 1120 ( orig = 1120 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=502 / 411 ( RS Elements: 66, Using 66 ): - numRounds = 11 - Consensus Length = 778 ( orig = 778 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time -- Refining Family R=984 / 412 ( RS Elements: 66, Using 66 ): - numRounds = 5 - Consensus Length = 354 ( orig = 354 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=1231 / 413 ( RS Elements: 65, Using 65 ): - numRounds = 7 - Consensus Length = 664 ( orig = 667 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=546 / 414 ( RS Elements: 65, Using 65 ): - numRounds = 7 - Consensus Length = 960 ( orig = 960 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 0 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time -- Refining Family R=1581 / 415 ( RS Elements: 65, Using 65 ): - numRounds = 4 - Consensus Length = 57 ( orig = 57 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=836 / 416 ( RS Elements: 65, Using 65 ): - numRounds = 5 - Consensus Length = 106 ( orig = 106 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=315 / 417 ( RS Elements: 65, Using 65 ): - numRounds = 8 - Consensus Length = 1269 ( orig = 1270 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 0 ) Build Consensus: 0:0:20 Elapsed Time Refinement: 00:00:20 (hh:mm:ss) Elapsed Time -- Refining Family R=272 / 418 ( RS Elements: 65, Using 65 ): - numRounds = 4 - Consensus Length = 81 ( orig = 81 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=555 / 419 ( RS Elements: 65, Using 65 ): - numRounds = 4 - Consensus Length = 104 ( orig = 104 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=416 / 420 ( RS Elements: 65, Using 65 ): - numRounds = 7 - Consensus Length = 718 ( orig = 719 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time -- Refining Family R=914 / 421 ( RS Elements: 65, Using 65 ): - numRounds = 6 - Consensus Length = 415 ( orig = 410 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=1437 / 422 ( RS Elements: 64, Using 64 ): - numRounds = 8 - Consensus Length = 214 ( orig = 214 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=1127 / 423 ( RS Elements: 64, Using 64 ): - numRounds = 4 - Consensus Length = 63 ( orig = 63 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=537 / 424 ( RS Elements: 63, Using 63 ): - numRounds = 4 - Consensus Length = 73 ( orig = 73 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=204 / 425 ( RS Elements: 63, Using 63 ): - numRounds = 5 - Consensus Length = 990 ( orig = 990 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=876 / 426 ( RS Elements: 63, Using 63 ): - numRounds = 4 - Consensus Length = 82 ( orig = 82 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=300 / 427 ( RS Elements: 63, Using 63 ): - numRounds = 6 - Consensus Length = 163 ( orig = 163 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=1768 / 428 ( RS Elements: 63, Using 63 ): - numRounds = 4 - Consensus Length = 143 ( orig = 143 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 8 ( orig = 14 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=406 / 429 ( RS Elements: 63, Using 63 ): - numRounds = 5 - Consensus Length = 182 ( orig = 182 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=1476 / 430 ( RS Elements: 62, Using 62 ): - numRounds = 4 - Consensus Length = 117 ( orig = 117 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=165 / 431 ( RS Elements: 62, Using 62 ): - numRounds = 5 - Consensus Length = 199 ( orig = 199 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=292 / 432 ( RS Elements: 62, Using 62 ): - numRounds = 4 - Consensus Length = 379 ( orig = 379 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=486 / 433 ( RS Elements: 62, Using 62 ): - numRounds = 4 - Consensus Length = 74 ( orig = 74 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=299 / 434 ( RS Elements: 61, Using 61 ): - numRounds = 6 - Consensus Length = 83 ( orig = 83 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=832 / 435 ( RS Elements: 61, Using 61 ): - numRounds = 5 - Consensus Length = 75 ( orig = 75 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=335 / 436 ( RS Elements: 60, Using 60 ): - numRounds = 4 - Consensus Length = 47 ( orig = 47 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1253 / 437 ( RS Elements: 60, Using 60 ): - numRounds = 5 - Consensus Length = 318 ( orig = 318 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=318 / 438 ( RS Elements: 60, Using 60 ): - numRounds = 5 - Consensus Length = 106 ( orig = 106 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=1851 / 439 ( RS Elements: 60, Using 60 ): - numRounds = 6 - Consensus Length = 368 ( orig = 368 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 3 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=1602 / 440 ( RS Elements: 60, Using 60 ): - numRounds = 9 - Consensus Length = 500 ( orig = 500 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 3 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:14 (hh:mm:ss) Elapsed Time -- Refining Family R=1002 / 441 ( RS Elements: 59, Using 59 ): - numRounds = 6 - Consensus Length = 500 ( orig = 497 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=544 / 442 ( RS Elements: 59, Using 59 ): - numRounds = 7 - Consensus Length = 454 ( orig = 452 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=465 / 443 ( RS Elements: 59, Using 59 ): - numRounds = 4 - Consensus Length = 68 ( orig = 69 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=656 / 444 ( RS Elements: 58, Using 58 ): - numRounds = 5 - Consensus Length = 541 ( orig = 541 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=265 / 445 ( RS Elements: 58, Using 58 ): - numRounds = 4 - Consensus Length = 138 ( orig = 138 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1848 / 446 ( RS Elements: 58, Using 58 ): - numRounds = 4 - Consensus Length = 111 ( orig = 111 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=329 / 447 ( RS Elements: 58, Using 58 ): - numRounds = 6 - Consensus Length = 671 ( orig = 670 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=1895 / 448 ( RS Elements: 58, Using 58 ): - numRounds = 4 - Consensus Length = 55 ( orig = 55 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1219 / 449 ( RS Elements: 58, Using 58 ): - numRounds = 5 - Consensus Length = 146 ( orig = 146 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=1644 / 450 ( RS Elements: 57, Using 57 ): - numRounds = 5 - Consensus Length = 177 ( orig = 176 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=244 / 451 ( RS Elements: 57, Using 57 ): - numRounds = 6 - Consensus Length = 845 ( orig = 846 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=449 / 452 ( RS Elements: 57, Using 57 ): - numRounds = 5 - Consensus Length = 387 ( orig = 386 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=893 / 453 ( RS Elements: 57, Using 57 ): - numRounds = 7 - Consensus Length = 354 ( orig = 357 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=1147 / 454 ( RS Elements: 57, Using 57 ): - numRounds = 8 - Consensus Length = 746 ( orig = 749 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 4 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time -- Refining Family R=415 / 455 ( RS Elements: 57, Using 57 ): - numRounds = 5 - Consensus Length = 1409 ( orig = 1409 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=371 / 456 ( RS Elements: 57, Using 57 ): - numRounds = 7 - Consensus Length = 814 ( orig = 804 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 20 ( orig = 20 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=1977 / 457 ( RS Elements: 56, Using 56 ): - numRounds = 4 - Consensus Length = 59 ( orig = 59 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1572 / 458 ( RS Elements: 56, Using 56 ): - numRounds = 4 - Consensus Length = 66 ( orig = 66 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=452 / 459 ( RS Elements: 56, Using 56 ): - numRounds = 6 - Consensus Length = 844 ( orig = 844 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=736 / 460 ( RS Elements: 56, Using 56 ): - numRounds = 4 - Consensus Length = 239 ( orig = 239 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=644 / 461 ( RS Elements: 56, Using 56 ): - numRounds = 4 - Consensus Length = 121 ( orig = 121 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=216 / 462 ( RS Elements: 55, Using 55 ): - numRounds = 4 - Consensus Length = 57 ( orig = 57 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=513 / 463 ( RS Elements: 55, Using 55 ): - numRounds = 4 - Consensus Length = 105 ( orig = 105 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=425 / 464 ( RS Elements: 55, Using 55 ): - numRounds = 5 - Consensus Length = 316 ( orig = 316 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=1072 / 465 ( RS Elements: 55, Using 55 ): - numRounds = 4 - Consensus Length = 122 ( orig = 122 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=325 / 466 ( RS Elements: 55, Using 55 ): - numRounds = 4 - Consensus Length = 98 ( orig = 98 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=885 / 467 ( RS Elements: 54, Using 54 ): - numRounds = 4 - Consensus Length = 71 ( orig = 71 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=399 / 468 ( RS Elements: 53, Using 53 ): - numRounds = 6 - Consensus Length = 174 ( orig = 174 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=445 / 469 ( RS Elements: 53, Using 53 ): - numRounds = 4 - Consensus Length = 353 ( orig = 353 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=693 / 470 ( RS Elements: 53, Using 53 ): - numRounds = 5 - Consensus Length = 302 ( orig = 302 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=427 / 471 ( RS Elements: 53, Using 53 ): - numRounds = 5 - Consensus Length = 184 ( orig = 184 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=1528 / 472 ( RS Elements: 53, Using 53 ): - numRounds = 5 - Consensus Length = 292 ( orig = 293 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=309 / 473 ( RS Elements: 52, Using 52 ): - numRounds = 7 - Consensus Length = 620 ( orig = 620 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=223 / 474 ( RS Elements: 52, Using 52 ): - numRounds = 4 - Consensus Length = 348 ( orig = 348 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=1756 / 475 ( RS Elements: 52, Using 52 ): - numRounds = 4 - Consensus Length = 146 ( orig = 146 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=188 / 476 ( RS Elements: 52, Using 52 ): - numRounds = 5 - Consensus Length = 873 ( orig = 881 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=1031 / 477 ( RS Elements: 52, Using 52 ): - numRounds = 5 - Consensus Length = 412 ( orig = 413 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=430 / 478 ( RS Elements: 51, Using 51 ): - numRounds = 4 - Consensus Length = 282 ( orig = 282 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=331 / 479 ( RS Elements: 51, Using 51 ): - numRounds = 4 - Consensus Length = 89 ( orig = 89 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=192 / 480 ( RS Elements: 51, Using 51 ): - numRounds = 4 - Consensus Length = 546 ( orig = 546 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=474 / 481 ( RS Elements: 51, Using 51 ): - numRounds = 8 - Consensus Length = 166 ( orig = 166 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=1146 / 482 ( RS Elements: 51, Using 51 ): - numRounds = 4 - Consensus Length = 337 ( orig = 337 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=1646 / 483 ( RS Elements: 51, Using 51 ): - numRounds = 4 - Consensus Length = 148 ( orig = 148 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1197 / 484 ( RS Elements: 51, Using 51 ): - numRounds = 5 - Consensus Length = 707 ( orig = 708 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=175 / 485 ( RS Elements: 51, Using 51 ): - numRounds = 7 - Consensus Length = 552 ( orig = 552 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=190 / 486 ( RS Elements: 51, Using 51 ): - numRounds = 5 - Consensus Length = 471 ( orig = 471 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=880 / 487 ( RS Elements: 50, Using 50 ): - numRounds = 4 - Consensus Length = 152 ( orig = 152 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 4 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=403 / 488 ( RS Elements: 50, Using 50 ): - numRounds = 4 - Consensus Length = 239 ( orig = 239 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1106 / 489 ( RS Elements: 50, Using 50 ): - numRounds = 4 - Consensus Length = 186 ( orig = 186 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=194 / 490 ( RS Elements: 50, Using 50 ): - numRounds = 4 - Consensus Length = 430 ( orig = 430 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=813 / 491 ( RS Elements: 50, Using 50 ): - numRounds = 5 - Consensus Length = 70 ( orig = 70 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=238 / 492 ( RS Elements: 50, Using 50 ): - numRounds = 5 - Consensus Length = 867 ( orig = 868 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=428 / 493 ( RS Elements: 49, Using 49 ): - numRounds = 5 - Consensus Length = 65 ( orig = 65 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1210 / 494 ( RS Elements: 49, Using 49 ): - numRounds = 6 - Consensus Length = 171 ( orig = 172 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=1545 / 495 ( RS Elements: 49, Using 49 ): - numRounds = 4 - Consensus Length = 64 ( orig = 64 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=271 / 496 ( RS Elements: 49, Using 49 ): - numRounds = 4 - Consensus Length = 111 ( orig = 111 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1618 / 497 ( RS Elements: 49, Using 49 ): - numRounds = 4 - Consensus Length = 85 ( orig = 85 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=520 / 498 ( RS Elements: 49, Using 49 ): - numRounds = 4 - Consensus Length = 199 ( orig = 198 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=477 / 499 ( RS Elements: 49, Using 49 ): - numRounds = 4 - Consensus Length = 64 ( orig = 64 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1194 / 500 ( RS Elements: 48, Using 48 ): - numRounds = 8 - Consensus Length = 810 ( orig = 809 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 6 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=405 / 501 ( RS Elements: 48, Using 48 ): - numRounds = 6 - Consensus Length = 449 ( orig = 448 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=1703 / 502 ( RS Elements: 48, Using 48 ): - numRounds = 5 - Consensus Length = 60 ( orig = 59 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=275 / 503 ( RS Elements: 48, Using 48 ): - numRounds = 4 - Consensus Length = 870 ( orig = 869 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=167 / 504 ( RS Elements: 48, Using 48 ): - numRounds = 6 - Consensus Length = 1562 ( orig = 1562 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time -- Refining Family R=909 / 505 ( RS Elements: 48, Using 48 ): - numRounds = 5 - Consensus Length = 525 ( orig = 527 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=301 / 506 ( RS Elements: 48, Using 48 ): - numRounds = 4 - Consensus Length = 1499 ( orig = 1499 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=295 / 507 ( RS Elements: 47, Using 47 ): - numRounds = 6 - Consensus Length = 173 ( orig = 173 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=542 / 508 ( RS Elements: 47, Using 47 ): - numRounds = 4 - Consensus Length = 124 ( orig = 124 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1450 / 509 ( RS Elements: 47, Using 47 ): - numRounds = 4 - Consensus Length = 270 ( orig = 270 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=823 / 510 ( RS Elements: 47, Using 47 ): - numRounds = 5 - Consensus Length = 546 ( orig = 547 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=453 / 511 ( RS Elements: 46, Using 46 ): - numRounds = 5 - Consensus Length = 322 ( orig = 322 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 6 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=1317 / 512 ( RS Elements: 46, Using 46 ): - numRounds = 6 - Consensus Length = 146 ( orig = 148 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=1142 / 513 ( RS Elements: 46, Using 46 ): - numRounds = 6 - Consensus Length = 504 ( orig = 504 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=781 / 514 ( RS Elements: 46, Using 46 ): - numRounds = 5 - Consensus Length = 801 ( orig = 801 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=1242 / 515 ( RS Elements: 45, Using 45 ): - numRounds = 4 - Consensus Length = 266 ( orig = 264 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1224 / 516 ( RS Elements: 45, Using 45 ): - numRounds = 5 - Consensus Length = 144 ( orig = 145 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1753 / 517 ( RS Elements: 45, Using 45 ): - numRounds = 4 - Consensus Length = 56 ( orig = 56 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=467 / 518 ( RS Elements: 45, Using 45 ): - numRounds = 4 - Consensus Length = 63 ( orig = 63 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=187 / 519 ( RS Elements: 45, Using 45 ): - numRounds = 5 - Consensus Length = 557 ( orig = 557 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=633 / 520 ( RS Elements: 45, Using 45 ): - numRounds = 4 - Consensus Length = 573 ( orig = 573 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=338 / 521 ( RS Elements: 44, Using 44 ): - numRounds = 6 - Consensus Length = 1300 ( orig = 1300 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=162 / 522 ( RS Elements: 44, Using 44 ): - numRounds = 5 - Consensus Length = 700 ( orig = 703 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=470 / 523 ( RS Elements: 44, Using 44 ): - numRounds = 7 - Consensus Length = 734 ( orig = 733 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=756 / 524 ( RS Elements: 44, Using 44 ): - numRounds = 4 - Consensus Length = 288 ( orig = 288 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=479 / 525 ( RS Elements: 44, Using 44 ): - numRounds = 4 - Consensus Length = 129 ( orig = 129 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=966 / 526 ( RS Elements: 44, Using 44 ): - numRounds = 4 - Consensus Length = 134 ( orig = 136 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=1065 / 527 ( RS Elements: 44, Using 44 ): - numRounds = 4 - Consensus Length = 65 ( orig = 65 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1291 / 528 ( RS Elements: 44, Using 44 ): - numRounds = 4 - Consensus Length = 98 ( orig = 98 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1282 / 529 ( RS Elements: 44, Using 44 ): - numRounds = 8 - Consensus Length = 232 ( orig = 232 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=516 / 530 ( RS Elements: 43, Using 43 ): - numRounds = 6 - Consensus Length = 594 ( orig = 593 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=382 / 531 ( RS Elements: 43, Using 43 ): - numRounds = 8 - Consensus Length = 450 ( orig = 450 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=950 / 532 ( RS Elements: 43, Using 43 ): - numRounds = 4 - Consensus Length = 211 ( orig = 211 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1247 / 533 ( RS Elements: 43, Using 43 ): - numRounds = 4 - Consensus Length = 108 ( orig = 108 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=694 / 534 ( RS Elements: 43, Using 43 ): - numRounds = 4 - Consensus Length = 143 ( orig = 143 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=974 / 535 ( RS Elements: 43, Using 43 ): - numRounds = 4 - Consensus Length = 56 ( orig = 56 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1751 / 536 ( RS Elements: 42, Using 42 ): - numRounds = 4 - Consensus Length = 98 ( orig = 98 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=929 / 537 ( RS Elements: 42, Using 42 ): - numRounds = 6 - Consensus Length = 1341 ( orig = 1339 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 6 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time -- Refining Family R=874 / 538 ( RS Elements: 42, Using 42 ): - numRounds = 6 - Consensus Length = 578 ( orig = 578 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=326 / 539 ( RS Elements: 41, Using 41 ): - numRounds = 5 - Consensus Length = 332 ( orig = 332 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=697 / 540 ( RS Elements: 41, Using 41 ): - numRounds = 4 - Consensus Length = 277 ( orig = 277 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=485 / 541 ( RS Elements: 41, Using 41 ): - numRounds = 5 - Consensus Length = 475 ( orig = 475 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time -- Refining Family R=1335 / 542 ( RS Elements: 41, Using 41 ): - numRounds = 5 - Consensus Length = 734 ( orig = 735 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=977 / 543 ( RS Elements: 41, Using 41 ): - numRounds = 5 - Consensus Length = 172 ( orig = 171 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=355 / 544 ( RS Elements: 40, Using 40 ): - numRounds = 5 - Consensus Length = 144 ( orig = 144 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1153 / 545 ( RS Elements: 40, Using 40 ): - numRounds = 4 - Consensus Length = 84 ( orig = 84 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=941 / 546 ( RS Elements: 40, Using 40 ): - numRounds = 4 - Consensus Length = 56 ( orig = 56 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=182 / 547 ( RS Elements: 40, Using 40 ): - numRounds = 5 - Consensus Length = 1021 ( orig = 1021 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time -- Refining Family R=883 / 548 ( RS Elements: 40, Using 40 ): - numRounds = 5 - Consensus Length = 127 ( orig = 127 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=500 / 549 ( RS Elements: 40, Using 40 ): - numRounds = 4 - Consensus Length = 127 ( orig = 127 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=706 / 550 ( RS Elements: 39, Using 39 ): - numRounds = 5 - Consensus Length = 321 ( orig = 320 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1220 / 551 ( RS Elements: 39, Using 39 ): - numRounds = 5 - Consensus Length = 388 ( orig = 390 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1260 / 552 ( RS Elements: 39, Using 39 ): - numRounds = 4 - Consensus Length = 135 ( orig = 135 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1686 / 553 ( RS Elements: 39, Using 39 ): - numRounds = 4 - Consensus Length = 75 ( orig = 75 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=320 / 554 ( RS Elements: 39, Using 39 ): - numRounds = 4 - Consensus Length = 264 ( orig = 264 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=189 / 555 ( RS Elements: 39, Using 39 ): - numRounds = 5 - Consensus Length = 416 ( orig = 416 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=768 / 556 ( RS Elements: 39, Using 39 ): - numRounds = 4 - Consensus Length = 128 ( orig = 128 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=488 / 557 ( RS Elements: 39, Using 39 ): - numRounds = 5 - Consensus Length = 720 ( orig = 720 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=634 / 558 ( RS Elements: 38, Using 38 ): - numRounds = 4 - Consensus Length = 107 ( orig = 107 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=754 / 559 ( RS Elements: 38, Using 38 ): - numRounds = 5 - Consensus Length = 513 ( orig = 514 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=257 / 560 ( RS Elements: 38, Using 38 ): - numRounds = 4 - Consensus Length = 56 ( orig = 56 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=515 / 561 ( RS Elements: 38, Using 38 ): - numRounds = 7 - Consensus Length = 375 ( orig = 376 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=746 / 562 ( RS Elements: 38, Using 38 ): - numRounds = 4 - Consensus Length = 115 ( orig = 115 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=585 / 563 ( RS Elements: 38, Using 38 ): - numRounds = 4 - Consensus Length = 105 ( orig = 105 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=368 / 564 ( RS Elements: 38, Using 38 ): - numRounds = 5 - Consensus Length = 221 ( orig = 221 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1296 / 565 ( RS Elements: 38, Using 38 ): - numRounds = 4 - Consensus Length = 67 ( orig = 67 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=969 / 566 ( RS Elements: 38, Using 38 ): - numRounds = 5 - Consensus Length = 158 ( orig = 158 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1480 / 567 ( RS Elements: 38, Using 38 ): - numRounds = 4 - Consensus Length = 191 ( orig = 191 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=256 / 568 ( RS Elements: 38, Using 38 ): - numRounds = 5 - Consensus Length = 337 ( orig = 337 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1328 / 569 ( RS Elements: 38, Using 38 ): - numRounds = 7 - Consensus Length = 227 ( orig = 222 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=444 / 570 ( RS Elements: 37, Using 37 ): - numRounds = 4 - Consensus Length = 179 ( orig = 179 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=115 / 571 ( RS Elements: 37, Using 37 ): - numRounds = 4 - Consensus Length = 224 ( orig = 224 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1567 / 572 ( RS Elements: 37, Using 37 ): - numRounds = 7 - Consensus Length = 176 ( orig = 176 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 7 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=770 / 573 ( RS Elements: 37, Using 37 ): - numRounds = 5 - Consensus Length = 131 ( orig = 131 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=249 / 574 ( RS Elements: 37, Using 37 ): - numRounds = 4 - Consensus Length = 1417 ( orig = 1417 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=769 / 575 ( RS Elements: 37, Using 37 ): - numRounds = 4 - Consensus Length = 52 ( orig = 52 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=279 / 576 ( RS Elements: 37, Using 37 ): - numRounds = 6 - Consensus Length = 292 ( orig = 290 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=1225 / 577 ( RS Elements: 37, Using 37 ): - numRounds = 4 - Consensus Length = 100 ( orig = 100 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=506 / 578 ( RS Elements: 37, Using 37 ): - numRounds = 4 - Consensus Length = 522 ( orig = 522 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=376 / 579 ( RS Elements: 37, Using 37 ): - numRounds = 4 - Consensus Length = 78 ( orig = 78 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=414 / 580 ( RS Elements: 36, Using 36 ): - numRounds = 5 - Consensus Length = 513 ( orig = 513 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=888 / 581 ( RS Elements: 36, Using 36 ): - numRounds = 5 - Consensus Length = 194 ( orig = 194 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=303 / 582 ( RS Elements: 36, Using 36 ): - numRounds = 4 - Consensus Length = 297 ( orig = 297 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=759 / 583 ( RS Elements: 36, Using 36 ): - numRounds = 5 - Consensus Length = 724 ( orig = 721 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=386 / 584 ( RS Elements: 36, Using 36 ): - numRounds = 5 - Consensus Length = 313 ( orig = 313 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=259 / 585 ( RS Elements: 36, Using 36 ): - numRounds = 4 - Consensus Length = 62 ( orig = 62 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=353 / 586 ( RS Elements: 36, Using 36 ): - numRounds = 7 - Consensus Length = 535 ( orig = 533 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=280 / 587 ( RS Elements: 36, Using 36 ): - numRounds = 4 - Consensus Length = 421 ( orig = 421 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=311 / 588 ( RS Elements: 36, Using 36 ): - numRounds = 4 - Consensus Length = 182 ( orig = 182 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1202 / 589 ( RS Elements: 36, Using 36 ): - numRounds = 4 - Consensus Length = 265 ( orig = 265 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=420 / 590 ( RS Elements: 35, Using 35 ): - numRounds = 5 - Consensus Length = 678 ( orig = 678 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=825 / 591 ( RS Elements: 35, Using 35 ): - numRounds = 4 - Consensus Length = 251 ( orig = 251 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1033 / 592 ( RS Elements: 35, Using 35 ): - numRounds = 5 - Consensus Length = 252 ( orig = 251 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=481 / 593 ( RS Elements: 35, Using 35 ): - numRounds = 5 - Consensus Length = 566 ( orig = 569 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1521 / 594 ( RS Elements: 35, Using 35 ): - numRounds = 4 - Consensus Length = 117 ( orig = 117 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=616 / 595 ( RS Elements: 35, Using 35 ): - numRounds = 5 - Consensus Length = 428 ( orig = 428 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=954 / 596 ( RS Elements: 35, Using 35 ): - numRounds = 5 - Consensus Length = 189 ( orig = 189 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=568 / 597 ( RS Elements: 35, Using 35 ): - numRounds = 6 - Consensus Length = 510 ( orig = 509 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=972 / 598 ( RS Elements: 35, Using 35 ): - numRounds = 4 - Consensus Length = 182 ( orig = 182 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=2065 / 599 ( RS Elements: 34, Using 34 ): - numRounds = 4 - Consensus Length = 56 ( orig = 56 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1299 / 600 ( RS Elements: 34, Using 34 ): - numRounds = 4 - Consensus Length = 186 ( orig = 186 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=472 / 601 ( RS Elements: 34, Using 34 ): - numRounds = 4 - Consensus Length = 233 ( orig = 233 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=846 / 602 ( RS Elements: 34, Using 34 ): - numRounds = 4 - Consensus Length = 142 ( orig = 142 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=519 / 603 ( RS Elements: 34, Using 34 ): - numRounds = 4 - Consensus Length = 158 ( orig = 158 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1415 / 604 ( RS Elements: 34, Using 34 ): - numRounds = 4 - Consensus Length = 71 ( orig = 71 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=545 / 605 ( RS Elements: 34, Using 34 ): - numRounds = 6 - Consensus Length = 457 ( orig = 458 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1881 / 606 ( RS Elements: 34, Using 34 ): - numRounds = 7 - Consensus Length = 635 ( orig = 636 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=589 / 607 ( RS Elements: 34, Using 34 ): - numRounds = 8 - Consensus Length = 1359 ( orig = 1360 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time -- Refining Family R=1802 / 608 ( RS Elements: 34, Using 34 ): - numRounds = 5 - Consensus Length = 270 ( orig = 270 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=348 / 609 ( RS Elements: 34, Using 34 ): - numRounds = 4 - Consensus Length = 128 ( orig = 128 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=669 / 610 ( RS Elements: 33, Using 33 ): - numRounds = 4 - Consensus Length = 111 ( orig = 111 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=714 / 611 ( RS Elements: 33, Using 33 ): - numRounds = 4 - Consensus Length = 1220 ( orig = 1220 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=478 / 612 ( RS Elements: 33, Using 33 ): - numRounds = 6 - Consensus Length = 317 ( orig = 321 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=882 / 613 ( RS Elements: 33, Using 33 ): - numRounds = 5 - Consensus Length = 214 ( orig = 214 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=352 / 614 ( RS Elements: 33, Using 33 ): - numRounds = 4 - Consensus Length = 342 ( orig = 342 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=677 / 615 ( RS Elements: 33, Using 33 ): - numRounds = 4 - Consensus Length = 145 ( orig = 145 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=622 / 616 ( RS Elements: 33, Using 33 ): - numRounds = 4 - Consensus Length = 109 ( orig = 109 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=947 / 617 ( RS Elements: 33, Using 33 ): - numRounds = 4 - Consensus Length = 198 ( orig = 198 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=703 / 618 ( RS Elements: 32, Using 32 ): - numRounds = 5 - Consensus Length = 248 ( orig = 248 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=572 / 619 ( RS Elements: 32, Using 32 ): - numRounds = 4 - Consensus Length = 53 ( orig = 53 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=577 / 620 ( RS Elements: 32, Using 32 ): - numRounds = 4 - Consensus Length = 553 ( orig = 553 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=559 / 621 ( RS Elements: 32, Using 32 ): - numRounds = 4 - Consensus Length = 161 ( orig = 161 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=983 / 622 ( RS Elements: 32, Using 32 ): - numRounds = 5 - Consensus Length = 270 ( orig = 272 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1790 / 623 ( RS Elements: 32, Using 32 ): - numRounds = 4 - Consensus Length = 150 ( orig = 150 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=940 / 624 ( RS Elements: 32, Using 32 ): - numRounds = 4 - Consensus Length = 92 ( orig = 92 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=288 / 625 ( RS Elements: 32, Using 32 ): - numRounds = 7 - Consensus Length = 467 ( orig = 466 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=437 / 626 ( RS Elements: 32, Using 32 ): - numRounds = 4 - Consensus Length = 182 ( orig = 182 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=548 / 627 ( RS Elements: 32, Using 32 ): - numRounds = 5 - Consensus Length = 118 ( orig = 118 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=246 / 628 ( RS Elements: 31, Using 31 ): - numRounds = 4 - Consensus Length = 436 ( orig = 436 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1702 / 629 ( RS Elements: 31, Using 31 ): - numRounds = 5 - Consensus Length = 187 ( orig = 187 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=345 / 630 ( RS Elements: 31, Using 31 ): - numRounds = 6 - Consensus Length = 878 ( orig = 882 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1414 / 631 ( RS Elements: 31, Using 31 ): - numRounds = 4 - Consensus Length = 60 ( orig = 60 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=285 / 632 ( RS Elements: 31, Using 31 ): - numRounds = 5 - Consensus Length = 1209 ( orig = 1208 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=446 / 633 ( RS Elements: 31, Using 31 ): - numRounds = 4 - Consensus Length = 120 ( orig = 121 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=458 / 634 ( RS Elements: 31, Using 31 ): - numRounds = 4 - Consensus Length = 67 ( orig = 67 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=889 / 635 ( RS Elements: 31, Using 31 ): - numRounds = 4 - Consensus Length = 506 ( orig = 506 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=643 / 636 ( RS Elements: 31, Using 31 ): - numRounds = 4 - Consensus Length = 130 ( orig = 130 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1839 / 637 ( RS Elements: 31, Using 31 ): - numRounds = 4 - Consensus Length = 61 ( orig = 61 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=232 / 638 ( RS Elements: 31, Using 31 ): - numRounds = 5 - Consensus Length = 883 ( orig = 883 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=1735 / 639 ( RS Elements: 31, Using 31 ): - numRounds = 5 - Consensus Length = 237 ( orig = 233 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=213 / 640 ( RS Elements: 31, Using 31 ): - numRounds = 5 - Consensus Length = 324 ( orig = 325 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1498 / 641 ( RS Elements: 31, Using 31 ): - numRounds = 5 - Consensus Length = 94 ( orig = 94 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=850 / 642 ( RS Elements: 31, Using 31 ): - numRounds = 4 - Consensus Length = 490 ( orig = 490 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1416 / 643 ( RS Elements: 30, Using 30 ): - numRounds = 4 - Consensus Length = 119 ( orig = 119 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=424 / 644 ( RS Elements: 30, Using 30 ): - numRounds = 4 - Consensus Length = 177 ( orig = 177 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1359 / 645 ( RS Elements: 30, Using 30 ): - numRounds = 5 - Consensus Length = 447 ( orig = 447 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=306 / 646 ( RS Elements: 30, Using 30 ): - numRounds = 4 - Consensus Length = 60 ( orig = 60 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1614 / 647 ( RS Elements: 30, Using 30 ): - numRounds = 5 - Consensus Length = 73 ( orig = 73 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1286 / 648 ( RS Elements: 30, Using 30 ): - numRounds = 4 - Consensus Length = 69 ( orig = 69 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=762 / 649 ( RS Elements: 30, Using 30 ): - numRounds = 4 - Consensus Length = 93 ( orig = 93 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=497 / 650 ( RS Elements: 30, Using 30 ): - numRounds = 6 - Consensus Length = 466 ( orig = 467 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=1332 / 651 ( RS Elements: 30, Using 30 ): - numRounds = 4 - Consensus Length = 88 ( orig = 88 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=936 / 652 ( RS Elements: 30, Using 30 ): - numRounds = 5 - Consensus Length = 339 ( orig = 338 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=884 / 653 ( RS Elements: 30, Using 30 ): - numRounds = 6 - Consensus Length = 294 ( orig = 294 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=664 / 654 ( RS Elements: 29, Using 29 ): - numRounds = 5 - Consensus Length = 61 ( orig = 61 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1585 / 655 ( RS Elements: 29, Using 29 ): - numRounds = 4 - Consensus Length = 264 ( orig = 264 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=531 / 656 ( RS Elements: 29, Using 29 ): - numRounds = 4 - Consensus Length = 272 ( orig = 273 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=363 / 657 ( RS Elements: 29, Using 29 ): - numRounds = 4 - Consensus Length = 290 ( orig = 290 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=602 / 658 ( RS Elements: 29, Using 29 ): - numRounds = 7 - Consensus Length = 515 ( orig = 519 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=943 / 659 ( RS Elements: 29, Using 29 ): - numRounds = 6 - Consensus Length = 499 ( orig = 498 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=743 / 660 ( RS Elements: 29, Using 29 ): - numRounds = 8 - Consensus Length = 328 ( orig = 327 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=744 / 661 ( RS Elements: 29, Using 29 ): - numRounds = 6 - Consensus Length = 637 ( orig = 639 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1086 / 662 ( RS Elements: 29, Using 29 ): - numRounds = 5 - Consensus Length = 221 ( orig = 221 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=790 / 663 ( RS Elements: 28, Using 28 ): - numRounds = 5 - Consensus Length = 383 ( orig = 379 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1495 / 664 ( RS Elements: 28, Using 28 ): - numRounds = 6 - Consensus Length = 208 ( orig = 208 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1604 / 665 ( RS Elements: 28, Using 28 ): - numRounds = 4 - Consensus Length = 73 ( orig = 73 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=866 / 666 ( RS Elements: 28, Using 28 ): - numRounds = 4 - Consensus Length = 151 ( orig = 152 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=650 / 667 ( RS Elements: 28, Using 28 ): - numRounds = 4 - Consensus Length = 119 ( orig = 119 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=529 / 668 ( RS Elements: 28, Using 28 ): - numRounds = 5 - Consensus Length = 478 ( orig = 474 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=163 / 669 ( RS Elements: 28, Using 28 ): - numRounds = 4 - Consensus Length = 357 ( orig = 357 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=747 / 670 ( RS Elements: 28, Using 28 ): - numRounds = 5 - Consensus Length = 281 ( orig = 281 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1657 / 671 ( RS Elements: 28, Using 28 ): - numRounds = 4 - Consensus Length = 60 ( orig = 60 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1107 / 672 ( RS Elements: 28, Using 28 ): - numRounds = 5 - Consensus Length = 221 ( orig = 221 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=665 / 673 ( RS Elements: 28, Using 28 ): - numRounds = 6 - Consensus Length = 533 ( orig = 536 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1052 / 674 ( RS Elements: 28, Using 28 ): - numRounds = 5 - Consensus Length = 242 ( orig = 242 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1413 / 675 ( RS Elements: 28, Using 28 ): - numRounds = 4 - Consensus Length = 196 ( orig = 196 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1717 / 676 ( RS Elements: 27, Using 27 ): - numRounds = 6 - Consensus Length = 1023 ( orig = 1023 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time -- Refining Family R=834 / 677 ( RS Elements: 27, Using 27 ): - numRounds = 4 - Consensus Length = 78 ( orig = 78 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1663 / 678 ( RS Elements: 27, Using 27 ): - numRounds = 4 - Consensus Length = 53 ( orig = 53 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1001 / 679 ( RS Elements: 27, Using 27 ): - numRounds = 4 - Consensus Length = 101 ( orig = 101 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=344 / 680 ( RS Elements: 27, Using 27 ): - numRounds = 4 - Consensus Length = 382 ( orig = 382 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=683 / 681 ( RS Elements: 27, Using 27 ): - numRounds = 4 - Consensus Length = 94 ( orig = 94 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1093 / 682 ( RS Elements: 27, Using 27 ): - numRounds = 5 - Consensus Length = 1358 ( orig = 1361 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1223 / 683 ( RS Elements: 27, Using 27 ): - numRounds = 4 - Consensus Length = 140 ( orig = 140 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1440 / 684 ( RS Elements: 27, Using 27 ): - numRounds = 4 - Consensus Length = 173 ( orig = 173 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=715 / 685 ( RS Elements: 27, Using 27 ): - numRounds = 4 - Consensus Length = 56 ( orig = 56 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1391 / 686 ( RS Elements: 27, Using 27 ): - numRounds = 4 - Consensus Length = 131 ( orig = 131 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=511 / 687 ( RS Elements: 27, Using 27 ): - numRounds = 4 - Consensus Length = 230 ( orig = 230 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=270 / 688 ( RS Elements: 27, Using 27 ): - numRounds = 4 - Consensus Length = 469 ( orig = 469 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1622 / 689 ( RS Elements: 27, Using 27 ): - numRounds = 11 - Consensus Length = 224 ( orig = 227 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=618 / 690 ( RS Elements: 27, Using 27 ): - numRounds = 6 - Consensus Length = 650 ( orig = 650 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time -- Refining Family R=1292 / 691 ( RS Elements: 27, Using 27 ): - numRounds = 7 - Consensus Length = 485 ( orig = 485 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=1000 / 692 ( RS Elements: 27, Using 27 ): - numRounds = 5 - Consensus Length = 68 ( orig = 68 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=600 / 693 ( RS Elements: 27, Using 27 ): - numRounds = 6 - Consensus Length = 1461 ( orig = 1458 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=1705 / 694 ( RS Elements: 26, Using 26 ): - numRounds = 4 - Consensus Length = 94 ( orig = 94 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=844 / 695 ( RS Elements: 26, Using 26 ): - numRounds = 4 - Consensus Length = 76 ( orig = 76 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1252 / 696 ( RS Elements: 26, Using 26 ): - numRounds = 5 - Consensus Length = 130 ( orig = 130 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=597 / 697 ( RS Elements: 26, Using 26 ): - numRounds = 4 - Consensus Length = 267 ( orig = 267 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=815 / 698 ( RS Elements: 26, Using 26 ): - numRounds = 4 - Consensus Length = 131 ( orig = 131 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=484 / 699 ( RS Elements: 26, Using 26 ): - numRounds = 4 - Consensus Length = 103 ( orig = 103 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=728 / 700 ( RS Elements: 26, Using 26 ): - numRounds = 6 - Consensus Length = 870 ( orig = 870 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=782 / 701 ( RS Elements: 26, Using 26 ): - numRounds = 6 - Consensus Length = 925 ( orig = 925 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=321 / 702 ( RS Elements: 26, Using 26 ): - numRounds = 7 - Consensus Length = 636 ( orig = 636 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=558 / 703 ( RS Elements: 26, Using 26 ): - numRounds = 4 - Consensus Length = 121 ( orig = 122 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=550 / 704 ( RS Elements: 26, Using 26 ): - numRounds = 4 - Consensus Length = 71 ( orig = 71 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1063 / 705 ( RS Elements: 26, Using 26 ): - numRounds = 6 - Consensus Length = 492 ( orig = 492 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=498 / 706 ( RS Elements: 25, Using 25 ): - numRounds = 5 - Consensus Length = 943 ( orig = 951 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1704 / 707 ( RS Elements: 25, Using 25 ): - numRounds = 4 - Consensus Length = 63 ( orig = 63 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1244 / 708 ( RS Elements: 25, Using 25 ): - numRounds = 4 - Consensus Length = 446 ( orig = 445 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1493 / 709 ( RS Elements: 25, Using 25 ): - numRounds = 4 - Consensus Length = 106 ( orig = 106 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=964 / 710 ( RS Elements: 25, Using 25 ): - numRounds = 5 - Consensus Length = 103 ( orig = 103 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=737 / 711 ( RS Elements: 25, Using 25 ): - numRounds = 4 - Consensus Length = 179 ( orig = 182 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1058 / 712 ( RS Elements: 25, Using 25 ): - numRounds = 5 - Consensus Length = 150 ( orig = 149 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=438 / 713 ( RS Elements: 25, Using 25 ): - numRounds = 4 - Consensus Length = 916 ( orig = 914 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=570 / 714 ( RS Elements: 25, Using 25 ): - numRounds = 4 - Consensus Length = 176 ( orig = 176 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=615 / 715 ( RS Elements: 25, Using 25 ): - numRounds = 6 - Consensus Length = 102 ( orig = 113 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=871 / 716 ( RS Elements: 25, Using 25 ): - numRounds = 4 - Consensus Length = 253 ( orig = 253 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=587 / 717 ( RS Elements: 25, Using 25 ): - numRounds = 4 - Consensus Length = 87 ( orig = 87 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=489 / 718 ( RS Elements: 25, Using 25 ): - numRounds = 6 - Consensus Length = 466 ( orig = 466 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=398 / 719 ( RS Elements: 24, Using 24 ): - numRounds = 4 - Consensus Length = 367 ( orig = 365 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=679 / 720 ( RS Elements: 24, Using 24 ): - numRounds = 4 - Consensus Length = 80 ( orig = 80 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=778 / 721 ( RS Elements: 24, Using 24 ): - numRounds = 6 - Consensus Length = 250 ( orig = 250 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1125 / 722 ( RS Elements: 24, Using 24 ): - numRounds = 4 - Consensus Length = 74 ( orig = 74 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=837 / 723 ( RS Elements: 24, Using 24 ): - numRounds = 4 - Consensus Length = 64 ( orig = 64 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1257 / 724 ( RS Elements: 24, Using 24 ): - numRounds = 4 - Consensus Length = 619 ( orig = 613 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1942 / 725 ( RS Elements: 24, Using 24 ): - numRounds = 4 - Consensus Length = 181 ( orig = 181 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1691 / 726 ( RS Elements: 24, Using 24 ): - numRounds = 5 - Consensus Length = 132 ( orig = 132 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=518 / 727 ( RS Elements: 24, Using 24 ): - numRounds = 4 - Consensus Length = 122 ( orig = 122 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=455 / 728 ( RS Elements: 24, Using 24 ): - numRounds = 4 - Consensus Length = 418 ( orig = 421 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=771 / 729 ( RS Elements: 24, Using 24 ): - numRounds = 5 - Consensus Length = 102 ( orig = 103 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=923 / 730 ( RS Elements: 24, Using 24 ): - numRounds = 4 - Consensus Length = 335 ( orig = 335 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=935 / 731 ( RS Elements: 24, Using 24 ): - numRounds = 6 - Consensus Length = 288 ( orig = 288 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1397 / 732 ( RS Elements: 24, Using 24 ): - numRounds = 4 - Consensus Length = 79 ( orig = 79 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1190 / 733 ( RS Elements: 24, Using 24 ): - numRounds = 4 - Consensus Length = 151 ( orig = 151 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1901 / 734 ( RS Elements: 24, Using 24 ): - numRounds = 4 - Consensus Length = 133 ( orig = 133 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1042 / 735 ( RS Elements: 24, Using 24 ): - numRounds = 5 - Consensus Length = 95 ( orig = 95 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1448 / 736 ( RS Elements: 24, Using 24 ): - numRounds = 6 - Consensus Length = 135 ( orig = 135 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=652 / 737 ( RS Elements: 24, Using 24 ): - numRounds = 4 - Consensus Length = 220 ( orig = 219 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1061 / 738 ( RS Elements: 24, Using 24 ): - numRounds = 5 - Consensus Length = 147 ( orig = 146 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1265 / 739 ( RS Elements: 24, Using 24 ): - numRounds = 3 - Consensus Length = 64 ( orig = 64 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time -- Refining Family R=432 / 740 ( RS Elements: 23, Using 23 ): - numRounds = 4 - Consensus Length = 179 ( orig = 180 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=441 / 741 ( RS Elements: 23, Using 23 ): - numRounds = 4 - Consensus Length = 331 ( orig = 331 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=302 / 742 ( RS Elements: 23, Using 23 ): - numRounds = 5 - Consensus Length = 242 ( orig = 242 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=277 / 743 ( RS Elements: 23, Using 23 ): - numRounds = 4 - Consensus Length = 647 ( orig = 648 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1186 / 744 ( RS Elements: 23, Using 23 ): - numRounds = 7 - Consensus Length = 238 ( orig = 230 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1157 / 745 ( RS Elements: 23, Using 23 ): - numRounds = 4 - Consensus Length = 79 ( orig = 79 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=359 / 746 ( RS Elements: 23, Using 23 ): - numRounds = 4 - Consensus Length = 98 ( orig = 98 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=462 / 747 ( RS Elements: 23, Using 23 ): - numRounds = 4 - Consensus Length = 127 ( orig = 127 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=839 / 748 ( RS Elements: 23, Using 23 ): - numRounds = 5 - Consensus Length = 77 ( orig = 78 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=412 / 749 ( RS Elements: 23, Using 23 ): - numRounds = 5 - Consensus Length = 165 ( orig = 165 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=231 / 750 ( RS Elements: 23, Using 23 ): - numRounds = 4 - Consensus Length = 389 ( orig = 389 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=796 / 751 ( RS Elements: 23, Using 23 ): - numRounds = 4 - Consensus Length = 71 ( orig = 71 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1418 / 752 ( RS Elements: 23, Using 23 ): - numRounds = 4 - Consensus Length = 67 ( orig = 67 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time -- Refining Family R=1903 / 753 ( RS Elements: 22, Using 22 ): - numRounds = 4 - Consensus Length = 73 ( orig = 73 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1095 / 754 ( RS Elements: 22, Using 22 ): - numRounds = 4 - Consensus Length = 219 ( orig = 219 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1620 / 755 ( RS Elements: 22, Using 22 ): - numRounds = 6 - Consensus Length = 173 ( orig = 174 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1329 / 756 ( RS Elements: 22, Using 22 ): - numRounds = 6 - Consensus Length = 438 ( orig = 438 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=564 / 757 ( RS Elements: 22, Using 22 ): - numRounds = 4 - Consensus Length = 62 ( orig = 62 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1003 / 758 ( RS Elements: 22, Using 22 ): - numRounds = 4 - Consensus Length = 96 ( orig = 96 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1378 / 759 ( RS Elements: 22, Using 22 ): - numRounds = 5 - Consensus Length = 119 ( orig = 119 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1232 / 760 ( RS Elements: 22, Using 22 ): - numRounds = 5 - Consensus Length = 196 ( orig = 196 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=838 / 761 ( RS Elements: 22, Using 22 ): - numRounds = 4 - Consensus Length = 276 ( orig = 276 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=863 / 762 ( RS Elements: 22, Using 22 ): - numRounds = 4 - Consensus Length = 95 ( orig = 95 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1409 / 763 ( RS Elements: 22, Using 22 ): - numRounds = 4 - Consensus Length = 103 ( orig = 103 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=554 / 764 ( RS Elements: 22, Using 22 ): - numRounds = 4 - Consensus Length = 63 ( orig = 63 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=833 / 765 ( RS Elements: 22, Using 22 ): - numRounds = 4 - Consensus Length = 410 ( orig = 410 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=864 / 766 ( RS Elements: 22, Using 22 ): - numRounds = 4 - Consensus Length = 69 ( orig = 69 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=827 / 767 ( RS Elements: 22, Using 22 ): - numRounds = 4 - Consensus Length = 106 ( orig = 106 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1488 / 768 ( RS Elements: 22, Using 22 ): - numRounds = 5 - Consensus Length = 93 ( orig = 93 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=503 / 769 ( RS Elements: 22, Using 22 ): - numRounds = 5 - Consensus Length = 729 ( orig = 729 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1325 / 770 ( RS Elements: 22, Using 22 ): - numRounds = 4 - Consensus Length = 193 ( orig = 193 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=989 / 771 ( RS Elements: 22, Using 22 ): - numRounds = 4 - Consensus Length = 141 ( orig = 141 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=339 / 772 ( RS Elements: 22, Using 22 ): - numRounds = 4 - Consensus Length = 208 ( orig = 208 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=704 / 773 ( RS Elements: 21, Using 21 ): - numRounds = 4 - Consensus Length = 187 ( orig = 191 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1066 / 774 ( RS Elements: 21, Using 21 ): - numRounds = 4 - Consensus Length = 393 ( orig = 393 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=627 / 775 ( RS Elements: 21, Using 21 ): - numRounds = 4 - Consensus Length = 559 ( orig = 559 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=322 / 776 ( RS Elements: 21, Using 21 ): - numRounds = 4 - Consensus Length = 333 ( orig = 333 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=752 / 777 ( RS Elements: 21, Using 21 ): - numRounds = 4 - Consensus Length = 118 ( orig = 118 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=814 / 778 ( RS Elements: 21, Using 21 ): - numRounds = 4 - Consensus Length = 255 ( orig = 260 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1087 / 779 ( RS Elements: 21, Using 21 ): - numRounds = 4 - Consensus Length = 129 ( orig = 129 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1589 / 780 ( RS Elements: 21, Using 21 ): - numRounds = 4 - Consensus Length = 70 ( orig = 70 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=910 / 781 ( RS Elements: 21, Using 21 ): - numRounds = 4 - Consensus Length = 637 ( orig = 637 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=573 / 782 ( RS Elements: 21, Using 21 ): - numRounds = 4 - Consensus Length = 405 ( orig = 405 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1505 / 783 ( RS Elements: 21, Using 21 ): - numRounds = 5 - Consensus Length = 151 ( orig = 153 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=705 / 784 ( RS Elements: 21, Using 21 ): - numRounds = 4 - Consensus Length = 481 ( orig = 481 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1788 / 785 ( RS Elements: 21, Using 21 ): - numRounds = 3 - Consensus Length = 56 ( orig = 56 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=240 / 786 ( RS Elements: 21, Using 21 ): - numRounds = 4 - Consensus Length = 810 ( orig = 810 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1177 / 787 ( RS Elements: 21, Using 21 ): - numRounds = 4 - Consensus Length = 615 ( orig = 615 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1492 / 788 ( RS Elements: 21, Using 21 ): - numRounds = 4 - Consensus Length = 324 ( orig = 324 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=791 / 789 ( RS Elements: 21, Using 21 ): - numRounds = 5 - Consensus Length = 476 ( orig = 475 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=962 / 790 ( RS Elements: 20, Using 20 ): - numRounds = 7 - Consensus Length = 633 ( orig = 631 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1269 / 791 ( RS Elements: 20, Using 20 ): - numRounds = 11 - Consensus Length = 385 ( orig = 389 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time -- Refining Family R=1024 / 792 ( RS Elements: 20, Using 20 ): - numRounds = 5 - Consensus Length = 824 ( orig = 824 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=543 / 793 ( RS Elements: 20, Using 20 ): - numRounds = 5 - Consensus Length = 250 ( orig = 250 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1054 / 794 ( RS Elements: 20, Using 20 ): - numRounds = 4 - Consensus Length = 140 ( orig = 140 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1617 / 795 ( RS Elements: 20, Using 20 ): - numRounds = 4 - Consensus Length = 244 ( orig = 243 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1815 / 796 ( RS Elements: 20, Using 20 ): - numRounds = 4 - Consensus Length = 142 ( orig = 142 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=993 / 797 ( RS Elements: 20, Using 20 ): - numRounds = 4 - Consensus Length = 135 ( orig = 135 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1104 / 798 ( RS Elements: 20, Using 20 ): - numRounds = 4 - Consensus Length = 166 ( orig = 166 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1694 / 799 ( RS Elements: 20, Using 20 ): - numRounds = 4 - Consensus Length = 137 ( orig = 137 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1660 / 800 ( RS Elements: 20, Using 20 ): - numRounds = 4 - Consensus Length = 177 ( orig = 177 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=877 / 801 ( RS Elements: 20, Using 20 ): - numRounds = 4 - Consensus Length = 93 ( orig = 93 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time -- Refining Family R=841 / 802 ( RS Elements: 20, Using 20 ): - numRounds = 6 - Consensus Length = 500 ( orig = 500 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=690 / 803 ( RS Elements: 20, Using 20 ): - numRounds = 4 - Consensus Length = 266 ( orig = 266 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=384 / 804 ( RS Elements: 20, Using 20 ): - numRounds = 4 - Consensus Length = 170 ( orig = 170 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=851 / 805 ( RS Elements: 20, Using 20 ): - numRounds = 4 - Consensus Length = 77 ( orig = 77 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1312 / 806 ( RS Elements: 20, Using 20 ): - numRounds = 4 - Consensus Length = 263 ( orig = 263 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1212 / 807 ( RS Elements: 20, Using 20 ): - numRounds = 4 - Consensus Length = 72 ( orig = 72 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=361 / 808 ( RS Elements: 20, Using 20 ): - numRounds = 4 - Consensus Length = 128 ( orig = 128 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=985 / 809 ( RS Elements: 20, Using 20 ): - numRounds = 5 - Consensus Length = 306 ( orig = 312 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=852 / 810 ( RS Elements: 20, Using 20 ): - numRounds = 4 - Consensus Length = 54 ( orig = 54 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=512 / 811 ( RS Elements: 20, Using 20 ): - numRounds = 6 - Consensus Length = 101 ( orig = 101 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=342 / 812 ( RS Elements: 19, Using 19 ): - numRounds = 5 - Consensus Length = 317 ( orig = 317 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1298 / 813 ( RS Elements: 19, Using 19 ): - numRounds = 6 - Consensus Length = 124 ( orig = 124 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1273 / 814 ( RS Elements: 19, Using 19 ): - numRounds = 5 - Consensus Length = 414 ( orig = 414 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=451 / 815 ( RS Elements: 19, Using 19 ): - numRounds = 4 - Consensus Length = 266 ( orig = 266 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=434 / 816 ( RS Elements: 19, Using 19 ): - numRounds = 4 - Consensus Length = 335 ( orig = 335 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1473 / 817 ( RS Elements: 19, Using 19 ): - numRounds = 4 - Consensus Length = 110 ( orig = 110 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time -- Refining Family R=1301 / 818 ( RS Elements: 19, Using 19 ): - numRounds = 4 - Consensus Length = 423 ( orig = 423 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=708 / 819 ( RS Elements: 19, Using 19 ): - numRounds = 4 - Consensus Length = 226 ( orig = 226 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1018 / 820 ( RS Elements: 19, Using 19 ): - numRounds = 5 - Consensus Length = 376 ( orig = 375 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=731 / 821 ( RS Elements: 19, Using 19 ): - numRounds = 5 - Consensus Length = 275 ( orig = 275 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=757 / 822 ( RS Elements: 19, Using 19 ): - numRounds = 5 - Consensus Length = 94 ( orig = 94 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1276 / 823 ( RS Elements: 19, Using 19 ): - numRounds = 4 - Consensus Length = 159 ( orig = 159 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=797 / 824 ( RS Elements: 19, Using 19 ): - numRounds = 5 - Consensus Length = 306 ( orig = 304 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1171 / 825 ( RS Elements: 19, Using 19 ): - numRounds = 4 - Consensus Length = 153 ( orig = 153 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1845 / 826 ( RS Elements: 19, Using 19 ): - numRounds = 4 - Consensus Length = 237 ( orig = 236 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=195 / 827 ( RS Elements: 19, Using 19 ): - numRounds = 4 - Consensus Length = 458 ( orig = 458 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=369 / 828 ( RS Elements: 19, Using 19 ): - numRounds = 4 - Consensus Length = 143 ( orig = 143 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1846 / 829 ( RS Elements: 19, Using 19 ): - numRounds = 5 - Consensus Length = 366 ( orig = 366 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=606 / 830 ( RS Elements: 18, Using 18 ): - numRounds = 5 - Consensus Length = 1680 ( orig = 1698 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1347 / 831 ( RS Elements: 18, Using 18 ): - numRounds = 6 - Consensus Length = 252 ( orig = 252 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=217 / 832 ( RS Elements: 18, Using 18 ): - numRounds = 4 - Consensus Length = 82 ( orig = 82 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=523 / 833 ( RS Elements: 18, Using 18 ): - numRounds = 4 - Consensus Length = 232 ( orig = 232 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=605 / 834 ( RS Elements: 18, Using 18 ): - numRounds = 4 - Consensus Length = 81 ( orig = 81 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time -- Refining Family R=849 / 835 ( RS Elements: 18, Using 18 ): - numRounds = 4 - Consensus Length = 142 ( orig = 142 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1764 / 836 ( RS Elements: 18, Using 18 ): - numRounds = 4 - Consensus Length = 108 ( orig = 109 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=457 / 837 ( RS Elements: 18, Using 18 ): - numRounds = 4 - Consensus Length = 323 ( orig = 323 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1228 / 838 ( RS Elements: 18, Using 18 ): - numRounds = 5 - Consensus Length = 572 ( orig = 572 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1569 / 839 ( RS Elements: 18, Using 18 ): - numRounds = 5 - Consensus Length = 207 ( orig = 207 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1089 / 840 ( RS Elements: 18, Using 18 ): - numRounds = 4 - Consensus Length = 133 ( orig = 133 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=816 / 841 ( RS Elements: 18, Using 18 ): - numRounds = 7 - Consensus Length = 215 ( orig = 215 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=682 / 842 ( RS Elements: 18, Using 18 ): - numRounds = 5 - Consensus Length = 204 ( orig = 205 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1154 / 843 ( RS Elements: 18, Using 18 ): - numRounds = 6 - Consensus Length = 795 ( orig = 794 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1729 / 844 ( RS Elements: 18, Using 18 ): - numRounds = 4 - Consensus Length = 89 ( orig = 89 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time -- Refining Family R=375 / 845 ( RS Elements: 18, Using 18 ): - numRounds = 5 - Consensus Length = 642 ( orig = 642 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=413 / 846 ( RS Elements: 18, Using 18 ): - numRounds = 4 - Consensus Length = 156 ( orig = 156 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1385 / 847 ( RS Elements: 18, Using 18 ): - numRounds = 5 - Consensus Length = 247 ( orig = 250 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1651 / 848 ( RS Elements: 18, Using 18 ): - numRounds = 4 - Consensus Length = 56 ( orig = 56 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time -- Refining Family R=1069 / 849 ( RS Elements: 18, Using 18 ): - numRounds = 4 - Consensus Length = 123 ( orig = 123 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=653 / 850 ( RS Elements: 18, Using 18 ): - numRounds = 4 - Consensus Length = 94 ( orig = 94 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1013 / 851 ( RS Elements: 18, Using 18 ): - numRounds = 4 - Consensus Length = 286 ( orig = 286 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=908 / 852 ( RS Elements: 18, Using 18 ): - numRounds = 4 - Consensus Length = 91 ( orig = 91 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1368 / 853 ( RS Elements: 17, Using 17 ): - numRounds = 5 - Consensus Length = 70 ( orig = 70 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=687 / 854 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 67 ( orig = 67 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time -- Refining Family R=1199 / 855 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 145 ( orig = 145 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=535 / 856 ( RS Elements: 17, Using 17 ): - numRounds = 5 - Consensus Length = 456 ( orig = 453 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1365 / 857 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 152 ( orig = 152 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=721 / 858 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 183 ( orig = 183 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=907 / 859 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 279 ( orig = 279 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=926 / 860 ( RS Elements: 17, Using 17 ): - numRounds = 6 - Consensus Length = 199 ( orig = 199 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=928 / 861 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 115 ( orig = 115 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=784 / 862 ( RS Elements: 17, Using 17 ): - numRounds = 6 - Consensus Length = 317 ( orig = 320 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=556 / 863 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 241 ( orig = 241 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=637 / 864 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 230 ( orig = 230 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1366 / 865 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 65 ( orig = 65 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1111 / 866 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 165 ( orig = 165 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time -- Refining Family R=722 / 867 ( RS Elements: 17, Using 17 ): - numRounds = 5 - Consensus Length = 658 ( orig = 657 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time -- Refining Family R=1119 / 868 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 349 ( orig = 349 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1662 / 869 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 78 ( orig = 78 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=725 / 870 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 289 ( orig = 289 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1238 / 871 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 286 ( orig = 286 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1935 / 872 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 80 ( orig = 80 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=569 / 873 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 64 ( orig = 64 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time -- Refining Family R=1372 / 874 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 148 ( orig = 148 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=730 / 875 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 502 ( orig = 504 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1916 / 876 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 53 ( orig = 53 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time -- Refining Family R=691 / 877 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 161 ( orig = 161 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1445 / 878 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 116 ( orig = 116 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1489 / 879 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 59 ( orig = 59 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1278 / 880 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 78 ( orig = 78 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time -- Refining Family R=557 / 881 ( RS Elements: 17, Using 17 ): - numRounds = 4 - Consensus Length = 122 ( orig = 122 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1441 / 882 ( RS Elements: 16, Using 16 ): - numRounds = 4 - Consensus Length = 88 ( orig = 88 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1290 / 883 ( RS Elements: 16, Using 16 ): - numRounds = 4 - Consensus Length = 76 ( orig = 76 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=621 / 884 ( RS Elements: 16, Using 16 ): - numRounds = 4 - Consensus Length = 99 ( orig = 99 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time -- Refining Family R=920 / 885 ( RS Elements: 16, Using 16 ): - numRounds = 5 - Consensus Length = 745 ( orig = 745 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1309 / 886 ( RS Elements: 16, Using 16 ): - numRounds = 6 - Consensus Length = 281 ( orig = 281 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1808 / 887 ( RS Elements: 16, Using 16 ): - numRounds = 6 - Consensus Length = 150 ( orig = 150 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=625 / 888 ( RS Elements: 16, Using 16 ): - numRounds = 4 - Consensus Length = 64 ( orig = 64 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time -- Refining Family R=1533 / 889 ( RS Elements: 16, Using 16 ): - numRounds = 6 - Consensus Length = 272 ( orig = 272 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=1630 / 890 ( RS Elements: 16, Using 16 ): - numRounds = 4 - Consensus Length = 107 ( orig = 107 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1707 / 891 ( RS Elements: 16, Using 16 ): - numRounds = 4 - Consensus Length = 54 ( orig = 54 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time -- Refining Family R=1594 / 892 ( RS Elements: 16, Using 16 ): - numRounds = 4 - Consensus Length = 156 ( orig = 156 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1671 / 893 ( RS Elements: 16, Using 16 ): - numRounds = 4 - Consensus Length = 54 ( orig = 54 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=284 / 894 ( RS Elements: 16, Using 16 ): - numRounds = 4 - Consensus Length = 286 ( orig = 286 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1006 / 895 ( RS Elements: 16, Using 16 ): - numRounds = 4 - Consensus Length = 87 ( orig = 87 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=680 / 896 ( RS Elements: 16, Using 16 ): - numRounds = 4 - Consensus Length = 156 ( orig = 156 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time -- Refining Family R=750 / 897 ( RS Elements: 16, Using 16 ): - numRounds = 4 - Consensus Length = 70 ( orig = 70 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=890 / 898 ( RS Elements: 16, Using 16 ): - numRounds = 7 - Consensus Length = 250 ( orig = 249 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=429 / 899 ( RS Elements: 16, Using 16 ): - numRounds = 4 - Consensus Length = 262 ( orig = 262 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=592 / 900 ( RS Elements: 16, Using 16 ): - numRounds = 4 - Consensus Length = 63 ( orig = 63 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1767 / 901 ( RS Elements: 16, Using 16 ): - numRounds = 5 - Consensus Length = 237 ( orig = 237 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1322 / 902 ( RS Elements: 16, Using 16 ): - numRounds = 7 - Consensus Length = 286 ( orig = 286 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1608 / 903 ( RS Elements: 16, Using 16 ): - numRounds = 6 - Consensus Length = 235 ( orig = 235 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time -- Refining Family R=678 / 904 ( RS Elements: 16, Using 16 ): - numRounds = 4 - Consensus Length = 247 ( orig = 247 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1430 / 905 ( RS Elements: 16, Using 16 ): - numRounds = 4 - Consensus Length = 214 ( orig = 216 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time -- Refining Family R=696 / 906 ( RS Elements: 16, Using 16 ): - numRounds = 4 - Consensus Length = 77 ( orig = 77 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=297 / 907 ( RS Elements: 16, Using 16 ): - numRounds = 4 - Consensus Length = 228 ( orig = 228 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=541 / 908 ( RS Elements: 16, Using 16 ): - numRounds = 4 - Consensus Length = 157 ( orig = 157 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=1688 / 909 ( RS Elements: 16, Using 16 ): - numRounds = 4 - Consensus Length = 55 ( orig = 55 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time -- Refining Family R=662 / 910 ( RS Elements: 16, Using 16 ): - numRounds = 3 - Consensus Length = 57 ( orig = 57 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time Family Refinement: 02:07:38 (hh:mm:ss) Elapsed Time RepeatModeler Round # 2 ======================== Searching for Repeats -- Sampling from the database... - Gathering up to 3000000 bp -- Running TRFMask on the sequence... 1092 Tandem Repeats Masked -- Masking repeats from the previous rounds... - Masking 1 - 5 of 87 - Masking 16 - 30 of 87 - Masking 41 - 65 of 87 - Masking 76 - 87 of 87 -- Sample Stats: Sample Size 3480232 bp Num Contigs Represented = 18 Non ambiguous bp: Initial: 3009643 bp After Masking: 2092307 bp Masked: 30.48 % -- Input Database Coverage: 3480232 bp out of 942353201 bp ( 0.37 % ) Sampling Time: 00:01:22 (hh:mm:ss) Elapsed Time Running all-by-other comparisons... 2% completed, 00:1:36 (hh:mm:ss) est. time remaining. 4% completed, 00:5:47 (hh:mm:ss) est. time remaining. 6% completed, 00:4:09 (hh:mm:ss) est. time remaining. 8% completed, 00:3:18 (hh:mm:ss) est. time remaining. 10% completed, 00:2:47 (hh:mm:ss) est. time remaining. 12% completed, 00:2:20 (hh:mm:ss) est. time remaining. 14% completed, 00:2:03 (hh:mm:ss) est. time remaining. 16% completed, 00:1:44 (hh:mm:ss) est. time remaining. 18% completed, 00:1:35 (hh:mm:ss) est. time remaining. 20% completed, 00:1:22 (hh:mm:ss) est. time remaining. 23% completed, 00:1:13 (hh:mm:ss) est. time remaining. 25% completed, 00:1:13 (hh:mm:ss) est. time remaining. 27% completed, 00:1:07 (hh:mm:ss) est. time remaining. 29% completed, 00:1:00 (hh:mm:ss) est. time remaining. 31% completed, 00:0:57 (hh:mm:ss) est. time remaining. 33% completed, 00:0:54 (hh:mm:ss) est. time remaining. 35% completed, 00:0:51 (hh:mm:ss) est. time remaining. 37% completed, 00:0:47 (hh:mm:ss) est. time remaining. 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(hh:mm:ss) est. time remaining. 97% completed, 00:0:01 (hh:mm:ss) est. time remaining. 97% completed, 00:0:01 (hh:mm:ss) est. time remaining. 97% completed, 00:0:01 (hh:mm:ss) est. time remaining. 98% completed, 00:0:01 (hh:mm:ss) est. time remaining. 98% completed, 00:0:00 (hh:mm:ss) est. time remaining. 98% completed, 00:0:00 (hh:mm:ss) est. time remaining. 98% completed, 00:0:00 (hh:mm:ss) est. time remaining. 99% completed, 00:0:00 (hh:mm:ss) est. time remaining. 99% completed, 00:0:00 (hh:mm:ss) est. time remaining. 99% completed, 00:0:00 (hh:mm:ss) est. time remaining. 99% completed, 00:0:00 (hh:mm:ss) est. time remaining. 99% completed, 00:0:00 (hh:mm:ss) est. time remaining. 100% completed, 00:0:00 (hh:mm:ss) est. time remaining. Comparison Time: 00:01:00 (hh:mm:ss) Elapsed Time, 10742 HSPs Collected - RECON: Running imagespread.. RECON Elapsed: 00:00:00 (hh:mm:ss) Elapsed Time - RECON: Running initial definition of elements ( eledef ).. RECON Elapsed: 00:00:00 (hh:mm:ss) Elapsed Time - RECON: Running re-definition of elements ( eleredef ).. RECON Elapsed: 00:00:03 (hh:mm:ss) Elapsed Time - RECON: Running re-definition of edges ( edgeredef ).. RECON Elapsed: 00:00:02 (hh:mm:ss) Elapsed Time - RECON: Running family definition ( famdef ).. RECON Elapsed: 00:00:00 (hh:mm:ss) Elapsed Time - Obtaining element sequences Number of families returned by RECON: 597 Processing families with greater than 15 elements Processing RECON family: 75 - Saving elements to a file... - 41 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-75 model... - numRounds = 5 - Consensus Length = 339 ( orig = 340 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 5 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 30 - Saving elements to a file... - 39 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-30 model... - numRounds = 8 - Consensus Length = 524 ( orig = 523 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 118 - Saving elements to a file... - 36 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-118 model... - numRounds = 4 - Consensus Length = 300 ( orig = 300 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 48 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-48 model... - numRounds = 7 - Consensus Length = 546 ( orig = 548 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 3 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 53 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-53 model... - numRounds = 4 - Consensus Length = 429 ( orig = 429 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 6 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 114 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-114 model... - numRounds = 10 - Consensus Length = 1837 ( orig = 1854 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 63 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-63 model... - numRounds = 7 - Consensus Length = 228 ( orig = 220 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 27 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-27 model... - numRounds = 7 - Consensus Length = 617 ( orig = 616 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 77 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-77 model... - numRounds = 5 - Consensus Length = 468 ( orig = 468 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 7 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-7 model... - numRounds = 5 - Consensus Length = 258 ( orig = 258 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 37 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-37 model... - numRounds = 5 - Consensus Length = 235 ( orig = 234 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 74 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-74 model... - numRounds = 5 - Consensus Length = 459 ( orig = 460 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Family Refinement: 00:00:32 (hh:mm:ss) Elapsed Time Round Time: 00:02:59 (hh:mm:ss) Elapsed Time RepeatModeler Round # 3 ======================== Searching for Repeats -- Sampling from the database... - Gathering up to 9000000 bp -- Running TRFMask on the sequence... 2900 Tandem Repeats Masked -- Masking repeats from the previous rounds... - Masking 1 - 5 of 273 - Masking 16 - 30 of 273 - Masking 41 - 65 of 273 - Masking 76 - 110 of 273 - Masking 121 - 165 of 273 - Masking 176 - 230 of 273 - Masking 241 - 273 of 273 -- Sample Stats: Sample Size 10920882 bp Num Contigs Represented = 18 Non ambiguous bp: Initial: 9035073 bp After Masking: 6049468 bp Masked: 33.04 % -- Input Database Coverage: 14401114 bp out of 942353201 bp ( 1.53 % ) Sampling Time: 00:04:29 (hh:mm:ss) Elapsed Time Running all-by-other comparisons... 0% completed, 00:54:34 (hh:mm:ss) est. time remaining. 1% completed, 00:49:29 (hh:mm:ss) est. time remaining. 2% completed, 00:39:27 (hh:mm:ss) est. time remaining. 2% completed, 00:34:53 (hh:mm:ss) est. time remaining. 3% completed, 00:29:49 (hh:mm:ss) est. time remaining. 4% completed, 00:24:49 (hh:mm:ss) est. time remaining. 5% completed, 00:22:39 (hh:mm:ss) est. time remaining. 5% completed, 00:19:46 (hh:mm:ss) est. time remaining. 6% completed, 00:17:43 (hh:mm:ss) est. time remaining. 7% completed, 00:16:28 (hh:mm:ss) est. time remaining. 7% completed, 00:15:04 (hh:mm:ss) est. time remaining. 8% completed, 00:14:26 (hh:mm:ss) est. time remaining. 9% completed, 00:13:12 (hh:mm:ss) est. time remaining. 9% completed, 00:12:21 (hh:mm:ss) est. time remaining. 10% completed, 00:11:35 (hh:mm:ss) est. time remaining. 11% completed, 00:10:48 (hh:mm:ss) est. time remaining. 12% 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Comparison Time: 00:08:18 (hh:mm:ss) Elapsed Time, 47007 HSPs Collected - RECON: Running imagespread.. RECON Elapsed: 00:00:01 (hh:mm:ss) Elapsed Time - RECON: Running initial definition of elements ( eledef ).. RECON Elapsed: 00:00:01 (hh:mm:ss) Elapsed Time - RECON: Running re-definition of elements ( eleredef ).. RECON Elapsed: 00:00:26 (hh:mm:ss) Elapsed Time - RECON: Running re-definition of edges ( edgeredef ).. RECON Elapsed: 00:00:15 (hh:mm:ss) Elapsed Time - RECON: Running family definition ( famdef ).. RECON Elapsed: 00:00:01 (hh:mm:ss) Elapsed Time - Obtaining element sequences Number of families returned by RECON: 2170 Processing families with greater than 15 elements Processing RECON family: 345 - Saving elements to a file... - 39 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-345 model... - numRounds = 4 - Consensus Length = 423 ( orig = 423 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 5 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 308 - Saving elements to a file... - 39 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-308 model... - numRounds = 5 - Consensus Length = 308 ( orig = 307 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 864 - Saving elements to a file... - 34 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-864 model... - numRounds = 7 - Consensus Length = 842 ( orig = 809 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 62 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:01 (hh:mm:ss) Elapsed Time Refining family-62 model... - numRounds = 10 - Consensus Length = 1820 ( orig = 1812 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 16 ( orig = 17 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 2059 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2059 model... - numRounds = 6 - Consensus Length = 255 ( orig = 261 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 6 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 91 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-91 model... - numRounds = 7 - Consensus Length = 639 ( orig = 639 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 234 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-234 model... - numRounds = 9 - Consensus Length = 414 ( orig = 427 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 5 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 72 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-72 model... - numRounds = 5 - Consensus Length = 229 ( orig = 228 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 5 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 104 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-104 model... - numRounds = 7 - Consensus Length = 831 ( orig = 834 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 10 ( orig = 15 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 137 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-137 model... - numRounds = 5 - Consensus Length = 148 ( orig = 148 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 5 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 172 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-172 model... - numRounds = 6 - Consensus Length = 224 ( orig = 225 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 373 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-373 model... - numRounds = 7 - Consensus Length = 801 ( orig = 807 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 134 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-134 model... - numRounds = 5 - Consensus Length = 209 ( orig = 210 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 5 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 229 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-229 model... - numRounds = 9 - Consensus Length = 748 ( orig = 754 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 6 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 585 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-585 model... - numRounds = 5 - Consensus Length = 235 ( orig = 235 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 8 ( orig = 8 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 149 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-149 model... - numRounds = 4 - Consensus Length = 74 ( orig = 75 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time Processing RECON family: 438 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-438 model... - numRounds = 6 - Consensus Length = 666 ( orig = 665 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 7 ( orig = 8 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 307 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-307 model... - numRounds = 6 - Consensus Length = 449 ( orig = 444 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 5 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 116 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-116 model... - numRounds = 6 - Consensus Length = 836 ( orig = 824 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 498 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-498 model... - numRounds = 6 - Consensus Length = 344 ( orig = 341 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 5 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 106 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-106 model... - numRounds = 9 - Consensus Length = 5234 ( orig = 5409 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 7 ( orig = 7 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time Processing RECON family: 100 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-100 model... - numRounds = 8 - Consensus Length = 862 ( orig = 860 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 911 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-911 model... - numRounds = 6 - Consensus Length = 237 ( orig = 234 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 5 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 317 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-317 model... - numRounds = 6 - Consensus Length = 744 ( orig = 743 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 479 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-479 model... - numRounds = 7 - Consensus Length = 525 ( orig = 527 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 40 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-40 model... - numRounds = 7 - Consensus Length = 250 ( orig = 251 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1086 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1086 model... - numRounds = 6 - Consensus Length = 722 ( orig = 716 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 67 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-67 model... - numRounds = 9 - Consensus Length = 233 ( orig = 234 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 6 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 145 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-145 model... - numRounds = 4 - Consensus Length = 91 ( orig = 91 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time Processing RECON family: 1016 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1016 model... - numRounds = 5 - Consensus Length = 2242 ( orig = 2280 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 6 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 998 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-998 model... - numRounds = 6 - Consensus Length = 1433 ( orig = 1416 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 544 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-544 model... - numRounds = 7 - Consensus Length = 273 ( orig = 274 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 5 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 148 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-148 model... - numRounds = 7 - Consensus Length = 328 ( orig = 321 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 200 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-200 model... - numRounds = 7 - Consensus Length = 1180 ( orig = 1180 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Family Refinement: 00:01:25 (hh:mm:ss) Elapsed Time Round Time: 00:14:57 (hh:mm:ss) Elapsed Time RepeatModeler Round # 4 ======================== Searching for Repeats -- Sampling from the database... - Gathering up to 27000000 bp -- Running TRFMask on the sequence... 8576 Tandem Repeats Masked -- Masking repeats from the previous rounds... - Masking 1 - 5 of 820 - Masking 16 - 30 of 820 - Masking 41 - 65 of 820 - Masking 76 - 110 of 820 - Masking 121 - 165 of 820 - Masking 176 - 230 of 820 - Masking 241 - 305 of 820 - Masking 316 - 390 of 820 - Masking 401 - 485 of 820 - Masking 496 - 590 of 820 - Masking 596 - 695 of 820 - Masking 696 - 795 of 820 - Masking 796 - 820 of 820 -- Sample Stats: Sample Size 32760303 bp Num Contigs Represented = 18 Non ambiguous bp: Initial: 27036025 bp After Masking: 17016685 bp Masked: 37.06 % -- Input Database Coverage: 47161417 bp out of 942353201 bp ( 5.00 % ) Sampling Time: 00:15:45 (hh:mm:ss) Elapsed Time Running all-by-other comparisons... 0% completed, 13:18:31 (hh:mm:ss) est. time remaining. 0% completed, 06:45:20 (hh:mm:ss) est. time remaining. 0% completed, 05:10:32 (hh:mm:ss) est. time remaining. 0% completed, 03:55:34 (hh:mm:ss) est. time remaining. 1% completed, 03:8:32 (hh:mm:ss) est. time remaining. 1% completed, 02:39:15 (hh:mm:ss) est. time remaining. 1% completed, 02:33:50 (hh:mm:ss) est. time remaining. 1% completed, 02:27:08 (hh:mm:ss) est. time remaining. 2% completed, 02:13:24 (hh:mm:ss) est. time remaining. 2% completed, 02:22:08 (hh:mm:ss) est. time remaining. 2% completed, 02:10:44 (hh:mm:ss) est. time remaining. 2% completed, 02:0:53 (hh:mm:ss) est. time remaining. 3% completed, 02:2:14 (hh:mm:ss) est. time remaining. 3% 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Comparison Time: 01:08:31 (hh:mm:ss) Elapsed Time, 178265 HSPs Collected - RECON: Running imagespread.. RECON Elapsed: 00:00:00 (hh:mm:ss) Elapsed Time - RECON: Running initial definition of elements ( eledef ).. RECON Elapsed: 00:00:04 (hh:mm:ss) Elapsed Time - RECON: Running re-definition of elements ( eleredef ).. RECON Elapsed: 00:02:56 (hh:mm:ss) Elapsed Time - RECON: Running re-definition of edges ( edgeredef ).. RECON Elapsed: 00:01:43 (hh:mm:ss) Elapsed Time - RECON: Running family definition ( famdef ).. RECON Elapsed: 00:00:02 (hh:mm:ss) Elapsed Time - Obtaining element sequences Number of families returned by RECON: 5881 Processing families with greater than 15 elements Processing RECON family: 28 - Saving elements to a file... - 162 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-28 model... - numRounds = 7 - Consensus Length = 345 ( orig = 350 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 40 ( orig = 65 ) Build Consensus: 0:0:16 Elapsed Time Refinement: 00:00:16 (hh:mm:ss) Elapsed Time Processing RECON family: 69 - Saving elements to a file... - 96 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-69 model... - numRounds = 5 - Consensus Length = 1472 ( orig = 1491 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 7 ( orig = 26 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 702 - Saving elements to a file... - 59 elements found. Element Gathering: 00:00:01 (hh:mm:ss) Elapsed Time Refining family-702 model... - numRounds = 6 - Consensus Length = 825 ( orig = 840 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 10 ) Build Consensus: 0:0:14 Elapsed Time Refinement: 00:00:14 (hh:mm:ss) Elapsed Time Processing RECON family: 1607 - Saving elements to a file... - 54 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1607 model... - numRounds = 5 - Consensus Length = 428 ( orig = 422 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 4 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 148 - Saving elements to a file... - 50 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-148 model... - numRounds = 5 - Consensus Length = 147 ( orig = 147 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1632 - Saving elements to a file... - 50 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1632 model... - numRounds = 5 - Consensus Length = 601 ( orig = 591 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 9 ( orig = 16 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 312 - Saving elements to a file... - 50 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-312 model... - numRounds = 7 - Consensus Length = 245 ( orig = 246 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 9 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 853 - Saving elements to a file... - 46 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-853 model... - numRounds = 5 - Consensus Length = 246 ( orig = 248 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2332 - Saving elements to a file... - 45 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2332 model... - numRounds = 6 - Consensus Length = 218 ( orig = 220 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 7 ( orig = 8 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 10 - Saving elements to a file... - 45 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-10 model... - numRounds = 7 - Consensus Length = 441 ( orig = 428 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 20 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 832 - Saving elements to a file... - 45 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-832 model... - numRounds = 4 - Consensus Length = 215 ( orig = 215 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 6 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 164 - Saving elements to a file... - 40 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-164 model... - numRounds = 6 - Consensus Length = 590 ( orig = 582 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 8 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 335 - Saving elements to a file... - 39 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-335 model... - numRounds = 5 - Consensus Length = 507 ( orig = 506 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 7 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 11 - Saving elements to a file... - 38 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-11 model... - numRounds = 7 - Consensus Length = 392 ( orig = 394 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 7 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 620 - Saving elements to a file... - 37 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-620 model... - numRounds = 5 - Consensus Length = 703 ( orig = 692 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 4 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 955 - Saving elements to a file... - 37 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-955 model... - numRounds = 6 - Consensus Length = 161 ( orig = 162 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 10 ( orig = 11 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 446 - Saving elements to a file... - 37 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-446 model... - numRounds = 6 - Consensus Length = 537 ( orig = 533 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 6 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1502 - Saving elements to a file... - 37 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1502 model... - numRounds = 11 - Consensus Length = 502 ( orig = 507 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 4 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time Processing RECON family: 2476 - Saving elements to a file... - 36 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2476 model... - numRounds = 4 - Consensus Length = 84 ( orig = 84 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1493 - Saving elements to a file... - 36 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1493 model... - numRounds = 4 - Consensus Length = 104 ( orig = 104 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 9 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 958 - Saving elements to a file... - 35 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-958 model... - numRounds = 5 - Consensus Length = 105 ( orig = 105 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 8 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 310 - Saving elements to a file... - 35 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-310 model... - numRounds = 11 - Consensus Length = 539 ( orig = 544 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 1 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 926 - Saving elements to a file... - 35 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-926 model... - numRounds = 5 - Consensus Length = 159 ( orig = 160 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1613 - Saving elements to a file... - 34 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1613 model... - numRounds = 8 - Consensus Length = 518 ( orig = 524 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 12 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1480 - Saving elements to a file... - 34 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1480 model... - numRounds = 5 - Consensus Length = 465 ( orig = 466 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 5 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 835 - Saving elements to a file... - 33 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-835 model... - numRounds = 4 - Consensus Length = 60 ( orig = 60 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 416 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-416 model... - numRounds = 8 - Consensus Length = 341 ( orig = 351 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 8 ( orig = 10 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1759 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1759 model... - numRounds = 11 - Consensus Length = 808 ( orig = 806 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 6 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 202 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-202 model... - numRounds = 5 - Consensus Length = 271 ( orig = 274 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 174 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-174 model... - numRounds = 5 - Consensus Length = 274 ( orig = 273 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1947 - Saving elements to a file... - 31 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1947 model... - numRounds = 10 - Consensus Length = 577 ( orig = 578 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 155 - Saving elements to a file... - 31 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-155 model... - numRounds = 8 - Consensus Length = 1707 ( orig = 1704 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 11 ( orig = 12 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 957 - Saving elements to a file... - 31 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-957 model... - numRounds = 5 - Consensus Length = 131 ( orig = 131 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 399 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-399 model... - numRounds = 6 - Consensus Length = 772 ( orig = 788 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 6 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 319 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-319 model... - numRounds = 11 - Consensus Length = 853 ( orig = 854 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time Processing RECON family: 1633 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1633 model... - numRounds = 6 - Consensus Length = 357 ( orig = 343 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 54 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-54 model... - numRounds = 8 - Consensus Length = 484 ( orig = 488 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 2541 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2541 model... - numRounds = 9 - Consensus Length = 916 ( orig = 922 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 4 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2095 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2095 model... - numRounds = 5 - Consensus Length = 477 ( orig = 478 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 553 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-553 model... - numRounds = 5 - Consensus Length = 264 ( orig = 264 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 5 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 501 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-501 model... - numRounds = 5 - Consensus Length = 393 ( orig = 395 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 86 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-86 model... - numRounds = 5 - Consensus Length = 403 ( orig = 399 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1465 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1465 model... - numRounds = 5 - Consensus Length = 470 ( orig = 470 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3347 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3347 model... - numRounds = 4 - Consensus Length = 57 ( orig = 57 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 2 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 525 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-525 model... - numRounds = 6 - Consensus Length = 229 ( orig = 237 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 479 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-479 model... - numRounds = 6 - Consensus Length = 268 ( orig = 270 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 767 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-767 model... - numRounds = 7 - Consensus Length = 2891 ( orig = 2893 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 3 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 1124 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1124 model... - numRounds = 5 - Consensus Length = 304 ( orig = 305 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1415 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1415 model... - numRounds = 7 - Consensus Length = 565 ( orig = 561 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 6 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2833 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2833 model... - numRounds = 8 - Consensus Length = 1555 ( orig = 1557 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 125 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-125 model... - numRounds = 5 - Consensus Length = 345 ( orig = 345 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2 model... - numRounds = 7 - Consensus Length = 2803 ( orig = 2812 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 6 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 931 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-931 model... - numRounds = 9 - Consensus Length = 332 ( orig = 340 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 703 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-703 model... - numRounds = 6 - Consensus Length = 200 ( orig = 200 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1986 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1986 model... - numRounds = 7 - Consensus Length = 681 ( orig = 681 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 262 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-262 model... - numRounds = 6 - Consensus Length = 1335 ( orig = 1328 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 5 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 412 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-412 model... - numRounds = 11 - Consensus Length = 682 ( orig = 689 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 5 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 963 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-963 model... - numRounds = 6 - Consensus Length = 306 ( orig = 307 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1177 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1177 model... - numRounds = 7 - Consensus Length = 134 ( orig = 134 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 535 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-535 model... - numRounds = 11 - Consensus Length = 780 ( orig = 776 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 1223 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1223 model... - numRounds = 10 - Consensus Length = 860 ( orig = 856 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 166 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-166 model... - numRounds = 8 - Consensus Length = 712 ( orig = 718 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1963 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1963 model... - numRounds = 11 - Consensus Length = 1689 ( orig = 1717 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 9 ( orig = 9 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 179 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-179 model... - numRounds = 6 - Consensus Length = 654 ( orig = 630 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2062 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2062 model... - numRounds = 5 - Consensus Length = 1043 ( orig = 1043 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 211 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-211 model... - numRounds = 11 - Consensus Length = 1402 ( orig = 1400 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 7 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 197 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-197 model... - numRounds = 5 - Consensus Length = 179 ( orig = 177 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 30 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-30 model... - numRounds = 5 - Consensus Length = 629 ( orig = 625 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1190 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1190 model... - numRounds = 6 - Consensus Length = 683 ( orig = 701 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 609 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-609 model... - numRounds = 6 - Consensus Length = 910 ( orig = 918 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 961 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-961 model... - numRounds = 5 - Consensus Length = 1193 ( orig = 1178 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 812 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-812 model... - numRounds = 4 - Consensus Length = 198 ( orig = 194 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1615 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1615 model... - numRounds = 8 - Consensus Length = 1174 ( orig = 1129 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 61 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-61 model... - numRounds = 8 - Consensus Length = 2137 ( orig = 2153 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 5 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 1024 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1024 model... - numRounds = 6 - Consensus Length = 75 ( orig = 75 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2390 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2390 model... - numRounds = 7 - Consensus Length = 1330 ( orig = 1336 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1039 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1039 model... - numRounds = 6 - Consensus Length = 1162 ( orig = 1204 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 722 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-722 model... - numRounds = 5 - Consensus Length = 458 ( orig = 461 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 7 ( orig = 12 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 305 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-305 model... - numRounds = 7 - Consensus Length = 1607 ( orig = 1622 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2117 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2117 model... - numRounds = 5 - Consensus Length = 363 ( orig = 365 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 259 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-259 model... - numRounds = 6 - Consensus Length = 1775 ( orig = 1780 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 5 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 490 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-490 model... - numRounds = 6 - Consensus Length = 276 ( orig = 273 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 407 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-407 model... - numRounds = 8 - Consensus Length = 197 ( orig = 195 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 8 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 217 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-217 model... - numRounds = 5 - Consensus Length = 410 ( orig = 410 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1907 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1907 model... - numRounds = 7 - Consensus Length = 670 ( orig = 680 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 9 ( orig = 9 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 55 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:01 (hh:mm:ss) Elapsed Time Refining family-55 model... - numRounds = 10 - Consensus Length = 1698 ( orig = 1719 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 1033 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1033 model... - numRounds = 7 - Consensus Length = 388 ( orig = 379 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 758 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-758 model... - numRounds = 7 - Consensus Length = 1103 ( orig = 1074 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 6 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 129 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-129 model... - numRounds = 11 - Consensus Length = 349 ( orig = 350 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1597 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1597 model... - numRounds = 6 - Consensus Length = 464 ( orig = 469 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 177 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-177 model... - numRounds = 7 - Consensus Length = 467 ( orig = 472 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 153 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-153 model... - numRounds = 8 - Consensus Length = 341 ( orig = 342 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1430 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1430 model... - numRounds = 5 - Consensus Length = 650 ( orig = 646 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 866 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-866 model... - numRounds = 6 - Consensus Length = 1839 ( orig = 1828 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 131 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-131 model... - numRounds = 8 - Consensus Length = 468 ( orig = 470 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 8 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 321 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-321 model... - numRounds = 6 - Consensus Length = 322 ( orig = 326 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 345 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-345 model... - numRounds = 9 - Consensus Length = 1686 ( orig = 1736 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 746 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-746 model... - numRounds = 6 - Consensus Length = 475 ( orig = 474 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2135 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2135 model... - numRounds = 7 - Consensus Length = 2435 ( orig = 2427 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 35 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-35 model... - numRounds = 6 - Consensus Length = 360 ( orig = 358 ) - Avg Kimura Divergence = 0.02 - Unaligned sequences = 7 ( orig = 10 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1171 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1171 model... - numRounds = 6 - Consensus Length = 500 ( orig = 500 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 73 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-73 model... - numRounds = 6 - Consensus Length = 320 ( orig = 324 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 834 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-834 model... - numRounds = 5 - Consensus Length = 76 ( orig = 79 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1852 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1852 model... - numRounds = 9 - Consensus Length = 485 ( orig = 490 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1036 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1036 model... - numRounds = 7 - Consensus Length = 472 ( orig = 473 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2018 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2018 model... - numRounds = 4 - Consensus Length = 57 ( orig = 57 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time Processing RECON family: 773 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-773 model... - numRounds = 4 - Consensus Length = 149 ( orig = 149 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 45 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-45 model... - numRounds = 6 - Consensus Length = 347 ( orig = 351 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3144 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3144 model... - numRounds = 4 - Consensus Length = 378 ( orig = 378 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2093 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2093 model... - numRounds = 8 - Consensus Length = 1172 ( orig = 1165 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 675 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-675 model... - numRounds = 5 - Consensus Length = 213 ( orig = 204 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 5 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 502 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-502 model... - numRounds = 6 - Consensus Length = 296 ( orig = 297 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 6 ( orig = 6 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1694 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1694 model... - numRounds = 8 - Consensus Length = 694 ( orig = 701 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 5548 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5548 model... - numRounds = 5 - Consensus Length = 245 ( orig = 246 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1529 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1529 model... - numRounds = 7 - Consensus Length = 739 ( orig = 736 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4083 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4083 model... - numRounds = 7 - Consensus Length = 590 ( orig = 574 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 757 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-757 model... - numRounds = 7 - Consensus Length = 656 ( orig = 653 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 684 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-684 model... - numRounds = 5 - Consensus Length = 160 ( orig = 159 ) - Avg Kimura Divergence = 0.02 - Unaligned sequences = 6 ( orig = 8 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 817 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-817 model... - numRounds = 7 - Consensus Length = 230 ( orig = 225 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1805 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1805 model... - numRounds = 6 - Consensus Length = 331 ( orig = 330 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 536 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-536 model... - numRounds = 7 - Consensus Length = 2029 ( orig = 2013 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2019 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2019 model... - numRounds = 4 - Consensus Length = 41 ( orig = 41 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time Processing RECON family: 1596 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1596 model... - numRounds = 4 - Consensus Length = 78 ( orig = 78 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1706 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1706 model... - numRounds = 6 - Consensus Length = 391 ( orig = 389 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 84 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-84 model... - numRounds = 11 - Consensus Length = 1879 ( orig = 1825 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 2130 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2130 model... - numRounds = 6 - Consensus Length = 990 ( orig = 990 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 5 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2172 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2172 model... - numRounds = 8 - Consensus Length = 809 ( orig = 811 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1047 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1047 model... - numRounds = 6 - Consensus Length = 457 ( orig = 466 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 5 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 343 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-343 model... - numRounds = 9 - Consensus Length = 1068 ( orig = 1083 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 8 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3377 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3377 model... - numRounds = 6 - Consensus Length = 427 ( orig = 429 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 144 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-144 model... - numRounds = 5 - Consensus Length = 325 ( orig = 333 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 800 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-800 model... - numRounds = 6 - Consensus Length = 1245 ( orig = 1287 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 138 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-138 model... - numRounds = 7 - Consensus Length = 1096 ( orig = 1087 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 128 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-128 model... - numRounds = 6 - Consensus Length = 368 ( orig = 371 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Family Refinement: 00:06:33 (hh:mm:ss) Elapsed Time Round Time: 01:35:38 (hh:mm:ss) Elapsed Time RepeatModeler Round # 5 ======================== Searching for Repeats -- Sampling from the database... - Gathering up to 81000000 bp -- Running TRFMask on the sequence... 25481 Tandem Repeats Masked -- Masking repeats from the previous rounds... - Masking 1 - 5 of 2426 - Masking 16 - 30 of 2426 - Masking 41 - 65 of 2426 - Masking 76 - 110 of 2426 - Masking 121 - 165 of 2426 - Masking 176 - 230 of 2426 - Masking 241 - 305 of 2426 - Masking 316 - 390 of 2426 - Masking 401 - 485 of 2426 - Masking 496 - 590 of 2426 - Masking 596 - 695 of 2426 - Masking 696 - 795 of 2426 - Masking 796 - 895 of 2426 - Masking 896 - 995 of 2426 - Masking 996 - 1095 of 2426 - Masking 1096 - 1195 of 2426 - Masking 1196 - 1295 of 2426 - Masking 1296 - 1395 of 2426 - Masking 1396 - 1495 of 2426 - Masking 1496 - 1595 of 2426 - Masking 1596 - 1695 of 2426 - Masking 1696 - 1795 of 2426 - Masking 1796 - 1895 of 2426 - Masking 1896 - 1995 of 2426 - Masking 1996 - 2095 of 2426 - Masking 2096 - 2195 of 2426 - Masking 2196 - 2295 of 2426 - Masking 2296 - 2395 of 2426 - Masking 2396 - 2426 of 2426 -- Sample Stats: Sample Size 96929912 bp Num Contigs Represented = 18 Non ambiguous bp: Initial: 81024134 bp After Masking: 47752885 bp Masked: 41.06 % -- Input Database Coverage: 144091329 bp out of 942353201 bp ( 15.29 % ) Sampling Time: 01:05:45 (hh:mm:ss) Elapsed Time Running all-by-other comparisons... 0% completed, 00:20:13 (hh:mm:ss) est. time remaining. 0% completed, 18:22:16 (hh:mm:ss) est. time remaining. 0% completed, 36:7:32 (hh:mm:ss) est. time remaining. 0% completed, 29:11:49 (hh:mm:ss) est. time remaining. 0% 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(hh:mm:ss) est. time remaining. 99% completed, 00:0:00 (hh:mm:ss) est. time remaining. 99% completed, 00:0:00 (hh:mm:ss) est. time remaining. 100% completed, 00:0:00 (hh:mm:ss) est. time remaining. Comparison Time: 09:18:32 (hh:mm:ss) Elapsed Time, 399058 HSPs Collected - RECON: Running imagespread.. RECON Elapsed: 00:00:02 (hh:mm:ss) Elapsed Time - RECON: Running initial definition of elements ( eledef ).. RECON Elapsed: 00:00:07 (hh:mm:ss) Elapsed Time - RECON: Running re-definition of elements ( eleredef ).. RECON Elapsed: 00:06:19 (hh:mm:ss) Elapsed Time - RECON: Running re-definition of edges ( edgeredef ).. RECON Elapsed: 00:11:55 (hh:mm:ss) Elapsed Time - RECON: Running family definition ( famdef ).. RECON Elapsed: 00:00:05 (hh:mm:ss) Elapsed Time - Obtaining element sequences Number of families returned by RECON: 13649 Processing families with greater than 15 elements Processing RECON family: 449 - Saving elements to a file... - 252 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-449 model... - numRounds = 5 - Consensus Length = 125 ( orig = 125 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 22 ( orig = 87 ) Build Consensus: 0:0:14 Elapsed Time Refinement: 00:00:14 (hh:mm:ss) Elapsed Time Processing RECON family: 104 - Saving elements to a file... - 210 elements found. Element Gathering: 00:00:01 (hh:mm:ss) Elapsed Time Refining family-104 model... - numRounds = 7 - Consensus Length = 426 ( orig = 430 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 39 ( orig = 76 ) Build Consensus: 0:0:34 Elapsed Time Refinement: 00:00:34 (hh:mm:ss) Elapsed Time Processing RECON family: 147 - Saving elements to a file... - 172 elements found. Element Gathering: 00:00:01 (hh:mm:ss) Elapsed Time Refining family-147 model... - numRounds = 9 - Consensus Length = 610 ( orig = 613 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 65 ( orig = 86 ) Build Consensus: 0:0:19 Elapsed Time Refinement: 00:00:19 (hh:mm:ss) Elapsed Time Processing RECON family: 1417 - Saving elements to a file... - 126 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1417 model... - numRounds = 11 - Consensus Length = 387 ( orig = 380 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 23 ( orig = 30 ) Build Consensus: 0:0:22 Elapsed Time Refinement: 00:00:22 (hh:mm:ss) Elapsed Time Processing RECON family: 56 - Saving elements to a file... - 110 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-56 model... - numRounds = 4 - Consensus Length = 416 ( orig = 416 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 7 ( orig = 7 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time Processing RECON family: 1692 - Saving elements to a file... - 95 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1692 model... - numRounds = 7 - Consensus Length = 228 ( orig = 226 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 22 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time Processing RECON family: 855 - Saving elements to a file... - 88 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-855 model... - numRounds = 4 - Consensus Length = 59 ( orig = 59 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 7 ( orig = 9 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 845 - Saving elements to a file... - 85 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-845 model... - numRounds = 6 - Consensus Length = 739 ( orig = 740 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 17 ( orig = 28 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 3044 - Saving elements to a file... - 85 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3044 model... - numRounds = 9 - Consensus Length = 821 ( orig = 822 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 4 ) Build Consensus: 0:0:17 Elapsed Time Refinement: 00:00:17 (hh:mm:ss) Elapsed Time Processing RECON family: 1885 - Saving elements to a file... - 82 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1885 model... - numRounds = 6 - Consensus Length = 73 ( orig = 73 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 9 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 301 - Saving elements to a file... - 80 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-301 model... - numRounds = 5 - Consensus Length = 294 ( orig = 309 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 12 ( orig = 13 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 128 - Saving elements to a file... - 78 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-128 model... - numRounds = 4 - Consensus Length = 63 ( orig = 63 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 6 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 326 - Saving elements to a file... - 73 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-326 model... - numRounds = 6 - Consensus Length = 397 ( orig = 390 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 5 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time Processing RECON family: 4591 - Saving elements to a file... - 72 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4591 model... - numRounds = 5 - Consensus Length = 146 ( orig = 145 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 6 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 141 - Saving elements to a file... - 72 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-141 model... - numRounds = 6 - Consensus Length = 417 ( orig = 418 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 14 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 2435 - Saving elements to a file... - 70 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2435 model... - numRounds = 5 - Consensus Length = 273 ( orig = 271 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 8 ( orig = 9 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time Processing RECON family: 1323 - Saving elements to a file... - 70 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1323 model... - numRounds = 11 - Consensus Length = 810 ( orig = 808 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 13 ( orig = 18 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time Processing RECON family: 347 - Saving elements to a file... - 68 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-347 model... - numRounds = 7 - Consensus Length = 339 ( orig = 340 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 4 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 1377 - Saving elements to a file... - 68 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1377 model... - numRounds = 8 - Consensus Length = 354 ( orig = 358 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 22 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 1874 - Saving elements to a file... - 68 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1874 model... - numRounds = 11 - Consensus Length = 4582 ( orig = 4599 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 25 ( orig = 29 ) Build Consensus: 0:0:29 Elapsed Time Refinement: 00:00:29 (hh:mm:ss) Elapsed Time Processing RECON family: 2087 - Saving elements to a file... - 64 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2087 model... - numRounds = 4 - Consensus Length = 38 ( orig = 38 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3177 - Saving elements to a file... - 64 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3177 model... - numRounds = 4 - Consensus Length = 222 ( orig = 219 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 11 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 3145 - Saving elements to a file... - 62 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3145 model... - numRounds = 6 - Consensus Length = 234 ( orig = 234 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 6 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 892 - Saving elements to a file... - 62 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-892 model... - numRounds = 7 - Consensus Length = 579 ( orig = 586 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 8 ( orig = 16 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time Processing RECON family: 2447 - Saving elements to a file... - 61 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2447 model... - numRounds = 5 - Consensus Length = 117 ( orig = 114 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 3 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 3553 - Saving elements to a file... - 61 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3553 model... - numRounds = 4 - Consensus Length = 466 ( orig = 466 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 7 ( orig = 6 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 1424 - Saving elements to a file... - 60 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1424 model... - numRounds = 6 - Consensus Length = 166 ( orig = 162 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 7 ( orig = 16 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 409 - Saving elements to a file... - 60 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-409 model... - numRounds = 6 - Consensus Length = 2405 ( orig = 2397 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 8 ( orig = 11 ) Build Consensus: 0:0:14 Elapsed Time Refinement: 00:00:15 (hh:mm:ss) Elapsed Time Processing RECON family: 284 - Saving elements to a file... - 59 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-284 model... - numRounds = 8 - Consensus Length = 1531 ( orig = 1544 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 8 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time Processing RECON family: 960 - Saving elements to a file... - 59 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-960 model... - numRounds = 6 - Consensus Length = 406 ( orig = 406 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 11 ( orig = 14 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 2414 - Saving elements to a file... - 59 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2414 model... - numRounds = 7 - Consensus Length = 865 ( orig = 864 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 1058 - Saving elements to a file... - 58 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1058 model... - numRounds = 6 - Consensus Length = 159 ( orig = 159 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 13 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 54 - Saving elements to a file... - 58 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-54 model... - numRounds = 6 - Consensus Length = 464 ( orig = 468 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 5 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 223 - Saving elements to a file... - 57 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-223 model... - numRounds = 9 - Consensus Length = 1715 ( orig = 1705 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 11 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time Processing RECON family: 188 - Saving elements to a file... - 57 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-188 model... - numRounds = 7 - Consensus Length = 954 ( orig = 944 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 15 ( orig = 16 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 2009 - Saving elements to a file... - 57 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2009 model... - numRounds = 8 - Consensus Length = 3820 ( orig = 3834 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 14 ( orig = 18 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time Processing RECON family: 863 - Saving elements to a file... - 56 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-863 model... - numRounds = 7 - Consensus Length = 737 ( orig = 737 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 14 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 242 - Saving elements to a file... - 56 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-242 model... - numRounds = 6 - Consensus Length = 925 ( orig = 921 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 13 ( orig = 17 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2382 - Saving elements to a file... - 55 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2382 model... - numRounds = 7 - Consensus Length = 775 ( orig = 773 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 18 ( orig = 19 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 112 - Saving elements to a file... - 55 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-112 model... - numRounds = 11 - Consensus Length = 719 ( orig = 709 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 13 ( orig = 17 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time Processing RECON family: 293 - Saving elements to a file... - 54 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-293 model... - numRounds = 6 - Consensus Length = 891 ( orig = 879 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 9 ( orig = 8 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 643 - Saving elements to a file... - 54 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-643 model... - numRounds = 6 - Consensus Length = 2074 ( orig = 2078 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 9 ( orig = 9 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 943 - Saving elements to a file... - 54 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-943 model... - numRounds = 9 - Consensus Length = 1461 ( orig = 1458 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 8 ( orig = 20 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 4368 - Saving elements to a file... - 53 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4368 model... - numRounds = 4 - Consensus Length = 62 ( orig = 62 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1712 - Saving elements to a file... - 53 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1712 model... - numRounds = 7 - Consensus Length = 1551 ( orig = 1532 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 11 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 2576 - Saving elements to a file... - 53 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2576 model... - numRounds = 6 - Consensus Length = 976 ( orig = 983 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 6 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 1370 - Saving elements to a file... - 52 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1370 model... - numRounds = 6 - Consensus Length = 1574 ( orig = 1572 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 1408 - Saving elements to a file... - 52 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1408 model... - numRounds = 8 - Consensus Length = 1735 ( orig = 1758 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:15 Elapsed Time Refinement: 00:00:15 (hh:mm:ss) Elapsed Time Processing RECON family: 3267 - Saving elements to a file... - 52 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3267 model... - numRounds = 4 - Consensus Length = 985 ( orig = 979 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 383 - Saving elements to a file... - 52 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-383 model... - numRounds = 11 - Consensus Length = 3586 ( orig = 3586 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 13 ( orig = 16 ) Build Consensus: 0:0:17 Elapsed Time Refinement: 00:00:17 (hh:mm:ss) Elapsed Time Processing RECON family: 719 - Saving elements to a file... - 51 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-719 model... - numRounds = 8 - Consensus Length = 818 ( orig = 833 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 18 ( orig = 24 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 22 - Saving elements to a file... - 51 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-22 model... - numRounds = 11 - Consensus Length = 228 ( orig = 228 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 8 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 950 - Saving elements to a file... - 51 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-950 model... - numRounds = 5 - Consensus Length = 675 ( orig = 674 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 10 ( orig = 12 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 651 - Saving elements to a file... - 50 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-651 model... - numRounds = 7 - Consensus Length = 177 ( orig = 177 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 13 ( orig = 17 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 688 - Saving elements to a file... - 50 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-688 model... - numRounds = 5 - Consensus Length = 262 ( orig = 262 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1489 - Saving elements to a file... - 49 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1489 model... - numRounds = 5 - Consensus Length = 597 ( orig = 595 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 7 ( orig = 7 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 215 - Saving elements to a file... - 49 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-215 model... - numRounds = 5 - Consensus Length = 1069 ( orig = 1068 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 19 ( orig = 20 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2440 - Saving elements to a file... - 49 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2440 model... - numRounds = 11 - Consensus Length = 1208 ( orig = 1224 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 9 ) Build Consensus: 0:0:15 Elapsed Time Refinement: 00:00:15 (hh:mm:ss) Elapsed Time Processing RECON family: 1044 - Saving elements to a file... - 49 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1044 model... - numRounds = 5 - Consensus Length = 2882 ( orig = 2879 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time Processing RECON family: 2453 - Saving elements to a file... - 48 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2453 model... - numRounds = 6 - Consensus Length = 453 ( orig = 452 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 7 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1889 - Saving elements to a file... - 48 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1889 model... - numRounds = 7 - Consensus Length = 1534 ( orig = 1525 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 10 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 1859 - Saving elements to a file... - 48 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1859 model... - numRounds = 5 - Consensus Length = 261 ( orig = 260 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 4 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1531 - Saving elements to a file... - 47 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1531 model... - numRounds = 5 - Consensus Length = 1293 ( orig = 1292 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 736 - Saving elements to a file... - 47 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-736 model... - numRounds = 8 - Consensus Length = 242 ( orig = 243 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 7 ( orig = 13 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2078 - Saving elements to a file... - 47 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2078 model... - numRounds = 5 - Consensus Length = 196 ( orig = 196 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 6 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 862 - Saving elements to a file... - 47 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-862 model... - numRounds = 5 - Consensus Length = 456 ( orig = 456 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 14 ( orig = 13 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1152 - Saving elements to a file... - 47 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1152 model... - numRounds = 8 - Consensus Length = 745 ( orig = 735 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 8 ( orig = 8 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 1490 - Saving elements to a file... - 46 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1490 model... - numRounds = 5 - Consensus Length = 216 ( orig = 219 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 20 ( orig = 21 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4386 - Saving elements to a file... - 46 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4386 model... - numRounds = 7 - Consensus Length = 2544 ( orig = 2522 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time Processing RECON family: 19 - Saving elements to a file... - 46 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-19 model... - numRounds = 5 - Consensus Length = 380 ( orig = 382 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 857 - Saving elements to a file... - 46 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-857 model... - numRounds = 7 - Consensus Length = 627 ( orig = 615 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 4 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 194 - Saving elements to a file... - 45 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-194 model... - numRounds = 11 - Consensus Length = 754 ( orig = 752 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 9 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time Processing RECON family: 1479 - Saving elements to a file... - 45 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1479 model... - numRounds = 6 - Consensus Length = 1021 ( orig = 1023 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 15 ( orig = 18 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1612 - Saving elements to a file... - 45 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1612 model... - numRounds = 8 - Consensus Length = 867 ( orig = 863 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 11 ( orig = 14 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 1534 - Saving elements to a file... - 45 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1534 model... - numRounds = 5 - Consensus Length = 5377 ( orig = 5388 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 7 ( orig = 8 ) Build Consensus: 0:0:15 Elapsed Time Refinement: 00:00:15 (hh:mm:ss) Elapsed Time Processing RECON family: 1653 - Saving elements to a file... - 45 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1653 model... - numRounds = 7 - Consensus Length = 906 ( orig = 910 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 5 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 255 - Saving elements to a file... - 45 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-255 model... - numRounds = 3 - Consensus Length = 45 ( orig = 45 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 614 - Saving elements to a file... - 45 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-614 model... - numRounds = 5 - Consensus Length = 517 ( orig = 517 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 8 ( orig = 10 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 87 - Saving elements to a file... - 44 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-87 model... - numRounds = 6 - Consensus Length = 378 ( orig = 378 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 10 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 814 - Saving elements to a file... - 44 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-814 model... - numRounds = 5 - Consensus Length = 1410 ( orig = 1412 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time Processing RECON family: 1582 - Saving elements to a file... - 44 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1582 model... - numRounds = 5 - Consensus Length = 5296 ( orig = 5305 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 3 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time Processing RECON family: 1140 - Saving elements to a file... - 44 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1140 model... - numRounds = 6 - Consensus Length = 366 ( orig = 371 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 7 ( orig = 12 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2882 - Saving elements to a file... - 43 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2882 model... - numRounds = 7 - Consensus Length = 1001 ( orig = 995 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 8 ( orig = 11 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2913 - Saving elements to a file... - 43 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2913 model... - numRounds = 5 - Consensus Length = 722 ( orig = 722 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 5234 - Saving elements to a file... - 43 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5234 model... - numRounds = 8 - Consensus Length = 1115 ( orig = 1111 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 4 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 823 - Saving elements to a file... - 43 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-823 model... - numRounds = 5 - Consensus Length = 923 ( orig = 923 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 1 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 492 - Saving elements to a file... - 43 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-492 model... - numRounds = 5 - Consensus Length = 711 ( orig = 710 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 7 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 4387 - Saving elements to a file... - 42 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4387 model... - numRounds = 8 - Consensus Length = 697 ( orig = 707 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 714 - Saving elements to a file... - 42 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-714 model... - numRounds = 6 - Consensus Length = 389 ( orig = 383 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 11 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2293 - Saving elements to a file... - 41 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2293 model... - numRounds = 7 - Consensus Length = 1308 ( orig = 1304 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 7 ( orig = 6 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 1681 - Saving elements to a file... - 41 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1681 model... - numRounds = 8 - Consensus Length = 2675 ( orig = 2595 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 4 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time Processing RECON family: 426 - Saving elements to a file... - 41 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-426 model... - numRounds = 5 - Consensus Length = 958 ( orig = 964 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 4448 - Saving elements to a file... - 41 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4448 model... - numRounds = 6 - Consensus Length = 659 ( orig = 660 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 497 - Saving elements to a file... - 41 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-497 model... - numRounds = 6 - Consensus Length = 2028 ( orig = 2034 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 10 ( orig = 13 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 1960 - Saving elements to a file... - 40 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1960 model... - numRounds = 4 - Consensus Length = 57 ( orig = 57 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 4745 - Saving elements to a file... - 40 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4745 model... - numRounds = 5 - Consensus Length = 1650 ( orig = 1647 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time Processing RECON family: 458 - Saving elements to a file... - 40 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-458 model... - numRounds = 6 - Consensus Length = 155 ( orig = 150 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 256 - Saving elements to a file... - 40 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-256 model... - numRounds = 6 - Consensus Length = 1208 ( orig = 1209 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time Processing RECON family: 1409 - Saving elements to a file... - 40 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1409 model... - numRounds = 6 - Consensus Length = 138 ( orig = 138 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 620 - Saving elements to a file... - 40 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-620 model... - numRounds = 6 - Consensus Length = 690 ( orig = 692 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 70 - Saving elements to a file... - 40 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-70 model... - numRounds = 10 - Consensus Length = 1859 ( orig = 1846 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 9 ) Build Consensus: 0:0:31 Elapsed Time Refinement: 00:00:31 (hh:mm:ss) Elapsed Time Processing RECON family: 3958 - Saving elements to a file... - 40 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3958 model... - numRounds = 6 - Consensus Length = 369 ( orig = 366 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 333 - Saving elements to a file... - 40 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-333 model... - numRounds = 6 - Consensus Length = 873 ( orig = 878 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 958 - Saving elements to a file... - 40 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-958 model... - numRounds = 5 - Consensus Length = 481 ( orig = 481 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 10 ( orig = 11 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 5962 - Saving elements to a file... - 39 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5962 model... - numRounds = 6 - Consensus Length = 1552 ( orig = 1552 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 2564 - Saving elements to a file... - 39 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2564 model... - numRounds = 5 - Consensus Length = 436 ( orig = 435 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2644 - Saving elements to a file... - 39 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2644 model... - numRounds = 4 - Consensus Length = 46 ( orig = 46 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 327 - Saving elements to a file... - 39 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-327 model... - numRounds = 7 - Consensus Length = 563 ( orig = 582 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 6 ( orig = 13 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2272 - Saving elements to a file... - 39 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2272 model... - numRounds = 7 - Consensus Length = 995 ( orig = 996 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 1 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 430 - Saving elements to a file... - 39 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-430 model... - numRounds = 6 - Consensus Length = 1427 ( orig = 1423 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 8 ( orig = 8 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 1450 - Saving elements to a file... - 39 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1450 model... - numRounds = 6 - Consensus Length = 406 ( orig = 404 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 1674 - Saving elements to a file... - 38 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1674 model... - numRounds = 9 - Consensus Length = 777 ( orig = 779 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 785 - Saving elements to a file... - 38 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-785 model... - numRounds = 8 - Consensus Length = 2820 ( orig = 2815 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 7 ( orig = 8 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time Processing RECON family: 3950 - Saving elements to a file... - 38 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3950 model... - numRounds = 4 - Consensus Length = 93 ( orig = 93 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1208 - Saving elements to a file... - 38 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1208 model... - numRounds = 7 - Consensus Length = 379 ( orig = 369 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 8 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 563 - Saving elements to a file... - 38 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-563 model... - numRounds = 5 - Consensus Length = 219 ( orig = 220 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1060 - Saving elements to a file... - 38 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1060 model... - numRounds = 7 - Consensus Length = 345 ( orig = 349 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 5 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1091 - Saving elements to a file... - 37 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1091 model... - numRounds = 6 - Consensus Length = 455 ( orig = 459 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3397 - Saving elements to a file... - 37 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3397 model... - numRounds = 5 - Consensus Length = 1551 ( orig = 1553 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 4 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 522 - Saving elements to a file... - 37 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-522 model... - numRounds = 5 - Consensus Length = 193 ( orig = 194 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1772 - Saving elements to a file... - 37 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1772 model... - numRounds = 8 - Consensus Length = 561 ( orig = 558 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 14 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1404 - Saving elements to a file... - 37 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1404 model... - numRounds = 7 - Consensus Length = 1610 ( orig = 1600 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 10 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 948 - Saving elements to a file... - 37 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-948 model... - numRounds = 6 - Consensus Length = 475 ( orig = 474 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 9 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 319 - Saving elements to a file... - 37 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-319 model... - numRounds = 6 - Consensus Length = 2918 ( orig = 2948 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 949 - Saving elements to a file... - 37 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-949 model... - numRounds = 5 - Consensus Length = 2607 ( orig = 2594 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 15 ( orig = 15 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 966 - Saving elements to a file... - 37 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-966 model... - numRounds = 6 - Consensus Length = 228 ( orig = 231 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 10 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 160 - Saving elements to a file... - 36 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-160 model... - numRounds = 7 - Consensus Length = 1745 ( orig = 1748 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 8 ( orig = 23 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 421 - Saving elements to a file... - 36 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-421 model... - numRounds = 8 - Consensus Length = 251 ( orig = 244 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 10 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 218 - Saving elements to a file... - 36 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-218 model... - numRounds = 6 - Consensus Length = 1554 ( orig = 1545 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 3947 - Saving elements to a file... - 36 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3947 model... - numRounds = 6 - Consensus Length = 338 ( orig = 350 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2167 - Saving elements to a file... - 36 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2167 model... - numRounds = 4 - Consensus Length = 553 ( orig = 553 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3760 - Saving elements to a file... - 36 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3760 model... - numRounds = 8 - Consensus Length = 669 ( orig = 666 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 931 - Saving elements to a file... - 36 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-931 model... - numRounds = 6 - Consensus Length = 397 ( orig = 393 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1979 - Saving elements to a file... - 36 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1979 model... - numRounds = 7 - Consensus Length = 383 ( orig = 388 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 1576 - Saving elements to a file... - 36 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1576 model... - numRounds = 7 - Consensus Length = 651 ( orig = 648 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 6 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3959 - Saving elements to a file... - 35 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3959 model... - numRounds = 9 - Consensus Length = 568 ( orig = 560 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 1342 - Saving elements to a file... - 35 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1342 model... - numRounds = 5 - Consensus Length = 2225 ( orig = 2232 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 9 ( orig = 9 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 909 - Saving elements to a file... - 35 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-909 model... - numRounds = 8 - Consensus Length = 414 ( orig = 428 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 9 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 2413 - Saving elements to a file... - 35 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2413 model... - numRounds = 6 - Consensus Length = 2704 ( orig = 2665 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time Processing RECON family: 3220 - Saving elements to a file... - 35 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3220 model... - numRounds = 5 - Consensus Length = 1405 ( orig = 1408 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 393 - Saving elements to a file... - 35 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-393 model... - numRounds = 11 - Consensus Length = 667 ( orig = 674 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 1237 - Saving elements to a file... - 34 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1237 model... - numRounds = 5 - Consensus Length = 4591 ( orig = 4594 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 5 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time Processing RECON family: 5681 - Saving elements to a file... - 34 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5681 model... - numRounds = 5 - Consensus Length = 361 ( orig = 361 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 5875 - Saving elements to a file... - 34 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5875 model... - numRounds = 5 - Consensus Length = 907 ( orig = 906 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 114 - Saving elements to a file... - 34 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-114 model... - numRounds = 6 - Consensus Length = 750 ( orig = 738 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 4 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 525 - Saving elements to a file... - 34 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-525 model... - numRounds = 9 - Consensus Length = 747 ( orig = 761 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 3712 - Saving elements to a file... - 34 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3712 model... - numRounds = 9 - Consensus Length = 665 ( orig = 662 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 3304 - Saving elements to a file... - 34 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3304 model... - numRounds = 4 - Consensus Length = 64 ( orig = 64 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2262 - Saving elements to a file... - 34 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2262 model... - numRounds = 6 - Consensus Length = 3728 ( orig = 3722 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time Processing RECON family: 2523 - Saving elements to a file... - 34 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2523 model... - numRounds = 6 - Consensus Length = 493 ( orig = 492 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 9 ( orig = 11 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 841 - Saving elements to a file... - 33 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-841 model... - numRounds = 5 - Consensus Length = 157 ( orig = 154 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 7 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1287 - Saving elements to a file... - 33 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1287 model... - numRounds = 6 - Consensus Length = 970 ( orig = 962 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2504 - Saving elements to a file... - 33 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2504 model... - numRounds = 5 - Consensus Length = 938 ( orig = 938 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2281 - Saving elements to a file... - 33 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2281 model... - numRounds = 4 - Consensus Length = 205 ( orig = 205 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 838 - Saving elements to a file... - 33 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-838 model... - numRounds = 4 - Consensus Length = 64 ( orig = 64 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 8 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 987 - Saving elements to a file... - 33 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-987 model... - numRounds = 11 - Consensus Length = 3445 ( orig = 3443 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 5 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time Processing RECON family: 261 - Saving elements to a file... - 33 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-261 model... - numRounds = 8 - Consensus Length = 375 ( orig = 383 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 6 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2901 - Saving elements to a file... - 33 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2901 model... - numRounds = 4 - Consensus Length = 43 ( orig = 43 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1007 - Saving elements to a file... - 33 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1007 model... - numRounds = 5 - Consensus Length = 2570 ( orig = 2582 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time Processing RECON family: 1972 - Saving elements to a file... - 33 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1972 model... - numRounds = 6 - Consensus Length = 1008 ( orig = 1053 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 8 ( orig = 10 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2376 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2376 model... - numRounds = 5 - Consensus Length = 683 ( orig = 682 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1219 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1219 model... - numRounds = 7 - Consensus Length = 209 ( orig = 209 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 17 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-17 model... - numRounds = 5 - Consensus Length = 1061 ( orig = 1062 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 8 ( orig = 10 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3876 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:01 (hh:mm:ss) Elapsed Time Refining family-3876 model... - numRounds = 4 - Consensus Length = 283 ( orig = 283 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1027 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1027 model... - numRounds = 8 - Consensus Length = 409 ( orig = 407 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 4 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1039 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1039 model... - numRounds = 5 - Consensus Length = 196 ( orig = 196 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 5 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 670 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-670 model... - numRounds = 4 - Consensus Length = 64 ( orig = 64 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 624 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-624 model... - numRounds = 5 - Consensus Length = 761 ( orig = 761 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 4916 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4916 model... - numRounds = 6 - Consensus Length = 1015 ( orig = 1013 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 815 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-815 model... - numRounds = 4 - Consensus Length = 1250 ( orig = 1251 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 1266 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1266 model... - numRounds = 6 - Consensus Length = 164 ( orig = 161 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 9146 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-9146 model... - numRounds = 6 - Consensus Length = 566 ( orig = 567 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2745 - Saving elements to a file... - 31 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2745 model... - numRounds = 5 - Consensus Length = 955 ( orig = 952 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 5 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 146 - Saving elements to a file... - 31 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-146 model... - numRounds = 8 - Consensus Length = 1595 ( orig = 1595 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 9 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time Processing RECON family: 2143 - Saving elements to a file... - 31 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2143 model... - numRounds = 7 - Consensus Length = 1158 ( orig = 1166 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time Processing RECON family: 786 - Saving elements to a file... - 31 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-786 model... - numRounds = 11 - Consensus Length = 363 ( orig = 370 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 43 - Saving elements to a file... - 31 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-43 model... - numRounds = 7 - Consensus Length = 317 ( orig = 319 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 7 ( orig = 10 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 283 - Saving elements to a file... - 31 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-283 model... - numRounds = 11 - Consensus Length = 655 ( orig = 652 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 7 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time Processing RECON family: 505 - Saving elements to a file... - 31 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-505 model... - numRounds = 4 - Consensus Length = 75 ( orig = 75 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 953 - Saving elements to a file... - 31 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-953 model... - numRounds = 5 - Consensus Length = 1020 ( orig = 1023 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 6 ( orig = 7 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 429 - Saving elements to a file... - 31 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-429 model... - numRounds = 8 - Consensus Length = 4447 ( orig = 4472 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time Processing RECON family: 2199 - Saving elements to a file... - 31 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2199 model... - numRounds = 4 - Consensus Length = 428 ( orig = 428 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4466 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4466 model... - numRounds = 7 - Consensus Length = 2792 ( orig = 2813 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 1587 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1587 model... - numRounds = 7 - Consensus Length = 712 ( orig = 716 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 8 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 493 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-493 model... - numRounds = 6 - Consensus Length = 662 ( orig = 667 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 634 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-634 model... - numRounds = 5 - Consensus Length = 317 ( orig = 316 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1291 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1291 model... - numRounds = 4 - Consensus Length = 69 ( orig = 69 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1369 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1369 model... - numRounds = 6 - Consensus Length = 3264 ( orig = 3341 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 5 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time Processing RECON family: 3662 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3662 model... - numRounds = 7 - Consensus Length = 1093 ( orig = 1079 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 3 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2177 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2177 model... - numRounds = 5 - Consensus Length = 526 ( orig = 526 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 5905 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5905 model... - numRounds = 8 - Consensus Length = 522 ( orig = 527 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 10 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1592 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1592 model... - numRounds = 5 - Consensus Length = 526 ( orig = 522 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 913 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-913 model... - numRounds = 5 - Consensus Length = 122 ( orig = 121 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 7 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1642 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1642 model... - numRounds = 4 - Consensus Length = 44 ( orig = 44 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 5301 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5301 model... - numRounds = 5 - Consensus Length = 184 ( orig = 184 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2057 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2057 model... - numRounds = 5 - Consensus Length = 5979 ( orig = 5996 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 3 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time Processing RECON family: 806 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-806 model... - numRounds = 4 - Consensus Length = 1135 ( orig = 1122 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 135 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-135 model... - numRounds = 9 - Consensus Length = 2578 ( orig = 2595 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 16 ( orig = 18 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 151 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-151 model... - numRounds = 6 - Consensus Length = 1134 ( orig = 1161 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 5 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 312 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-312 model... - numRounds = 4 - Consensus Length = 117 ( orig = 117 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 396 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-396 model... - numRounds = 8 - Consensus Length = 6043 ( orig = 6060 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time Processing RECON family: 632 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-632 model... - numRounds = 4 - Consensus Length = 501 ( orig = 501 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2342 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2342 model... - numRounds = 5 - Consensus Length = 421 ( orig = 423 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1358 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1358 model... - numRounds = 7 - Consensus Length = 234 ( orig = 232 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 7 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3458 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3458 model... - numRounds = 5 - Consensus Length = 604 ( orig = 603 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1456 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1456 model... - numRounds = 6 - Consensus Length = 1750 ( orig = 1765 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 12 ( orig = 13 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 603 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-603 model... - numRounds = 6 - Consensus Length = 1144 ( orig = 1126 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2107 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2107 model... - numRounds = 8 - Consensus Length = 308 ( orig = 308 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2623 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2623 model... - numRounds = 6 - Consensus Length = 445 ( orig = 446 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2436 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2436 model... - numRounds = 6 - Consensus Length = 767 ( orig = 760 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 4541 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4541 model... - numRounds = 5 - Consensus Length = 473 ( orig = 473 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2959 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2959 model... - numRounds = 7 - Consensus Length = 218 ( orig = 223 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 932 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-932 model... - numRounds = 5 - Consensus Length = 181 ( orig = 181 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 4 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1388 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1388 model... - numRounds = 7 - Consensus Length = 510 ( orig = 519 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 5 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2927 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2927 model... - numRounds = 4 - Consensus Length = 47 ( orig = 47 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 4486 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4486 model... - numRounds = 6 - Consensus Length = 3020 ( orig = 3007 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 2983 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2983 model... - numRounds = 6 - Consensus Length = 434 ( orig = 438 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2976 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2976 model... - numRounds = 5 - Consensus Length = 1114 ( orig = 1114 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 995 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:01 (hh:mm:ss) Elapsed Time Refining family-995 model... - numRounds = 5 - Consensus Length = 540 ( orig = 540 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 968 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-968 model... - numRounds = 5 - Consensus Length = 845 ( orig = 841 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 6 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2264 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2264 model... - numRounds = 7 - Consensus Length = 910 ( orig = 920 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 6 ( orig = 7 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 631 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-631 model... - numRounds = 4 - Consensus Length = 96 ( orig = 96 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 514 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-514 model... - numRounds = 7 - Consensus Length = 1246 ( orig = 1249 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 394 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-394 model... - numRounds = 6 - Consensus Length = 423 ( orig = 424 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 5593 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5593 model... - numRounds = 6 - Consensus Length = 460 ( orig = 457 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1415 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1415 model... - numRounds = 5 - Consensus Length = 585 ( orig = 583 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 4537 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4537 model... - numRounds = 4 - Consensus Length = 77 ( orig = 77 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 4120 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4120 model... - numRounds = 4 - Consensus Length = 91 ( orig = 91 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3928 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3928 model... - numRounds = 8 - Consensus Length = 4633 ( orig = 4583 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time Processing RECON family: 2401 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2401 model... - numRounds = 5 - Consensus Length = 245 ( orig = 245 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1822 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1822 model... - numRounds = 6 - Consensus Length = 1912 ( orig = 1918 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 3875 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3875 model... - numRounds = 5 - Consensus Length = 1200 ( orig = 1199 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3631 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3631 model... - numRounds = 5 - Consensus Length = 918 ( orig = 917 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 4514 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4514 model... - numRounds = 11 - Consensus Length = 573 ( orig = 615 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 652 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-652 model... - numRounds = 11 - Consensus Length = 836 ( orig = 864 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 1224 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1224 model... - numRounds = 5 - Consensus Length = 333 ( orig = 327 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2415 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2415 model... - numRounds = 4 - Consensus Length = 768 ( orig = 768 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4776 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4776 model... - numRounds = 7 - Consensus Length = 1890 ( orig = 1881 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 869 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-869 model... - numRounds = 5 - Consensus Length = 924 ( orig = 926 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 5026 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5026 model... - numRounds = 4 - Consensus Length = 68 ( orig = 68 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 450 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-450 model... - numRounds = 6 - Consensus Length = 523 ( orig = 511 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 438 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-438 model... - numRounds = 8 - Consensus Length = 1357 ( orig = 1357 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 5 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 822 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-822 model... - numRounds = 8 - Consensus Length = 930 ( orig = 951 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 5802 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5802 model... - numRounds = 7 - Consensus Length = 2532 ( orig = 2545 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 5 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 4604 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4604 model... - numRounds = 5 - Consensus Length = 409 ( orig = 409 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 7 ( orig = 7 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 9 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-9 model... - numRounds = 7 - Consensus Length = 390 ( orig = 387 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 7 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2492 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2492 model... - numRounds = 5 - Consensus Length = 2236 ( orig = 2244 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 142 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-142 model... - numRounds = 7 - Consensus Length = 397 ( orig = 403 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 731 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-731 model... - numRounds = 6 - Consensus Length = 198 ( orig = 198 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 406 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:01 (hh:mm:ss) Elapsed Time Refining family-406 model... - numRounds = 6 - Consensus Length = 537 ( orig = 522 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1076 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1076 model... - numRounds = 6 - Consensus Length = 314 ( orig = 313 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1248 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1248 model... - numRounds = 6 - Consensus Length = 753 ( orig = 767 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 764 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-764 model... - numRounds = 6 - Consensus Length = 1683 ( orig = 1667 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 101 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-101 model... - numRounds = 6 - Consensus Length = 788 ( orig = 775 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 422 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-422 model... - numRounds = 7 - Consensus Length = 441 ( orig = 440 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 9 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3441 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3441 model... - numRounds = 4 - Consensus Length = 547 ( orig = 547 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 7 ( orig = 7 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2498 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2498 model... - numRounds = 6 - Consensus Length = 1035 ( orig = 1039 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 178 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-178 model... - numRounds = 5 - Consensus Length = 1380 ( orig = 1374 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 207 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-207 model... - numRounds = 9 - Consensus Length = 2644 ( orig = 2676 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 2229 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2229 model... - numRounds = 7 - Consensus Length = 684 ( orig = 675 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1821 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1821 model... - numRounds = 6 - Consensus Length = 755 ( orig = 764 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 6 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2494 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2494 model... - numRounds = 7 - Consensus Length = 1107 ( orig = 1095 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 817 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-817 model... - numRounds = 7 - Consensus Length = 1019 ( orig = 1014 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 2 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 354 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-354 model... - numRounds = 6 - Consensus Length = 784 ( orig = 780 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2562 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2562 model... - numRounds = 8 - Consensus Length = 1721 ( orig = 1713 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 1089 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1089 model... - numRounds = 6 - Consensus Length = 205 ( orig = 215 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 6 ( orig = 7 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2879 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2879 model... - numRounds = 5 - Consensus Length = 663 ( orig = 667 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 6 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2255 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2255 model... - numRounds = 5 - Consensus Length = 974 ( orig = 971 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2082 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2082 model... - numRounds = 7 - Consensus Length = 729 ( orig = 714 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 930 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-930 model... - numRounds = 5 - Consensus Length = 891 ( orig = 897 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 7266 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-7266 model... - numRounds = 4 - Consensus Length = 102 ( orig = 102 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1200 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1200 model... - numRounds = 6 - Consensus Length = 794 ( orig = 805 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3303 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3303 model... - numRounds = 4 - Consensus Length = 684 ( orig = 684 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2693 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2693 model... - numRounds = 7 - Consensus Length = 2559 ( orig = 2534 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 3 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 761 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-761 model... - numRounds = 5 - Consensus Length = 699 ( orig = 699 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 6 ( orig = 6 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 6122 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-6122 model... - numRounds = 5 - Consensus Length = 265 ( orig = 266 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 140 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-140 model... - numRounds = 4 - Consensus Length = 216 ( orig = 216 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1153 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1153 model... - numRounds = 5 - Consensus Length = 1753 ( orig = 1753 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 740 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-740 model... - numRounds = 6 - Consensus Length = 581 ( orig = 574 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 164 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-164 model... - numRounds = 7 - Consensus Length = 479 ( orig = 473 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 5064 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5064 model... - numRounds = 5 - Consensus Length = 987 ( orig = 978 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2343 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2343 model... - numRounds = 5 - Consensus Length = 491 ( orig = 485 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 355 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-355 model... - numRounds = 5 - Consensus Length = 525 ( orig = 526 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1754 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1754 model... - numRounds = 7 - Consensus Length = 264 ( orig = 261 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 5 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3987 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3987 model... - numRounds = 9 - Consensus Length = 512 ( orig = 515 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4113 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4113 model... - numRounds = 5 - Consensus Length = 1175 ( orig = 1178 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 414 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-414 model... - numRounds = 6 - Consensus Length = 707 ( orig = 703 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2225 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2225 model... - numRounds = 7 - Consensus Length = 892 ( orig = 885 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1494 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1494 model... - numRounds = 5 - Consensus Length = 711 ( orig = 711 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2906 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2906 model... - numRounds = 6 - Consensus Length = 2938 ( orig = 2942 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 2238 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2238 model... - numRounds = 5 - Consensus Length = 582 ( orig = 559 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1721 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1721 model... - numRounds = 6 - Consensus Length = 811 ( orig = 807 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 6 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 501 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-501 model... - numRounds = 11 - Consensus Length = 1191 ( orig = 1159 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 10 ( orig = 13 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 320 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-320 model... - numRounds = 7 - Consensus Length = 485 ( orig = 488 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1652 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:01 (hh:mm:ss) Elapsed Time Refining family-1652 model... - numRounds = 4 - Consensus Length = 65 ( orig = 65 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time Processing RECON family: 1263 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1263 model... - numRounds = 5 - Consensus Length = 398 ( orig = 404 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 6 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1640 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1640 model... - numRounds = 5 - Consensus Length = 1597 ( orig = 1592 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 8 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 6898 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-6898 model... - numRounds = 5 - Consensus Length = 771 ( orig = 771 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1294 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1294 model... - numRounds = 4 - Consensus Length = 81 ( orig = 81 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1405 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1405 model... - numRounds = 8 - Consensus Length = 2297 ( orig = 2298 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:16 Elapsed Time Refinement: 00:00:16 (hh:mm:ss) Elapsed Time Processing RECON family: 2155 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2155 model... - numRounds = 5 - Consensus Length = 431 ( orig = 432 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 5 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4342 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4342 model... - numRounds = 6 - Consensus Length = 469 ( orig = 463 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 4 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 5500 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5500 model... - numRounds = 5 - Consensus Length = 1240 ( orig = 1235 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1878 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1878 model... - numRounds = 7 - Consensus Length = 1578 ( orig = 1576 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 123 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-123 model... - numRounds = 4 - Consensus Length = 1749 ( orig = 1749 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 5 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 656 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-656 model... - numRounds = 5 - Consensus Length = 319 ( orig = 318 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 6 ( orig = 7 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1196 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1196 model... - numRounds = 9 - Consensus Length = 1562 ( orig = 1583 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 8 ( orig = 8 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 1966 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1966 model... - numRounds = 6 - Consensus Length = 1572 ( orig = 1587 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1621 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1621 model... - numRounds = 6 - Consensus Length = 5819 ( orig = 5856 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 1 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time Processing RECON family: 3043 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3043 model... - numRounds = 6 - Consensus Length = 1191 ( orig = 1212 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3868 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3868 model... - numRounds = 4 - Consensus Length = 232 ( orig = 232 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 79 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-79 model... - numRounds = 6 - Consensus Length = 642 ( orig = 631 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 961 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-961 model... - numRounds = 5 - Consensus Length = 199 ( orig = 199 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 4 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1411 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1411 model... - numRounds = 4 - Consensus Length = 84 ( orig = 84 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 5363 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5363 model... - numRounds = 4 - Consensus Length = 716 ( orig = 716 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 7275 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-7275 model... - numRounds = 6 - Consensus Length = 491 ( orig = 486 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 117 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-117 model... - numRounds = 7 - Consensus Length = 1036 ( orig = 1034 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 544 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-544 model... - numRounds = 6 - Consensus Length = 1448 ( orig = 1450 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 325 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-325 model... - numRounds = 7 - Consensus Length = 361 ( orig = 358 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1077 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1077 model... - numRounds = 5 - Consensus Length = 413 ( orig = 405 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1233 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1233 model... - numRounds = 8 - Consensus Length = 349 ( orig = 377 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1802 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1802 model... - numRounds = 4 - Consensus Length = 800 ( orig = 800 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 942 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-942 model... - numRounds = 5 - Consensus Length = 262 ( orig = 264 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 582 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-582 model... - numRounds = 7 - Consensus Length = 304 ( orig = 304 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1457 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1457 model... - numRounds = 4 - Consensus Length = 74 ( orig = 74 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 4311 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4311 model... - numRounds = 5 - Consensus Length = 1178 ( orig = 1180 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 235 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-235 model... - numRounds = 4 - Consensus Length = 583 ( orig = 586 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1064 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1064 model... - numRounds = 5 - Consensus Length = 85 ( orig = 85 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1668 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1668 model... - numRounds = 7 - Consensus Length = 680 ( orig = 674 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 14 ( orig = 14 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4931 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4931 model... - numRounds = 7 - Consensus Length = 399 ( orig = 386 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3440 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3440 model... - numRounds = 6 - Consensus Length = 1215 ( orig = 1207 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 8 ( orig = 8 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 800 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-800 model... - numRounds = 4 - Consensus Length = 292 ( orig = 292 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 8 ( orig = 9 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1032 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1032 model... - numRounds = 4 - Consensus Length = 3448 ( orig = 3450 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time Processing RECON family: 1087 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1087 model... - numRounds = 9 - Consensus Length = 520 ( orig = 520 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 80 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-80 model... - numRounds = 6 - Consensus Length = 505 ( orig = 505 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2495 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2495 model... - numRounds = 4 - Consensus Length = 298 ( orig = 298 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2377 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2377 model... - numRounds = 6 - Consensus Length = 1506 ( orig = 1483 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 4 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 433 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-433 model... - numRounds = 4 - Consensus Length = 195 ( orig = 199 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 774 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-774 model... - numRounds = 6 - Consensus Length = 1170 ( orig = 1172 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 330 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-330 model... - numRounds = 11 - Consensus Length = 1297 ( orig = 1375 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 14 ( orig = 14 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2231 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2231 model... - numRounds = 6 - Consensus Length = 554 ( orig = 546 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 10502 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-10502 model... - numRounds = 5 - Consensus Length = 667 ( orig = 672 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 8517 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:01 (hh:mm:ss) Elapsed Time Refining family-8517 model... - numRounds = 6 - Consensus Length = 1090 ( orig = 1080 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2163 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2163 model... - numRounds = 5 - Consensus Length = 166 ( orig = 164 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 445 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-445 model... - numRounds = 4 - Consensus Length = 873 ( orig = 873 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 8313 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-8313 model... - numRounds = 11 - Consensus Length = 1278 ( orig = 1261 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 3421 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3421 model... - numRounds = 6 - Consensus Length = 2095 ( orig = 2081 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 15 ( orig = 15 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 9087 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-9087 model... - numRounds = 8 - Consensus Length = 516 ( orig = 510 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 4 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 118 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-118 model... - numRounds = 5 - Consensus Length = 678 ( orig = 677 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 5 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 5587 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5587 model... - numRounds = 4 - Consensus Length = 785 ( orig = 785 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1560 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1560 model... - numRounds = 5 - Consensus Length = 712 ( orig = 712 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3741 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3741 model... - numRounds = 7 - Consensus Length = 839 ( orig = 866 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 545 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-545 model... - numRounds = 6 - Consensus Length = 1118 ( orig = 1090 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 306 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-306 model... - numRounds = 5 - Consensus Length = 208 ( orig = 208 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 8 ( orig = 9 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 795 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-795 model... - numRounds = 5 - Consensus Length = 701 ( orig = 700 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3132 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3132 model... - numRounds = 6 - Consensus Length = 1047 ( orig = 1038 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 951 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-951 model... - numRounds = 6 - Consensus Length = 1636 ( orig = 1643 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2871 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2871 model... - numRounds = 6 - Consensus Length = 4847 ( orig = 4893 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time Processing RECON family: 1842 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1842 model... - numRounds = 5 - Consensus Length = 1492 ( orig = 1517 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 9 ( orig = 9 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1017 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1017 model... - numRounds = 6 - Consensus Length = 986 ( orig = 943 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 12 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 915 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-915 model... - numRounds = 5 - Consensus Length = 180 ( orig = 185 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 7 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2309 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2309 model... - numRounds = 10 - Consensus Length = 2311 ( orig = 2360 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time Processing RECON family: 1602 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1602 model... - numRounds = 4 - Consensus Length = 851 ( orig = 851 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1857 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1857 model... - numRounds = 5 - Consensus Length = 859 ( orig = 858 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1873 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1873 model... - numRounds = 9 - Consensus Length = 293 ( orig = 301 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 742 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-742 model... - numRounds = 7 - Consensus Length = 907 ( orig = 896 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 407 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-407 model... - numRounds = 4 - Consensus Length = 72 ( orig = 72 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 378 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-378 model... - numRounds = 9 - Consensus Length = 141 ( orig = 155 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3457 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3457 model... - numRounds = 8 - Consensus Length = 338 ( orig = 341 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 755 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-755 model... - numRounds = 6 - Consensus Length = 2090 ( orig = 2102 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 3289 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3289 model... - numRounds = 7 - Consensus Length = 688 ( orig = 684 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 5 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3688 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3688 model... - numRounds = 6 - Consensus Length = 2058 ( orig = 2043 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 3460 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3460 model... - numRounds = 9 - Consensus Length = 730 ( orig = 720 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1420 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1420 model... - numRounds = 4 - Consensus Length = 171 ( orig = 171 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 8679 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-8679 model... - numRounds = 6 - Consensus Length = 775 ( orig = 773 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 9 ( orig = 9 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 119 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-119 model... - numRounds = 4 - Consensus Length = 523 ( orig = 523 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 481 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-481 model... - numRounds = 6 - Consensus Length = 635 ( orig = 635 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 291 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-291 model... - numRounds = 5 - Consensus Length = 314 ( orig = 299 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 260 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-260 model... - numRounds = 6 - Consensus Length = 3175 ( orig = 3159 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 4596 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4596 model... - numRounds = 4 - Consensus Length = 801 ( orig = 801 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 783 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-783 model... - numRounds = 5 - Consensus Length = 205 ( orig = 205 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 5460 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5460 model... - numRounds = 5 - Consensus Length = 488 ( orig = 485 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 152 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-152 model... - numRounds = 6 - Consensus Length = 2103 ( orig = 2028 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 4 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4 model... - numRounds = 8 - Consensus Length = 3682 ( orig = 3680 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 5 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 5839 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5839 model... - numRounds = 5 - Consensus Length = 924 ( orig = 929 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1868 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1868 model... - numRounds = 5 - Consensus Length = 339 ( orig = 327 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 4534 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4534 model... - numRounds = 9 - Consensus Length = 442 ( orig = 438 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 5 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 446 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-446 model... - numRounds = 10 - Consensus Length = 468 ( orig = 462 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 4 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2258 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2258 model... - numRounds = 9 - Consensus Length = 1580 ( orig = 1555 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 91 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-91 model... - numRounds = 7 - Consensus Length = 467 ( orig = 462 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 337 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:01 (hh:mm:ss) Elapsed Time Refining family-337 model... - numRounds = 4 - Consensus Length = 141 ( orig = 141 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3907 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3907 model... - numRounds = 6 - Consensus Length = 1435 ( orig = 1432 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1375 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1375 model... - numRounds = 7 - Consensus Length = 1039 ( orig = 1049 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 278 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-278 model... - numRounds = 5 - Consensus Length = 337 ( orig = 331 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 5 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2501 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2501 model... - numRounds = 6 - Consensus Length = 392 ( orig = 390 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 4748 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4748 model... - numRounds = 5 - Consensus Length = 1134 ( orig = 1129 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1050 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1050 model... - numRounds = 9 - Consensus Length = 392 ( orig = 384 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 6 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1290 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1290 model... - numRounds = 4 - Consensus Length = 120 ( orig = 120 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 181 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-181 model... - numRounds = 6 - Consensus Length = 1087 ( orig = 1084 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 807 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-807 model... - numRounds = 6 - Consensus Length = 866 ( orig = 862 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 813 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-813 model... - numRounds = 5 - Consensus Length = 848 ( orig = 845 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1895 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1895 model... - numRounds = 5 - Consensus Length = 112 ( orig = 116 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 4 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 404 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-404 model... - numRounds = 8 - Consensus Length = 991 ( orig = 962 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 8 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2603 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2603 model... - numRounds = 6 - Consensus Length = 275 ( orig = 273 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 5 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3895 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3895 model... - numRounds = 5 - Consensus Length = 2010 ( orig = 2040 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3986 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3986 model... - numRounds = 6 - Consensus Length = 661 ( orig = 661 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 5 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1989 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1989 model... - numRounds = 11 - Consensus Length = 869 ( orig = 894 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 1277 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1277 model... - numRounds = 9 - Consensus Length = 2249 ( orig = 2326 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 5 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 1244 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1244 model... - numRounds = 7 - Consensus Length = 882 ( orig = 876 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 5560 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5560 model... - numRounds = 5 - Consensus Length = 411 ( orig = 411 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2152 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2152 model... - numRounds = 4 - Consensus Length = 75 ( orig = 75 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 4940 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4940 model... - numRounds = 6 - Consensus Length = 622 ( orig = 625 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 853 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-853 model... - numRounds = 5 - Consensus Length = 568 ( orig = 554 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 58 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-58 model... - numRounds = 4 - Consensus Length = 671 ( orig = 671 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 460 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-460 model... - numRounds = 7 - Consensus Length = 237 ( orig = 235 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 4 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 870 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-870 model... - numRounds = 5 - Consensus Length = 674 ( orig = 673 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 9040 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-9040 model... - numRounds = 4 - Consensus Length = 475 ( orig = 475 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2681 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2681 model... - numRounds = 7 - Consensus Length = 1744 ( orig = 1753 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1368 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1368 model... - numRounds = 6 - Consensus Length = 519 ( orig = 517 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 10 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 503 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-503 model... - numRounds = 5 - Consensus Length = 566 ( orig = 566 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2519 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2519 model... - numRounds = 7 - Consensus Length = 3730 ( orig = 3754 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 7993 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-7993 model... - numRounds = 4 - Consensus Length = 1797 ( orig = 1803 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 9301 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-9301 model... - numRounds = 4 - Consensus Length = 159 ( orig = 160 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 360 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-360 model... - numRounds = 5 - Consensus Length = 668 ( orig = 670 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 6 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2888 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2888 model... - numRounds = 6 - Consensus Length = 813 ( orig = 797 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 32 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-32 model... - numRounds = 11 - Consensus Length = 869 ( orig = 876 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1055 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1055 model... - numRounds = 5 - Consensus Length = 363 ( orig = 362 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 6089 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-6089 model... - numRounds = 5 - Consensus Length = 887 ( orig = 890 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1315 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1315 model... - numRounds = 6 - Consensus Length = 711 ( orig = 686 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 6713 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-6713 model... - numRounds = 6 - Consensus Length = 280 ( orig = 279 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 282 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-282 model... - numRounds = 7 - Consensus Length = 721 ( orig = 720 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3683 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3683 model... - numRounds = 4 - Consensus Length = 202 ( orig = 202 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1574 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1574 model... - numRounds = 5 - Consensus Length = 169 ( orig = 167 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1274 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1274 model... - numRounds = 8 - Consensus Length = 792 ( orig = 791 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2059 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2059 model... - numRounds = 6 - Consensus Length = 1266 ( orig = 1278 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1581 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1581 model... - numRounds = 6 - Consensus Length = 178 ( orig = 179 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2542 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2542 model... - numRounds = 5 - Consensus Length = 932 ( orig = 936 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1826 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1826 model... - numRounds = 11 - Consensus Length = 1927 ( orig = 1880 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 10 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 329 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-329 model... - numRounds = 7 - Consensus Length = 451 ( orig = 447 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1144 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1144 model... - numRounds = 7 - Consensus Length = 3371 ( orig = 3509 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 8 ( orig = 8 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 3679 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3679 model... - numRounds = 5 - Consensus Length = 420 ( orig = 420 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4029 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4029 model... - numRounds = 5 - Consensus Length = 1000 ( orig = 995 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2089 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2089 model... - numRounds = 4 - Consensus Length = 122 ( orig = 122 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 4023 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4023 model... - numRounds = 6 - Consensus Length = 3017 ( orig = 3033 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2290 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2290 model... - numRounds = 7 - Consensus Length = 466 ( orig = 466 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1069 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1069 model... - numRounds = 4 - Consensus Length = 67 ( orig = 67 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1306 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1306 model... - numRounds = 6 - Consensus Length = 2457 ( orig = 2466 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 9 ( orig = 9 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1601 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1601 model... - numRounds = 5 - Consensus Length = 347 ( orig = 347 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2039 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2039 model... - numRounds = 5 - Consensus Length = 242 ( orig = 243 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 8 ( orig = 8 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 705 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-705 model... - numRounds = 8 - Consensus Length = 739 ( orig = 723 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 145 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-145 model... - numRounds = 3 - Consensus Length = 35 ( orig = 35 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 510 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-510 model... - numRounds = 5 - Consensus Length = 878 ( orig = 880 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 8792 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-8792 model... - numRounds = 8 - Consensus Length = 1338 ( orig = 1320 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 3278 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3278 model... - numRounds = 4 - Consensus Length = 792 ( orig = 792 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 4314 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4314 model... - numRounds = 4 - Consensus Length = 213 ( orig = 213 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3205 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3205 model... - numRounds = 4 - Consensus Length = 303 ( orig = 303 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1416 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1416 model... - numRounds = 9 - Consensus Length = 687 ( orig = 655 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1843 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1843 model... - numRounds = 7 - Consensus Length = 1508 ( orig = 1514 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 728 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-728 model... - numRounds = 4 - Consensus Length = 1658 ( orig = 1658 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1229 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1229 model... - numRounds = 11 - Consensus Length = 1683 ( orig = 1701 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 1690 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1690 model... - numRounds = 6 - Consensus Length = 1019 ( orig = 1019 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1618 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1618 model... - numRounds = 11 - Consensus Length = 4234 ( orig = 4272 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 5104 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5104 model... - numRounds = 11 - Consensus Length = 598 ( orig = 580 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 343 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-343 model... - numRounds = 7 - Consensus Length = 1465 ( orig = 1475 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 2114 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2114 model... - numRounds = 6 - Consensus Length = 1171 ( orig = 1160 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 576 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-576 model... - numRounds = 5 - Consensus Length = 1119 ( orig = 1103 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 5753 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5753 model... - numRounds = 6 - Consensus Length = 2367 ( orig = 2267 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1206 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1206 model... - numRounds = 7 - Consensus Length = 550 ( orig = 560 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1599 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1599 model... - numRounds = 4 - Consensus Length = 458 ( orig = 458 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3359 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3359 model... - numRounds = 6 - Consensus Length = 582 ( orig = 582 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1119 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1119 model... - numRounds = 5 - Consensus Length = 331 ( orig = 327 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 5065 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5065 model... - numRounds = 5 - Consensus Length = 379 ( orig = 380 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1758 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1758 model... - numRounds = 5 - Consensus Length = 1830 ( orig = 1800 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 5716 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5716 model... - numRounds = 8 - Consensus Length = 839 ( orig = 878 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 9 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2922 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2922 model... - numRounds = 6 - Consensus Length = 5509 ( orig = 5543 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time Processing RECON family: 3326 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3326 model... - numRounds = 7 - Consensus Length = 766 ( orig = 792 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 5180 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5180 model... - numRounds = 4 - Consensus Length = 70 ( orig = 70 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 456 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-456 model... - numRounds = 8 - Consensus Length = 220 ( orig = 221 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 6 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 902 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-902 model... - numRounds = 6 - Consensus Length = 5177 ( orig = 5183 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time Processing RECON family: 4970 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4970 model... - numRounds = 5 - Consensus Length = 927 ( orig = 909 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 63 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-63 model... - numRounds = 6 - Consensus Length = 597 ( orig = 603 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1381 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1381 model... - numRounds = 5 - Consensus Length = 969 ( orig = 964 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2868 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2868 model... - numRounds = 6 - Consensus Length = 803 ( orig = 800 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 621 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-621 model... - numRounds = 7 - Consensus Length = 998 ( orig = 991 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3927 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3927 model... - numRounds = 5 - Consensus Length = 602 ( orig = 605 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2175 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2175 model... - numRounds = 4 - Consensus Length = 276 ( orig = 276 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 941 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-941 model... - numRounds = 4 - Consensus Length = 84 ( orig = 84 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1122 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1122 model... - numRounds = 4 - Consensus Length = 241 ( orig = 244 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 4083 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4083 model... - numRounds = 5 - Consensus Length = 825 ( orig = 829 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 990 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-990 model... - numRounds = 6 - Consensus Length = 3662 ( orig = 3706 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1226 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1226 model... - numRounds = 9 - Consensus Length = 2049 ( orig = 2051 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 4079 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4079 model... - numRounds = 5 - Consensus Length = 1622 ( orig = 1623 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 5 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 131 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-131 model... - numRounds = 5 - Consensus Length = 422 ( orig = 420 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4277 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4277 model... - numRounds = 5 - Consensus Length = 252 ( orig = 252 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 4758 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4758 model... - numRounds = 7 - Consensus Length = 2960 ( orig = 2968 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 4467 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4467 model... - numRounds = 4 - Consensus Length = 461 ( orig = 461 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2577 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2577 model... - numRounds = 6 - Consensus Length = 1006 ( orig = 991 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3000 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3000 model... - numRounds = 11 - Consensus Length = 801 ( orig = 830 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 3 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 5063 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5063 model... - numRounds = 5 - Consensus Length = 353 ( orig = 358 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 5 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2675 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2675 model... - numRounds = 6 - Consensus Length = 1024 ( orig = 1006 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 5 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4295 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4295 model... - numRounds = 4 - Consensus Length = 820 ( orig = 805 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3209 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3209 model... - numRounds = 8 - Consensus Length = 1551 ( orig = 1540 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2100 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2100 model... - numRounds = 6 - Consensus Length = 890 ( orig = 889 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 4627 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4627 model... - numRounds = 6 - Consensus Length = 477 ( orig = 470 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1051 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1051 model... - numRounds = 6 - Consensus Length = 728 ( orig = 739 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 4 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4598 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4598 model... - numRounds = 5 - Consensus Length = 302 ( orig = 303 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 5123 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5123 model... - numRounds = 7 - Consensus Length = 670 ( orig = 681 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 6679 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-6679 model... - numRounds = 5 - Consensus Length = 1319 ( orig = 1320 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 506 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-506 model... - numRounds = 4 - Consensus Length = 59 ( orig = 59 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 9020 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-9020 model... - numRounds = 5 - Consensus Length = 624 ( orig = 621 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1099 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1099 model... - numRounds = 7 - Consensus Length = 2259 ( orig = 2230 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2136 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2136 model... - numRounds = 6 - Consensus Length = 698 ( orig = 712 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4652 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4652 model... - numRounds = 4 - Consensus Length = 270 ( orig = 271 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2140 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2140 model... - numRounds = 6 - Consensus Length = 292 ( orig = 293 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 929 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-929 model... - numRounds = 6 - Consensus Length = 902 ( orig = 929 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 6 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 418 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-418 model... - numRounds = 8 - Consensus Length = 438 ( orig = 437 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 7784 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-7784 model... - numRounds = 7 - Consensus Length = 1584 ( orig = 1584 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 29 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-29 model... - numRounds = 6 - Consensus Length = 339 ( orig = 324 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 6 ( orig = 7 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 4759 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4759 model... - numRounds = 5 - Consensus Length = 523 ( orig = 522 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1900 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1900 model... - numRounds = 5 - Consensus Length = 178 ( orig = 178 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 4629 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4629 model... - numRounds = 4 - Consensus Length = 170 ( orig = 171 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1442 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1442 model... - numRounds = 5 - Consensus Length = 718 ( orig = 718 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 4086 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4086 model... - numRounds = 9 - Consensus Length = 1008 ( orig = 1009 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 1948 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1948 model... - numRounds = 7 - Consensus Length = 487 ( orig = 493 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 5 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 611 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-611 model... - numRounds = 5 - Consensus Length = 300 ( orig = 299 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2206 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2206 model... - numRounds = 6 - Consensus Length = 227 ( orig = 227 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1142 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1142 model... - numRounds = 6 - Consensus Length = 1157 ( orig = 1132 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 9 ( orig = 9 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2516 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2516 model... - numRounds = 6 - Consensus Length = 357 ( orig = 354 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 868 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-868 model... - numRounds = 5 - Consensus Length = 748 ( orig = 748 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3566 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3566 model... - numRounds = 4 - Consensus Length = 276 ( orig = 276 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 10173 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-10173 model... - numRounds = 4 - Consensus Length = 343 ( orig = 343 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3849 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3849 model... - numRounds = 5 - Consensus Length = 398 ( orig = 398 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4484 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4484 model... - numRounds = 6 - Consensus Length = 483 ( orig = 493 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 6387 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-6387 model... - numRounds = 5 - Consensus Length = 633 ( orig = 633 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3133 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3133 model... - numRounds = 8 - Consensus Length = 508 ( orig = 499 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2146 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2146 model... - numRounds = 10 - Consensus Length = 1226 ( orig = 1278 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 5 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 226 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-226 model... - numRounds = 5 - Consensus Length = 442 ( orig = 445 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3533 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3533 model... - numRounds = 5 - Consensus Length = 653 ( orig = 652 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 834 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-834 model... - numRounds = 5 - Consensus Length = 700 ( orig = 705 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3467 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3467 model... - numRounds = 4 - Consensus Length = 403 ( orig = 403 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 5304 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5304 model... - numRounds = 9 - Consensus Length = 3197 ( orig = 3259 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time Processing RECON family: 2105 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2105 model... - numRounds = 5 - Consensus Length = 566 ( orig = 566 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2010 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2010 model... - numRounds = 6 - Consensus Length = 644 ( orig = 642 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4660 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4660 model... - numRounds = 5 - Consensus Length = 136 ( orig = 138 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3786 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3786 model... - numRounds = 5 - Consensus Length = 213 ( orig = 213 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 105 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-105 model... - numRounds = 6 - Consensus Length = 1103 ( orig = 1095 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 5013 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5013 model... - numRounds = 5 - Consensus Length = 759 ( orig = 756 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2633 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2633 model... - numRounds = 5 - Consensus Length = 274 ( orig = 277 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2558 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2558 model... - numRounds = 7 - Consensus Length = 1119 ( orig = 1144 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 540 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-540 model... - numRounds = 5 - Consensus Length = 1350 ( orig = 1317 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 718 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-718 model... - numRounds = 6 - Consensus Length = 418 ( orig = 394 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 66 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-66 model... - numRounds = 7 - Consensus Length = 807 ( orig = 793 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 11 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1391 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1391 model... - numRounds = 4 - Consensus Length = 468 ( orig = 468 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 6264 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-6264 model... - numRounds = 5 - Consensus Length = 852 ( orig = 854 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1380 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1380 model... - numRounds = 9 - Consensus Length = 670 ( orig = 673 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 541 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-541 model... - numRounds = 9 - Consensus Length = 1077 ( orig = 1063 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 486 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-486 model... - numRounds = 7 - Consensus Length = 2358 ( orig = 2358 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 1928 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1928 model... - numRounds = 5 - Consensus Length = 1274 ( orig = 1287 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1149 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1149 model... - numRounds = 5 - Consensus Length = 186 ( orig = 185 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2685 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2685 model... - numRounds = 7 - Consensus Length = 183 ( orig = 171 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 408 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-408 model... - numRounds = 4 - Consensus Length = 426 ( orig = 426 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4948 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4948 model... - numRounds = 7 - Consensus Length = 521 ( orig = 527 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 4615 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4615 model... - numRounds = 6 - Consensus Length = 292 ( orig = 265 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2378 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2378 model... - numRounds = 11 - Consensus Length = 1152 ( orig = 1170 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3386 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3386 model... - numRounds = 5 - Consensus Length = 659 ( orig = 656 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2872 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2872 model... - numRounds = 6 - Consensus Length = 423 ( orig = 405 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2502 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2502 model... - numRounds = 5 - Consensus Length = 1900 ( orig = 1896 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1998 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1998 model... - numRounds = 4 - Consensus Length = 57 ( orig = 57 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2484 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2484 model... - numRounds = 7 - Consensus Length = 828 ( orig = 820 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1660 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1660 model... - numRounds = 5 - Consensus Length = 708 ( orig = 710 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2703 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2703 model... - numRounds = 11 - Consensus Length = 807 ( orig = 823 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1752 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1752 model... - numRounds = 4 - Consensus Length = 420 ( orig = 421 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1673 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1673 model... - numRounds = 6 - Consensus Length = 1079 ( orig = 1083 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 6 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2635 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2635 model... - numRounds = 8 - Consensus Length = 2994 ( orig = 3001 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 4 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 7990 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-7990 model... - numRounds = 5 - Consensus Length = 476 ( orig = 478 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 6429 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-6429 model... - numRounds = 8 - Consensus Length = 1429 ( orig = 1458 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1637 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1637 model... - numRounds = 7 - Consensus Length = 1374 ( orig = 1355 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3642 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3642 model... - numRounds = 5 - Consensus Length = 999 ( orig = 1013 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 7 ( orig = 7 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2794 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2794 model... - numRounds = 5 - Consensus Length = 1057 ( orig = 1064 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1641 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1641 model... - numRounds = 4 - Consensus Length = 106 ( orig = 106 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1379 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1379 model... - numRounds = 7 - Consensus Length = 999 ( orig = 1013 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3461 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3461 model... - numRounds = 7 - Consensus Length = 414 ( orig = 415 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 83 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-83 model... - numRounds = 5 - Consensus Length = 191 ( orig = 191 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1554 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1554 model... - numRounds = 5 - Consensus Length = 4731 ( orig = 4692 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 5 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 495 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-495 model... - numRounds = 10 - Consensus Length = 406 ( orig = 381 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3363 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3363 model... - numRounds = 5 - Consensus Length = 1244 ( orig = 1230 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 676 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-676 model... - numRounds = 5 - Consensus Length = 313 ( orig = 312 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 4 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1684 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1684 model... - numRounds = 6 - Consensus Length = 316 ( orig = 301 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 4 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1252 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1252 model... - numRounds = 5 - Consensus Length = 1625 ( orig = 1629 ) - Avg Kimura Divergence = 0.02 - Unaligned sequences = 7 ( orig = 8 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1876 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1876 model... - numRounds = 7 - Consensus Length = 1370 ( orig = 1379 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 454 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-454 model... - numRounds = 4 - Consensus Length = 334 ( orig = 334 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 4833 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4833 model... - numRounds = 5 - Consensus Length = 1177 ( orig = 1176 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 6907 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-6907 model... - numRounds = 8 - Consensus Length = 1317 ( orig = 1306 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3348 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3348 model... - numRounds = 11 - Consensus Length = 877 ( orig = 838 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1865 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1865 model... - numRounds = 4 - Consensus Length = 150 ( orig = 152 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3713 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3713 model... - numRounds = 6 - Consensus Length = 511 ( orig = 526 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3586 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3586 model... - numRounds = 6 - Consensus Length = 383 ( orig = 380 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 904 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-904 model... - numRounds = 6 - Consensus Length = 436 ( orig = 445 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 5 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 4542 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4542 model... - numRounds = 5 - Consensus Length = 512 ( orig = 514 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 8163 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-8163 model... - numRounds = 6 - Consensus Length = 1453 ( orig = 1459 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 287 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-287 model... - numRounds = 6 - Consensus Length = 927 ( orig = 922 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 6 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1088 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1088 model... - numRounds = 7 - Consensus Length = 1293 ( orig = 1314 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 38 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-38 model... - numRounds = 6 - Consensus Length = 469 ( orig = 458 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2158 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2158 model... - numRounds = 6 - Consensus Length = 489 ( orig = 501 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3149 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3149 model... - numRounds = 7 - Consensus Length = 2953 ( orig = 3024 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 3536 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3536 model... - numRounds = 6 - Consensus Length = 500 ( orig = 498 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 6 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 710 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-710 model... - numRounds = 11 - Consensus Length = 1343 ( orig = 1372 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1268 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1268 model... - numRounds = 6 - Consensus Length = 790 ( orig = 795 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Family Refinement: 00:37:14 (hh:mm:ss) Elapsed Time Round Time: 11:20:10 (hh:mm:ss) Elapsed Time RepeatModeler Round # 6 ======================== Searching for Repeats -- Sampling from the database... - Gathering up to 100000000 bp -- Running TRFMask on the sequence... 31497 Tandem Repeats Masked -- Masking repeats from the previous rounds... - Masking 1 - 5 of 2993 - Masking 16 - 30 of 2993 - Masking 41 - 65 of 2993 - Masking 76 - 110 of 2993 - Masking 121 - 165 of 2993 - Masking 176 - 230 of 2993 - Masking 241 - 305 of 2993 - Masking 316 - 390 of 2993 - Masking 401 - 485 of 2993 - Masking 496 - 590 of 2993 - Masking 596 - 695 of 2993 - Masking 696 - 795 of 2993 - Masking 796 - 895 of 2993 - Masking 896 - 995 of 2993 - Masking 996 - 1095 of 2993 - Masking 1096 - 1195 of 2993 - Masking 1196 - 1295 of 2993 - Masking 1296 - 1395 of 2993 - Masking 1396 - 1495 of 2993 - Masking 1496 - 1595 of 2993 - Masking 1596 - 1695 of 2993 - Masking 1696 - 1795 of 2993 - Masking 1796 - 1895 of 2993 - Masking 1896 - 1995 of 2993 - Masking 1996 - 2095 of 2993 - Masking 2096 - 2195 of 2993 - Masking 2196 - 2295 of 2993 - Masking 2296 - 2395 of 2993 - Masking 2396 - 2495 of 2993 - Masking 2496 - 2595 of 2993 - Masking 2596 - 2695 of 2993 - Masking 2696 - 2795 of 2993 - Masking 2796 - 2895 of 2993 - Masking 2896 - 2993 of 2993 -- Sample Stats: Sample Size 119712276 bp Num Contigs Represented = 18 Non ambiguous bp: Initial: 100004231 bp After Masking: 51684162 bp Masked: 48.32 % -- Input Database Coverage: 263803605 bp out of 942353201 bp ( 27.99 % ) Sampling Time: 02:39:51 (hh:mm:ss) Elapsed Time Running all-by-other comparisons... 0% completed, 00:49:54 (hh:mm:ss) est. time remaining. 0% completed, 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(hh:mm:ss) est. time remaining. 99% completed, 00:0:40 (hh:mm:ss) est. time remaining. 99% completed, 00:0:39 (hh:mm:ss) est. time remaining. 99% completed, 00:0:38 (hh:mm:ss) est. time remaining. 99% completed, 00:0:37 (hh:mm:ss) est. time remaining. 99% completed, 00:0:36 (hh:mm:ss) est. time remaining. 99% completed, 00:0:35 (hh:mm:ss) est. time remaining. 99% completed, 00:0:34 (hh:mm:ss) est. time remaining. 99% completed, 00:0:34 (hh:mm:ss) est. time remaining. 99% completed, 00:0:33 (hh:mm:ss) est. time remaining. 99% completed, 00:0:32 (hh:mm:ss) est. time remaining. 99% completed, 00:0:31 (hh:mm:ss) est. time remaining. 99% completed, 00:0:31 (hh:mm:ss) est. time remaining. 99% completed, 00:0:30 (hh:mm:ss) est. time remaining. 99% completed, 00:0:29 (hh:mm:ss) est. time remaining. 99% completed, 00:0:28 (hh:mm:ss) est. time remaining. 99% completed, 00:0:28 (hh:mm:ss) est. time remaining. 99% completed, 00:0:27 (hh:mm:ss) est. time remaining. 99% completed, 00:0:26 (hh:mm:ss) est. time remaining. 99% completed, 00:0:25 (hh:mm:ss) est. time remaining. 99% completed, 00:0:25 (hh:mm:ss) est. time remaining. 99% completed, 00:0:24 (hh:mm:ss) est. time remaining. 99% completed, 00:0:23 (hh:mm:ss) est. time remaining. 99% completed, 00:0:22 (hh:mm:ss) est. time remaining. 99% completed, 00:0:22 (hh:mm:ss) est. time remaining. 99% completed, 00:0:21 (hh:mm:ss) est. time remaining. 99% completed, 00:0:21 (hh:mm:ss) est. time remaining. 99% completed, 00:0:20 (hh:mm:ss) est. time remaining. 99% completed, 00:0:19 (hh:mm:ss) est. time remaining. 99% completed, 00:0:19 (hh:mm:ss) est. time remaining. 99% completed, 00:0:18 (hh:mm:ss) est. time remaining. 99% completed, 00:0:18 (hh:mm:ss) est. time remaining. 99% completed, 00:0:17 (hh:mm:ss) est. time remaining. 99% completed, 00:0:16 (hh:mm:ss) est. time remaining. 99% completed, 00:0:16 (hh:mm:ss) est. time remaining. 99% completed, 00:0:15 (hh:mm:ss) est. time remaining. 99% completed, 00:0:15 (hh:mm:ss) est. time remaining. 99% completed, 00:0:14 (hh:mm:ss) est. time remaining. 99% completed, 00:0:14 (hh:mm:ss) est. time remaining. 99% completed, 00:0:13 (hh:mm:ss) est. time remaining. 99% completed, 00:0:13 (hh:mm:ss) est. time remaining. 99% completed, 00:0:12 (hh:mm:ss) est. time remaining. 99% completed, 00:0:12 (hh:mm:ss) est. time remaining. 99% completed, 00:0:11 (hh:mm:ss) est. time remaining. 99% completed, 00:0:11 (hh:mm:ss) est. time remaining. 99% completed, 00:0:10 (hh:mm:ss) est. time remaining. 99% completed, 00:0:10 (hh:mm:ss) est. time remaining. 99% completed, 00:0:09 (hh:mm:ss) est. time remaining. 99% completed, 00:0:09 (hh:mm:ss) est. time remaining. 99% completed, 00:0:09 (hh:mm:ss) est. time remaining. 99% completed, 00:0:08 (hh:mm:ss) est. time remaining. 99% completed, 00:0:08 (hh:mm:ss) est. time remaining. 99% completed, 00:0:07 (hh:mm:ss) est. time remaining. 99% completed, 00:0:07 (hh:mm:ss) est. time remaining. 99% completed, 00:0:06 (hh:mm:ss) est. time remaining. 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completed, 00:0:00 (hh:mm:ss) est. time remaining. Comparison Time: 12:08:09 (hh:mm:ss) Elapsed Time, 234865 HSPs Collected - RECON: Running imagespread.. RECON Elapsed: 00:00:01 (hh:mm:ss) Elapsed Time - RECON: Running initial definition of elements ( eledef ).. RECON Elapsed: 00:00:05 (hh:mm:ss) Elapsed Time - RECON: Running re-definition of elements ( eleredef ).. RECON Elapsed: 00:03:54 (hh:mm:ss) Elapsed Time - RECON: Running re-definition of edges ( edgeredef ).. RECON Elapsed: 00:08:16 (hh:mm:ss) Elapsed Time - RECON: Running family definition ( famdef ).. RECON Elapsed: 00:00:02 (hh:mm:ss) Elapsed Time - Obtaining element sequences Number of families returned by RECON: 12569 Processing families with greater than 15 elements Processing RECON family: 760 - Saving elements to a file... - 128 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-760 model... - numRounds = 7 - Consensus Length = 265 ( orig = 269 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 21 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time Processing RECON family: 244 - Saving elements to a file... - 113 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-244 model... - numRounds = 5 - Consensus Length = 423 ( orig = 423 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 16 ( orig = 16 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time Processing RECON family: 1084 - Saving elements to a file... - 89 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1084 model... - numRounds = 5 - Consensus Length = 449 ( orig = 451 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 20 ( orig = 23 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time Processing RECON family: 354 - Saving elements to a file... - 80 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-354 model... - numRounds = 6 - Consensus Length = 418 ( orig = 425 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 11 ( orig = 20 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1824 - Saving elements to a file... - 79 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1824 model... - numRounds = 5 - Consensus Length = 225 ( orig = 226 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 20 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 4292 - Saving elements to a file... - 71 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4292 model... - numRounds = 5 - Consensus Length = 60 ( orig = 60 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 12 ( orig = 18 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 32 - Saving elements to a file... - 65 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-32 model... - numRounds = 9 - Consensus Length = 4208 ( orig = 4149 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 24 ( orig = 41 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time Processing RECON family: 59 - Saving elements to a file... - 63 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-59 model... - numRounds = 8 - Consensus Length = 606 ( orig = 607 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 11 ( orig = 33 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time Processing RECON family: 455 - Saving elements to a file... - 59 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-455 model... - numRounds = 6 - Consensus Length = 1074 ( orig = 1081 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 14 ( orig = 14 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1622 - Saving elements to a file... - 54 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1622 model... - numRounds = 6 - Consensus Length = 691 ( orig = 692 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 12 ( orig = 13 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 21 - Saving elements to a file... - 53 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-21 model... - numRounds = 6 - Consensus Length = 1683 ( orig = 1688 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 9 ( orig = 11 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 3158 - Saving elements to a file... - 52 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3158 model... - numRounds = 5 - Consensus Length = 372 ( orig = 362 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 7 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 442 - Saving elements to a file... - 52 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-442 model... - numRounds = 6 - Consensus Length = 1462 ( orig = 1464 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 19 ( orig = 21 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time Processing RECON family: 956 - Saving elements to a file... - 52 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-956 model... - numRounds = 9 - Consensus Length = 7330 ( orig = 7404 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:26 Elapsed Time Refinement: 00:00:26 (hh:mm:ss) Elapsed Time Processing RECON family: 1729 - Saving elements to a file... - 52 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1729 model... - numRounds = 5 - Consensus Length = 930 ( orig = 930 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 29 ( orig = 28 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 223 - Saving elements to a file... - 50 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-223 model... - numRounds = 11 - Consensus Length = 2242 ( orig = 2246 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 33 ( orig = 34 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 1439 - Saving elements to a file... - 49 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1439 model... - numRounds = 7 - Consensus Length = 649 ( orig = 640 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 14 ( orig = 18 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 6815 - Saving elements to a file... - 48 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-6815 model... - numRounds = 6 - Consensus Length = 317 ( orig = 315 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 9 ( orig = 9 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 419 - Saving elements to a file... - 47 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-419 model... - numRounds = 6 - Consensus Length = 177 ( orig = 181 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 11 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1041 - Saving elements to a file... - 47 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1041 model... - numRounds = 8 - Consensus Length = 190 ( orig = 195 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 10 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 572 - Saving elements to a file... - 47 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-572 model... - numRounds = 8 - Consensus Length = 284 ( orig = 289 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 17 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1020 - Saving elements to a file... - 47 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1020 model... - numRounds = 11 - Consensus Length = 477 ( orig = 486 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 11 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 355 - Saving elements to a file... - 46 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-355 model... - numRounds = 5 - Consensus Length = 518 ( orig = 541 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 11 ( orig = 17 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 491 - Saving elements to a file... - 43 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-491 model... - numRounds = 11 - Consensus Length = 431 ( orig = 432 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 8 ( orig = 23 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 1090 - Saving elements to a file... - 43 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1090 model... - numRounds = 6 - Consensus Length = 1335 ( orig = 1321 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 8 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 62 - Saving elements to a file... - 43 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-62 model... - numRounds = 9 - Consensus Length = 755 ( orig = 759 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 5 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 3783 - Saving elements to a file... - 43 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3783 model... - numRounds = 5 - Consensus Length = 258 ( orig = 257 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 415 - Saving elements to a file... - 42 elements found. Element Gathering: 00:00:01 (hh:mm:ss) Elapsed Time Refining family-415 model... - numRounds = 8 - Consensus Length = 626 ( orig = 617 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 9 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 5473 - Saving elements to a file... - 41 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5473 model... - numRounds = 4 - Consensus Length = 67 ( orig = 67 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 4 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1823 - Saving elements to a file... - 39 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1823 model... - numRounds = 7 - Consensus Length = 396 ( orig = 396 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 10 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1628 - Saving elements to a file... - 39 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1628 model... - numRounds = 5 - Consensus Length = 808 ( orig = 809 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 7 ( orig = 6 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 4944 - Saving elements to a file... - 39 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4944 model... - numRounds = 5 - Consensus Length = 168 ( orig = 167 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3113 - Saving elements to a file... - 39 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3113 model... - numRounds = 8 - Consensus Length = 4827 ( orig = 4858 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 7 ( orig = 9 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time Processing RECON family: 691 - Saving elements to a file... - 39 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-691 model... - numRounds = 5 - Consensus Length = 465 ( orig = 461 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 366 - Saving elements to a file... - 39 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-366 model... - numRounds = 8 - Consensus Length = 383 ( orig = 380 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 7 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 230 - Saving elements to a file... - 39 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-230 model... - numRounds = 6 - Consensus Length = 54 ( orig = 54 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 5 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3342 - Saving elements to a file... - 38 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3342 model... - numRounds = 10 - Consensus Length = 1392 ( orig = 1383 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 11 ( orig = 12 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time Processing RECON family: 4347 - Saving elements to a file... - 38 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4347 model... - numRounds = 6 - Consensus Length = 370 ( orig = 369 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4890 - Saving elements to a file... - 38 elements found. Element Gathering: 00:00:01 (hh:mm:ss) Elapsed Time Refining family-4890 model... - numRounds = 9 - Consensus Length = 385 ( orig = 387 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 5 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 88 - Saving elements to a file... - 38 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-88 model... - numRounds = 8 - Consensus Length = 541 ( orig = 541 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 870 - Saving elements to a file... - 38 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-870 model... - numRounds = 6 - Consensus Length = 621 ( orig = 620 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 8 ( orig = 10 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 3170 - Saving elements to a file... - 37 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3170 model... - numRounds = 6 - Consensus Length = 1433 ( orig = 1433 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 11 ( orig = 11 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 4699 - Saving elements to a file... - 37 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4699 model... - numRounds = 6 - Consensus Length = 656 ( orig = 645 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 839 - Saving elements to a file... - 37 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-839 model... - numRounds = 11 - Consensus Length = 1638 ( orig = 1592 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 11 ( orig = 13 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time Processing RECON family: 9148 - Saving elements to a file... - 37 elements found. Element Gathering: 00:00:01 (hh:mm:ss) Elapsed Time Refining family-9148 model... - numRounds = 11 - Consensus Length = 1036 ( orig = 1073 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:29 Elapsed Time Refinement: 00:00:29 (hh:mm:ss) Elapsed Time Processing RECON family: 6834 - Saving elements to a file... - 37 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-6834 model... - numRounds = 7 - Consensus Length = 1093 ( orig = 1078 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 873 - Saving elements to a file... - 37 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-873 model... - numRounds = 5 - Consensus Length = 606 ( orig = 606 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1868 - Saving elements to a file... - 36 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1868 model... - numRounds = 9 - Consensus Length = 1048 ( orig = 1029 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 6 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 2298 - Saving elements to a file... - 36 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2298 model... - numRounds = 7 - Consensus Length = 1205 ( orig = 1201 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 6 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 652 - Saving elements to a file... - 36 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-652 model... - numRounds = 8 - Consensus Length = 668 ( orig = 671 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 8 ( orig = 9 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 477 - Saving elements to a file... - 35 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-477 model... - numRounds = 11 - Consensus Length = 6798 ( orig = 6801 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 6 ) Build Consensus: 0:0:26 Elapsed Time Refinement: 00:00:26 (hh:mm:ss) Elapsed Time Processing RECON family: 629 - Saving elements to a file... - 35 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-629 model... - numRounds = 5 - Consensus Length = 91 ( orig = 90 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 9 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 177 - Saving elements to a file... - 35 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-177 model... - numRounds = 6 - Consensus Length = 314 ( orig = 312 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 914 - Saving elements to a file... - 35 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-914 model... - numRounds = 11 - Consensus Length = 6252 ( orig = 6241 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 5 ) Build Consensus: 0:0:34 Elapsed Time Refinement: 00:00:34 (hh:mm:ss) Elapsed Time Processing RECON family: 994 - Saving elements to a file... - 35 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-994 model... - numRounds = 6 - Consensus Length = 593 ( orig = 609 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1457 - Saving elements to a file... - 35 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1457 model... - numRounds = 9 - Consensus Length = 1179 ( orig = 1175 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 250 - Saving elements to a file... - 34 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-250 model... - numRounds = 5 - Consensus Length = 449 ( orig = 448 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 7 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 804 - Saving elements to a file... - 34 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-804 model... - numRounds = 6 - Consensus Length = 816 ( orig = 815 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 12 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1781 - Saving elements to a file... - 34 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1781 model... - numRounds = 5 - Consensus Length = 575 ( orig = 573 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 5 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 396 - Saving elements to a file... - 34 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-396 model... - numRounds = 4 - Consensus Length = 231 ( orig = 231 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 5 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2827 - Saving elements to a file... - 33 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2827 model... - numRounds = 7 - Consensus Length = 438 ( orig = 456 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 8 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 476 - Saving elements to a file... - 33 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-476 model... - numRounds = 7 - Consensus Length = 295 ( orig = 296 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 5 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1625 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1625 model... - numRounds = 7 - Consensus Length = 3192 ( orig = 3124 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 14 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 133 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-133 model... - numRounds = 8 - Consensus Length = 2165 ( orig = 2129 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 9 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time Processing RECON family: 4768 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4768 model... - numRounds = 7 - Consensus Length = 294 ( orig = 292 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3553 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3553 model... - numRounds = 7 - Consensus Length = 551 ( orig = 542 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3585 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3585 model... - numRounds = 8 - Consensus Length = 414 ( orig = 413 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 6 ( orig = 6 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3107 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3107 model... - numRounds = 5 - Consensus Length = 753 ( orig = 751 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2730 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2730 model... - numRounds = 8 - Consensus Length = 1091 ( orig = 1089 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 685 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-685 model... - numRounds = 5 - Consensus Length = 232 ( orig = 232 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 6 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2466 - Saving elements to a file... - 32 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2466 model... - numRounds = 5 - Consensus Length = 788 ( orig = 791 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 4 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2439 - Saving elements to a file... - 31 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2439 model... - numRounds = 4 - Consensus Length = 40 ( orig = 40 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 4808 - Saving elements to a file... - 31 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4808 model... - numRounds = 6 - Consensus Length = 281 ( orig = 282 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 504 - Saving elements to a file... - 31 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-504 model... - numRounds = 5 - Consensus Length = 1015 ( orig = 1016 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 9 ( orig = 8 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 802 - Saving elements to a file... - 31 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-802 model... - numRounds = 9 - Consensus Length = 233 ( orig = 237 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 341 - Saving elements to a file... - 31 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-341 model... - numRounds = 7 - Consensus Length = 1333 ( orig = 1326 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 3 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 916 - Saving elements to a file... - 31 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-916 model... - numRounds = 6 - Consensus Length = 434 ( orig = 431 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1665 - Saving elements to a file... - 31 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1665 model... - numRounds = 6 - Consensus Length = 782 ( orig = 762 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 732 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-732 model... - numRounds = 6 - Consensus Length = 249 ( orig = 247 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 734 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-734 model... - numRounds = 5 - Consensus Length = 1072 ( orig = 1077 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 228 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-228 model... - numRounds = 5 - Consensus Length = 720 ( orig = 721 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 768 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-768 model... - numRounds = 6 - Consensus Length = 671 ( orig = 680 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 6 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 816 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-816 model... - numRounds = 6 - Consensus Length = 2143 ( orig = 2183 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 584 - Saving elements to a file... - 30 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-584 model... - numRounds = 9 - Consensus Length = 1211 ( orig = 1191 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 5 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 493 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-493 model... - numRounds = 6 - Consensus Length = 192 ( orig = 194 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2114 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2114 model... - numRounds = 6 - Consensus Length = 413 ( orig = 413 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 7 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3333 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3333 model... - numRounds = 7 - Consensus Length = 5475 ( orig = 5489 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:16 Elapsed Time Refinement: 00:00:16 (hh:mm:ss) Elapsed Time Processing RECON family: 218 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-218 model... - numRounds = 4 - Consensus Length = 695 ( orig = 695 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 482 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-482 model... - numRounds = 6 - Consensus Length = 183 ( orig = 182 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 11 ( orig = 15 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3140 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3140 model... - numRounds = 6 - Consensus Length = 198 ( orig = 215 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 33 - Saving elements to a file... - 29 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-33 model... - numRounds = 5 - Consensus Length = 446 ( orig = 446 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 82 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-82 model... - numRounds = 4 - Consensus Length = 129 ( orig = 129 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2765 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2765 model... - numRounds = 5 - Consensus Length = 248 ( orig = 239 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 6 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 856 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-856 model... - numRounds = 6 - Consensus Length = 1302 ( orig = 1289 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1276 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1276 model... - numRounds = 5 - Consensus Length = 607 ( orig = 590 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2303 - Saving elements to a file... - 28 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2303 model... - numRounds = 6 - Consensus Length = 1160 ( orig = 1163 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 5524 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5524 model... - numRounds = 6 - Consensus Length = 1146 ( orig = 1142 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1157 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1157 model... - numRounds = 5 - Consensus Length = 184 ( orig = 185 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1113 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1113 model... - numRounds = 11 - Consensus Length = 340 ( orig = 338 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 283 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-283 model... - numRounds = 7 - Consensus Length = 418 ( orig = 408 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 11 ( orig = 12 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4086 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4086 model... - numRounds = 5 - Consensus Length = 182 ( orig = 187 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1238 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1238 model... - numRounds = 5 - Consensus Length = 623 ( orig = 622 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3052 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3052 model... - numRounds = 6 - Consensus Length = 1058 ( orig = 1062 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 10 ( orig = 12 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 531 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-531 model... - numRounds = 9 - Consensus Length = 229 ( orig = 231 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 222 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-222 model... - numRounds = 9 - Consensus Length = 648 ( orig = 645 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1410 - Saving elements to a file... - 27 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1410 model... - numRounds = 6 - Consensus Length = 537 ( orig = 560 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2025 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2025 model... - numRounds = 7 - Consensus Length = 289 ( orig = 288 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3056 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3056 model... - numRounds = 5 - Consensus Length = 677 ( orig = 680 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3060 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3060 model... - numRounds = 5 - Consensus Length = 1676 ( orig = 1678 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 5 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2994 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2994 model... - numRounds = 11 - Consensus Length = 3623 ( orig = 3594 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 4 ) Build Consensus: 0:0:11 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time Processing RECON family: 805 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-805 model... - numRounds = 11 - Consensus Length = 2951 ( orig = 2946 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:19 Elapsed Time Refinement: 00:00:19 (hh:mm:ss) Elapsed Time Processing RECON family: 445 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-445 model... - numRounds = 6 - Consensus Length = 360 ( orig = 380 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1120 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1120 model... - numRounds = 5 - Consensus Length = 1090 ( orig = 1051 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 6 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1244 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1244 model... - numRounds = 7 - Consensus Length = 232 ( orig = 233 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 6333 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-6333 model... - numRounds = 7 - Consensus Length = 2785 ( orig = 2802 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time Processing RECON family: 1526 - Saving elements to a file... - 26 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1526 model... - numRounds = 5 - Consensus Length = 244 ( orig = 243 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2657 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:01 (hh:mm:ss) Elapsed Time Refining family-2657 model... - numRounds = 5 - Consensus Length = 1133 ( orig = 1137 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 969 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-969 model... - numRounds = 6 - Consensus Length = 1027 ( orig = 1022 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1155 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1155 model... - numRounds = 5 - Consensus Length = 464 ( orig = 464 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 986 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-986 model... - numRounds = 7 - Consensus Length = 542 ( orig = 537 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 6 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1074 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1074 model... - numRounds = 5 - Consensus Length = 374 ( orig = 374 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 4925 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4925 model... - numRounds = 5 - Consensus Length = 737 ( orig = 737 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 5 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 95 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-95 model... - numRounds = 8 - Consensus Length = 934 ( orig = 918 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 5 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 3185 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3185 model... - numRounds = 5 - Consensus Length = 925 ( orig = 926 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1236 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1236 model... - numRounds = 5 - Consensus Length = 477 ( orig = 480 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2610 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2610 model... - numRounds = 4 - Consensus Length = 151 ( orig = 151 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 6 ( orig = 6 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3899 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3899 model... - numRounds = 5 - Consensus Length = 257 ( orig = 252 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 5 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3224 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3224 model... - numRounds = 6 - Consensus Length = 611 ( orig = 608 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 5 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 958 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-958 model... - numRounds = 8 - Consensus Length = 235 ( orig = 237 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2943 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2943 model... - numRounds = 4 - Consensus Length = 246 ( orig = 245 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 478 - Saving elements to a file... - 25 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-478 model... - numRounds = 8 - Consensus Length = 1047 ( orig = 1002 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 6 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 616 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-616 model... - numRounds = 11 - Consensus Length = 1044 ( orig = 1074 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 6 ( orig = 13 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 154 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-154 model... - numRounds = 4 - Consensus Length = 252 ( orig = 252 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3369 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3369 model... - numRounds = 8 - Consensus Length = 348 ( orig = 356 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1550 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1550 model... - numRounds = 5 - Consensus Length = 472 ( orig = 473 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 7 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2697 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2697 model... - numRounds = 4 - Consensus Length = 298 ( orig = 298 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1213 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1213 model... - numRounds = 9 - Consensus Length = 659 ( orig = 653 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 210 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-210 model... - numRounds = 8 - Consensus Length = 1170 ( orig = 1103 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 15 ( orig = 16 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1260 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1260 model... - numRounds = 5 - Consensus Length = 290 ( orig = 297 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2128 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2128 model... - numRounds = 4 - Consensus Length = 570 ( orig = 570 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3315 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3315 model... - numRounds = 5 - Consensus Length = 480 ( orig = 482 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 676 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-676 model... - numRounds = 5 - Consensus Length = 376 ( orig = 376 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 84 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-84 model... - numRounds = 5 - Consensus Length = 258 ( orig = 258 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 119 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-119 model... - numRounds = 7 - Consensus Length = 332 ( orig = 336 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1981 - Saving elements to a file... - 24 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1981 model... - numRounds = 8 - Consensus Length = 547 ( orig = 546 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1221 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1221 model... - numRounds = 11 - Consensus Length = 1302 ( orig = 1302 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2193 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2193 model... - numRounds = 7 - Consensus Length = 613 ( orig = 611 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3084 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3084 model... - numRounds = 5 - Consensus Length = 353 ( orig = 366 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 5609 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5609 model... - numRounds = 6 - Consensus Length = 550 ( orig = 554 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1841 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1841 model... - numRounds = 5 - Consensus Length = 958 ( orig = 959 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1986 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1986 model... - numRounds = 6 - Consensus Length = 1641 ( orig = 1641 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 4 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2922 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2922 model... - numRounds = 8 - Consensus Length = 1196 ( orig = 1191 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 45 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-45 model... - numRounds = 6 - Consensus Length = 330 ( orig = 340 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 4 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4002 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4002 model... - numRounds = 5 - Consensus Length = 595 ( orig = 599 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 648 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-648 model... - numRounds = 6 - Consensus Length = 1481 ( orig = 1479 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 39 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-39 model... - numRounds = 7 - Consensus Length = 1718 ( orig = 1714 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 4 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 5292 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5292 model... - numRounds = 5 - Consensus Length = 238 ( orig = 238 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1262 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1262 model... - numRounds = 7 - Consensus Length = 579 ( orig = 579 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 6 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4921 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4921 model... - numRounds = 5 - Consensus Length = 164 ( orig = 169 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1876 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1876 model... - numRounds = 5 - Consensus Length = 385 ( orig = 390 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1600 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1600 model... - numRounds = 4 - Consensus Length = 218 ( orig = 218 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1722 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1722 model... - numRounds = 5 - Consensus Length = 719 ( orig = 720 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1232 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1232 model... - numRounds = 3 - Consensus Length = 56 ( orig = 56 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time Processing RECON family: 276 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:01 (hh:mm:ss) Elapsed Time Refining family-276 model... - numRounds = 6 - Consensus Length = 2310 ( orig = 2296 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 568 - Saving elements to a file... - 23 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-568 model... - numRounds = 5 - Consensus Length = 2561 ( orig = 2560 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 5 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 3268 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3268 model... - numRounds = 8 - Consensus Length = 861 ( orig = 863 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 5875 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5875 model... - numRounds = 5 - Consensus Length = 283 ( orig = 284 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2400 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:01 (hh:mm:ss) Elapsed Time Refining family-2400 model... - numRounds = 8 - Consensus Length = 1055 ( orig = 1055 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 4 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2249 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2249 model... - numRounds = 5 - Consensus Length = 923 ( orig = 924 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 344 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-344 model... - numRounds = 6 - Consensus Length = 3349 ( orig = 3353 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 8 ( orig = 8 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 3236 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3236 model... - numRounds = 7 - Consensus Length = 2515 ( orig = 2471 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 1484 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1484 model... - numRounds = 5 - Consensus Length = 1656 ( orig = 1657 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1937 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1937 model... - numRounds = 7 - Consensus Length = 321 ( orig = 317 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 4 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3011 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3011 model... - numRounds = 6 - Consensus Length = 580 ( orig = 575 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2842 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2842 model... - numRounds = 4 - Consensus Length = 424 ( orig = 423 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2754 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2754 model... - numRounds = 6 - Consensus Length = 427 ( orig = 425 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 521 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-521 model... - numRounds = 6 - Consensus Length = 3888 ( orig = 3908 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 8 ( orig = 9 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 700 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-700 model... - numRounds = 6 - Consensus Length = 688 ( orig = 688 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 5216 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5216 model... - numRounds = 7 - Consensus Length = 419 ( orig = 417 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 534 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-534 model... - numRounds = 5 - Consensus Length = 433 ( orig = 410 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2268 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2268 model... - numRounds = 5 - Consensus Length = 177 ( orig = 177 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 10 ( orig = 11 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2733 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2733 model... - numRounds = 5 - Consensus Length = 319 ( orig = 314 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1220 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1220 model... - numRounds = 5 - Consensus Length = 140 ( orig = 141 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 4 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3786 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3786 model... - numRounds = 5 - Consensus Length = 228 ( orig = 230 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1203 - Saving elements to a file... - 22 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1203 model... - numRounds = 4 - Consensus Length = 430 ( orig = 428 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 5188 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5188 model... - numRounds = 5 - Consensus Length = 1760 ( orig = 1761 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 957 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-957 model... - numRounds = 4 - Consensus Length = 354 ( orig = 353 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1019 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1019 model... - numRounds = 9 - Consensus Length = 731 ( orig = 742 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2218 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2218 model... - numRounds = 6 - Consensus Length = 1767 ( orig = 1759 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 13 ( orig = 13 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 175 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-175 model... - numRounds = 5 - Consensus Length = 235 ( orig = 238 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 800 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-800 model... - numRounds = 4 - Consensus Length = 252 ( orig = 259 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 5232 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5232 model... - numRounds = 11 - Consensus Length = 620 ( orig = 605 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 1042 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1042 model... - numRounds = 5 - Consensus Length = 166 ( orig = 166 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3248 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3248 model... - numRounds = 5 - Consensus Length = 1388 ( orig = 1387 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 6580 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-6580 model... - numRounds = 4 - Consensus Length = 168 ( orig = 168 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2101 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2101 model... - numRounds = 11 - Consensus Length = 2002 ( orig = 1989 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time Processing RECON family: 2678 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2678 model... - numRounds = 5 - Consensus Length = 392 ( orig = 392 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 7 ( orig = 8 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2561 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2561 model... - numRounds = 5 - Consensus Length = 893 ( orig = 890 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1030 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1030 model... - numRounds = 5 - Consensus Length = 98 ( orig = 98 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3182 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3182 model... - numRounds = 5 - Consensus Length = 723 ( orig = 718 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 9 ( orig = 9 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1231 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1231 model... - numRounds = 4 - Consensus Length = 440 ( orig = 440 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1673 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1673 model... - numRounds = 4 - Consensus Length = 158 ( orig = 158 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1580 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1580 model... - numRounds = 5 - Consensus Length = 1094 ( orig = 1098 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 9 ( orig = 10 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2484 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2484 model... - numRounds = 5 - Consensus Length = 439 ( orig = 438 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2219 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2219 model... - numRounds = 6 - Consensus Length = 3709 ( orig = 3682 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 514 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-514 model... - numRounds = 5 - Consensus Length = 228 ( orig = 227 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 240 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-240 model... - numRounds = 4 - Consensus Length = 883 ( orig = 883 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1365 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1365 model... - numRounds = 6 - Consensus Length = 728 ( orig = 733 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1828 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1828 model... - numRounds = 4 - Consensus Length = 618 ( orig = 618 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2228 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2228 model... - numRounds = 11 - Consensus Length = 776 ( orig = 779 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 7 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 968 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-968 model... - numRounds = 5 - Consensus Length = 1064 ( orig = 1061 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1249 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1249 model... - numRounds = 6 - Consensus Length = 251 ( orig = 256 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2254 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2254 model... - numRounds = 9 - Consensus Length = 560 ( orig = 570 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1544 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1544 model... - numRounds = 10 - Consensus Length = 355 ( orig = 374 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 4240 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4240 model... - numRounds = 5 - Consensus Length = 527 ( orig = 530 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 9 ( orig = 12 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 8011 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-8011 model... - numRounds = 4 - Consensus Length = 87 ( orig = 86 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2996 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2996 model... - numRounds = 5 - Consensus Length = 182 ( orig = 182 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3591 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3591 model... - numRounds = 7 - Consensus Length = 1300 ( orig = 1298 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 538 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-538 model... - numRounds = 6 - Consensus Length = 3737 ( orig = 3735 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:7 Elapsed Time Refinement: 00:00:07 (hh:mm:ss) Elapsed Time Processing RECON family: 3833 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3833 model... - numRounds = 5 - Consensus Length = 853 ( orig = 852 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1659 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1659 model... - numRounds = 6 - Consensus Length = 488 ( orig = 489 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2340 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2340 model... - numRounds = 7 - Consensus Length = 559 ( orig = 535 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 481 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-481 model... - numRounds = 6 - Consensus Length = 261 ( orig = 261 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 642 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-642 model... - numRounds = 5 - Consensus Length = 129 ( orig = 129 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3936 - Saving elements to a file... - 21 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3936 model... - numRounds = 6 - Consensus Length = 1308 ( orig = 1308 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1038 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1038 model... - numRounds = 10 - Consensus Length = 1253 ( orig = 1260 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 1146 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1146 model... - numRounds = 5 - Consensus Length = 614 ( orig = 597 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 87 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-87 model... - numRounds = 6 - Consensus Length = 1608 ( orig = 1601 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 4802 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4802 model... - numRounds = 4 - Consensus Length = 80 ( orig = 80 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 281 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-281 model... - numRounds = 6 - Consensus Length = 869 ( orig = 863 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 583 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-583 model... - numRounds = 4 - Consensus Length = 240 ( orig = 240 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 739 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-739 model... - numRounds = 4 - Consensus Length = 155 ( orig = 155 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1416 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1416 model... - numRounds = 4 - Consensus Length = 468 ( orig = 468 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3624 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3624 model... - numRounds = 6 - Consensus Length = 296 ( orig = 296 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2927 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2927 model... - numRounds = 6 - Consensus Length = 400 ( orig = 401 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 5 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 868 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-868 model... - numRounds = 4 - Consensus Length = 65 ( orig = 66 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2583 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2583 model... - numRounds = 5 - Consensus Length = 1069 ( orig = 1075 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3648 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3648 model... - numRounds = 4 - Consensus Length = 70 ( orig = 70 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 11 ( orig = 11 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 65 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-65 model... - numRounds = 6 - Consensus Length = 1047 ( orig = 1047 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 4267 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4267 model... - numRounds = 5 - Consensus Length = 1043 ( orig = 1042 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 8 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 403 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-403 model... - numRounds = 11 - Consensus Length = 331 ( orig = 338 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 5 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3191 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3191 model... - numRounds = 4 - Consensus Length = 191 ( orig = 193 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1013 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1013 model... - numRounds = 6 - Consensus Length = 2533 ( orig = 2533 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 51 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-51 model... - numRounds = 7 - Consensus Length = 718 ( orig = 724 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 561 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-561 model... - numRounds = 5 - Consensus Length = 520 ( orig = 538 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 834 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-834 model... - numRounds = 7 - Consensus Length = 962 ( orig = 976 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 292 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-292 model... - numRounds = 5 - Consensus Length = 671 ( orig = 670 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 10 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-10 model... - numRounds = 6 - Consensus Length = 640 ( orig = 645 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 7167 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-7167 model... - numRounds = 11 - Consensus Length = 1325 ( orig = 1299 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 6 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 6983 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-6983 model... - numRounds = 7 - Consensus Length = 656 ( orig = 644 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2642 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2642 model... - numRounds = 5 - Consensus Length = 67 ( orig = 66 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2395 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2395 model... - numRounds = 5 - Consensus Length = 1105 ( orig = 1105 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 992 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-992 model... - numRounds = 8 - Consensus Length = 1120 ( orig = 1134 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 5 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 5506 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5506 model... - numRounds = 4 - Consensus Length = 62 ( orig = 62 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 151 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-151 model... - numRounds = 11 - Consensus Length = 4250 ( orig = 4252 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:13 Elapsed Time Refinement: 00:00:13 (hh:mm:ss) Elapsed Time Processing RECON family: 6038 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-6038 model... - numRounds = 6 - Consensus Length = 203 ( orig = 205 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 280 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-280 model... - numRounds = 6 - Consensus Length = 287 ( orig = 284 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 4 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1073 - Saving elements to a file... - 20 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1073 model... - numRounds = 6 - Consensus Length = 2819 ( orig = 2818 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 6712 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-6712 model... - numRounds = 4 - Consensus Length = 425 ( orig = 425 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 5738 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5738 model... - numRounds = 5 - Consensus Length = 498 ( orig = 496 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2605 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:01 (hh:mm:ss) Elapsed Time Refining family-2605 model... - numRounds = 6 - Consensus Length = 148 ( orig = 148 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 665 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-665 model... - numRounds = 9 - Consensus Length = 1143 ( orig = 1142 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 5 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2510 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2510 model... - numRounds = 11 - Consensus Length = 332 ( orig = 332 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2279 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2279 model... - numRounds = 4 - Consensus Length = 205 ( orig = 205 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 650 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-650 model... - numRounds = 4 - Consensus Length = 104 ( orig = 104 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 488 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-488 model... - numRounds = 5 - Consensus Length = 3355 ( orig = 3372 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 285 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-285 model... - numRounds = 11 - Consensus Length = 1480 ( orig = 1466 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 3 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 1751 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1751 model... - numRounds = 5 - Consensus Length = 225 ( orig = 228 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2255 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2255 model... - numRounds = 6 - Consensus Length = 2052 ( orig = 2053 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 3058 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3058 model... - numRounds = 5 - Consensus Length = 134 ( orig = 134 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 255 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-255 model... - numRounds = 5 - Consensus Length = 149 ( orig = 149 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 112 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-112 model... - numRounds = 5 - Consensus Length = 329 ( orig = 333 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 946 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-946 model... - numRounds = 5 - Consensus Length = 291 ( orig = 294 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 6 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2022 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2022 model... - numRounds = 7 - Consensus Length = 588 ( orig = 605 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2068 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2068 model... - numRounds = 7 - Consensus Length = 1433 ( orig = 1425 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2793 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2793 model... - numRounds = 7 - Consensus Length = 4004 ( orig = 4012 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time Processing RECON family: 1245 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1245 model... - numRounds = 11 - Consensus Length = 476 ( orig = 495 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 180 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-180 model... - numRounds = 6 - Consensus Length = 740 ( orig = 739 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4377 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4377 model... - numRounds = 8 - Consensus Length = 4069 ( orig = 4030 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time Processing RECON family: 328 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-328 model... - numRounds = 5 - Consensus Length = 579 ( orig = 580 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1200 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1200 model... - numRounds = 5 - Consensus Length = 376 ( orig = 377 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1717 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1717 model... - numRounds = 8 - Consensus Length = 1213 ( orig = 1191 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2327 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2327 model... - numRounds = 7 - Consensus Length = 3746 ( orig = 3737 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 6416 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-6416 model... - numRounds = 5 - Consensus Length = 276 ( orig = 269 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 26 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-26 model... - numRounds = 11 - Consensus Length = 1948 ( orig = 1930 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 3174 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3174 model... - numRounds = 5 - Consensus Length = 183 ( orig = 185 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 6 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2962 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2962 model... - numRounds = 7 - Consensus Length = 626 ( orig = 626 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2465 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2465 model... - numRounds = 8 - Consensus Length = 743 ( orig = 760 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 4 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1111 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1111 model... - numRounds = 6 - Consensus Length = 181 ( orig = 179 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3859 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3859 model... - numRounds = 4 - Consensus Length = 52 ( orig = 52 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3298 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3298 model... - numRounds = 9 - Consensus Length = 322 ( orig = 306 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 7414 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-7414 model... - numRounds = 7 - Consensus Length = 1424 ( orig = 1401 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 649 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-649 model... - numRounds = 6 - Consensus Length = 515 ( orig = 523 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 5 ( orig = 5 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2507 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2507 model... - numRounds = 7 - Consensus Length = 390 ( orig = 387 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1455 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1455 model... - numRounds = 5 - Consensus Length = 80 ( orig = 82 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 953 - Saving elements to a file... - 19 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-953 model... - numRounds = 5 - Consensus Length = 1394 ( orig = 1397 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 4 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3501 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3501 model... - numRounds = 4 - Consensus Length = 465 ( orig = 465 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 618 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-618 model... - numRounds = 5 - Consensus Length = 349 ( orig = 350 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 5238 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5238 model... - numRounds = 7 - Consensus Length = 1838 ( orig = 1835 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 537 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-537 model... - numRounds = 5 - Consensus Length = 360 ( orig = 353 ) - Avg Kimura Divergence = 0.02 - Unaligned sequences = 2 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1032 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1032 model... - numRounds = 7 - Consensus Length = 490 ( orig = 503 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1343 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1343 model... - numRounds = 6 - Consensus Length = 700 ( orig = 699 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 731 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-731 model... - numRounds = 5 - Consensus Length = 561 ( orig = 559 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1297 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1297 model... - numRounds = 7 - Consensus Length = 750 ( orig = 792 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 9 ( orig = 9 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 42 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-42 model... - numRounds = 6 - Consensus Length = 501 ( orig = 507 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 952 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-952 model... - numRounds = 7 - Consensus Length = 1690 ( orig = 1646 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time Processing RECON family: 155 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:01 (hh:mm:ss) Elapsed Time Refining family-155 model... - numRounds = 5 - Consensus Length = 133 ( orig = 133 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time Processing RECON family: 4586 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4586 model... - numRounds = 6 - Consensus Length = 338 ( orig = 344 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2586 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2586 model... - numRounds = 5 - Consensus Length = 2034 ( orig = 2035 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2344 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2344 model... - numRounds = 5 - Consensus Length = 248 ( orig = 249 ) - Avg Kimura Divergence = 0.02 - Unaligned sequences = 7 ( orig = 8 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1424 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1424 model... - numRounds = 7 - Consensus Length = 699 ( orig = 685 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 2983 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2983 model... - numRounds = 7 - Consensus Length = 509 ( orig = 497 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3285 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3285 model... - numRounds = 5 - Consensus Length = 169 ( orig = 169 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2323 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2323 model... - numRounds = 7 - Consensus Length = 4453 ( orig = 4463 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:11 (hh:mm:ss) Elapsed Time Processing RECON family: 433 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-433 model... - numRounds = 5 - Consensus Length = 3173 ( orig = 3176 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 3543 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3543 model... - numRounds = 6 - Consensus Length = 397 ( orig = 399 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1202 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1202 model... - numRounds = 6 - Consensus Length = 468 ( orig = 459 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 350 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-350 model... - numRounds = 5 - Consensus Length = 441 ( orig = 435 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 5 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 646 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-646 model... - numRounds = 8 - Consensus Length = 399 ( orig = 400 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2963 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2963 model... - numRounds = 6 - Consensus Length = 542 ( orig = 559 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 980 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-980 model... - numRounds = 5 - Consensus Length = 339 ( orig = 337 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 6964 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-6964 model... - numRounds = 4 - Consensus Length = 41 ( orig = 41 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3439 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3439 model... - numRounds = 7 - Consensus Length = 376 ( orig = 373 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2604 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2604 model... - numRounds = 8 - Consensus Length = 879 ( orig = 882 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 5497 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5497 model... - numRounds = 6 - Consensus Length = 504 ( orig = 506 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 113 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-113 model... - numRounds = 4 - Consensus Length = 1287 ( orig = 1287 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1565 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1565 model... - numRounds = 6 - Consensus Length = 1753 ( orig = 1744 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 7 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 4903 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4903 model... - numRounds = 11 - Consensus Length = 1367 ( orig = 1367 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:5 Elapsed Time Refinement: 00:00:05 (hh:mm:ss) Elapsed Time Processing RECON family: 1198 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1198 model... - numRounds = 3 - Consensus Length = 67 ( orig = 67 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 472 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-472 model... - numRounds = 6 - Consensus Length = 309 ( orig = 308 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1379 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1379 model... - numRounds = 5 - Consensus Length = 649 ( orig = 649 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 951 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-951 model... - numRounds = 5 - Consensus Length = 594 ( orig = 605 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3812 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3812 model... - numRounds = 5 - Consensus Length = 344 ( orig = 333 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 3 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 840 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:01 (hh:mm:ss) Elapsed Time Refining family-840 model... - numRounds = 6 - Consensus Length = 834 ( orig = 825 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 131 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-131 model... - numRounds = 7 - Consensus Length = 1140 ( orig = 1116 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 8 ( orig = 8 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4172 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4172 model... - numRounds = 4 - Consensus Length = 385 ( orig = 385 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 713 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-713 model... - numRounds = 4 - Consensus Length = 110 ( orig = 110 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 904 - Saving elements to a file... - 18 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-904 model... - numRounds = 6 - Consensus Length = 566 ( orig = 575 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 128 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-128 model... - numRounds = 6 - Consensus Length = 939 ( orig = 946 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 8 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1327 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1327 model... - numRounds = 8 - Consensus Length = 737 ( orig = 727 ) - Avg Kimura Divergence = 0.02 - Unaligned sequences = 10 ( orig = 10 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2136 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2136 model... - numRounds = 6 - Consensus Length = 431 ( orig = 413 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1071 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1071 model... - numRounds = 7 - Consensus Length = 1346 ( orig = 1340 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 3065 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3065 model... - numRounds = 6 - Consensus Length = 338 ( orig = 338 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 4 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2124 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2124 model... - numRounds = 3 - Consensus Length = 39 ( orig = 39 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time Processing RECON family: 1248 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1248 model... - numRounds = 6 - Consensus Length = 557 ( orig = 566 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4215 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4215 model... - numRounds = 6 - Consensus Length = 898 ( orig = 891 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3160 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3160 model... - numRounds = 9 - Consensus Length = 1369 ( orig = 1358 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 4425 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4425 model... - numRounds = 6 - Consensus Length = 838 ( orig = 837 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3095 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3095 model... - numRounds = 7 - Consensus Length = 2267 ( orig = 2305 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 1955 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1955 model... - numRounds = 6 - Consensus Length = 327 ( orig = 320 ) - Avg Kimura Divergence = 0.02 - Unaligned sequences = 4 ( orig = 5 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1278 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1278 model... - numRounds = 5 - Consensus Length = 203 ( orig = 208 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1339 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1339 model... - numRounds = 5 - Consensus Length = 1005 ( orig = 1005 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 5189 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5189 model... - numRounds = 4 - Consensus Length = 416 ( orig = 416 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1760 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1760 model... - numRounds = 6 - Consensus Length = 206 ( orig = 209 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2075 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2075 model... - numRounds = 6 - Consensus Length = 136 ( orig = 149 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3059 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3059 model... - numRounds = 4 - Consensus Length = 45 ( orig = 45 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time Processing RECON family: 404 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-404 model... - numRounds = 5 - Consensus Length = 387 ( orig = 391 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1933 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1933 model... - numRounds = 6 - Consensus Length = 743 ( orig = 743 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2090 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2090 model... - numRounds = 7 - Consensus Length = 427 ( orig = 423 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1186 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1186 model... - numRounds = 6 - Consensus Length = 399 ( orig = 395 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 5 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 22 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-22 model... - numRounds = 7 - Consensus Length = 360 ( orig = 362 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3695 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3695 model... - numRounds = 8 - Consensus Length = 690 ( orig = 694 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4027 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4027 model... - numRounds = 5 - Consensus Length = 564 ( orig = 556 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1122 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1122 model... - numRounds = 5 - Consensus Length = 363 ( orig = 371 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2488 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2488 model... - numRounds = 4 - Consensus Length = 364 ( orig = 363 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 5 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5 model... - numRounds = 7 - Consensus Length = 497 ( orig = 509 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 301 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-301 model... - numRounds = 5 - Consensus Length = 601 ( orig = 607 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1134 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1134 model... - numRounds = 5 - Consensus Length = 89 ( orig = 88 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 621 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-621 model... - numRounds = 5 - Consensus Length = 704 ( orig = 704 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4252 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4252 model... - numRounds = 9 - Consensus Length = 503 ( orig = 485 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3500 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3500 model... - numRounds = 4 - Consensus Length = 63 ( orig = 63 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time Processing RECON family: 4664 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4664 model... - numRounds = 8 - Consensus Length = 4912 ( orig = 4932 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:10 Elapsed Time Refinement: 00:00:10 (hh:mm:ss) Elapsed Time Processing RECON family: 820 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-820 model... - numRounds = 7 - Consensus Length = 269 ( orig = 269 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2381 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2381 model... - numRounds = 8 - Consensus Length = 5325 ( orig = 5338 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:8 Elapsed Time Refinement: 00:00:08 (hh:mm:ss) Elapsed Time Processing RECON family: 4741 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4741 model... - numRounds = 6 - Consensus Length = 220 ( orig = 223 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 4 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 4630 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4630 model... - numRounds = 8 - Consensus Length = 231 ( orig = 227 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1194 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1194 model... - numRounds = 5 - Consensus Length = 472 ( orig = 474 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 4 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1450 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1450 model... - numRounds = 8 - Consensus Length = 941 ( orig = 926 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 756 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-756 model... - numRounds = 4 - Consensus Length = 101 ( orig = 101 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 6987 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-6987 model... - numRounds = 9 - Consensus Length = 1694 ( orig = 1687 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 2062 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2062 model... - numRounds = 5 - Consensus Length = 849 ( orig = 845 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 6352 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-6352 model... - numRounds = 6 - Consensus Length = 1027 ( orig = 996 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 74 - Saving elements to a file... - 17 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-74 model... - numRounds = 7 - Consensus Length = 511 ( orig = 512 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1183 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1183 model... - numRounds = 4 - Consensus Length = 401 ( orig = 390 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1894 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1894 model... - numRounds = 7 - Consensus Length = 1029 ( orig = 1059 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 256 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-256 model... - numRounds = 5 - Consensus Length = 287 ( orig = 288 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 153 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-153 model... - numRounds = 6 - Consensus Length = 387 ( orig = 387 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2818 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2818 model... - numRounds = 7 - Consensus Length = 511 ( orig = 534 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 5 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 3889 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3889 model... - numRounds = 11 - Consensus Length = 1012 ( orig = 1020 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 812 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-812 model... - numRounds = 11 - Consensus Length = 711 ( orig = 700 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 661 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-661 model... - numRounds = 4 - Consensus Length = 348 ( orig = 348 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 6367 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-6367 model... - numRounds = 9 - Consensus Length = 334 ( orig = 332 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1975 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1975 model... - numRounds = 6 - Consensus Length = 1174 ( orig = 1158 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 4 ( orig = 4 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1258 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1258 model... - numRounds = 7 - Consensus Length = 635 ( orig = 637 ) - Avg Kimura Divergence = 0.02 - Unaligned sequences = 7 ( orig = 10 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1919 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1919 model... - numRounds = 11 - Consensus Length = 361 ( orig = 380 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 3819 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3819 model... - numRounds = 10 - Consensus Length = 178 ( orig = 178 ) - Avg Kimura Divergence = 0.02 - Unaligned sequences = 4 ( orig = 6 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2411 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2411 model... - numRounds = 8 - Consensus Length = 1144 ( orig = 1147 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 664 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-664 model... - numRounds = 6 - Consensus Length = 570 ( orig = 570 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 913 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-913 model... - numRounds = 5 - Consensus Length = 473 ( orig = 488 ) - Avg Kimura Divergence = 0.02 - Unaligned sequences = 6 ( orig = 7 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2031 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2031 model... - numRounds = 4 - Consensus Length = 96 ( orig = 96 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2134 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2134 model... - numRounds = 8 - Consensus Length = 396 ( orig = 394 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 703 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-703 model... - numRounds = 4 - Consensus Length = 148 ( orig = 148 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1204 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1204 model... - numRounds = 5 - Consensus Length = 456 ( orig = 454 ) - Avg Kimura Divergence = 0.02 - Unaligned sequences = 6 ( orig = 7 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1445 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1445 model... - numRounds = 6 - Consensus Length = 1547 ( orig = 1537 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1812 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1812 model... - numRounds = 8 - Consensus Length = 2493 ( orig = 2464 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:6 Elapsed Time Refinement: 00:00:06 (hh:mm:ss) Elapsed Time Processing RECON family: 3283 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3283 model... - numRounds = 4 - Consensus Length = 1768 ( orig = 1768 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 75 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-75 model... - numRounds = 6 - Consensus Length = 705 ( orig = 700 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 5050 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5050 model... - numRounds = 5 - Consensus Length = 1981 ( orig = 2009 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3452 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3452 model... - numRounds = 7 - Consensus Length = 2108 ( orig = 2135 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 7 ( orig = 8 ) Build Consensus: 0:0:4 Elapsed Time Refinement: 00:00:04 (hh:mm:ss) Elapsed Time Processing RECON family: 3877 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3877 model... - numRounds = 5 - Consensus Length = 1560 ( orig = 1549 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 6991 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-6991 model... - numRounds = 5 - Consensus Length = 485 ( orig = 489 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1882 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1882 model... - numRounds = 7 - Consensus Length = 5534 ( orig = 5528 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:9 Elapsed Time Refinement: 00:00:09 (hh:mm:ss) Elapsed Time Processing RECON family: 2695 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2695 model... - numRounds = 4 - Consensus Length = 758 ( orig = 758 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2452 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2452 model... - numRounds = 4 - Consensus Length = 196 ( orig = 196 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1687 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1687 model... - numRounds = 6 - Consensus Length = 383 ( orig = 388 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 3 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 5894 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5894 model... - numRounds = 4 - Consensus Length = 384 ( orig = 385 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1916 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1916 model... - numRounds = 5 - Consensus Length = 235 ( orig = 234 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 1101 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1101 model... - numRounds = 5 - Consensus Length = 1439 ( orig = 1452 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:3 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 3803 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-3803 model... - numRounds = 8 - Consensus Length = 528 ( orig = 531 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 2 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2505 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2505 model... - numRounds = 3 - Consensus Length = 36 ( orig = 36 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:0 Elapsed Time Refinement: 00:00:00 (hh:mm:ss) Elapsed Time Processing RECON family: 5058 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5058 model... - numRounds = 7 - Consensus Length = 904 ( orig = 943 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 5114 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-5114 model... - numRounds = 5 - Consensus Length = 287 ( orig = 288 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 4176 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4176 model... - numRounds = 11 - Consensus Length = 4787 ( orig = 4812 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 4 ) Build Consensus: 0:0:12 Elapsed Time Refinement: 00:00:12 (hh:mm:ss) Elapsed Time Processing RECON family: 4205 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-4205 model... - numRounds = 7 - Consensus Length = 527 ( orig = 510 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 780 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-780 model... - numRounds = 7 - Consensus Length = 955 ( orig = 958 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:03 (hh:mm:ss) Elapsed Time Processing RECON family: 1875 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1875 model... - numRounds = 4 - Consensus Length = 145 ( orig = 149 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2371 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2371 model... - numRounds = 6 - Consensus Length = 890 ( orig = 906 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 5 ( orig = 7 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2925 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2925 model... - numRounds = 7 - Consensus Length = 440 ( orig = 438 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 1395 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-1395 model... - numRounds = 4 - Consensus Length = 186 ( orig = 185 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 0 ( orig = 1 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 735 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-735 model... - numRounds = 7 - Consensus Length = 738 ( orig = 686 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:2 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 808 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-808 model... - numRounds = 8 - Consensus Length = 488 ( orig = 492 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 707 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-707 model... - numRounds = 5 - Consensus Length = 341 ( orig = 342 ) - Avg Kimura Divergence = 0.00 - Unaligned sequences = 0 ( orig = 0 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:02 (hh:mm:ss) Elapsed Time Processing RECON family: 2168 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2168 model... - numRounds = 5 - Consensus Length = 524 ( orig = 525 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 2 ( orig = 2 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Processing RECON family: 2536 - Saving elements to a file... - 16 elements found. Element Gathering: 00:00:00 (hh:mm:ss) Elapsed Time Refining family-2536 model... - numRounds = 5 - Consensus Length = 426 ( orig = 430 ) - Avg Kimura Divergence = 0.01 - Unaligned sequences = 1 ( orig = 3 ) Build Consensus: 0:0:1 Elapsed Time Refinement: 00:00:01 (hh:mm:ss) Elapsed Time Family Refinement: 00:22:39 (hh:mm:ss) Elapsed Time Round Time: 15:23:11 (hh:mm:ss) Elapsed Time Discovery complete: 2029 families found Classifying Repeats... RepeatClassifier Version open-1.0.11 =============================== Search Engine = ncbi - Looking for Simple and Low Complexity sequences.. - Looking for similarity to known repeat proteins.. - Looking for similarity to known repeat consensi.. Classification Time: 01:31:26 (hh:mm:ss) Elapsed Time Program Time: 32:54:13 (hh:mm:ss) Elapsed Time Working directory: /home/sam/analyses/20190626_Pgenerosa_v074_repeatmodeler/RM_8927.WedJun261133512019 may be deleted unless there were problems with the run. The results have been saved to: /home/sam/analyses/20190626_Pgenerosa_v074_repeatmodeler/Pgenerosa_v074-families.fa - Consensus sequences for each family identified. /home/sam/analyses/20190626_Pgenerosa_v074_repeatmodeler/Pgenerosa_v074-families.stk - Seed alignments for each family identified. This version of RepeatModeler can upload families directly to the open repeat database - Dfam_consensus. Please consider uploading your final curated library using the RepeatModeler "util/dfamConsensusTool.pl" script ( details at http://www.repeatmasker.org/RepeatModeler/dfamConsensusTool ) or posting your raw (uncurated) RepeatModeler results to the TE Raw Dataset Repository ( http://www.repeatmasker.org/Dfam_consensus/#/public/repository ).