lowQualScore : 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111111111
lowQualScore : 1 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22 777777777 1111 3333333333 2222 1 1 1 555 00000000000 111 1 1 1 11 1 1 1 111 111 11 2222 1111111 11111 11111 11111111 11111111111
lowQualScore : 7 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 6 00 888888888 7777 6 5555555555 8888 3 0 0 0 0 000 6 6 33333333333 444 6 2 6 2 5 5 4 8 4 4 4 3 6 77 1 8 8 7 5 6 6 6 6 2 7 5 3 7 6 111 111 77 0000 333 6666666 99999999999 22 44444 555 2 6 4 33 99999 2 2 1 2 6 99999999 55555 2 11111111111 4 5555 333 333
lowQualScore : . ................................................................................................................. . .. ......... .... . .......... .... . . . . . ... . . ........... ... . . . . . . . . . . . . . .. . . . . . . . . . . . . . . . ... ... .. .... ... ....... ........... .. ..... ... . . . .. ..... . . . . . ........ ..... . ........... . .... ... ...
lowQualScore : 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 7 00 333333333 0000 0 0000000000 3333 3 8 5 2 2 222 0 0 77777777777 000 0 5 7 2 0 0 2 8 0 0 2 2 0 88 4 0 0 0 0 0 0 7 0 5 5 0 7 5 0 777 777 55 5555 555 9999999 55555555555 88 11111 777 6 5 0 66 99999 2 2 0 4 6 11111111 00000 0 77777777777 0 9999 777 777
consensus : CAAAGGAACCACTGA---AAT-----TGATATTGTATAT-ATAAA--CTATATTTTAATAAAAACGT-----AAAAATTACTCATCCGCGTCGATTTT-GG------GCTA-----------AATGCTTGATTTGTACGTGCAGCTCGA-GCCTGTGCGTTAGTT----ATAGTGACTGTA----------TAAAGAA----AA-AACATAACAAAACATCACTATAAAAGTGCATAAGACAGCAGCTGAAATCGGAAATGTTTAATATTTCCTTAAAGCATGGCCACCAGTTCATCAGATAGGTAAACATCGGTTTAGAATAATTTTATCTGCTTTTT--ATTCTA---AATATTAATCAAATCCATA---TGTGCAATATTTCAATTATGTTGCAAAATCGCGAAACGCTTTCTGCTCCGATTTACGTGAAGTCATGACGTCACTTTTAGAACCTAGAAAAAATGTCCAATTCGAAAATATTTACGATCAAATTGTTGAGATTAATTANANTTTTAGCCGAAAAATAAAGGACTAAAGTTATTTTCTGAGAGACCAATACGCCAGCGAATACAAAGTGCACTTTAAGTCAAGCATACTGCTTCAACAAGCGAATATTTAAGTAATATTAAGCCTTAATAGGG-TCG-TTTTGAATATTTTCATGGTTGAATAATTACCTCTAGCACACGTCTTACTATGCACTTAAACTACATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTAGTCCGGATCACAACCTAAGACAACACGGTGAATTACGAAAAATAATGAGTGTCGGGTTAGCTCTTTTGGTCAGTATACATACACTAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATCACAACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TG---TTCGTCAAAAATCTGGCATGTTTCGTGGTAG---TTACATATATGCCC-----G-TTTC-----------AGTTACA--TATA----NG--ATTTTAGTTACATATGTGTCCGATTT-GTTACATTTGTGCCCTGTC-G---TTTT-T-TTTCTA-AATAGTTACAAATGTGC-------CCTTTTAGTTACATATGT-----GTCC-TTTN----------AGTTACATATGTG-CT---TT---A---GTTACATATGTGACCC
Reference ( gi|1 ) : CAATGGAAC-ACAGACGCAATCTACATAATTTTTTATAT-ATAG---TTATATATTTATAAAATCTTTTTTTCAAAATCGCTGATCTGCGTCGGTTTTCGGTAAAATGCTACATTTCGGTAAAATGCTTGATTTGTACGTGCAGCTCGA-CCCT-----TTCTTT----ACAGTGACTGTA----------TAAAGAA----AA-AACATAATAAAACATCACTATAAAAGTGCATATGACAGCAGCTGAAATCGGAAATGTTTTTAATTTCCTTAAAGCATGGTCACCAGTTCATCAGATAGGTAAATATCGGTTTAGAATAATTTTATCTGCTTTTTAAATATTAATTAATATTAATCAAATCCATA---TGTACAATATTTCAATTATGTTGCAAAATCGCGAAATGCTTTCTGCTCCAATTTACCTGAAGTCATGCCGTCTCTTTTAGAACCTAGAAAAAATGTCTAATTCGAAAATATTTACGATCAAATTGTTGAGATTAATTATAATTTTAGCCGAAAAATAAAGGGCTAAAGTTATTTTCTGAGAGACCAATACGCCAGCAAATACAAAGTGCACTTTAAGTCAAGCATATTGCTTCAACAAGCGAGTATTTAAGTAATAATAAGCCTTAATAGGG-TCG-TTTTGAATAATTTCATGGTTGAATAATTCCTTCTAGCACACGTCTTACTATGCACTTAAACTACATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTAATCCGGATCACAACCTAAGACAACACGGTGAATTACGAAAAATAATGAGTGTCGGGTTAGTTCTTTTGGTCAGTATACATATACTACATTAACAATATCAGTATTTACAACATATATTGGAGACTATCATAACTACATATTGCAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TG---TTCGTCAAAAAGCTAGCATGTTTCGTGGTAG---TTACATATATGCCC-----G-TTTC-----------AGTTACA--TATA----CG--ATTTTAGTTACATTTGTGTCCGATTT-GTTACATTTGTGCCCTGTC-A---TTTT-T-TTTCTA-AATAGTTATAAATGTGC-------ACTTTTAGTTACATATGT-----GTCC-TTTT----------AGTTACATATGTG-CC---TT---A---GTTACATATGTGACCC
gi|8 : CAAAGGAACCACTGA---AAT-----TGATATTGTATATTATAAAGACTATATTTTAATAAAAACGT-----AAAAATTACTCATCCGCGTCGATTTT-GG------GCTA-----------AATGCTTGATTTGTACGTGCAGCTCGA-GCCTGTGCGTTAGTT----ATAGTAACTGTA----------T
gi|3 : atcacgtgtgttagggtcacatgtgtaactaaaagggcatgtttgtaactatttagaaaaaaaacgacaaagtacaaatgtaacgaaaatcctatatgtaactgaaacaggcatatatgtaactactaccttaccatattttttacgaacaacatgtaacatctctatcgcggtgtttatccagcgaaaattgtgtatggcgtcgttttaagaaaataccagttagcacatgcattttttatatattatgttatctttatcatttaataagaaaggaatactgagttatatacggaggcgccctacttatgactttaaaactcccaattagtagacgcttatccctaattaggacactttaaagtcttaaataaaaaaaaacttagtccttataaggatattttaaagttttaaataaatttgaagtcttcaataaaataactaagtcctaattagtttttctgatagactataatgaattggcaccgtacgctcccgtagttgtgtataatttgcacccagttgaaccacttgaaacactgagtgatttccctttgttttgtatatatcgtttgtacattgtttTAT-AAAGA--CTATATTTTAATAAAAACGT-----AAAAATTACTCATCCGCGTCGATTTT-GG------GCTA-----------AATGCTTGATTTGTACGTGCAGCTCGA-GCCTGTGCGTTAGTT----ATAGTAACTGTA----------TAAAGAA----AA-AGCATAA-AAAACATCACTATAAAAGTGCATAAGACAGCAGCTGAAATCGGAAATGTTCAATATTTCCTTGAAGCATGGCCACCAGTTCATCAGATAGGTAAACATCGGTTTAGAATAATTTTTTCTGCTTTTTA--TTCTAA---ATATTAATCAAATCCATAATATGTGCAATATTTCAATTATGTTGCAAAATTGCAAAACACTTTCTGCTCGAATTTACGTGAAGTCATGACGTACCTTTTAGAACCTAGAACACATGTCCAATTCGAAAATATTAAGGATCAAATTGTTGAGATTAATTATATTTTAAGCCGAAAAATAAAGGATTAAAGTTATTTCCTGAGATACCAATATGCCAGCGAATACAAAGTGCACTTCAAGTCAAGCATATTGCTTCAACAAGCGAATATTTAACTAAT-TTTAGCCTTAATAGGG-TCGTTTTTGGATATTTTCATGGTTTAATAATTACCTCTAGTACACGTCTTACTATGCACTTAAACTACATATATCATACTAATGTTTAAGAAATTTTAGCATGTTGTCCAGATCACAACCTAAGACAACACTGTGAATTACGAAAAATATTGAGTGTCGGGTTAGCTCTTT-------TACACA------AGATTAACAATATCAGTATTTACAACATATATTGGAGACTATCACAACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TGTTCTTCGTCAAAAATCCAGCATGTTTCGTGATAG---TTACATATATGTCC-----G-TTTC-----------AGTACCA--TATA----AG--ATTTTAGTTACATTTGT
gi|18 : aaaggaaccactgaaattgatattgtatat-ATAA---TGATATATATATAA--TCTTTTTTT--AAATCACACATCCGTGTCGGATTT-GG------GCTA-----------AATGCTT-ATTTGTACGTGCAGCTCGAGCCCG-----TGCGTTAGTAATAGTGACTGTA----------T
gi|2 : ttttgtgatgattgtttgacatattaagaatcaaacagtctgacaagTT----ATAGTGACTGTAAGAGAACGTATAAATAACATAAATAAAATAACAAAATATCACTATAAAAGTGCATAAAACAGCAGCTGAAATCGGAAATGTTTAT--TTTCCTTAAAGCATGACCACCAGTTCATCAGATAGGAAAACATCGGTTTAGAGTAATTTTATCTGCTTTTT--ATTCTA---AATATTAATCAAATCCATA---TGTGCAATATTTTAATTATGTT-CGAAATCGGGA
gi|4 : cgtttgttggggtcacatatgtaactaaagtacatatgtaaccaaaaggacacatatattactaaaagggcatatttgtaactatttagaaaaaaaccgacatagcacaaatgtaataaatcggacatatatgtaaccaaaatcctacatgtaacttaaacaggcatgtttgtaatttctaccataccatcatgcacaacatgtaacatctcagtcacggtgtttatccggccaaaattgtgtatggcgtcgttttaagaaaattcaagtgagtacatgcatttttgatatattaggttatctttatcatttagttagaaaggaatacacagttatatacggaagcaccctgcttatgactttaaaactcccattaaatagacgctaagtcctaattaggagatttttaaagtcttaaattaacaaacttcgtcctacttaggatattttaaagtcttaaataaaacactaagtcctattaaggtgaatcggaagtcttcattaaaataagtcctaattagtttttttctgatagaacactatgaattggcaccgtatatgattatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgagcccgtgcgttagTT----ATTGTGACTGTA----------TAAAGAA----AA-AACATAACAAAACATCACTATAAAAATGCATAAGAAAGCAACTGAAATCGGAAATGTTTAATATTTTCTTAAAGCATGACCACCAGTTCATCAGATAGGTAAACATCGGTTTAGAATAATTTTATCTGC
gi|7 : gtctgttggggtcacatatgtaaccaaagcacatttgtaacttaaaggacacatatgttactaaaggggcatatttgtaactattgtaacccgacatagcacaaatgtaataaatcggacacatatgtaaccaaaaccctatatgtaactgaaactgatatatatgtaactactaccataccatatttttgacgaacaacatgtaacatctcaatcacggtgtttatccgacgaaaattgtgtatggcgtcgttttaagaaaattcaagtaagtacatgcatttttgatatattaagttatctttatcatttaataagaaaggaatatacagttatatacggaggcaccctacttatgactttaaaactcccaattagtagtcgctaagtcctaattaggagattttaaagtcttaaataaaacactaagtcctaattaggagcattggaagtcttcaaaaaaaataactaagtcgtaattagtttttctgatagaacattatgaattggcaccgtatatgagtatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgagcccgtgcgttagATAATGAAACATCACTATAAAAGTGCATATGGTAGCATCTGAAATCGGAAATGTTTAATATTTCCTTAAAGCATGGCCACCAGGTCATCAGATAGGTAAACATCGGTTTAGAATATGTTTATCTGCTTTTT-AAT-CTA---AATATTTATCAAATTCATA---
gi|6 : TCATATCCATA---TGTGCAATATTTCATTTATGTTGCAAAATCGCGAAATGCTTTCTGTTCCGATTTACGTGAAGTCATGACGTCAATTTTAGAACCTAGAAAAAATGTCCAATGCGAAAATATTTACGATCAAATTGTTGAGATTAATTAAAATTTTAGCCGAAAAATAAAGGGCTAAAGTTATTTTCTGAGAGACCTATACGCCAGCAAATACAAAGTGCACTTTAAGTCAAGCATACTGCTTCAACAAGCGAATATTTAAGTAATATTAAGCCTTAATAGGG-TCG-TTTTGAATATTTTCATGGTTGAATAATTACCTCTAGCACACGTCTTACTATGCACTTAAACTACATATTTCATACTAATGTTAAAGAAAGTTCAACATGTAGTCCGGATCACAACCTAA--------GGTGAATTACAAAATATAATGAGT-TCGGGTTAGCTCTTTT-GTCAGTATACATACACTAGATTAACAATATCGGTATTAACAACACATATTTGAGACTATCACAACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATACA---TG---TTTGTCAAAATTCTAGCATGTTTCATGGTAG---TTACATAAATGCAC-----A-TTTC-----------AGTTACA--TATA----AG--ATTTAAGTTACA-TTGTGTCCTTTTA-GTTACATATGTGC-----------TT--------------TAGTTACATATGTG--------ACC--------CATATGT-----A----TTTA----------AAGCACATATGTA-AC---TT---AAAGGACACATATGTAACgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgtgttaatatgtttaaaaatataatgaacaaaaaatgtatgtaaatgagaaaccaatacaccagcaagtataaagtgcactttaagtcaagcatactgcttgaacaagcgaatatataagtaatatttagccttaataggggtcgttttgaatattttcatagttgaataattgcctctagcacacgtcttactatgcacttatacaacatatttcatactaatgttaaagaaagttcagcatgtggtccggatcacaacctaagacaacacggtgaattacgaaaaataatgagtgtcgggttaactcttttggtcagtgtacatacactagatactggagagtatcacaactacatattacaatcgcaaagcaaagtgcacacagtaaaatacatgttgtttgtcaaaattctagcatgtttcgtggttgttacatttgtgcctttttaattacatatgtgaccccagcagacgtc
gi|5 : gATA---TGTGCAATATTTCAATTATGTGGCAAAATCGCGAAATG-TTTCTGTTCCGATTTACGTGAAGTCATGACGTCACTTTTAGAACCTAGAAAAAATGTCCAATTCGAACATATTTACAATCAAATTGTTGAGATTAATTAAAATATTAGCCGAAAAATAAAGGACTAAAGTTATTTTCTGAGAGACCAATACGCCAGCAAATACTAAGTGCACTTTAAGTCAAGCATACTGCTTCAACAAGCGAATATTTAAGTAATATTAAGCCTTAATAAGG-TCG-TTTTGTATATTTTTATGGTTGAATAATTACCTCTAGCACACGTCTTACGATGCACTTTAACTATATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTAGTCCGGATCACAACCTAATACAATATATTGAATTACGAAAAATAATAAGTGTCGGGTTAGCTCTTTTGGTCACTATACATACACTAGATTAACAATATCAGTATTAACAACATATATTGCAGACTATCACAACTACATATTACAATCGCAAAGTAACGTGCACACAGTAAAATGT----TA---TTTGTCAAAATGCTAGCATGTTTCGTGGTAG---TTACATATATGCCC-----A-TTTC-----------AGTTACA--TATA----AG--ATTATAGTTACAATTGTGTCCGATTT-GATACATTTGTGCGCTGTC-GT--TTTT-T-TTTCTA-AATAGTTAAAAATGTGC-------CCTTTTAGTTACATATGT-----GTCC-TTTA----------AGTTACATATGTG-CT---TT---A---GTTACATATGTGACCCtaaaagggcacatttgtaactatttagaaaaaaacccaacagggcaccaatgtaacaaatcgggcacaaatgtaactcaaatc
gi|9 : atatttcagattgtgacacttctggggcattcttctaggatgctttacatatgatggtatttgtattgtaacctacgtatgttgTCTGCTCCGATTTACGTGAAGTCATGACGTCACTTTTAGAATGTAGAAAAAATGTCAAATTCGAAAATATTTACAATCAAATTGTTGAAATTGATTATATTTTTAGCCGAAAAATAAAGGTCT---GTTATTTTCTAATAGACCAATACGCCAGCGATTACAAAGTGCACTTTAAGTCAAGCATATTGCCTCAACAAGCGAATATTTAAGTAATATTAAGCCATAATAGGG-TCG-TTGTGAATATTTTCATGGTTGAATAATTACCTTTAGTACACGTCTTACTATGCACTTAAACTAAATATTTCATACTAATATTAAAGAAAGTTCAGCATGTAGTCCGGATCACA-------ACAACACGGTGAATTACGAAAAA-AATGAGTGTCGGGTTAACTTTTTTGGTCAGTATACATACACTAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATCACAGCTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCATGTTG---TTCGTCAAAAATCTAGCATGTTTCGTGGTAG---TTACATATATGCCC-----G-TTTC-----------AGTTACA--TATA----AG--ATTTTAGTTACATTTGTGTCCAATTT-GTTACATTTGTGCCCTGTC-G---TTTT-T-TTTCTA-AATAGTTACAAATGTGC-------CCTTTTAGTTACATATGT-----GTCT-TTTA----------AGTTACGTATGTG-CT---TT---A---GTTACATATGTGACCCt
gi|7 : aTGAGAAACCAATACACCAGCAAGTATAAAGTGCACTTTAAGTCAAGCATACTGCTTGAACAAGCGAATATATAAGTAATATTTAGCCTTAATAGGGGTCG-TTTTGAATATTTTCATAGTTGAATAATTGCCTCTAGCACACGTCTTACTATGCACTTATACAACATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTGGTCCGGATCACAACCTAAGACAACACGGTGAATTACGAAAAATAATGAGTGTCGGGTTAACTCTTTTGGTCAGTGTACATACACTAGAT--------------------------ACTGGAGAGTATCACAACTACATATTACAATCGCAAAGCAAAGTGCACACAGTAAAATACATGTTG---TTTGTCAAAATTCTAGCATGTTTCGTGGTTG---TTACATTTGTGCCT-------TTTT-----------AATTACA--TATG----TG--Acaa
gi|13 : ataatgaaacatcactataaaagtgcatatggtagcatctgaaatcggaaatgtttaatatttccttaaagcatggccaccaggtcatcagataggtaaacatcggtttagaatatgtttatctgctttttaatctaaatatttatcaaattcatagttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgtgttaatatgtttaaaaatataatgaacaaaaaatgtatgtaaaACTACATATTTCATACTAATGTTAAATGAACTTCAGCATGTAGTCCGGATCACAACCTTAGACAACACGGTGAATTATAAAAAATAATGAGTGTA-----AGCTCTTTTGGTCAGTATACGTACACTAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATC---ACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TGTTATTCGTCAAAAATCTATCATGTTTCGTGGTAG---TTACATAAATGCCC-----G-TTTC-----------AGTTACA--TATA----AG--A------------TTGTGTCCGATTT-GTTACATTTGTGCCCTGTC-G---TTTT-C-TTTCTA-AATAGTTACAAATGTAC-------CCATTTAGTTACATATGT-----GTCC-TTTA----------AGTTTCATATGTG-CT---TT---A---GTTACATATTTGACCCccccagcagacgtc
gi|11 : TACA---TG---TTCGTCAAAAATATGGTATG----GTAGTAG---TTACATATATGCCC-----G-TTTC-----------AGTTACA--TATA----AG--ATTTT-GTTACATATGTGTCCGATTT-GTTACATTTATGCAATGTCTG---TTTT-TATTTCTA-AATAGTTACAAATATGT-------CTTTTTAGTTACATATGT-----TTCC-TTTT----------AGTCACATATGTG-CT---TT---A---GTTACATATGTGACCCcaacacacgttatatgtttagttgaaacacaatacaatataatatattta
gi|16 : gcttcattttaagctttaaattttgtagttgtaaaactcacggataattcattattgttctatattaattagttttcaatatccgcgtgtgtgtgcgtgtgttg---TG---TTCGTCAAAAATATGATATG----GTAGTAG---TTACATATATGCCC-----G-TTCC-----------AGTTATA--TATA----GG--ATTTCGGTTACATAGGTGTCCGATTT-GTTACTTTTGTGCCATGTC-G---TTTT-T-TTT--A-AATAGTTACAAATATGC-------CCTTTTTGTTACATATGT-----GTCC-ATTT----------AGTTACATATGTG-CT---TT---A---GTTACATATGTGACCCacatctcaatgacggtgtttatccggcgaaaactaaagtaagtacatacattttttatatattaggttatctttatcatttaataagaaaggaatacacatttatatacggaggcgccctactcatgactttaaaactcccaattagtagacgctaagtcctagttaggagattttaaagtcttaaataaaaaaaactttgtcctaattaggatattttaaagtcttaaataaaacactaagtcctaataagcagacttggaagtcttcaataaaaataactaagccta
gi|4 : tttattaattactgttagttttccattttataagttcacactttaatatacaagggacgtctgttg---TG---TTCGTCAAAAATATGGTATG----GTAGTAG---TTACATATATATCA-----G-TTTC-----------AGTTACA--TATA----GG--GTTTTGGTTACATATGTGTCCGATTT-ATTACATTTGTGCTATGTC-G---GGT--------TACAATAGTTACAAATATGC-------CCCTTTAGTAACATATGT-----GTCC-TTTA----------AGTTACAAATGTG-CT---TT---G---GTTACATATGTGACCCggtaacatctcaatcacggtgttt
gi|15 : gtctgttg---TG---TTCGTCAAATA--TGGTATG----ACAGTTG---TTACATATATGCCT-----G-TTTC-----------AGTTACA--TATA----GG--ATATTGGTTACATATGTGTCCGAT------------GTGCTATGTC-GGGGTTTT-T-TTCCTA-AAAAGTTACAAATATGG-------CCTTTTAGTCACATATGT-----GTCC-TTTT----------AGTTACTTATGTG-CT---TT---A---GTTACATATGTGACCCacatgtaacatctcaatcacggtgtttatccgacgaaaattgtgtatggcgtcgttttaagaaaattcaagtaagtacatgcatttttgatatattaagttatctttatcatttaataagaaaggaatatacagttatatacggaggcaccctacttatgactttaaaactcccaattagtagtcgctaagtcctaattaggagattttaaagtcttaaataaaacactaagtcctaattaggagcattggaagtcttcaaaaaaaataactaagtcgtaattagtttttctgatagaacattatgaattggcaccgtatatgagtatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgagcccgtgcgttagttattgtgactgtataaagaaaaaacataacaaaacatcactataaaaatgcataagaaagcaactgaaatcggaaatgtttaatattttcttaaagcatgaccaccagttcatcagataggtaaacatcggtttagaataattttatctgc
gi|10 : tgttg---TG---TTCTTCAAAAATATGGTATG----GTAGTAA---TTAGATATATGCCT-----A-TTTC-----------AGCTACA--TATA----GG--ATTTTGGTTACATATGTGTCAGATTT-ATTACATTTGT-------------CTTT-T-TTTCTA-AATAGTTACAAATATGC-------CCTTTTAGTAACATGTGT-----GTCT-TTTT----------AGTTACATATGTG-CT---TT---A---GTTacatgtatcacgttgtttatcgggcgaaaattgtgtatgccgttgttttaagaaaaaatcatgtaagtacaagtatttttgatatattaggttatctatatcatttaataggaaatgaatacacagtta
gi|8 : ---TG---TTCGTAAAAAATATGGTAAG----GTAGTAG---TTACATATATGCCT-----G-TTTC-----------AGTTACA--TATA----GG--ATTTT--------------------C-GTTACATTTGTACTTTGTC-G---TTTT-T-TTTCTA-AATAGTTACAAACATGC-------CCTTTTAGTTACACATGT-----GACC-CTccatgtaacatctcaatcacgttgtttatccgacgaatattgtgaatggcgtcattttaagaaaattcaagtaagtacatgcattttttttatatattaggttatctttatcatttaataagaaaggaatacacagttatatacagaggcgccctacttatgactttaaaattctcaattagcagacgcttagtcttaataaggagattttaaagtcttaaataaaaaaaaacttagtcctaataaggatattttaaagtctttaataaaactcgaagtcctaataaggagaattggaagtcttcaataaaataagtcctacttagtttttctgataaaacattttgatttggcaccgtatatgattatatgtttactatatatgtataatgaccaaaacagcttataatgaaattgtgtatacgactgtgacagacgatattgtatattataaagactctatattcaataaacacggaaaaatcactcatccacgttatgggc
gi|19 : atcacgtgtgttGTATGTCTCCTTTTAG---TTACATATGTGC----------TTT-----------AGTTACA--TATG----TG--Aacatgtaacatctctatcgcggtgtttatccagcgaaaattgtgtatggcgtcgttttaagaaaataccagttagcacatgcattttttatatattatgttatctttatcatttaataagaaaggaatactgagttatatacggaggcgccctacttatgactttaaaactcccaattagtagacgcttatccctaattaggacactttaaagtcttaaataaaaaaaaacttagtccttataaggatattttaaagttttaaataaatttgaagtcttcaataaaataactaagtcctaattagtttttctgatagactataatgaattggcaccgtacgctcccgtagttgtgtataatttgcacccagttgaaccacttgaaacactgagtgatttccctttgttttgtatatatcgtttgtacattgtttcaaaggaaccactgaaattgatattgtatattataaagactatattttaataaaaacgtaaaaattactcatccgcgtcgattttgggctaaatgcttgatttgtacgtgcagctcgagcctgtgcgttagttatagtaactgtat
gi|2 : gtttgtttgggTGGTAGAAATTACAAACATGCCT-----G-TTTA-----------AGTTACA--TGTA----GG--ATTTTGGTTACATATATGTCCGATTT-ATTACATTTGTGCTATGTC-G---GTTT-T-TTTCTA-AATAGTTACAAATATGC-------CCTTTTAGTAATATATGT-----GTCC-TTTT----------GGTTACATATGTA-CT---TT---A---GTTACATATGTGACCCgttactaaaagcttaaagggaatatttgtaactatttagaaaaaaaaccaacatagcaacaatgtaacaa
gi|20 : cgtttgttgTAG---TTACAAATGTGCCC-------TTTT-----------AGTTACA--TATG----TGCCCTTTTAGTTACATATGTGACCtaccatcatgcacaacatgtaacatctcagtcacggtgtttatccggccaaaattgtgtatggcgtcgttttaagaaaattcaagtgagtacatgcatttttgatatattaggttatctttatcatttagttagaaaggaatacacagttatatacggaagcaccctgcttatgactttaaaactcccattaaatagacgctaagtcctaattaggagatttttaaagtcttaaattaacaaacttcgtcctacttaggatattttaaagtcttaaataaaacactaagtcctattaaggtgaatcggaagtcttcattaaaataagtcctaattagtttttttctgatagaacactatgaattggcaccgtatatgattatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgagcccgtgcgttagttatagtgactgtaagagaacgtataaataacataaataaaataacaaaatatcactataaaagtgcataaaacagcagctgaaatcggaaatgtttattttccttaaagcatgaccaccagttcatcagataggaaaacatcggtttagagtaattttatctgctttttattctaaatattaatcaaatccatatgtgcaatattttaattatgttcgaaatcggga
gi|19 : ttacatttgtgtccgatttgttacatttgtgccctgtcgtttttttttctaaaTAG---TAACGTATGTCTCC-------TTTT-----------AGTTACA--TATG----TG---CTTTAGTTACATATGTGACCcca
gi|19 : gtttgtttgTAG---TTACAAATATTCCCTTTAAGCTTTT-----------AGTAACG--TATGTCTCC----TTTTAGTTACATATGTGC----TTTAGTTACATATGTGACCaaagcttaaagggaatatttgtaactatttagaaaaaaaaccaacatagcaacaatgtaacaa
gi|12 : gtttgtttgTAG---TTACAAATATGCCC-------TTTT-----------AGTTACA--TATG----TGTCCTTTAAGTTACATATTTGC----TTTAGTTACATTTGTGACCTtttagaaaaaaaaccaacatagcaacaatgtaacaa
gi|6 : gcaagtcgacaaacgttccgcataaaggtcccttaatagatcgtgatcaaaatcatcgtaataaaaaagcaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttttatcatcatcatggttattgtcatttgctgagacgttcttaacatcccttgatttttttattctacatgtacataaaagtcgttctagatccaatactacgtctttcctccagccagcatcattctaatttaatcatatttctattctctatgaaatttcaccagtattatgtaaaaatcagttttcgttaatgtgtaaatctgttAG---TTACATTTGTGCCC-----GATTT-------------GTTACA--TTGG----TG--CCCT--GTTGGGTTTTTTTCTAAATA-GTTACAAATGTGCCCT--------TT--------------TAGTTACATATGTGT-------CCTTTAAGTTACATATGT-----G----CTTT----------AAATACATATG-------------G---GTCACATATGTAACtaaaaaaaaattgttacat
gi|20 : gtcatatccatatgtgcaatatttcatttatgttgcaaaatcgcgaaatgctttctgttccgatttacgtgaagtcatgacgtcaattttagaacctagaaaaaatgtccaatgcgaaaatatttacgatcaaattgttgagattaattaaaattttagccgaaaaataaagggctaaagttattttctgagagacctatacgccagcaaatacaaagtgcactttaagtcaagcatactgcttcaacaagcgaatatttaagtaatattaagccttaatagggtcgttttgaatattttcatggttgaataattacctctagcacacgtcttactatgcacttaaactacatatttcatactaatgttaaagaaagttcaacatgtagtccggatcacaacctaaggtgaattacaaaatataatgagttcgggttagctcttttgtcagtatacatacactagattaacaatatcggtattaacaacacatatttgagactatcacaactacatattacaatcgcaaagtatagtgcacacagtaaaatacatgtttgtcaaaattctagcatgtttcatggtagttacataaatgcacatttcagttacatataagatttaagttacattgtgtccttttagttacatatgtgctttaG---TTACATTTGTGCCCTGTC-G-TTTTTTTTTCTAAATAGTTACAAATGTG----CC--CTTTTAGTTACATATGTGCCCTTTTA-GTTACATATGTGACCcaaatc
gi|6 : ttacatttgtgtccgatttAGTTACATTTGTGCCCGATTT-GTTACATTGGTGCCCTGTTGG---GTTT-T-TTTCTA-AATAGTTACAAATGTGC-------CCTTTTAGTTACATATGT-----GTCC-TTTA----------AGTTACATATGTG-CT---TT---A---AATACATATGcca
gi|20 : gtcatatccatatgtgcaatatttcatttatgttgcaaaatcgcgaaatgctttctgttccgatttacgtgaagtcatgacgtcaattttagaacctagaaaaaatgtccaatgcgaaaatatttacgatcaaattgttgagattaattaaaattttagccgaaaaataaagggctaaagttattttctgagagacctatacgccagcaaatacaaagtgcactttaagtcaagcatactgcttcaacaagcgaatatttaagtaatattaagccttaatagggtcgttttgaatattttcatggttgaataattacctctagcacacgtcttactatgcacttaaactacatatttcatactaatgttaaagaaagttcaacatgtagtccggatcacaacctaaggtgaattacaaaatataatgagttcgggttagctcttttgtcagtatacatacactagattaacaatatcggtattaacaacacatatttgagactatcacaactacatattacaatcgcaaagtatagtgcacacagtaaaatacatgtttgtcaaaattctagcatgtttcatggtagttacataaatgcacatttcagttacatataagatttaagttacattgtgtccttttagttacatatgtgctttagttacatatgtgaccTTACATTTGTGTCCGATTT-GTTACATTTGTGCCCTGTC-G---TTTTTT-TTTCTA-AATAGTTACAAATGTGC-------CCTTTTAGTTACATATGT-----GCCC-TTTT----------AGTTACATATGTG-caaatc
gi|21 : GTGTCCGATTT-GTTACATTTGTGCCCTATC-G---TTTT-T-TTacccca
gi|19 : ggcaactttccagtaatctgtTT-GTTACATTGTTGCTATGTT-GG--TTTT-T-TTTCTA-AATAGTTACAAATATTCCCTTTAAGCTTTTAGTAACGTATGT-----CTCC-TTTT----------AGTTACATATGTG-CT---TT---A---GTTACATATGTGACCC
gi|8 : gtttgttt-GTTACATATATGCC-TGT--------------TTC------AGTTACATATAGG--------A-TTTTCGTTACATTTGTACTTTGTCG-TTTTTTTTCTAAATAGTTACAAACATG-CCCTTTT---A---GTTACACATGTGACCC
gi|12 : atcacgtgtgtta-A---TTTT-T-TTTT----ATAGTTACAAATATGC-------CCTTTTAGTTACATATGT-----GTCC-TTTA----------AGTTACATATTTG-CT---TT---A---GTTACATTTGTGACCtactaccttaccatattttttacgaacaacatgtaacatctctatcgcggtgtttatccagcgaaaattgtgtatggcgtcgttttaagaaaataccagttagcacatgcattttttatatattatgttatctttatcatttaataagaaaggaatactgagttatatacggaggcgccctacttatgactttaaaactcccaattagtagacgcttatccctaattaggacactttaaagtcttaaataaaaaaaaacttagtccttataaggatattttaaagttttaaataaatttgaagtcttcaataaaataactaagtcctaattagtttttctgatagactataatgaattggcaccgtacgctcccgtagttgtgtataatttgcacccagttgaaccacttgaaacactgagtgatttccctttgttttgtatatatcgtttgtacattgtttcaaaggaaccactgaaattgatattgtatattataaagactatattttaataaaaacgtaaaaattactcatccgcgtcgattttgggctaaatgcttgatttgtacgtgcagctcgagcctgtgcgttagttatagtaactgtat
gi|7 : gcaagtcgacaaacgttccgcataaaggtcccttaatagatcgtgatcaaaatcatcgtaataaaaaagcaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttttatcatcatcatggttattgtcatttgctgagacgttcttaacatcccttgatttttttattctacatgtacataaaagtcgttctagatccaatactacgtctttcctccagccagcatcattctaatttaatcatatttctattctctatgaaatttcaccagtattatgtaaaaatcagttttcgttaatgtgtaaatctgttaGTTACATTTGTGC-------CTTTTTAATTACATATGT-----GACC-tgttacat
gi|3 : ataatgaaacatcactataaaagtgcatatggtagcatctgaaatcggaaatgtttaatatttccttaaagcatggccaccaggtcatcagataggtaaacatcggtttagaatatgtttatctgctttttaatctaaatatttatcaaattcatagttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgtgttaatatgtttaaaaatataatgaacaaaaaatgtatgtaaatgagaaaccaatacaccagcaagtataaagtgcactttaagtcaagcatactgcttgaacaagcgaatatataagtaatatttagccttaataggggtcgttttgaatattttcatagttgaataattgcctctagcacacgtcttactatgcacttatacaacatatttcatactaatgttaaagaaagttcagcatgtggtccggatcacaacctaagacaacacggtgaattacgaaaaataatgagtgtcgggttaactcttttggtcagtgtacatacactagatactggagagtatcacaactacatattacaatcgcaaagcaaagtgcacacagtaaaatacatgttgtttgtcaaaattctagcatgtttcgtggttTAGTTACATATAT-----GTCCGTTTC----------AGTACCATATAAGATT---TT---A---GTTACATTTGTccagcagacgtc
gi|7 : aaaggaaccactgaaattgatattgtatattataaagactatattttaataaaaacgtaaaaattactcatccgcgtcgattttgggctaaatgcttgatttgtacgtgcagctcgagcctgtgcgttagttatagtaactgtataaagaaaaagcataaaaaacatcactataaaagtgcataagacagcagctgaaatcggaaatgttcaatatttccttgaagcatggccaccagttcatcagataggtaaacatcggtttagaataattttttctgctttttattctaaatattaatcaaatccataatatgtgcaatatttcaattatgttgcaaaattgcaaaacactttctgctcgaatttacgtgaagtcatgacgtaccttttagaacctagaacacatgtccaattcgaaaatattaaggatcaaattgttgagattaattatattttaagccgaaaaataaaggattaaagttatttcctgagataccaatatgccagcgaatacaaagtgcacttcaagtcaagcatattgcttcaacaagcgaatatttaactaattttagccttaatagggtcgtttttggatattttcatggtttaataattacctctagtacacgtcttactatgcacttaaactacatatatcatactaatgtttaagaaattttagcatgttgtccagatcacaacctaagacaacactgtgaattacgaaaaatattgagtgtcgggttagctcttttacacaagattaacaatatcagtatttacaacatatattggagactatcacaactacatattacaatcgcaaagtatagtgcacacagtaaaatgcatgttcttcgtcaaaaatccagcatgtttcgtgaGTTACATTTGT-----GCCT-TTTT----------AATTACATATGTGACC---CC---A---
gi|7 : ataatgaaacatcactataaaagtgcatatggtagcatctgaaatcggaaatgtttaatatttccttaaagcatggccaccaggtcatcagataggtaaacatcggtttagaatatgtttatctgctttttaatctaaatatttatcaaattcatagttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgtgttaatatgtttaaaaatataatgaacaaaaaatgtatgtaaatgagaaaccaatacaccagcaagtataaagtgcactttaagtcaagcatactgcttgaacaagcgaatatataagtaatatttagccttaataggggtcgttttgaatattttcatagttgaataattgcctctagcacacgtcttactatgcacttatacaacatatttcatactaatgttaaagaaagttcagcatgtggtccggatcacaacctaagacaacacggtgaattacgaaaaataatgagtgtcgggttaactcttttggtcagtgtacatacactagatactggagagtatcacaactacatattacaatcgcaaagcaaagtgcacacagtaaaatacatgttgtttgtcaaaattctagcatgtttcgtggttGTTACATTTGTG-CC---TTTTTA---ATTACATATGTGACCCcagacgtc
gi|2 : ataatgaaacatcactataaaagtgcatatggtagcatctgaaatcggaaatgtttaatatttccttaaagcatggccaccaggtcatcagataggtaaacatcggtttagaatatgtttatctgctttttaatctaaatatttatcaaattcatagttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgtgttaatatgtttaaaaatataatgaacaaaaaatgtatgtaaatgagaaaccaatacaccagcaagtataaagtgcactttaagtcaagcatactgcttgaacaagcgaatatataagtaatatttagccttaataggggtcgttttgaatattttcatagttgaataattgcctctagcacacgtcttactatgcacttatacaacatatttcatactaatgttaaagaaagttcagcatgtggtccggatcacaacctaagacaacacggtgaattacgaaaaataatgagtgtcgggttaactcttttggtcagtgtacatacactagatactggagagtatcacaactacatattacaatcgcaaagcaaagtgcacacagtaaaatacatgttgtttgtcaaaattctagcatgtttcgtggttGTCACATATGTA-AC---TA---A---AGTACATATGTAACCcagcagacgtc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): GCCAGTCGACAAATGTTCTGAATAAATGTTCCTTACTAGATTGTGATCAACATCATCGTAATAAAAAAGCAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTCATCATCACCATGGTTATCGTCATTTGCTTCTAAAGACGTTCTTAACATCCCATGTTTTGTTTTTTATTCTGAATTCTACATAAAAGTCGCTCTATATCCAATACTACATCTTTCCTGCAACTGACAACATTTTAATTTACTCATATTTCTATTCTCTATG
Unaligned ( gi|17 ): AGGCGCTGTACTTATGACTTTAAAACTCACAATTAGTAGACGCTAAGTCAAAATTAGGAGCTTTTGAAGTCTTAAATAAAAAACTTAGTCCTAATAAGGGTATATCTAAGCCTTAAATAAAATACTAAGTCCTTATTAGAAGAGTTGGATGTCTTTAATAAAATCACTAAGTCCTAATTAGTTTTTATGATAGAACATTATGAAT
Alignments
lowQualScore : 222 22222 2 44444 2222222 222222 44444444444 2222222222 2222 1 11 111 111 111 111 1111 1111111111 111111
lowQualScore : 6 333 55555 0 4 55555 0 0 0 11 1111111 0 1 8 333333 77777777777 2 9999999999 1111 0 6 1 6 0 33 777 111 2 2 1 1 1 2 0 0 6 6 4 0 1 000 000 1 9999 444 2 999999999 1 2222222222 000000 2 55 666 4 2 2 2 2 7777777 2 1 5555 444
lowQualScore : . ... ..... . . ..... . . . .. ....... . . . ...... ........... . .......... .... . . . . . .. ... ... . . . . . . . . . . . . . ... ... . .... ... . ......... . .......... ...... . .. ... . . . . . ....... . . .... ...
lowQualScore : 7 333 00000 8 0 00000 8 8 8 66 2222222 8 8 0 000000 55555555555 5 2222222222 2222 0 4 4 0 8 88 555 777 0 5 0 0 0 2 8 7 7 7 3 7 9 888 888 5 3333 444 5 444444444 0 9999999999 666666 2 77 111 4 1 1 1 2 2222222 2 8 3333 444
consensus : CAAAGGAACCACTGA---AAT-----TGATATTGTATATTATAAAGA--CTATATTTTAATAAAAACGT-----AAAAATCACTCATCCGCGTCGGTTTT-GG------GCTA-----------AATGCTTGATTTGTACGTGCAGCTCGAGCCCGTGCGTTAGTTATAGTGACTGTA----------TAAAGAA----AA-AACATAACAAAACATCACTATAAAAGTGCATAAGACAGCAGCTGAAATCGGAAATGTTTAATATTTCCTTAAAGCATGGCCACCAGTTCATCAGATAGGTAAACATCGGTTTAGAATAATTTTATCTGCTTTTTA--TTCTAA---ATATTAATCAAATCCATA---TGTGCAATATTTCAATTATGTTGCAAAATCGCGAAACGCTTTCTGCTCCGATTTACGTGAAGTCATGACGTCACTTTTAGAACCTAGAAAAAATGTCCAATTCGAAAATATTTACGATCAAATTGTTGAGATTAATTATAATTTTAGCCGAAAAATAAAGGGCTAAAGTTATTTTCTGAGAGACCAATACGCCAGCGAATACAAAGTGCACTTTAAGTCAAGCATACTGCTTCAACAAGCGAATATTTAAGTAATATTAAGCCTTAATAGGG-TCG-TTTTGAATATTTTCATGGTTGAATAATTACCTCTAGCACACGTCTTACTATGCACTTAAACTACATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTAGTCCGGATCACAACCTAAGACAACACGGTGAATTACGAAAAATAATGAGTGTCGGGTTAGCTCTTTTGGTCAGTATACATACACTAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATCACAACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TG---TTCGTCAAAAATCTGGCATGTTTCGTGGTAG---TTACATATATGCCCG-TTTCAGTTACAT---------ATAGGATTTT---------GGTTACATA-----TGTGTCCGATTTGTTACAT-TTGTGCCCTGTC---G-T-TTT-T-TTTCTA-AATAGTTACAAATGTGCCCTTT-------T-AGTTACATATGTGTCCTTTNAGTTACATATGTGC----TTTA---GTTACATATGTGACCC
Reference ( family-968 ) : CAAAGGAACCACTGA---AAT-----TGATATTGTATAT-ATAAA----CTATATTTTAATAAAAACGT-----AAAAATTACTCATCCGCGTCGATTTT-GG------GCTA-----------AATGCTTGATTTGTACGTGCAGCTCGAGCCTGTGCGTTAGTTATAGTGACTGTA----------TAAAGAA----AA-AACATAACAAAACATCACTATAAAAGTGCATAAGACAGCAGCTGAAATCGGAAATGTTTAATATTTCCTTAAAGCATGGCCACCAGTTCATCAGATAGGTAAACATCGGTTTAGAATAATTTTATCTGCTTTTTA--TTCTAA---ATATTAATCAAATCCATA---TGTGCAATATTTCAATTATGTTGCAAAATCGCGAAACGCTTTCTGCTCCGATTTACGTGAAGTCATGACGTCACTTTTAGAACCTAGAAAAAATGTCCAATTCGAAAATATTTACGATCAAATTGTTGAGATTAATTANANTTTTAGCCGAAAAATAAAGGACTAAAGTTATTTTCTGAGAGACCAATACGCCAGCGAATACAAAGTGCACTTTAAGTCAAGCATACTGCTTCAACAAGCGAATATTTAAGTAATATTAAGCCTTAATAGGG-TCG-TTTTGAATATTTTCATGGTTGAATAATTACCTCTAGCACACGTCTTACTATGCACTTAAACTACATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTAGTCCGGATCACAACCTAAGACAACACGGTGAATTACGAAAAATAATGAGTGTCGGGTTAGCTCTTTTGGTCAGTATACATACACTAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATCACAACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TG---TTCGTCAAAAATCTGGCATGTTTCGTGGTAG---TTACATATATGCCCG-TTTCAGTTACAT---------ATANGATTTT---------AGTTACATA-----TGTGTCCGATTTGTTACAT-TTGTGCCCTGTC---G-T-TTT-T-TTTCTA-AATAGTTACAAATGTGCCCTTT-------T-AGTTACATATGTGTCCTTTNAGTTACATATGTGC----TTTA---GTTACATATGTGACCC
gi|1 : CAATGGAAC-ACAGACGCAATCTACATAATTTTTTATAT-ATAG-----TTATATATTTATAAAATCTTTTTTTCAAAATCGCTGATCTGCGTCGGTTTTCGGTAAAATGCTACATTTCGGTAAAATGCTTGATTTGTACGTGCAGCTCGACCCT-----TTCTTTACAGTGACTGTA----------TAAAGAA----AA-AACATAATAAAACATCACTATAAAAGTGCATATGACAGCAGCTGAAATCGGAAATGTTTTTAATTTCCTTAAAGCATGGTCACCAGTTCATCAGATAGGTAAATATCGGTTTAGAATAATTTTATCTGCTTTTTAAATATTAATTAATATTAATCAAATCCATA---TGTACAATATTTCAATTATGTTGCAAAATCGCGAAATGCTTTCTGCTCCAATTTACCTGAAGTCATGCCGTCTCTTTTAGAACCTAGAAAAAATGTCTAATTCGAAAATATTTACGATCAAATTGTTGAGATTAATTATAATTTTAGCCGAAAAATAAAGGGCTAAAGTTATTTTCTGAGAGACCAATACGCCAGCAAATACAAAGTGCACTTTAAGTCAAGCATATTGCTTCAACAAGCGAGTATTTAAGTAATAATAAGCCTTAATAGGG-TCG-TTTTGAATAATTTCATGGTTGAATAATTCCTTCTAGCACACGTCTTACTATGCACTTAAACTACATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTAATCCGGATCACAACCTAAGACAACACGGTGAATTACGAAAAATAATGAGTGTCGGGTTAGTTCTTTTGGTCAGTATACATATACTACATTAACAATATCAGTATTTACAACATATATTGGAGACTATCATAACTACATATTGCAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TG---TTCGTCAAAAAGCTAGCATGTTTCGTGGTAG---TTACATATATGCCCG-TTTCAGTTACAT---------ATACGATTTT---------AGTTACATT-----TGTGTCCGATTTGTTACAT-TTGTGCCCTGTC---A-T-TTT-T-TTTCTA-AATAGTTATAAATGTGCACTTT-------T-AGTTACATATGTGTCCTTTTAGTTACATATGTGC----CTTA---GTTACATATGTGACCC
gi|10 : ---TG---TTCTTCAAAAATATGGTATG----GTAGTAA---TTAGATATATGCCTA-TTTCAGCTACAT---------ATAGGATTTT---------GGTTACATA-----TGTGTCAGATTTATTACAT-TTGT-------------C-TTT-T-TTTCTA-AATAGTTACAAATATGCCCTTT-------T-AGTAACATGTGTGTCTTTTTAGTTACATATGTGC----TTTA---GTT
gi|10 : GATATTGTATATTATAAAGACTCTATATTC-AATAAACACGG-----AAAAATCACTCATCCACG----TTAT-GG------GCccatgtaacatctcaatcacgttgtttatccgacgaatattgtgaatggcgtcattttaagaaaattcaagtaagtacatgcattttttttatatattaggttatctttatcatttaataagaaaggaatacacagttatatacagaggcgccctacttatgactttaaaattctcaattagcagacgcttagtcttaataaggagattttaaagtcttaaataaaaaaaaacttagtcctaataaggatattttaaagtctttaataaaactcgaagtcctaataaggagaattggaagtcttcaataaaataagtcctacttagtttttctgataaaacattttgatttggcaccgtatatgattatatgtttactatatatgtataatgaccaaaacagcttataatgaaattgtgtatacgactgtgacagacgatattgtatattataaagactctatattcaataaacacggaaaaatcactcatccacgttatgggc
gi|11 : aactaaagcacatatgtaactaaaaagacacacatgttactaaaagggcatatttgtaactatttagaaaaaaagacaaatgtaataaatctgacacatatgtaaccaaaatcctatatgtagctgaaataggcatatatctaattactaccataccatatttttgaagaacaccatgtaacatctcaatcacgttgtttatccgacgaatattgtgaatggcgtcattttaagaaaattcaagtaagtacatgcattttttttatatattaggttatctttatcatttaataagaaaggaatacacagttatatacagaggcgccctacttatgactttaaaattctcaattagcagacgcttagtcttaataaggagattttaaagtcttaaataaaaaaaaacttagtcctaataaggatattttaaagtctttaataaaactcgaagtcctaataaggagaattggaagtcttcaataaaataagtcctacttagtttttctgataaaacattttgatttggcaccgtatatgattatatgtttactatatatgtataatgaccaaaacagcttataatgaaattgtgtatacgactgtgacagacTACA---TG---TTCGTCAAAAATATGGTATG----GTAGTAG---TTACATATATGCCCG-TTTCAGTTACAT---------ATAAGATTTT----------GTTACATA-----TGTGTCCGATTTGTTACAT-TTATGCAATGTCT--G-T-TTT-TATTTCTA-AATAGTTACAAATATGTCTTTT-------T-AGTTACATATGTTTCCTTTTAGTCACATATGTGC----TTTA---GTTACATATGTGACCC
gi|12 : gcttcattttaagctttaaattttgtagttgtaaaactcacggataattcattattgttctatattaattagttttcaatatccgcgtgtgtgtgcgtgtgttg-TTT-T-TTTTTA---TAGTTACAAATATGCCCTTT-------T-AGTTACATATGTGTCCTTTAAGTTACATATTTGC----TTTA---GTTACATTTGTGACCacatctcaatgacggtgtttatccggcgaaaactaaagtaagtacatacattttttatatattaggttatctttatcatttaataagaaaggaatacacatttatatacggaggcgccctactcatgactttaaaactcccaattagtagacgctaagtcctagttaggagattttaaagtcttaaataaaaaaaactttgtcctaattaggatattttaaagtcttaaataaaacactaagtcctaataagcagacttggaagtcttcaataaaaataactaagccta
gi|13 : gcaagtcgacaaacgttccgcataaaggtcccttaatagatcgtgatcaaaatcatcgtaataaaaaagcaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttttatcatcatcatggttattgtcatttgctgagacgttcttaacatcccttgatttttttattctacatgtacataaaagtcgttctagatccaatactacgtctttcctccagccagcatcattctaatttaatcatatttctattctctatgaaatttcaccagtattatgtaaaaatcagttttcgttaatgtgtaaatctgttaACTACATATTTCATACTAATGTTAAATGAACTTCAGCATGTAGTCCGGATCACAACCTTAGACAACACGGTGAATTATAAAAAATAATGAGTGTA-----AGCTCTTTTGGTCAGTATACGTACACTAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATC---ACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TGTTATTCGTCAAAAATCTATCATGTTTCGTGGTAG---TTACATAAATGCCCG-TTTCAGTTACAT---------ATAAGAT--------------------------TGTGTCCGATTTGTTACAT-TTGTGCCCTGTC---G-T-TTT-C-TTTCTA-AATAGTTACAAATGTACCCATT-------T-AGTTACATATGTGTCCTTTAAGTTTCATATGTGC----TTTA---GTTACATATTTGACCCttgttacat
gi|15 : ---TG---TTCGTC--AAATATGGTATG----ACAGTTG---TTACATATATGCCTG-TTTCAGTTACAT---------ATAGGATATT---------GGTTACATA-----TGTGTCCGA------------TGTGCTATGTCGGGG-T-TTT-T-TTCCTA-AAAAGTTACAAATATGGCCTTT-------T-AGTCACATATGTGTCCTTTTAGTTACTTATGTGC----TTTA---GTTACATATGTGACCCcaacacacgttatatgtttagttgaaacacaatacaatataatatattta
gi|16 : tgttg---TG---TTCGTCAAAAATATGATATG----GTAGTAG---TTACATATATGCCCG-TTCCAGTTATAT---------ATAGGATTTC---------GGTTACATA-----GGTGTCCGATTTGTTACTT-TTGTGCCATGTC---G-T-TTT-T-TT--TA-AATAGTTACAAATATGCCCTTT-------T-TGTTACATATGTGTCCATTTAGTTACATATGTGC----TTTA---GTTACATATGTGACCCacatgtatcacgttgtttatcgggcgaaaattgtgtatgccgttgttttaagaaaaaatcatgtaagtacaagtatttttgatatattaggttatctatatcatttaataggaaatgaatacacagtta
gi|18 : tttattaattactgttagttttccattttataagttcacactttaatatacaagggacgtctgttg-----TGATAT---ATAT-ATAAT----CTTT-TTTTAA------------------ATCACACATCCGTGTCGGATTT-GG------GCTA-----------AATGCTT-ATTTGTACGTGCAGCTCGAGCCCGTGCGTTAGTAATAGTGACTGTA----------Tggtaacatctcaatcacggtgttt
gi|19 : ttttgtgatgattgtttgacatattaagaatcaaacagtctgacaagataaTTGTTACAT-TGTTGCTATGTT---GGT-TTT-T-TTTCTA-AATAGTTACAAATATTCCCTTTAAGCTTTT-AGTAACGTATGTCTCCTTTTAGTTACATATGTGC----TTTA---GTTACATATGTGACCC
gi|2 : gtttgtttTGGTAGAAATTACAAACATGCCTG-TTTAAGTTACAT---------GTAGGATTTT---------GGTTACATA-----TATGTCCGATTTATTACAT-TTGTGCTATGTC---G-G-TTT-T-TTTCTA-AATAGTTACAAATATGCCCTTT-------T-AGTAATATATGTGTCCTTTTGGTTACATATGTAC----TTTA---GTTACATATGTGACCC
gi|2 : cgtttgttgCAT---------ACACAATTTT---------GGCCGGATAAACACCGTGACTGAGATGTTACATGTTGTGCATGATG---G-T-ATG-G-T----A-GA-AATTACAAACATGCCTGTT-------TAAGTTACATGTAGG--ATTTTGGTTACATATATGTCCGATTTA----TTACATTTGTGtaccatcatgcacaacatgtaacatctcagtcacggtgtttatccggccaaaattgtgtatggcgtcgttttaagaaaattcaagtgagtacatgcatttttgatatattaggttatctttatcatttagttagaaaggaatacacagttatatacggaagcaccctgcttatgactttaaaactcccattaaatagacgctaagtcctaattaggagatttttaaagtcttaaattaacaaacttcgtcctacttaggatattttaaagtcttaaataaaacactaagtcctattaaggtgaatcggaagtcttcattaaaataagtcctaattagtttttttctgatagaacactatgaattggcaccgtatatgattatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgagcccgtgcgttagttatagtgactgtaagagaacgtataaataacataaataaaataacaaaatatcactataaaagtgcataaaacagcagctgaaatcggaaatgtttattttccttaaagcatgaccaccagttcatcagataggaaaacatcggtttagagtaattttatctgctttttattctaaatattaatcaaatccatatgtgcaatattttaattatgttcgaaatcggga
gi|2 : cgtttgttggggtcacatatgtaactaaagtacatatgtaaccaaaaggacacatatattactaaaagggcatatttgtaactatttagaaaaaaaccgacatagCTCGAGCCCGTGCGTTAGTTATAGTGACTGTAAGAGAACGTATAAATAACATAAATAAAATAACAAAATATCACTATAAAAGTGCATAAAACAGCAGCTGAAATCGGAAATGTTTA-T-TTTCCTTAAAGCATGACCACCAGTTCATCAGATAGGAAAACATCGGTTTAGAGTAATTTTATCTGCTTTTTA--TTCTAA---ATATTAATCAAATCCATA---TGTGCAATATTTTAATTATGTT-CGAAATCGGGAgcgtcgttttaagaaaattcaagtgagtacatgcatttttgatatattaggttatctttatcatttagttagaaaggaatacacagttatatacggaagcaccctgcttatgactttaaaactcccattaaatagacgctaagtcctaattaggagatttttaaagtcttaaattaacaaacttcgtcctacttaggatattttaaagtcttaaataaaacactaagtcctattaaggtgaatcggaagtcttcattaaaataagtcctaattagtttttttctgatagaacactatgaattggcaccgtatatgattatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgagcccgtgcgttagttatagtgactgtaagagaacgtataaataacataaataaaataacaaaatatcactataaaagtgcataaaacagcagctgaaatcggaaatgtttattttccttaaagcatgaccaccagttcatcagataggaaaacatcggtttagagtaattttatctgctttttattctaaatattaatcaaatccatatgtgcaatattttaattatgttcgaaatcggga
gi|20 : cgtttgttggggtcacatatgtaactaaagtacatatgtaaccaaaaggacacatatattactaaaagggcatatttgtaactatttagaaaaaaaccgacatagcacaaatgtaataaatcggacatatatgtaaccaaaatcctacatgtaacttaaacaggcatgtttgtaatttctaccataccatcatgcacaacatgtaacatctcagtcacggtgtttatccggccaaaattgtgtatggcgtcgttttaagaaaattcaagtgagtacatgcatttttgatatattaggttatctttatcatttagttagaaaggaatacacagttatatacggaagcaccctgcttatgactttaaaactcccattaaatagacgctaagtcctaattaggagatttttaaagtcttaaattaacaaacttcgtcctacttaggatattttaaagtcttaaataaaacactaagtcctattaaggtgaatcggaagtcttcattaaaataagtcctaattagtttttttctgatagaacactatgaattggcaccgtatatgattatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTACATT-----TGTGTCCGATTTGTTACAT-TTGTGCCCTGTC---G-T-TTTTT-TTTCTA-AATAGTTACAAATGTGCCCTTT-------T-AGTTACATATGTGCCCTTTTAGTTACATATGTG
gi|21 : GTGTCCGATTTGTTACAT-TTGTGCCCTATC---G-T-TTT-T-TTacccca
gi|3 : ggcaactttccagtaatctgtAAAGGAACCACTGA---AAT-----TGATATTGTATATTATAAAGA--CTATATTTTAATAAAAACGT-----AAAAATTACTCATCCGCGTCGATTTT-GG------GCTA-----------AATGCTTGATTTGTACGTGCAGCTCGAGCCTGTGCGTTAGTTATAGTAACTGTA----------TAAAGAA----AA-AGCATAA-AAAACATCACTATAAAAGTGCATAAGACAGCAGCTGAAATCGGAAATGTTCAATATTTCCTTGAAGCATGGCCACCAGTTCATCAGATAGGTAAACATCGGTTTAGAATAATTTTTTCTGCTTTTTA--TTCTAA---ATATTAATCAAATCCATAATATGTGCAATATTTCAATTATGTTGCAAAATTGCAAAACACTTTCTGCTCGAATTTACGTGAAGTCATGACGTACCTTTTAGAACCTAGAACACATGTCCAATTCGAAAATATTAAGGATCAAATTGTTGAGATTAATTATATTTTAAGCCGAAAAATAAAGGATTAAAGTTATTTCCTGAGATACCAATATGCCAGCGAATACAAAGTGCACTTCAAGTCAAGCATATTGCTTCAACAAGCGAATATTTAACTAAT-TTTAGCCTTAATAGGG-TCGTTTTTGGATATTTTCATGGTTTAATAATTACCTCTAGTACACGTCTTACTATGCACTTAAACTACATATATCATACTAATGTTTAAGAAATTTTAGCATGTTGTCCAGATCACAACCTAAGACAACACTGTGAATTACGAAAAATATTGAGTGTCGGGTTAGCTCTTT-------------TACACAAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATCACAACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TGTTCTTCGTCAAAAATCCAGCATGTTTCGTGATAG---TTACATATATGTCCG-TTTCAGTACCAT---------ATAAGATTTT---------AGTTACATT-----TGT
gi|4 : ---TG---TTCGTCAAAAATATGGTATG----GTAGTAG---TTACATATATATCAG-TTTCAGTTACAT---------ATAGGGTTTT---------GGTTACATA-----TGTGTCCGATTTATTACAT-TTGTGCTATGTC---G-G-GT--------TACAATAGTTACAAATATGCCCCTT-------T-AGTAACATATGTGTCCTTTAAGTTACAAATGTGC----TTTG---GTTACATATGTGACCC
gi|4 : gtctgttgCTCGAGCCCGTGCGTTAGTTATTGTGACTGTA----------TAAAGAA----AA-AACATAACAAAACATCACTATAAAAATGCATAAGAAAGCAACTGAAATCGGAAATGTTTAATATTTTCTTAAAGCATGACCACCAGTTCATCAGATAGGTAAACATCGGTTTAGAATAATTTTATCTGCacatgtaacatctcaatcacggtgtttatccgacgaaaattgtgtatggcgtcgttttaagaaaattcaagtaagtacatgcatttttgatatattaagttatctttatcatttaataagaaaggaatatacagttatatacggaggcaccctacttatgactttaaaactcccaattagtagtcgctaagtcctaattaggagattttaaagtcttaaataaaacactaagtcctaattaggagcattggaagtcttcaaaaaaaataactaagtcgtaattagtttttctgatagaacattatgaattggcaccgtatatgagtatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgagcccgtgcgttagttattgtgactgtataaagaaaaaacataacaaaacatcactataaaaatgcataagaaagcaactgaaatcggaaatgtttaatattttcttaaagcatgaccaccagttcatcagataggtaaacatcggtttagaataattttatctgc
gi|5 : gtctgttggggtcacatatgtaaccaaagcacatttgtaacttaaaggacacatatgttactaaaggggcatatttgtaactattgtaacccgacatagcacaaatgtaataaatcggacacatatgtaaccaaaaccctatatgtaactgaaactgatatatatgtaactactaccataccatatttttgacgaacaacatgtaacatctcaatcacggtgtttatccgacgaaaattgtgtatggcgtcgttttaagaaaattcaagtaagtacatgcatttttgatatattaagttatctttatcatttaataagaaaggaatatacagttatatacggaggcaccctacttatgactttaaaactcccaattagtagtcgctaagtcctaattaggagattttaaagtcttaaataaaacactaagtcctaattaggagcattggaagtcttcaaaaaaaataactaagtcgtaattagtttttctgatagaacattatgaattggcaccgtatatgagtatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATA---TGTGCAATATTTCAATTATGTGGCAAAATCGCGAAATG-TTTCTGTTCCGATTTACGTGAAGTCATGACGTCACTTTTAGAACCTAGAAAAAATGTCCAATTCGAACATATTTACAATCAAATTGTTGAGATTAATTAAAATATTAGCCGAAAAATAAAGGACTAAAGTTATTTTCTGAGAGACCAATACGCCAGCAAATACTAAGTGCACTTTAAGTCAAGCATACTGCTTCAACAAGCGAATATTTAAGTAATATTAAGCCTTAATAAGG-TCG-TTTTGTATATTTTTATGGTTGAATAATTACCTCTAGCACACGTCTTACGATGCACTTTAACTATATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTAGTCCGGATCACAACCTAATACAATATATTGAATTACGAAAAATAATAAGTGTCGGGTTAGCTCTTTTGGTCACTATACATACACTAGATTAACAATATCAGTATTAACAACATATATTGCAGACTATCACAACTACATATTACAATCGCAAAGTAACGTGCACACAGTAAAATGT----TA---TTTGTCAAAATGCTAGCATGTTTCGTGGTAG---TTACATATATGCCCA-TTTCAGTTACAT---------ATAAGATTAT---------AGTTACAAT-----TGTGTCCGATTTGATACAT-TTGTGCGCTGTC---GTT-TTT-T-TTTCTA-AATAGTTAAAAATGTGCCCTTT-------T-AGTTACATATGTGTCCTTTAAGTTACATATGTGC----TTTA---GTTACATATGTGACCC
gi|6 : atatttcagattgtgacacttctggggcattcttctaggatgctttacatatgatggtatttgtattgtaacctacgtatgttgTCATATCCATA---TGTGCAATATTTCATTTATGTTGCAAAATCGCGAAATGCTTTCTGTTCCGATTTACGTGAAGTCATGACGTCAATTTTAGAACCTAGAAAAAATGTCCAATGCGAAAATATTTACGATCAAATTGTTGAGATTAATTAAAATTTTAGCCGAAAAATAAAGGGCTAAAGTTATTTTCTGAGAGACCTATACGCCAGCAAATACAAAGTGCACTTTAAGTCAAGCATACTGCTTCAACAAGCGAATATTTAAGTAATATTAAGCCTTAATAGGG-TCG-TTTTGAATATTTTCATGGTTGAATAATTACCTCTAGCACACGTCTTACTATGCACTTAAACTACATATTTCATACTAATGTTAAAGAAAGTTCAACATGTAGTCCGGATCACAACCTAA--------GGTGAATTACAAAATATAATGAGT-TCGGGTTAGCTCTTTT-GTCAGTATACATACACTAGATTAACAATATCGGTATTAACAACACATATTTGAGACTATCACAACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATACA---TG---TTTGTCAAAATTCTAGCATGTTTCATGGTAG---TTACATAAATGCACA-TTTCAGTTACAT---------ATAAGATTTA---------AGTTACAT------TGTGTCCTTTTAGTTACAT-ATGTGC-----------T-T--------------TAGTTACATATGTGACC-----------------CATATGTA---TTTAAAGCACATATGTAA----CTTAAAGGACACATATGTAACt
gi|6 : gAG---TTACATTTGTGCCCGATTT--GTTACATTGGTGCCCTGTTGGGTTTTTTTCTAAATAGTTACAAA-----TGTGCCCTTTTAGTTACAT-ATGTGTCC-------------------TTTA----AGTTACATATGTGC---TT-------T-AAATACATATGGGTC---------ACATATGTAA----CTAA---AGCACATATGTAACtaaaagggcacatttgtaactatttagaaaaaaacccaacagggcaccaatgtaacaaatcgggcacaaatgtaactcaaatc
gi|6 : gtcatatccatatgtgcaatatttcatttatgttgcaaaatcgcgaaatgctttctgttccgatttacgtgaagtcatgacgtcaattttagaacctagaaaaaatgtccaatgcgaaaatatttacgatcaaattgttgagattaattaaaattttagccgaaaaataaagggctaaagttattttctgagagacctatacgccagcaaatacaaagtgcactttaagtcaagcatactgcttcaacaagcgaatatttaagtaatattaagccttaatagggtcgttttgaatattttcatggttgaataattacctctagcacacgtcttactatgcacttaaactacatatttcatactaatgttaaagaaagttcaacatgtagtccggatcacaacctaaggtgaattacaaaatataatgagttcgggttagctcttttgtcagtatacatacactagattaacaatatcggtattaacaacacatatttgagactatcacaactacatattacaatcgcaaagtatagtgcacacagtaaaatacatgtttgtcaaaattctagcatgtttcatggtagttacataaatgcacatttcagttacatataagatttaagttacattgtgtccttttaGATTTG---------AGTTACATT-----TGTGCCCGATTTGTTACAT-TGGTGCCCTGTT---G-GGTTT-T-TTTCTA-AATAGTTACAAATGTGCCCTTT-------T-AGTTACATATGTGTCCTTTAAGTTACATATGTGC----TTTA---AATACATATGcaaatc
gi|7 : gtcatatccatatgtgcaatatttcatttatgttgcaaaatcgcgaaatgctttctgttccgatttacgtgaagtcatgacgtcaattttagaacctagaaaaaatgtccaatgcgaaaatatttacgatcaaattgttgagattaattaaaattttagccgaaaaataaagggctaaagttattttctgagagacctatacgccagcaaatacaaagtgcactttaagtcaagcatactgcttcaacaagcgaatatttaagtaatattaagccttaatagggtcgttttgaatattttcatggttgaataattacctctagcacacgtcttactatgcacttaaactacatatttcatactaatgttaaagaaagttcaacatgtagtccggatcacaacctaaggtgaattacaaaatataatgagttcgggttagctcttttgtcagtatacatacactagattaacaatatcggtattaacaacacatatttgagactatcacaactacatattacaatcgcaaagtatagtgcacacagtaaaatacatgtttgtcaaaattctagcatgtttcatggtagttacataaatgcacatttcagttacatataagatttaagttacattgtgtccttttagttacatatgtgctttagttacatatgtgaccATAATGAAACATCACTATAAAAGTGCATATGGTAGCATCTGAAATCGGAAATGTTTAATATTTCCTTAAAGCATGGCCACCAGGTCATCAGATAGGTAAACATCGGTTTAGAATATGTTTATCTGCTTTTTA--ATCTAA---ATATTTATCAAATTCATA---
gi|7 : TGAGAAACCAATACACCAGCAAGTATAAAGTGCACTTTAAGTCAAGCATACTGCTTGAACAAGCGAATATATAAGTAATATTTAGCCTTAATAGGGGTCG-TTTTGAATATTTTCATAGTTGAATAATTGCCTCTAGCACACGTCTTACTATGCACTTATACAACATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTGGTCCGGATCACAACCTAAGACAACACGGTGAATTACGAAAAATAATGAGTGTCGGGTTAACTCTTTTGGTCAGTGTACATACACTAG--------------------------ATACTGGAGAGTATCACAACTACATATTACAATCGCAAAGCAAAGTGCACACAGTAAAATACATGTTG---TTTGTCAAAATTCTAGCATGTTTCGTGGTTG---TTACATTTGTGCCT--TTTTAATTACAT---------ATGTGAgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgtgttaatatgtttaaaaatataatgaacaaaaaatgtatgtaaatgagaaaccaatacaccagcaagtataaagtgcactttaagtcaagcatactgcttgaacaagcgaatatataagtaatatttagccttaataggggtcgttttgaatattttcatagttgaataattgcctctagcacacgtcttactatgcacttatacaacatatttcatactaatgttaaagaaagttcagcatgtggtccggatcacaacctaagacaacacggtgaattacgaaaaataatgagtgtcgggttaactcttttggtcagtgtacatacactagatactggagagtatcacaactacatattacaatcgcaaagcaaagtgcacacagtaaaatacatgttgtttgtcaaaattctagcatgtttcgtggttgttacatttgtgcctttttaattacatatgtgaccccagcagacgtc
gi|8 : ataatgaaacatcactataaaagtgcatatggtagcatctgaaatcggaaatgtttaatatttccttaaagcatggccaccaggtcatcagataggtaaacatcggtttagaatatgtttatctgctttttaatctaaatatttatcaaattcatagttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgtgttaatatgtttaaaaatataatgaacaaaaaatgtatgtaaaTAG---TTACAAACATGCCC--TTTTAGTTACAC---------ATGTGACCCT---------A---ACACA-----CGTGccccagcagacgtc
gi|8 : at---TG---TTCGTAAAAAATATGGTAAG----GTAGTAG---TTACATATATGCCTG-TTTCAGTTACAT---------ATAGGATTTT----------------------------------CGTTACAT-TTGTACTTTGTC---G-T-TTT-T-TTTCTA-AATAGTTACAAACATGCCCTTT-------T-AGTTACACATGTGACCCTtttagaaaaaaaacgacaaagtacaaatgtaacgaaaatcctatatgtaactgaaacaggcatatatgtaactactaccttaccatattttttacgaacaacatgtaacatctctatcgcggtgtttatccagcgaaaattgtgtatggcgtcgttttaagaaaataccagttagcacatgcattttttatatattatgttatctttatcatttaataagaaaggaatactgagttatatacggaggcgccctacttatgactttaaaactcccaattagtagacgcttatccctaattaggacactttaaagtcttaaataaaaaaaaacttagtccttataaggatattttaaagttttaaataaatttgaagtcttcaataaaataactaagtcctaattagtttttctgatagactataatgaattggcaccgtacgctcccgtagttgtgtataatttgcacccagttgaaccacttgaaacactgagtgatttccctttgttttgtatatatcgtttgtacattgtttcaaaggaaccactgaaattgatattgtatattataaagactatattttaataaaaacgtaaaaattactcatccgcgtcgattttgggctaaatgcttgatttgtacgtgcagctcgagcctgtgcgttagttatagtaactgtat
gi|8 : atcacgtgtgttCAAAGGAACCACTGA---AAT-----TGATATTGTATATTATAAAGA--CTATATTTTAATAAAAACGT-----AAAAATTACTCATCCGCGTCGATTTT-GG------GCTA-----------AATGCTTGATTTGTACGTGCAGCTCGAGCCTGTGCGTTAGTTATAGTAACTGTA----------Tacatgtaacatctctatcgcggtgtttatccagcgaaaattgtgtatggcgtcgttttaagaaaataccagttagcacatgcattttttatatattatgttatctttatcatttaataagaaaggaatactgagttatatacggaggcgccctacttatgactttaaaactcccaattagtagacgcttatccctaattaggacactttaaagtcttaaataaaaaaaaacttagtccttataaggatattttaaagttttaaataaatttgaagtcttcaataaaataactaagtcctaattagtttttctgatagactataatgaattggcaccgtacgctcccgtagttgtgtataatttgcacccagttgaaccacttgaaacactgagtgatttccctttgttttgtatatatcgtttgtacattgtttcaaaggaaccactgaaattgatattgtatattataaagactatattttaataaaaacgtaaaaattactcatccgcgtcgattttgggctaaatgcttgatttgtacgtgcagctcgagcctgtgcgttagttatagtaactgtat
gi|9 : atcacgtgtgttagggtcacatgtgtaactaaaagggcatgtttgtaactatttagaaaaaaaacgacaaagtacaaatgtaacgaaaatcctatatgtaactgaaacaggcatatatgtaactactaccttaccatattttttacgaacaacatgtaacatctctatcgcggtgtttatccagcgaaaattgtgtatggcgtcgttttaagaaaataccagttagcacatgcattttttatatattatgttatctttatcatttaataagaaaggaatactgagttatatacggaggcgccctacttatgactttaaaactcccaattagtagacgcttatccctaattaggacactttaaagtcttaaataaaaaaaaacttagtccttataaggatattttaaagttttaaataaatttgaagtcttcaataaaataactaagtcctaattagtttttctgatagactataatgaattggcaccgtacgctcccgtagttgtgtataatttgcacccagttgaaccacttgaaacactgagtgatttccctttgttttgtatatatcgtttgtacattgtttTCTGCTCCGATTTACGTGAAGTCATGACGTCACTTTTAGAATGTAGAAAAAATGTCAAATTCGAAAATATTTACAATCAAATTGTTGAAATTGATTATATTTTTAGCCGAAAAATAAAGGTCT---GTTATTTTCTAATAGACCAATACGCCAGCGATTACAAAGTGCACTTTAAGTCAAGCATATTGCCTCAACAAGCGAATATTTAAGTAATATTAAGCCATAATAGGG-TCG-TTGTGAATATTTTCATGGTTGAATAATTACCTTTAGTACACGTCTTACTATGCACTTAAACTAAATATTTCATACTAATATTAAAGAAAGTTCAGCATGTAGTCCGGATCACA-------ACAACACGGTGAATTACGAAAAA-AATGAGTGTCGGGTTAACTTTTTTGGTCAGTATACATACACTAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATCACAGCTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCATGTTG---TTCGTCAAAAATCTAGCATGTTTCGTGGTAG---TTACATATATGCCCG-TTTCAGTTACAT---------ATAAGATTTT---------AGTTACATT-----TGTGTCCAATTTGTTACAT-TTGTGCCCTGTC---G-T-TTT-T-TTTCTA-AATAGTTACAAATGTGCCCTTT-------T-AGTTACATATGTGTCTTTTAAGTTACGTATGTGC----TTTA---GTTACATATGTGACCC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GCCAGTCGACAAATGTTCTGAATAAATGTTCCTTACTAGATTGTGATCAACATCATCGTAATAAAAAAGCAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTCATCATCACCATGGTTATCGTCATTTGCTTCTAAAGACGTTCTTAACATCCCATGTTTTGTTTTTTATTCTGAATTCTACATAAAAGTCGCTCTATATCCAATACTACATCTTTCCTGCAACTGACAACATTTTAATTTACTCATATTTCTATTCTCTATG
Unaligned ( gi|17 ): AGGCGCTGTACTTATGACTTTAAAACTCACAATTAGTAGACGCTAAGTCAAAATTAGGAGCTTTTGAAGTCTTAAATAAAAAACTTAGTCCTAATAAGGGTATATCTAAGCCTTAAATAAAATACTAAGTCCTTATTAGAAGAGTTGGATGTCTTTAATAAAATCACTAAGTCCTAATTAGTTTTTATGATAGAACATTATGAAT
Alignments
lowQualScore : 222 33333 1 22222 222222 44444444444 2222222222 2222 1 11 111 111 111 111 1111 1111111111 111111
lowQualScore : 6 333 33333 3 3 0 55555 8 333333 77777777777 2 9999999999 1111 0 6 1 6 0 33 777 111 2 2 1 1 1 1 0 0 6 6 4 0 1 000 000 1 9999 444 2 999999999 0 1111111111 000000 2 55 666 4 2 2 2 2 7777777 2 1 5555 444
lowQualScore : . ... ..... . . . ..... . ...... ........... . .......... .... . . . . . .. ... ... . . . . . . . . . . . . . ... ... . .... ... . ......... . .......... ...... . .. ... . . . . . ....... . . .... ...
lowQualScore : 7 333 33333 2 2 0 00000 0 000000 55555555555 5 2222222222 2222 0 4 4 0 8 88 555 777 0 5 0 4 4 4 8 7 7 7 3 7 9 888 888 5 3333 444 5 444444444 7 4444444444 666666 2 77 111 4 1 1 1 2 2222222 2 8 3333 444
consensus : CAAAGGAACCACTGA---AAT-----TGATATTGTATATTATAAAGACTATAT-TTTAATAAAAACGT-----AAAAATCACTCATCCGCGTCGGTTTT-GG------GCTA-----------AATGCTTGATTTGTACGTGCAGCTCGAGCCCGTGCGTTAGTTATAGTGACTGTA----------TAAAGAA----AA-AACATAACAAAACATCACTATAAAAGTGCATAAGACAGCAGCTGAAATCGGAAATGTTTAATATTTCCTTAAAGCATGGCCACCAGTTCATCAGATAGGTAAACATCGGTTTAGAATAATTTTATCTGCTTTTTA--TTCTAA---ATATTAATCAAATCCATA---TGTGCAATATTTCAATTATGTTGCAAAATCGCGAAACGCTTTCTGCTCCGATTTACGTGAAGTCATGACGTCACTTTTAGAACCTAGAAAAAATGTCCAATTCGAAAATATTTACGATCAAATTGTTGAGATTAATTATAATTTTAGCCGAAAAATAAAGGGCTAAAGTTATTTTCTGAGAGACCAATACGCCAGCGAATACAAAGTGCACTTTAAGTCAAGCATACTGCTTCAACAAGCGAATATTTAAGTAATATTAAGCCTTAATAGGG-TCG-TTTTGAATATTTTCATGGTTGAATAATTACCTCTAGCACACGTCTTACTATGCACTTAAACTACATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTAGTCCGGATCACAACCTAAGACAACACGGTGAATTACGAAAAATAATGAGTGTCGGGTTAGCTCTTTTGGTCAGTATACATACACTAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATCACAACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TG---TTCGTCAAAAATCTGGCATGTTTCGTGGTAG---TTACATATATGCCCG-TTTCAGTTACAT---------ATAGGATTTT---------GGTTACATA-----TGTGTCCGATTTGTTACAT-TTGTGCCCTGTC---G-T-TTT-T-TTTCTA-AATAGTTACAAATGTGCCCTTT-------T-AGTTACATATGTGTCCTTTNAGTTACATATGTGC----TTTA---GTTACATATGTGACCC
Reference ( family-968 ) : CAAAGGAACCACTGA---AAT-----TGATATTGTATATTATAAAGACTATAT-TTTAATAAAAACGT-----AAAAATCACTCATCCGCGTCGGTTTT-GG------GCTA-----------AATGCTTGATTTGTACGTGCAGCTCGAGCCCGTGCGTTAGTTATAGTGACTGTA----------TAAAGAA----AA-AACATAACAAAACATCACTATAAAAGTGCATAAGACAGCAGCTGAAATCGGAAATGTTTAATATTTCCTTAAAGCATGGCCACCAGTTCATCAGATAGGTAAACATCGGTTTAGAATAATTTTATCTGCTTTTTA--TTCTAA---ATATTAATCAAATCCATA---TGTGCAATATTTCAATTATGTTGCAAAATCGCGAAACGCTTTCTGCTCCGATTTACGTGAAGTCATGACGTCACTTTTAGAACCTAGAAAAAATGTCCAATTCGAAAATATTTACGATCAAATTGTTGAGATTAATTATAATTTTAGCCGAAAAATAAAGGGCTAAAGTTATTTTCTGAGAGACCAATACGCCAGCGAATACAAAGTGCACTTTAAGTCAAGCATACTGCTTCAACAAGCGAATATTTAAGTAATATTAAGCCTTAATAGGG-TCG-TTTTGAATATTTTCATGGTTGAATAATTACCTCTAGCACACGTCTTACTATGCACTTAAACTACATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTAGTCCGGATCACAACCTAAGACAACACGGTGAATTACGAAAAATAATGAGTGTCGGGTTAGCTCTTTTGGTCAGTATACATACACTAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATCACAACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TG---TTCGTCAAAAATCTGGCATGTTTCGTGGTAG---TTACATATATGCCCG-TTTCAGTTACAT---------ATAGGATTTT---------GGTTACATA-----TGTGTCCGATTTGTTACAT-TTGTGCCCTGTC---G-T-TTT-T-TTTCTA-AATAGTTACAAATGTGCCCTTT-------T-AGTTACATATGTGTCCTTTNAGTTACATATGTGC----TTTA---GTTACATATGTGACCC
gi|1 : CAATGGAAC-ACAGACGCAATCTACATAATTTTTTATAT-ATAG---TTATAT-ATTTATAAAATCTTTTTTTCAAAATCGCTGATCTGCGTCGGTTTTCGGTAAAATGCTACATTTCGGTAAAATGCTTGATTTGTACGTGCAGCTCGA-CCCTTTC--T--TTACAGTGACTGTA----------TAAAGAA----AA-AACATAATAAAACATCACTATAAAAGTGCATATGACAGCAGCTGAAATCGGAAATGTTTTTAATTTCCTTAAAGCATGGTCACCAGTTCATCAGATAGGTAAATATCGGTTTAGAATAATTTTATCTGCTTTTTAAATATTAATTAATATTAATCAAATCCATA---TGTACAATATTTCAATTATGTTGCAAAATCGCGAAATGCTTTCTGCTCCAATTTACCTGAAGTCATGCCGTCTCTTTTAGAACCTAGAAAAAATGTCTAATTCGAAAATATTTACGATCAAATTGTTGAGATTAATTATAATTTTAGCCGAAAAATAAAGGGCTAAAGTTATTTTCTGAGAGACCAATACGCCAGCAAATACAAAGTGCACTTTAAGTCAAGCATATTGCTTCAACAAGCGAGTATTTAAGTAATAATAAGCCTTAATAGGG-TCG-TTTTGAATAATTTCATGGTTGAATAATTCCTTCTAGCACACGTCTTACTATGCACTTAAACTACATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTAATCCGGATCACAACCTAAGACAACACGGTGAATTACGAAAAATAATGAGTGTCGGGTTAGTTCTTTTGGTCAGTATACATATACTACATTAACAATATCAGTATTTACAACATATATTGGAGACTATCATAACTACATATTGCAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TG---TTCGTCAAAAAGCTAGCATGTTTCGTGGTAG---TTACATATATGCCCG-TTTCAGTTACAT---------ATACGATTTT---------AGTTACATT-----TGTGTCCGATTTGTTACAT-TTGTGCCCTGTC---A-T-TTT-T-TTTCTA-AATAGTTATAAATGTGCACTTT-------T-AGTTACATATGTGTCCTTTTAGTTACATATGTGC----CTTA---GTTACATATGTGACCC
gi|10 : ---TG---TTCTTCAAAAATATGGTATG----GTAGTAA---TTAGATATATGCCTA-TTTCAGCTACAT---------ATAGGATTTT---------GGTTACATA-----TGTGTCAGATTTATTACAT-TTGT-------------C-TTT-T-TTTCTA-AATAGTTACAAATATGCCCTTT-------T-AGTAACATGTGTGTCTTTTTAGTTACATATGTGC----TTTA---GTT
gi|10 : GATATTGTATATTATAAAGACTCTATATTCAATAAACACGG-----AAAAATCACTCATCCAC----GTTAT-GG------GCccatgtaacatctcaatcacgttgtttatccgacgaatattgtgaatggcgtcattttaagaaaattcaagtaagtacatgcattttttttatatattaggttatctttatcatttaataagaaaggaatacacagttatatacagaggcgccctacttatgactttaaaattctcaattagcagacgcttagtcttaataaggagattttaaagtcttaaataaaaaaaaacttagtcctaataaggatattttaaagtctttaataaaactcgaagtcctaataaggagaattggaagtcttcaataaaataagtcctacttagtttttctgataaaacattttgatttggcaccgtatatgattatatgtttactatatatgtataatgaccaaaacagcttataatgaaattgtgtatacgactgtgacagacgatattgtatattataaagactctatattcaataaacacggaaaaatcactcatccacgttatgggc
gi|11 : aactaaagcacatatgtaactaaaaagacacacatgttactaaaagggcatatttgtaactatttagaaaaaaagacaaatgtaataaatctgacacatatgtaaccaaaatcctatatgtagctgaaataggcatatatctaattactaccataccatatttttgaagaacaccatgtaacatctcaatcacgttgtttatccgacgaatattgtgaatggcgtcattttaagaaaattcaagtaagtacatgcattttttttatatattaggttatctttatcatttaataagaaaggaatacacagttatatacagaggcgccctacttatgactttaaaattctcaattagcagacgcttagtcttaataaggagattttaaagtcttaaataaaaaaaaacttagtcctaataaggatattttaaagtctttaataaaactcgaagtcctaataaggagaattggaagtcttcaataaaataagtcctacttagtttttctgataaaacattttgatttggcaccgtatatgattatatgtttactatatatgtataatgaccaaaacagcttataatgaaattgtgtatacgactgtgacagacTACA---TG---TTCGTCAAAAATATGGTATG----GTAGTAG---TTACATATATGCCCG-TTTCAGTTACAT---------ATAAGATTTT---------G-TTACATA-----TGTGTCCGATTTGTTACAT-TTATGCAATGTCT--G-T-TTT-TATTTCTA-AATAGTTACAAATATGTCTTTT-------T-AGTTACATATGTTTCCTTTTAGTCACATATGTGC----TTTA---GTTACATATGTGACCC
gi|12 : gcttcattttaagctttaaattttgtagttgtaaaactcacggataattcattattgttctatattaattagttttcaatatccgcgtgtgtgtgcgtgtgttg-TTT-T-TTTTTA---TAGTTACAAATATGCCCTTT-------T-AGTTACATATGTGTCCTTTAAGTTACATATTTGC----TTTA---GTTACATTTGTGACCacatctcaatgacggtgtttatccggcgaaaactaaagtaagtacatacattttttatatattaggttatctttatcatttaataagaaaggaatacacatttatatacggaggcgccctactcatgactttaaaactcccaattagtagacgctaagtcctagttaggagattttaaagtcttaaataaaaaaaactttgtcctaattaggatattttaaagtcttaaataaaacactaagtcctaataagcagacttggaagtcttcaataaaaataactaagccta
gi|13 : gcaagtcgacaaacgttccgcataaaggtcccttaatagatcgtgatcaaaatcatcgtaataaaaaagcaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttttatcatcatcatggttattgtcatttgctgagacgttcttaacatcccttgatttttttattctacatgtacataaaagtcgttctagatccaatactacgtctttcctccagccagcatcattctaatttaatcatatttctattctctatgaaatttcaccagtattatgtaaaaatcagttttcgttaatgtgtaaatctgttaACTACATATTTCATACTAATGTTAAATGAACTTCAGCATGTAGTCCGGATCACAACCTTAGACAACACGGTGAATTATAAAAAATAATGAGTGTA-----AGCTCTTTTGGTCAGTATACGTACACTAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATC---ACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TGTTATTCGTCAAAAATCTATCATGTTTCGTGGTAG---TTACATAAATGCCCG-TTTCAGTTACAT---------ATAAGAT--------------------------TGTGTCCGATTTGTTACAT-TTGTGCCCTGTC---G-T-TTT-C-TTTCTA-AATAGTTACAAATGTACCCATT-------T-AGTTACATATGTGTCCTTTAAGTTTCATATGTGC----TTTA---GTTACATATTTGACCCttgttacat
gi|15 : ---TG---TTCGTC--AAATATGGTATG----ACAGTTG---TTACATATATGCCTG-TTTCAGTTACAT---------ATAGGATATT---------GGTTACATA-----TGTGTCCGA------------TGTGCTATGTCGGGG-T-TTT-T-TTCCTA-AAAAGTTACAAATATGGCCTTT-------T-AGTCACATATGTGTCCTTTTAGTTACTTATGTGC----TTTA---GTTACATATGTGACCCcaacacacgttatatgtttagttgaaacacaatacaatataatatattta
gi|16 : tgttg---TG---TTCGTCAAAAATATGATATG----GTAGTAG---TTACATATATGCCCG-TTCCAGTTATAT---------ATAGGATTTC---------GGTTACATA-----GGTGTCCGATTTGTTACTT-TTGTGCCATGTC---G-T-TTT-T-TT--TA-AATAGTTACAAATATGCCCTTT-------T-TGTTACATATGTGTCCATTTAGTTACATATGTGC----TTTA---GTTACATATGTGACCCacatgtatcacgttgtttatcgggcgaaaattgtgtatgccgttgttttaagaaaaaatcatgtaagtacaagtatttttgatatattaggttatctatatcatttaataggaaatgaatacacagtta
gi|18 : tttattaattactgttagttttccattttataagttcacactttaatatacaagggacgtctgttgAAATCACACATCCGTGTCGGATTT-GG------GCTA-----------AATGCTT-ATTTGTACGTGCAGCTCGAGCCCGTGCGTTAGTAATAGTGACTGTA----------Tggtaacatctcaatcacggtgttt
gi|19 : ttttgtgatgattgtttgacatattaagaatcaaacagtctgacaagataatgatatatatataatctttttttTTGTTACAT-TGTTGCTATGTT---GGT-TTT-T-TTTCTA-AATAGTTACAAATATTCCCTTTAAGCTTTT-AGTAACGTATGTCTCCTTTTAGTTACATATGTGC----TTTA---GTTACATATGTGACCC
gi|2 : gtttgtttTGGTAGAAATTACAAACATGCCTG-TTTAAGTTACAT---------GTAGGATTTT---------GGTTACATA-----TATGTCCGATTTATTACAT-TTGTGCTATGTC---G-G-TTT-T-TTTCTA-AATAGTTACAAATATGCCCTTT-------T-AGTAATATATGTGTCCTTTTGGTTACATATGTAC----TTTA---GTTACATATGTGACCC
gi|2 : cgtttgttgCAT---------ACACAATTTT---------GGCCGGATAAACACCGTGACTGAGATGTTACATGTTGTGCATGATG---G-T-ATG-G-T----A-GA-AATTACAAACATGCCTGTT-------TAAGTTACATGTAGG--ATTTTGGTTACATATATGTCCGATTTA----TTACATTTGTGtaccatcatgcacaacatgtaacatctcagtcacggtgtttatccggccaaaattgtgtatggcgtcgttttaagaaaattcaagtgagtacatgcatttttgatatattaggttatctttatcatttagttagaaaggaatacacagttatatacggaagcaccctgcttatgactttaaaactcccattaaatagacgctaagtcctaattaggagatttttaaagtcttaaattaacaaacttcgtcctacttaggatattttaaagtcttaaataaaacactaagtcctattaaggtgaatcggaagtcttcattaaaataagtcctaattagtttttttctgatagaacactatgaattggcaccgtatatgattatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgagcccgtgcgttagttatagtgactgtaagagaacgtataaataacataaataaaataacaaaatatcactataaaagtgcataaaacagcagctgaaatcggaaatgtttattttccttaaagcatgaccaccagttcatcagataggaaaacatcggtttagagtaattttatctgctttttattctaaatattaatcaaatccatatgtgcaatattttaattatgttcgaaatcggga
gi|2 : cgtttgttggggtcacatatgtaactaaagtacatatgtaaccaaaaggacacatatattactaaaagggcatatttgtaactatttagaaaaaaaccgacatagCTCGAGCCCGTGCGTTAGTTATAGTGACTGTAAGAGAACGTATAAATAACATAAATAAAATAACAAAATATCACTATAAAAGTGCATAAAACAGCAGCTGAAATCGGAAATGTTTA-T-TTTCCTTAAAGCATGACCACCAGTTCATCAGATAGGAAAACATCGGTTTAGAGTAATTTTATCTGCTTTTTA--TTCTAA---ATATTAATCAAATCCATA---TGTGCAATATTTTAATTATGTT-CGAAATCGGGAgcgtcgttttaagaaaattcaagtgagtacatgcatttttgatatattaggttatctttatcatttagttagaaaggaatacacagttatatacggaagcaccctgcttatgactttaaaactcccattaaatagacgctaagtcctaattaggagatttttaaagtcttaaattaacaaacttcgtcctacttaggatattttaaagtcttaaataaaacactaagtcctattaaggtgaatcggaagtcttcattaaaataagtcctaattagtttttttctgatagaacactatgaattggcaccgtatatgattatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgagcccgtgcgttagttatagtgactgtaagagaacgtataaataacataaataaaataacaaaatatcactataaaagtgcataaaacagcagctgaaatcggaaatgtttattttccttaaagcatgaccaccagttcatcagataggaaaacatcggtttagagtaattttatctgctttttattctaaatattaatcaaatccatatgtgcaatattttaattatgttcgaaatcggga
gi|20 : cgtttgttggggtcacatatgtaactaaagtacatatgtaaccaaaaggacacatatattactaaaagggcatatttgtaactatttagaaaaaaaccgacatagcacaaatgtaataaatcggacatatatgtaaccaaaatcctacatgtaacttaaacaggcatgtttgtaatttctaccataccatcatgcacaacatgtaacatctcagtcacggtgtttatccggccaaaattgtgtatggcgtcgttttaagaaaattcaagtgagtacatgcatttttgatatattaggttatctttatcatttagttagaaaggaatacacagttatatacggaagcaccctgcttatgactttaaaactcccattaaatagacgctaagtcctaattaggagatttttaaagtcttaaattaacaaacttcgtcctacttaggatattttaaagtcttaaataaaacactaagtcctattaaggtgaatcggaagtcttcattaaaataagtcctaattagtttttttctgatagaacactatgaattggcaccgtatatgattatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTACATT-----TGTGTCCGATTTGTTACAT-TTGTGCCCTGTC---G-T-TTTTT-TTTCTA-AATAGTTACAAATGTGCCCTTT-------T-AGTTACATATGTGCCCTTTTAGTTACATATGTG
gi|21 : GTGTCCGATTTGTTACAT-TTGTGCCCTATC---G-T-TTT-T-TTacccca
gi|3 : ggcaactttccagtaatctgtAAAGGAACCACTGA---AAT-----TGATATTGTATATTATAAAGACTATAT-TTTAATAAAAACGT-----AAAAATTACTCATCCGCGTCGATTTT-GG------GCTA-----------AATGCTTGATTTGTACGTGCAGCTCGAGCCTGTGCGTTAGTTATAGTAACTGTA----------TAAAGAA----AA-AGCATAA-AAAACATCACTATAAAAGTGCATAAGACAGCAGCTGAAATCGGAAATGTTCAATATTTCCTTGAAGCATGGCCACCAGTTCATCAGATAGGTAAACATCGGTTTAGAATAATTTTTTCTGCTTTTTA--TTCTAA---ATATTAATCAAATCCATAATATGTGCAATATTTCAATTATGTTGCAAAATTGCAAAACACTTTCTGCTCGAATTTACGTGAAGTCATGACGTACCTTTTAGAACCTAGAACACATGTCCAATTCGAAAATATTAAGGATCAAATTGTTGAGATTAATTATATTTTAAGCCGAAAAATAAAGGATTAAAGTTATTTCCTGAGATACCAATATGCCAGCGAATACAAAGTGCACTTCAAGTCAAGCATATTGCTTCAACAAGCGAATATTTAACTAAT-TTTAGCCTTAATAGGG-TCGTTTTTGGATATTTTCATGGTTTAATAATTACCTCTAGTACACGTCTTACTATGCACTTAAACTACATATATCATACTAATGTTTAAGAAATTTTAGCATGTTGTCCAGATCACAACCTAAGACAACACTGTGAATTACGAAAAATATTGAGTGTCGGGTTAGCTCTTT-------------TACACAAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATCACAACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TGTTCTTCGTCAAAAATCCAGCATGTTTCGTGATAG---TTACATATATGTCCG-TTTCAGTACCAT---------ATAAGATTTT---------AGTTACATT-----TGT
gi|4 : ---TG---TTCGTCAAAAATATGGTATG----GTAGTAG---TTACATATATATCAG-TTTCAGTTACAT---------ATAGGGTTTT---------GGTTACATA-----TGTGTCCGATTTATTACAT-TTGTGCTATGTC---G-G-GT--------TACAATAGTTACAAATATGCCCCTT-------T-AGTAACATATGTGTCCTTTAAGTTACAAATGTGC----TTTG---GTTACATATGTGACCC
gi|4 : gtctgttgCTCGAGCCCGTGCGTTAGTTATTGTGACTGTA----------TAAAGAA----AA-AACATAACAAAACATCACTATAAAAATGCATAAGAAAGCAACTGAAATCGGAAATGTTTAATATTTTCTTAAAGCATGACCACCAGTTCATCAGATAGGTAAACATCGGTTTAGAATAATTTTATCTGCacatgtaacatctcaatcacggtgtttatccgacgaaaattgtgtatggcgtcgttttaagaaaattcaagtaagtacatgcatttttgatatattaagttatctttatcatttaataagaaaggaatatacagttatatacggaggcaccctacttatgactttaaaactcccaattagtagtcgctaagtcctaattaggagattttaaagtcttaaataaaacactaagtcctaattaggagcattggaagtcttcaaaaaaaataactaagtcgtaattagtttttctgatagaacattatgaattggcaccgtatatgagtatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgagcccgtgcgttagttattgtgactgtataaagaaaaaacataacaaaacatcactataaaaatgcataagaaagcaactgaaatcggaaatgtttaatattttcttaaagcatgaccaccagttcatcagataggtaaacatcggtttagaataattttatctgc
gi|5 : gtctgttggggtcacatatgtaaccaaagcacatttgtaacttaaaggacacatatgttactaaaggggcatatttgtaactattgtaacccgacatagcacaaatgtaataaatcggacacatatgtaaccaaaaccctatatgtaactgaaactgatatatatgtaactactaccataccatatttttgacgaacaacatgtaacatctcaatcacggtgtttatccgacgaaaattgtgtatggcgtcgttttaagaaaattcaagtaagtacatgcatttttgatatattaagttatctttatcatttaataagaaaggaatatacagttatatacggaggcaccctacttatgactttaaaactcccaattagtagtcgctaagtcctaattaggagattttaaagtcttaaataaaacactaagtcctaattaggagcattggaagtcttcaaaaaaaataactaagtcgtaattagtttttctgatagaacattatgaattggcaccgtatatgagtatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATA---TGTGCAATATTTCAATTATGTGGCAAAATCGCGAAATG-TTTCTGTTCCGATTTACGTGAAGTCATGACGTCACTTTTAGAACCTAGAAAAAATGTCCAATTCGAACATATTTACAATCAAATTGTTGAGATTAATTAAAATATTAGCCGAAAAATAAAGGACTAAAGTTATTTTCTGAGAGACCAATACGCCAGCAAATACTAAGTGCACTTTAAGTCAAGCATACTGCTTCAACAAGCGAATATTTAAGTAATATTAAGCCTTAATAAGG-TCG-TTTTGTATATTTTTATGGTTGAATAATTACCTCTAGCACACGTCTTACGATGCACTTTAACTATATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTAGTCCGGATCACAACCTAATACAATATATTGAATTACGAAAAATAATAAGTGTCGGGTTAGCTCTTTTGGTCACTATACATACACTAGATTAACAATATCAGTATTAACAACATATATTGCAGACTATCACAACTACATATTACAATCGCAAAGTAACGTGCACACAGTAAAATGT----TA---TTTGTCAAAATGCTAGCATGTTTCGTGGTAG---TTACATATATGCCCA-TTTCAGTTACAT---------ATAAGATTAT---------AGTTACAAT-----TGTGTCCGATTTGATACAT-TTGTGCGCTGTC---GTT-TTT-T-TTTCTA-AATAGTTAAAAATGTGCCCTTT-------T-AGTTACATATGTGTCCTTTAAGTTACATATGTGC----TTTA---GTTACATATGTGACCC
gi|6 : atatttcagattgtgacacttctggggcattcttctaggatgctttacatatgatggtatttgtattgtaacctacgtatgttgTCATATCCATA---TGTGCAATATTTCATTTATGTTGCAAAATCGCGAAATGCTTTCTGTTCCGATTTACGTGAAGTCATGACGTCAATTTTAGAACCTAGAAAAAATGTCCAATGCGAAAATATTTACGATCAAATTGTTGAGATTAATTAAAATTTTAGCCGAAAAATAAAGGGCTAAAGTTATTTTCTGAGAGACCTATACGCCAGCAAATACAAAGTGCACTTTAAGTCAAGCATACTGCTTCAACAAGCGAATATTTAAGTAATATTAAGCCTTAATAGGG-TCG-TTTTGAATATTTTCATGGTTGAATAATTACCTCTAGCACACGTCTTACTATGCACTTAAACTACATATTTCATACTAATGTTAAAGAAAGTTCAACATGTAGTCCGGATCACAACCTAA--------GGTGAATTACAAAATATAATGAGT-TCGGGTTAGCTCTTTT-GTCAGTATACATACACTAGATTAACAATATCGGTATTAACAACACATATTTGAGACTATCACAACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATACA---TG---TTTGTCAAAATTCTAGCATGTTTCATGGTAG---TTACATAAATGCACA-TTTCAGTTACAT---------ATAAGATTTA---------AGTTACAT------TGTGTCCTTTTAGTTACAT-ATGTGC-----------T-T--------------TAGTTACATATGTGACC-----------------CATATGTA---TTTAAAGCACATATGTAA----CTTAAAGGACACATATGTAACt
gi|6 : gAG---TTACATTTGTGCCCGATTT--GTTACATTGGTGCCCTGTTGGGTTTTTTTCTAAATAGTTACAAA-----TGTGCCCTTTTAGTTACAT-ATGTGTCC-------------------TTTA----AGTTACATATGTGC---TT-------T-AAATACATATGGGTC---------ACATATGTAA----CTAA---AGCACATATGTAACtaaaagggcacatttgtaactatttagaaaaaaacccaacagggcaccaatgtaacaaatcgggcacaaatgtaactcaaatc
gi|6 : gtcatatccatatgtgcaatatttcatttatgttgcaaaatcgcgaaatgctttctgttccgatttacgtgaagtcatgacgtcaattttagaacctagaaaaaatgtccaatgcgaaaatatttacgatcaaattgttgagattaattaaaattttagccgaaaaataaagggctaaagttattttctgagagacctatacgccagcaaatacaaagtgcactttaagtcaagcatactgcttcaacaagcgaatatttaagtaatattaagccttaatagggtcgttttgaatattttcatggttgaataattacctctagcacacgtcttactatgcacttaaactacatatttcatactaatgttaaagaaagttcaacatgtagtccggatcacaacctaaggtgaattacaaaatataatgagttcgggttagctcttttgtcagtatacatacactagattaacaatatcggtattaacaacacatatttgagactatcacaactacatattacaatcgcaaagtatagtgcacacagtaaaatacatgtttgtcaaaattctagcatgtttcatggtagttacataaatgcacatttcagttacatataagatttaagttacattgtgtccttttaGATTTG---------AGTTACATT-----TGTGCCCGATTTGTTACAT-TGGTGCCCTGTT---G-GGTTT-T-TTTCTA-AATAGTTACAAATGTGCCCTTT-------T-AGTTACATATGTGTCCTTTAAGTTACATATGTGC----TTTA---AATACATATGcaaatc
gi|7 : gtcatatccatatgtgcaatatttcatttatgttgcaaaatcgcgaaatgctttctgttccgatttacgtgaagtcatgacgtcaattttagaacctagaaaaaatgtccaatgcgaaaatatttacgatcaaattgttgagattaattaaaattttagccgaaaaataaagggctaaagttattttctgagagacctatacgccagcaaatacaaagtgcactttaagtcaagcatactgcttcaacaagcgaatatttaagtaatattaagccttaatagggtcgttttgaatattttcatggttgaataattacctctagcacacgtcttactatgcacttaaactacatatttcatactaatgttaaagaaagttcaacatgtagtccggatcacaacctaaggtgaattacaaaatataatgagttcgggttagctcttttgtcagtatacatacactagattaacaatatcggtattaacaacacatatttgagactatcacaactacatattacaatcgcaaagtatagtgcacacagtaaaatacatgtttgtcaaaattctagcatgtttcatggtagttacataaatgcacatttcagttacatataagatttaagttacattgtgtccttttagttacatatgtgctttagttacatatgtgaccATAATGAAACATCACTATAAAAGTGCATATGGTAGCATCTGAAATCGGAAATGTTTAATATTTCCTTAAAGCATGGCCACCAGGTCATCAGATAGGTAAACATCGGTTTAGAATATGTTTATCTGCTTTTTA--ATCTAA---ATATTTATCAAATTCATA---
gi|7 : TGAGAAACCAATACACCAGCAAGTATAAAGTGCACTTTAAGTCAAGCATACTGCTTGAACAAGCGAATATATAAGTAATATTTAGCCTTAATAGGGGTCG-TTTTGAATATTTTCATAGTTGAATAATTGCCTCTAGCACACGTCTTACTATGCACTTATACAACATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTGGTCCGGATCACAACCTAAGACAACACGGTGAATTACGAAAAATAATGAGTGTCGGGTTAACTCTTTTGGTCAGTGTACATACACTAG--------------------------ATACTGGAGAGTATCACAACTACATATTACAATCGCAAAGCAAAGTGCACACAGTAAAATACATGTTG---TTTGTCAAAATTCTAGCATGTTTCGTGGTTG---TTACATTTGTGCCT--TTTTAATTACAT---------ATgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgtgttaatatgtttaaaaatataatgaacaaaaaatgtatgtaaatgagaaaccaatacaccagcaagtataaagtgcactttaagtcaagcatactgcttgaacaagcgaatatataagtaatatttagccttaataggggtcgttttgaatattttcatagttgaataattgcctctagcacacgtcttactatgcacttatacaacatatttcatactaatgttaaagaaagttcagcatgtggtccggatcacaacctaagacaacacggtgaattacgaaaaataatgagtgtcgggttaactcttttggtcagtgtacatacactagatactggagagtatcacaactacatattacaatcgcaaagcaaagtgcacacagtaaaatacatgttgtttgtcaaaattctagcatgtttcgtggttgttacatttgtgcctttttaattacatatgtgaccccagcagacgtc
gi|8 : ataatgaaacatcactataaaagtgcatatggtagcatctgaaatcggaaatgtttaatatttccttaaagcatggccaccaggtcatcagataggtaaacatcggtttagaatatgtttatctgctttttaatctaaatatttatcaaattcatagttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgtgttaatatgtttaaaaatataatgaacaaaaaatgtatgtaaaTAG---TTACAAACATGCCC--TTTTAGTTACAC---------ATGTGACCCT---------A---ACACA-----CGTGgtgaccccagcagacgtc
gi|8 : at---TG---TTCGTAAAAAATATGGTAAG----GTAGTAG---TTACATATATGCCTG-TTTCAGTTACAT---------ATAGGATTTT----------------------------------CGTTACAT-TTGTACTTTGTC---G-T-TTT-T-TTTCTA-AATAGTTACAAACATGCCCTTT-------T-AGTTACACATGTGACCCTtttagaaaaaaaacgacaaagtacaaatgtaacgaaaatcctatatgtaactgaaacaggcatatatgtaactactaccttaccatattttttacgaacaacatgtaacatctctatcgcggtgtttatccagcgaaaattgtgtatggcgtcgttttaagaaaataccagttagcacatgcattttttatatattatgttatctttatcatttaataagaaaggaatactgagttatatacggaggcgccctacttatgactttaaaactcccaattagtagacgcttatccctaattaggacactttaaagtcttaaataaaaaaaaacttagtccttataaggatattttaaagttttaaataaatttgaagtcttcaataaaataactaagtcctaattagtttttctgatagactataatgaattggcaccgtacgctcccgtagttgtgtataatttgcacccagttgaaccacttgaaacactgagtgatttccctttgttttgtatatatcgtttgtacattgtttcaaaggaaccactgaaattgatattgtatattataaagactatattttaataaaaacgtaaaaattactcatccgcgtcgattttgggctaaatgcttgatttgtacgtgcagctcgagcctgtgcgttagttatagtaactgtat
gi|8 : atcacgtgtgttCAAAGGAACCACTGA---AAT-----TGATATTGTATATTATAAAGACTATAT-TTTAATAAAAACGT-----AAAAATTACTCATCCGCGTCGATTTT-GG------GCTA-----------AATGCTTGATTTGTACGTGCAGCTCGAGCCTGTGCGTTAGTTATAGTAACTGTA----------Tacatgtaacatctctatcgcggtgtttatccagcgaaaattgtgtatggcgtcgttttaagaaaataccagttagcacatgcattttttatatattatgttatctttatcatttaataagaaaggaatactgagttatatacggaggcgccctacttatgactttaaaactcccaattagtagacgcttatccctaattaggacactttaaagtcttaaataaaaaaaaacttagtccttataaggatattttaaagttttaaataaatttgaagtcttcaataaaataactaagtcctaattagtttttctgatagactataatgaattggcaccgtacgctcccgtagttgtgtataatttgcacccagttgaaccacttgaaacactgagtgatttccctttgttttgtatatatcgtttgtacattgtttcaaaggaaccactgaaattgatattgtatattataaagactatattttaataaaaacgtaaaaattactcatccgcgtcgattttgggctaaatgcttgatttgtacgtgcagctcgagcctgtgcgttagttatagtaactgtat
gi|9 : atcacgtgtgttagggtcacatgtgtaactaaaagggcatgtttgtaactatttagaaaaaaaacgacaaagtacaaatgtaacgaaaatcctatatgtaactgaaacaggcatatatgtaactactaccttaccatattttttacgaacaacatgtaacatctctatcgcggtgtttatccagcgaaaattgtgtatggcgtcgttttaagaaaataccagttagcacatgcattttttatatattatgttatctttatcatttaataagaaaggaatactgagttatatacggaggcgccctacttatgactttaaaactcccaattagtagacgcttatccctaattaggacactttaaagtcttaaataaaaaaaaacttagtccttataaggatattttaaagttttaaataaatttgaagtcttcaataaaataactaagtcctaattagtttttctgatagactataatgaattggcaccgtacgctcccgtagttgtgtataatttgcacccagttgaaccacttgaaacactgagtgatttccctttgttttgtatatatcgtttgtacattgtttTCTGCTCCGATTTACGTGAAGTCATGACGTCACTTTTAGAATGTAGAAAAAATGTCAAATTCGAAAATATTTACAATCAAATTGTTGAAATTGATTATATTTTTAGCCGAAAAATAAAGGTCT---GTTATTTTCTAATAGACCAATACGCCAGCGATTACAAAGTGCACTTTAAGTCAAGCATATTGCCTCAACAAGCGAATATTTAAGTAATATTAAGCCATAATAGGG-TCG-TTGTGAATATTTTCATGGTTGAATAATTACCTTTAGTACACGTCTTACTATGCACTTAAACTAAATATTTCATACTAATATTAAAGAAAGTTCAGCATGTAGTCCGGATCACA-------ACAACACGGTGAATTACGAAAAA-AATGAGTGTCGGGTTAACTTTTTTGGTCAGTATACATACACTAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATCACAGCTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCATGTTG---TTCGTCAAAAATCTAGCATGTTTCGTGGTAG---TTACATATATGCCCG-TTTCAGTTACAT---------ATAAGATTTT---------AGTTACATT-----TGTGTCCAATTTGTTACAT-TTGTGCCCTGTC---G-T-TTT-T-TTTCTA-AATAGTTACAAATGTGCCCTTT-------T-AGTTACATATGTGTCTTTTAAGTTACGTATGTGC----TTTA---GTTACATATGTGACCC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GCCAGTCGACAAATGTTCTGAATAAATGTTCCTTACTAGATTGTGATCAACATCATCGTAATAAAAAAGCAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTCATCATCACCATGGTTATCGTCATTTGCTTCTAAAGACGTTCTTAACATCCCATGTTTTGTTTTTTATTCTGAATTCTACATAAAAGTCGCTCTATATCCAATACTACATCTTTCCTGCAACTGACAACATTTTAATTTACTCATATTTCTATTCTCTATG
Unaligned ( gi|17 ): AGGCGCTGTACTTATGACTTTAAAACTCACAATTAGTAGACGCTAAGTCAAAATTAGGAGCTTTTGAAGTCTTAAATAAAAAACTTAGTCCTAATAAGGGTATATCTAAGCCTTAAATAAAATACTAAGTCCTTATTAGAAGAGTTGGATGTCTTTAATAAAATCACTAAGTCCTAATTAGTTTTTATGATAGAACATTATGAAT
Alignments
lowQualScore : 222 33333 1 22222 222222 44444444444 2222222222 2222 1 11 111 111 111 111 1111 1111111111 111111
lowQualScore : 6 333 33333 3 3 0 55555 8 333333 77777777777 2 9999999999 1111 0 6 1 6 0 33 777 111 2 2 1 1 1 1 0 0 6 6 4 0 1 000 000 1 9999 444 2 999999999 0 1111111111 000000 2 55 666 4 2 2 2 2 7777777 2 1 5555 444
lowQualScore : . ... ..... . . . ..... . ...... ........... . .......... .... . . . . . .. ... ... . . . . . . . . . . . . . ... ... . .... ... . ......... . .......... ...... . .. ... . . . . . ....... . . .... ...
lowQualScore : 7 333 33333 2 2 0 00000 0 000000 55555555555 5 2222222222 2222 0 4 4 0 8 88 555 777 0 5 0 4 4 4 8 7 7 7 3 7 9 888 888 5 3333 444 5 444444444 7 4444444444 666666 2 77 111 4 1 1 1 2 2222222 2 8 3333 444
consensus : CAAAGGAACCACTGA---AAT-----TGATATTGTATATTATAAAGACTATAT-TTTAATAAAAACGT-----AAAAATCACTCATCCGCGTCGGTTTT-GG------GCTA-----------AATGCTTGATTTGTACGTGCAGCTCGAGCCCGTGCGTTAGTTATAGTGACTGTA----------TAAAGAA----AA-AACATAACAAAACATCACTATAAAAGTGCATAAGACAGCAGCTGAAATCGGAAATGTTTAATATTTCCTTAAAGCATGGCCACCAGTTCATCAGATAGGTAAACATCGGTTTAGAATAATTTTATCTGCTTTTTA--TTCTAA---ATATTAATCAAATCCATA---TGTGCAATATTTCAATTATGTTGCAAAATCGCGAAACGCTTTCTGCTCCGATTTACGTGAAGTCATGACGTCACTTTTAGAACCTAGAAAAAATGTCCAATTCGAAAATATTTACGATCAAATTGTTGAGATTAATTATAATTTTAGCCGAAAAATAAAGGGCTAAAGTTATTTTCTGAGAGACCAATACGCCAGCGAATACAAAGTGCACTTTAAGTCAAGCATACTGCTTCAACAAGCGAATATTTAAGTAATATTAAGCCTTAATAGGG-TCG-TTTTGAATATTTTCATGGTTGAATAATTACCTCTAGCACACGTCTTACTATGCACTTAAACTACATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTAGTCCGGATCACAACCTAAGACAACACGGTGAATTACGAAAAATAATGAGTGTCGGGTTAGCTCTTTTGGTCAGTATACATACACTAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATCACAACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TG---TTCGTCAAAAATCTGGCATGTTTCGTGGTAG---TTACATATATGCCCG-TTTCAGTTACAT---------ATAGGATTTT---------GGTTACATA-----TGTGTCCGATTTGTTACAT-TTGTGCCCTGTC---G-T-TTT-T-TTTCTA-AATAGTTACAAATGTGCCCTTT-------T-AGTTACATATGTGTCCTTTNAGTTACATATGTGC----TTTA---GTTACATATGTGACCC
Reference ( family-968 ) : CAAAGGAACCACTGA---AAT-----TGATATTGTATATTATAAAGACTATAT-TTTAATAAAAACGT-----AAAAATCACTCATCCGCGTCGGTTTT-GG------GCTA-----------AATGCTTGATTTGTACGTGCAGCTCGAGCCCGTGCGTTAGTTATAGTGACTGTA----------TAAAGAA----AA-AACATAACAAAACATCACTATAAAAGTGCATAAGACAGCAGCTGAAATCGGAAATGTTTAATATTTCCTTAAAGCATGGCCACCAGTTCATCAGATAGGTAAACATCGGTTTAGAATAATTTTATCTGCTTTTTA--TTCTAA---ATATTAATCAAATCCATA---TGTGCAATATTTCAATTATGTTGCAAAATCGCGAAACGCTTTCTGCTCCGATTTACGTGAAGTCATGACGTCACTTTTAGAACCTAGAAAAAATGTCCAATTCGAAAATATTTACGATCAAATTGTTGAGATTAATTATAATTTTAGCCGAAAAATAAAGGGCTAAAGTTATTTTCTGAGAGACCAATACGCCAGCGAATACAAAGTGCACTTTAAGTCAAGCATACTGCTTCAACAAGCGAATATTTAAGTAATATTAAGCCTTAATAGGG-TCG-TTTTGAATATTTTCATGGTTGAATAATTACCTCTAGCACACGTCTTACTATGCACTTAAACTACATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTAGTCCGGATCACAACCTAAGACAACACGGTGAATTACGAAAAATAATGAGTGTCGGGTTAGCTCTTTTGGTCAGTATACATACACTAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATCACAACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TG---TTCGTCAAAAATCTGGCATGTTTCGTGGTAG---TTACATATATGCCCG-TTTCAGTTACAT---------ATAGGATTTT---------GGTTACATA-----TGTGTCCGATTTGTTACAT-TTGTGCCCTGTC---G-T-TTT-T-TTTCTA-AATAGTTACAAATGTGCCCTTT-------T-AGTTACATATGTGTCCTTTNAGTTACATATGTGC----TTTA---GTTACATATGTGACCC
gi|1 : CAATGGAAC-ACAGACGCAATCTACATAATTTTTTATAT-ATAG---TTATAT-ATTTATAAAATCTTTTTTTCAAAATCGCTGATCTGCGTCGGTTTTCGGTAAAATGCTACATTTCGGTAAAATGCTTGATTTGTACGTGCAGCTCGA-CCCTTTC--T--TTACAGTGACTGTA----------TAAAGAA----AA-AACATAATAAAACATCACTATAAAAGTGCATATGACAGCAGCTGAAATCGGAAATGTTTTTAATTTCCTTAAAGCATGGTCACCAGTTCATCAGATAGGTAAATATCGGTTTAGAATAATTTTATCTGCTTTTTAAATATTAATTAATATTAATCAAATCCATA---TGTACAATATTTCAATTATGTTGCAAAATCGCGAAATGCTTTCTGCTCCAATTTACCTGAAGTCATGCCGTCTCTTTTAGAACCTAGAAAAAATGTCTAATTCGAAAATATTTACGATCAAATTGTTGAGATTAATTATAATTTTAGCCGAAAAATAAAGGGCTAAAGTTATTTTCTGAGAGACCAATACGCCAGCAAATACAAAGTGCACTTTAAGTCAAGCATATTGCTTCAACAAGCGAGTATTTAAGTAATAATAAGCCTTAATAGGG-TCG-TTTTGAATAATTTCATGGTTGAATAATTCCTTCTAGCACACGTCTTACTATGCACTTAAACTACATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTAATCCGGATCACAACCTAAGACAACACGGTGAATTACGAAAAATAATGAGTGTCGGGTTAGTTCTTTTGGTCAGTATACATATACTACATTAACAATATCAGTATTTACAACATATATTGGAGACTATCATAACTACATATTGCAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TG---TTCGTCAAAAAGCTAGCATGTTTCGTGGTAG---TTACATATATGCCCG-TTTCAGTTACAT---------ATACGATTTT---------AGTTACATT-----TGTGTCCGATTTGTTACAT-TTGTGCCCTGTC---A-T-TTT-T-TTTCTA-AATAGTTATAAATGTGCACTTT-------T-AGTTACATATGTGTCCTTTTAGTTACATATGTGC----CTTA---GTTACATATGTGACCC
gi|10 : ---TG---TTCTTCAAAAATATGGTATG----GTAGTAA---TTAGATATATGCCTA-TTTCAGCTACAT---------ATAGGATTTT---------GGTTACATA-----TGTGTCAGATTTATTACAT-TTGT-------------C-TTT-T-TTTCTA-AATAGTTACAAATATGCCCTTT-------T-AGTAACATGTGTGTCTTTTTAGTTACATATGTGC----TTTA---GTT
gi|10 : GATATTGTATATTATAAAGACTCTATATTCAATAAACACGG-----AAAAATCACTCATCCAC----GTTAT-GG------GCccatgtaacatctcaatcacgttgtttatccgacgaatattgtgaatggcgtcattttaagaaaattcaagtaagtacatgcattttttttatatattaggttatctttatcatttaataagaaaggaatacacagttatatacagaggcgccctacttatgactttaaaattctcaattagcagacgcttagtcttaataaggagattttaaagtcttaaataaaaaaaaacttagtcctaataaggatattttaaagtctttaataaaactcgaagtcctaataaggagaattggaagtcttcaataaaataagtcctacttagtttttctgataaaacattttgatttggcaccgtatatgattatatgtttactatatatgtataatgaccaaaacagcttataatgaaattgtgtatacgactgtgacagacgatattgtatattataaagactctatattcaataaacacggaaaaatcactcatccacgttatgggc
gi|11 : aactaaagcacatatgtaactaaaaagacacacatgttactaaaagggcatatttgtaactatttagaaaaaaagacaaatgtaataaatctgacacatatgtaaccaaaatcctatatgtagctgaaataggcatatatctaattactaccataccatatttttgaagaacaccatgtaacatctcaatcacgttgtttatccgacgaatattgtgaatggcgtcattttaagaaaattcaagtaagtacatgcattttttttatatattaggttatctttatcatttaataagaaaggaatacacagttatatacagaggcgccctacttatgactttaaaattctcaattagcagacgcttagtcttaataaggagattttaaagtcttaaataaaaaaaaacttagtcctaataaggatattttaaagtctttaataaaactcgaagtcctaataaggagaattggaagtcttcaataaaataagtcctacttagtttttctgataaaacattttgatttggcaccgtatatgattatatgtttactatatatgtataatgaccaaaacagcttataatgaaattgtgtatacgactgtgacagacTACA---TG---TTCGTCAAAAATATGGTATG----GTAGTAG---TTACATATATGCCCG-TTTCAGTTACAT---------ATAAGATTTT---------G-TTACATA-----TGTGTCCGATTTGTTACAT-TTATGCAATGTCT--G-T-TTT-TATTTCTA-AATAGTTACAAATATGTCTTTT-------T-AGTTACATATGTTTCCTTTTAGTCACATATGTGC----TTTA---GTTACATATGTGACCC
gi|12 : gcttcattttaagctttaaattttgtagttgtaaaactcacggataattcattattgttctatattaattagttttcaatatccgcgtgtgtgtgcgtgtgttg-TTT-T-TTTTTA---TAGTTACAAATATGCCCTTT-------T-AGTTACATATGTGTCCTTTAAGTTACATATTTGC----TTTA---GTTACATTTGTGACCacatctcaatgacggtgtttatccggcgaaaactaaagtaagtacatacattttttatatattaggttatctttatcatttaataagaaaggaatacacatttatatacggaggcgccctactcatgactttaaaactcccaattagtagacgctaagtcctagttaggagattttaaagtcttaaataaaaaaaactttgtcctaattaggatattttaaagtcttaaataaaacactaagtcctaataagcagacttggaagtcttcaataaaaataactaagccta
gi|13 : gcaagtcgacaaacgttccgcataaaggtcccttaatagatcgtgatcaaaatcatcgtaataaaaaagcaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttttatcatcatcatggttattgtcatttgctgagacgttcttaacatcccttgatttttttattctacatgtacataaaagtcgttctagatccaatactacgtctttcctccagccagcatcattctaatttaatcatatttctattctctatgaaatttcaccagtattatgtaaaaatcagttttcgttaatgtgtaaatctgttaACTACATATTTCATACTAATGTTAAATGAACTTCAGCATGTAGTCCGGATCACAACCTTAGACAACACGGTGAATTATAAAAAATAATGAGTGTA-----AGCTCTTTTGGTCAGTATACGTACACTAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATC---ACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TGTTATTCGTCAAAAATCTATCATGTTTCGTGGTAG---TTACATAAATGCCCG-TTTCAGTTACAT---------ATAAGAT--------------------------TGTGTCCGATTTGTTACAT-TTGTGCCCTGTC---G-T-TTT-C-TTTCTA-AATAGTTACAAATGTACCCATT-------T-AGTTACATATGTGTCCTTTAAGTTTCATATGTGC----TTTA---GTTACATATTTGACCCttgttacat
gi|15 : ---TG---TTCGTC--AAATATGGTATG----ACAGTTG---TTACATATATGCCTG-TTTCAGTTACAT---------ATAGGATATT---------GGTTACATA-----TGTGTCCGA------------TGTGCTATGTCGGGG-T-TTT-T-TTCCTA-AAAAGTTACAAATATGGCCTTT-------T-AGTCACATATGTGTCCTTTTAGTTACTTATGTGC----TTTA---GTTACATATGTGACCCcaacacacgttatatgtttagttgaaacacaatacaatataatatattta
gi|16 : tgttg---TG---TTCGTCAAAAATATGATATG----GTAGTAG---TTACATATATGCCCG-TTCCAGTTATAT---------ATAGGATTTC---------GGTTACATA-----GGTGTCCGATTTGTTACTT-TTGTGCCATGTC---G-T-TTT-T-TT--TA-AATAGTTACAAATATGCCCTTT-------T-TGTTACATATGTGTCCATTTAGTTACATATGTGC----TTTA---GTTACATATGTGACCCacatgtatcacgttgtttatcgggcgaaaattgtgtatgccgttgttttaagaaaaaatcatgtaagtacaagtatttttgatatattaggttatctatatcatttaataggaaatgaatacacagtta
gi|18 : tttattaattactgttagttttccattttataagttcacactttaatatacaagggacgtctgttgAAATCACACATCCGTGTCGGATTT-GG------GCTA-----------AATGCTT-ATTTGTACGTGCAGCTCGAGCCCGTGCGTTAGTAATAGTGACTGTA----------Tggtaacatctcaatcacggtgttt
gi|19 : ttttgtgatgattgtttgacatattaagaatcaaacagtctgacaagataatgatatatatataatctttttttTTGTTACAT-TGTTGCTATGTT---GGT-TTT-T-TTTCTA-AATAGTTACAAATATTCCCTTTAAGCTTTT-AGTAACGTATGTCTCCTTTTAGTTACATATGTGC----TTTA---GTTACATATGTGACCC
gi|2 : gtttgtttTGGTAGAAATTACAAACATGCCTG-TTTAAGTTACAT---------GTAGGATTTT---------GGTTACATA-----TATGTCCGATTTATTACAT-TTGTGCTATGTC---G-G-TTT-T-TTTCTA-AATAGTTACAAATATGCCCTTT-------T-AGTAATATATGTGTCCTTTTGGTTACATATGTAC----TTTA---GTTACATATGTGACCC
gi|2 : cgtttgttgCAT---------ACACAATTTT---------GGCCGGATAAACACCGTGACTGAGATGTTACATGTTGTGCATGATG---G-T-ATG-G-T----A-GA-AATTACAAACATGCCTGTT-------TAAGTTACATGTAGG--ATTTTGGTTACATATATGTCCGATTTA----TTACATTTGTGtaccatcatgcacaacatgtaacatctcagtcacggtgtttatccggccaaaattgtgtatggcgtcgttttaagaaaattcaagtgagtacatgcatttttgatatattaggttatctttatcatttagttagaaaggaatacacagttatatacggaagcaccctgcttatgactttaaaactcccattaaatagacgctaagtcctaattaggagatttttaaagtcttaaattaacaaacttcgtcctacttaggatattttaaagtcttaaataaaacactaagtcctattaaggtgaatcggaagtcttcattaaaataagtcctaattagtttttttctgatagaacactatgaattggcaccgtatatgattatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgagcccgtgcgttagttatagtgactgtaagagaacgtataaataacataaataaaataacaaaatatcactataaaagtgcataaaacagcagctgaaatcggaaatgtttattttccttaaagcatgaccaccagttcatcagataggaaaacatcggtttagagtaattttatctgctttttattctaaatattaatcaaatccatatgtgcaatattttaattatgttcgaaatcggga
gi|2 : cgtttgttggggtcacatatgtaactaaagtacatatgtaaccaaaaggacacatatattactaaaagggcatatttgtaactatttagaaaaaaaccgacatagCTCGAGCCCGTGCGTTAGTTATAGTGACTGTAAGAGAACGTATAAATAACATAAATAAAATAACAAAATATCACTATAAAAGTGCATAAAACAGCAGCTGAAATCGGAAATGTTTA-T-TTTCCTTAAAGCATGACCACCAGTTCATCAGATAGGAAAACATCGGTTTAGAGTAATTTTATCTGCTTTTTA--TTCTAA---ATATTAATCAAATCCATA---TGTGCAATATTTTAATTATGTT-CGAAATCGGGAgcgtcgttttaagaaaattcaagtgagtacatgcatttttgatatattaggttatctttatcatttagttagaaaggaatacacagttatatacggaagcaccctgcttatgactttaaaactcccattaaatagacgctaagtcctaattaggagatttttaaagtcttaaattaacaaacttcgtcctacttaggatattttaaagtcttaaataaaacactaagtcctattaaggtgaatcggaagtcttcattaaaataagtcctaattagtttttttctgatagaacactatgaattggcaccgtatatgattatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgagcccgtgcgttagttatagtgactgtaagagaacgtataaataacataaataaaataacaaaatatcactataaaagtgcataaaacagcagctgaaatcggaaatgtttattttccttaaagcatgaccaccagttcatcagataggaaaacatcggtttagagtaattttatctgctttttattctaaatattaatcaaatccatatgtgcaatattttaattatgttcgaaatcggga
gi|20 : cgtttgttggggtcacatatgtaactaaagtacatatgtaaccaaaaggacacatatattactaaaagggcatatttgtaactatttagaaaaaaaccgacatagcacaaatgtaataaatcggacatatatgtaaccaaaatcctacatgtaacttaaacaggcatgtttgtaatttctaccataccatcatgcacaacatgtaacatctcagtcacggtgtttatccggccaaaattgtgtatggcgtcgttttaagaaaattcaagtgagtacatgcatttttgatatattaggttatctttatcatttagttagaaaggaatacacagttatatacggaagcaccctgcttatgactttaaaactcccattaaatagacgctaagtcctaattaggagatttttaaagtcttaaattaacaaacttcgtcctacttaggatattttaaagtcttaaataaaacactaagtcctattaaggtgaatcggaagtcttcattaaaataagtcctaattagtttttttctgatagaacactatgaattggcaccgtatatgattatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTACATT-----TGTGTCCGATTTGTTACAT-TTGTGCCCTGTC---G-T-TTTTT-TTTCTA-AATAGTTACAAATGTGCCCTTT-------T-AGTTACATATGTGCCCTTTTAGTTACATATGTG
gi|21 : GTGTCCGATTTGTTACAT-TTGTGCCCTATC---G-T-TTT-T-TTacccca
gi|3 : ggcaactttccagtaatctgtAAAGGAACCACTGA---AAT-----TGATATTGTATATTATAAAGACTATAT-TTTAATAAAAACGT-----AAAAATTACTCATCCGCGTCGATTTT-GG------GCTA-----------AATGCTTGATTTGTACGTGCAGCTCGAGCCTGTGCGTTAGTTATAGTAACTGTA----------TAAAGAA----AA-AGCATAA-AAAACATCACTATAAAAGTGCATAAGACAGCAGCTGAAATCGGAAATGTTCAATATTTCCTTGAAGCATGGCCACCAGTTCATCAGATAGGTAAACATCGGTTTAGAATAATTTTTTCTGCTTTTTA--TTCTAA---ATATTAATCAAATCCATAATATGTGCAATATTTCAATTATGTTGCAAAATTGCAAAACACTTTCTGCTCGAATTTACGTGAAGTCATGACGTACCTTTTAGAACCTAGAACACATGTCCAATTCGAAAATATTAAGGATCAAATTGTTGAGATTAATTATATTTTAAGCCGAAAAATAAAGGATTAAAGTTATTTCCTGAGATACCAATATGCCAGCGAATACAAAGTGCACTTCAAGTCAAGCATATTGCTTCAACAAGCGAATATTTAACTAAT-TTTAGCCTTAATAGGG-TCGTTTTTGGATATTTTCATGGTTTAATAATTACCTCTAGTACACGTCTTACTATGCACTTAAACTACATATATCATACTAATGTTTAAGAAATTTTAGCATGTTGTCCAGATCACAACCTAAGACAACACTGTGAATTACGAAAAATATTGAGTGTCGGGTTAGCTCTTT-------------TACACAAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATCACAACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TGTTCTTCGTCAAAAATCCAGCATGTTTCGTGATAG---TTACATATATGTCCG-TTTCAGTACCAT---------ATAAGATTTT---------AGTTACATT-----TGT
gi|4 : ---TG---TTCGTCAAAAATATGGTATG----GTAGTAG---TTACATATATATCAG-TTTCAGTTACAT---------ATAGGGTTTT---------GGTTACATA-----TGTGTCCGATTTATTACAT-TTGTGCTATGTC---G-G-GT--------TACAATAGTTACAAATATGCCCCTT-------T-AGTAACATATGTGTCCTTTAAGTTACAAATGTGC----TTTG---GTTACATATGTGACCC
gi|4 : gtctgttgCTCGAGCCCGTGCGTTAGTTATTGTGACTGTA----------TAAAGAA----AA-AACATAACAAAACATCACTATAAAAATGCATAAGAAAGCAACTGAAATCGGAAATGTTTAATATTTTCTTAAAGCATGACCACCAGTTCATCAGATAGGTAAACATCGGTTTAGAATAATTTTATCTGCacatgtaacatctcaatcacggtgtttatccgacgaaaattgtgtatggcgtcgttttaagaaaattcaagtaagtacatgcatttttgatatattaagttatctttatcatttaataagaaaggaatatacagttatatacggaggcaccctacttatgactttaaaactcccaattagtagtcgctaagtcctaattaggagattttaaagtcttaaataaaacactaagtcctaattaggagcattggaagtcttcaaaaaaaataactaagtcgtaattagtttttctgatagaacattatgaattggcaccgtatatgagtatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgagcccgtgcgttagttattgtgactgtataaagaaaaaacataacaaaacatcactataaaaatgcataagaaagcaactgaaatcggaaatgtttaatattttcttaaagcatgaccaccagttcatcagataggtaaacatcggtttagaataattttatctgc
gi|5 : gtctgttggggtcacatatgtaaccaaagcacatttgtaacttaaaggacacatatgttactaaaggggcatatttgtaactattgtaacccgacatagcacaaatgtaataaatcggacacatatgtaaccaaaaccctatatgtaactgaaactgatatatatgtaactactaccataccatatttttgacgaacaacatgtaacatctcaatcacggtgtttatccgacgaaaattgtgtatggcgtcgttttaagaaaattcaagtaagtacatgcatttttgatatattaagttatctttatcatttaataagaaaggaatatacagttatatacggaggcaccctacttatgactttaaaactcccaattagtagtcgctaagtcctaattaggagattttaaagtcttaaataaaacactaagtcctaattaggagcattggaagtcttcaaaaaaaataactaagtcgtaattagtttttctgatagaacattatgaattggcaccgtatatgagtatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATA---TGTGCAATATTTCAATTATGTGGCAAAATCGCGAAATG-TTTCTGTTCCGATTTACGTGAAGTCATGACGTCACTTTTAGAACCTAGAAAAAATGTCCAATTCGAACATATTTACAATCAAATTGTTGAGATTAATTAAAATATTAGCCGAAAAATAAAGGACTAAAGTTATTTTCTGAGAGACCAATACGCCAGCAAATACTAAGTGCACTTTAAGTCAAGCATACTGCTTCAACAAGCGAATATTTAAGTAATATTAAGCCTTAATAAGG-TCG-TTTTGTATATTTTTATGGTTGAATAATTACCTCTAGCACACGTCTTACGATGCACTTTAACTATATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTAGTCCGGATCACAACCTAATACAATATATTGAATTACGAAAAATAATAAGTGTCGGGTTAGCTCTTTTGGTCACTATACATACACTAGATTAACAATATCAGTATTAACAACATATATTGCAGACTATCACAACTACATATTACAATCGCAAAGTAACGTGCACACAGTAAAATGT----TA---TTTGTCAAAATGCTAGCATGTTTCGTGGTAG---TTACATATATGCCCA-TTTCAGTTACAT---------ATAAGATTAT---------AGTTACAAT-----TGTGTCCGATTTGATACAT-TTGTGCGCTGTC---GTT-TTT-T-TTTCTA-AATAGTTAAAAATGTGCCCTTT-------T-AGTTACATATGTGTCCTTTAAGTTACATATGTGC----TTTA---GTTACATATGTGACCC
gi|6 : atatttcagattgtgacacttctggggcattcttctaggatgctttacatatgatggtatttgtattgtaacctacgtatgttgTCATATCCATA---TGTGCAATATTTCATTTATGTTGCAAAATCGCGAAATGCTTTCTGTTCCGATTTACGTGAAGTCATGACGTCAATTTTAGAACCTAGAAAAAATGTCCAATGCGAAAATATTTACGATCAAATTGTTGAGATTAATTAAAATTTTAGCCGAAAAATAAAGGGCTAAAGTTATTTTCTGAGAGACCTATACGCCAGCAAATACAAAGTGCACTTTAAGTCAAGCATACTGCTTCAACAAGCGAATATTTAAGTAATATTAAGCCTTAATAGGG-TCG-TTTTGAATATTTTCATGGTTGAATAATTACCTCTAGCACACGTCTTACTATGCACTTAAACTACATATTTCATACTAATGTTAAAGAAAGTTCAACATGTAGTCCGGATCACAACCTAA--------GGTGAATTACAAAATATAATGAGT-TCGGGTTAGCTCTTTT-GTCAGTATACATACACTAGATTAACAATATCGGTATTAACAACACATATTTGAGACTATCACAACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATACA---TG---TTTGTCAAAATTCTAGCATGTTTCATGGTAG---TTACATAAATGCACA-TTTCAGTTACAT---------ATAAGATTTA---------AGTTACAT------TGTGTCCTTTTAGTTACAT-ATGTGC-----------T-T--------------TAGTTACATATGTGACC-----------------CATATGTA---TTTAAAGCACATATGTAA----CTTAAAGGACACATATGTAACt
gi|6 : gAG---TTACATTTGTGCCCGATTT--GTTACATTGGTGCCCTGTTGGGTTTTTTTCTAAATAGTTACAAA-----TGTGCCCTTTTAGTTACAT-ATGTGTCC-------------------TTTA----AGTTACATATGTGC---TT-------T-AAATACATATGGGTC---------ACATATGTAA----CTAA---AGCACATATGTAACtaaaagggcacatttgtaactatttagaaaaaaacccaacagggcaccaatgtaacaaatcgggcacaaatgtaactcaaatc
gi|6 : gtcatatccatatgtgcaatatttcatttatgttgcaaaatcgcgaaatgctttctgttccgatttacgtgaagtcatgacgtcaattttagaacctagaaaaaatgtccaatgcgaaaatatttacgatcaaattgttgagattaattaaaattttagccgaaaaataaagggctaaagttattttctgagagacctatacgccagcaaatacaaagtgcactttaagtcaagcatactgcttcaacaagcgaatatttaagtaatattaagccttaatagggtcgttttgaatattttcatggttgaataattacctctagcacacgtcttactatgcacttaaactacatatttcatactaatgttaaagaaagttcaacatgtagtccggatcacaacctaaggtgaattacaaaatataatgagttcgggttagctcttttgtcagtatacatacactagattaacaatatcggtattaacaacacatatttgagactatcacaactacatattacaatcgcaaagtatagtgcacacagtaaaatacatgtttgtcaaaattctagcatgtttcatggtagttacataaatgcacatttcagttacatataagatttaagttacattgtgtccttttaGATTTG---------AGTTACATT-----TGTGCCCGATTTGTTACAT-TGGTGCCCTGTT---G-GGTTT-T-TTTCTA-AATAGTTACAAATGTGCCCTTT-------T-AGTTACATATGTGTCCTTTAAGTTACATATGTGC----TTTA---AATACATATGcaaatc
gi|7 : gtcatatccatatgtgcaatatttcatttatgttgcaaaatcgcgaaatgctttctgttccgatttacgtgaagtcatgacgtcaattttagaacctagaaaaaatgtccaatgcgaaaatatttacgatcaaattgttgagattaattaaaattttagccgaaaaataaagggctaaagttattttctgagagacctatacgccagcaaatacaaagtgcactttaagtcaagcatactgcttcaacaagcgaatatttaagtaatattaagccttaatagggtcgttttgaatattttcatggttgaataattacctctagcacacgtcttactatgcacttaaactacatatttcatactaatgttaaagaaagttcaacatgtagtccggatcacaacctaaggtgaattacaaaatataatgagttcgggttagctcttttgtcagtatacatacactagattaacaatatcggtattaacaacacatatttgagactatcacaactacatattacaatcgcaaagtatagtgcacacagtaaaatacatgtttgtcaaaattctagcatgtttcatggtagttacataaatgcacatttcagttacatataagatttaagttacattgtgtccttttagttacatatgtgctttagttacatatgtgaccATAATGAAACATCACTATAAAAGTGCATATGGTAGCATCTGAAATCGGAAATGTTTAATATTTCCTTAAAGCATGGCCACCAGGTCATCAGATAGGTAAACATCGGTTTAGAATATGTTTATCTGCTTTTTA--ATCTAA---ATATTTATCAAATTCATA---
gi|7 : TGAGAAACCAATACACCAGCAAGTATAAAGTGCACTTTAAGTCAAGCATACTGCTTGAACAAGCGAATATATAAGTAATATTTAGCCTTAATAGGGGTCG-TTTTGAATATTTTCATAGTTGAATAATTGCCTCTAGCACACGTCTTACTATGCACTTATACAACATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTGGTCCGGATCACAACCTAAGACAACACGGTGAATTACGAAAAATAATGAGTGTCGGGTTAACTCTTTTGGTCAGTGTACATACACTAG--------------------------ATACTGGAGAGTATCACAACTACATATTACAATCGCAAAGCAAAGTGCACACAGTAAAATACATGTTG---TTTGTCAAAATTCTAGCATGTTTCGTGGTTG---TTACATTTGTGCCT--TTTTAATTACAT---------ATgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgtgttaatatgtttaaaaatataatgaacaaaaaatgtatgtaaatgagaaaccaatacaccagcaagtataaagtgcactttaagtcaagcatactgcttgaacaagcgaatatataagtaatatttagccttaataggggtcgttttgaatattttcatagttgaataattgcctctagcacacgtcttactatgcacttatacaacatatttcatactaatgttaaagaaagttcagcatgtggtccggatcacaacctaagacaacacggtgaattacgaaaaataatgagtgtcgggttaactcttttggtcagtgtacatacactagatactggagagtatcacaactacatattacaatcgcaaagcaaagtgcacacagtaaaatacatgttgtttgtcaaaattctagcatgtttcgtggttgttacatttgtgcctttttaattacatatgtgaccccagcagacgtc
gi|8 : ataatgaaacatcactataaaagtgcatatggtagcatctgaaatcggaaatgtttaatatttccttaaagcatggccaccaggtcatcagataggtaaacatcggtttagaatatgtttatctgctttttaatctaaatatttatcaaattcatagttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgtgttaatatgtttaaaaatataatgaacaaaaaatgtatgtaaaTAG---TTACAAACATGCCC--TTTTAGTTACAC---------ATGTGACCCT---------A---ACACA-----CGTGgtgaccccagcagacgtc
gi|8 : at---TG---TTCGTAAAAAATATGGTAAG----GTAGTAG---TTACATATATGCCTG-TTTCAGTTACAT---------ATAGGATTTT----------------------------------CGTTACAT-TTGTACTTTGTC---G-T-TTT-T-TTTCTA-AATAGTTACAAACATGCCCTTT-------T-AGTTACACATGTGACCCTtttagaaaaaaaacgacaaagtacaaatgtaacgaaaatcctatatgtaactgaaacaggcatatatgtaactactaccttaccatattttttacgaacaacatgtaacatctctatcgcggtgtttatccagcgaaaattgtgtatggcgtcgttttaagaaaataccagttagcacatgcattttttatatattatgttatctttatcatttaataagaaaggaatactgagttatatacggaggcgccctacttatgactttaaaactcccaattagtagacgcttatccctaattaggacactttaaagtcttaaataaaaaaaaacttagtccttataaggatattttaaagttttaaataaatttgaagtcttcaataaaataactaagtcctaattagtttttctgatagactataatgaattggcaccgtacgctcccgtagttgtgtataatttgcacccagttgaaccacttgaaacactgagtgatttccctttgttttgtatatatcgtttgtacattgtttcaaaggaaccactgaaattgatattgtatattataaagactatattttaataaaaacgtaaaaattactcatccgcgtcgattttgggctaaatgcttgatttgtacgtgcagctcgagcctgtgcgttagttatagtaactgtat
gi|8 : atcacgtgtgttCAAAGGAACCACTGA---AAT-----TGATATTGTATATTATAAAGACTATAT-TTTAATAAAAACGT-----AAAAATTACTCATCCGCGTCGATTTT-GG------GCTA-----------AATGCTTGATTTGTACGTGCAGCTCGAGCCTGTGCGTTAGTTATAGTAACTGTA----------Tacatgtaacatctctatcgcggtgtttatccagcgaaaattgtgtatggcgtcgttttaagaaaataccagttagcacatgcattttttatatattatgttatctttatcatttaataagaaaggaatactgagttatatacggaggcgccctacttatgactttaaaactcccaattagtagacgcttatccctaattaggacactttaaagtcttaaataaaaaaaaacttagtccttataaggatattttaaagttttaaataaatttgaagtcttcaataaaataactaagtcctaattagtttttctgatagactataatgaattggcaccgtacgctcccgtagttgtgtataatttgcacccagttgaaccacttgaaacactgagtgatttccctttgttttgtatatatcgtttgtacattgtttcaaaggaaccactgaaattgatattgtatattataaagactatattttaataaaaacgtaaaaattactcatccgcgtcgattttgggctaaatgcttgatttgtacgtgcagctcgagcctgtgcgttagttatagtaactgtat
gi|9 : atcacgtgtgttagggtcacatgtgtaactaaaagggcatgtttgtaactatttagaaaaaaaacgacaaagtacaaatgtaacgaaaatcctatatgtaactgaaacaggcatatatgtaactactaccttaccatattttttacgaacaacatgtaacatctctatcgcggtgtttatccagcgaaaattgtgtatggcgtcgttttaagaaaataccagttagcacatgcattttttatatattatgttatctttatcatttaataagaaaggaatactgagttatatacggaggcgccctacttatgactttaaaactcccaattagtagacgcttatccctaattaggacactttaaagtcttaaataaaaaaaaacttagtccttataaggatattttaaagttttaaataaatttgaagtcttcaataaaataactaagtcctaattagtttttctgatagactataatgaattggcaccgtacgctcccgtagttgtgtataatttgcacccagttgaaccacttgaaacactgagtgatttccctttgttttgtatatatcgtttgtacattgtttTCTGCTCCGATTTACGTGAAGTCATGACGTCACTTTTAGAATGTAGAAAAAATGTCAAATTCGAAAATATTTACAATCAAATTGTTGAAATTGATTATATTTTTAGCCGAAAAATAAAGGTCT---GTTATTTTCTAATAGACCAATACGCCAGCGATTACAAAGTGCACTTTAAGTCAAGCATATTGCCTCAACAAGCGAATATTTAAGTAATATTAAGCCATAATAGGG-TCG-TTGTGAATATTTTCATGGTTGAATAATTACCTTTAGTACACGTCTTACTATGCACTTAAACTAAATATTTCATACTAATATTAAAGAAAGTTCAGCATGTAGTCCGGATCACA-------ACAACACGGTGAATTACGAAAAA-AATGAGTGTCGGGTTAACTTTTTTGGTCAGTATACATACACTAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATCACAGCTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCATGTTG---TTCGTCAAAAATCTAGCATGTTTCGTGGTAG---TTACATATATGCCCG-TTTCAGTTACAT---------ATAAGATTTT---------AGTTACATT-----TGTGTCCAATTTGTTACAT-TTGTGCCCTGTC---G-T-TTT-T-TTTCTA-AATAGTTACAAATGTGCCCTTT-------T-AGTTACATATGTGTCTTTTAAGTTACGTATGTGC----TTTA---GTTACATATGTGACCC
blockSeqs : C . . T A A . . . . G AGAGAACGTA CATA T C A A . . ATA C C C T T A G T G T TGT TTA A TTTC AAA A TGGTGCCCT TTTCTAAATA AAACAC G AA GGG G G T A C AAGCTTT A T CCGA AAG
blockSeqs : C . . T A . . . . . G . . . C A A . . . T C A A A A . . G T TGT TTC A TTTC . . . G A . CC T T . . . . . . T . .
blockSeqs : T A . . . . . . . . . T A A . . . T . A A A G . . T A . . C TTTC . . . G A . TA . . . . . . . . A . .
blockSeqs : . . . . T . . A T T T . . G A . . A TTTC . . . G A . CA . . . . . . . . A . .
blockSeqs : . . . . . T . . A TTTC . . . G A . TA . . . . . . . . T . .
blockSeqs : . . . . C TTTC . . . G A . TA . . . . . . . . T . .
blockSeqs : . . A . . . . G T . AT . . . . . . . . T . .
blockSeqs : . . C . . . . A T . CC . . . . . . . . T . .
blockSeqs : . . C . . . . G A . CC . . . . . . . . T . .
blockSeqs : . . C . . . . A T . TA . . . . . . . . T . .
blockSeqs : . . A . . . . A A . GC . . . . . . . . A . .
blockSeqs : . . C . . . . A T . CC . . . . . . . . A . .
blockSeqs : . . . A A . CC . . . . . . . . A . .
blockSeqs : . . . A T . TT . . . . . . . . A . .
blockSeqs : . . . . . . CC . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . .
blockSeqCons : ****** TTTC
originalCons : CAAAGGAACCACTGA---AAT-----TGATATTGTATATTATAAAGACTATAT-TTTAATAAAAACGT-----AAAAATCACTCATCCGCGTCGGTTTT-GG------GCTA-----------AATGCTTGATTTGTACGTGCAGCTCGAGCCCGTGCGTTAGTTATAGTGACTGTA----------TAAAGAA----AA-AACATAACAAAACATCACTATAAAAGTGCATAAGACAGCAGCTGAAATCGGAAATGTTTAATATTTCCTTAAAGCATGGCCACCAGTTCATCAGATAGGTAAACATCGGTTTAGAATAATTTTATCTGCTTTTTA--TTCTAA---ATATTAATCAAATCCATA---TGTGCAATATTTCAATTATGTTGCAAAATCGCGAAACGCTTTCTGCTCCGATTTACGTGAAGTCATGACGTCACTTTTAGAACCTAGAAAAAATGTCCAATTCGAAAATATTTACGATCAAATTGTTGAGATTAATTATAATTTTAGCCGAAAAATAAAGGGCTAAAGTTATTTTCTGAGAGACCAATACGCCAGCGAATACAAAGTGCACTTTAAGTCAAGCATACTGCTTCAACAAGCGAATATTTAAGTAATATTAAGCCTTAATAGGG-TCG-TTTTGAATATTTTCATGGTTGAATAATTACCTCTAGCACACGTCTTACTATGCACTTAAACTACATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTAGTCCGGATCACAACCTAAGACAACACGGTGAATTACGAAAAATAATGAGTGTCGGGTTAGCTCTTTTGGTCAGTATACATACACTAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATCACAACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TG---TTCGTCAAAAATCTGGCATGTTTCGTGGTAG---TTACATATATGCCCG-TTTCAGTTACAT---------ATAGGATTTT---------GGTTACATA-----TGTGTCCGATTTGTTACAT-TTGTGCCCTGTC---G-T-TTT-T-TTTCTA-AATAGTTACAAATGTGCCCTTT-------T-AGTTACATATGTGTCCTTTNAGTTACATATGTGC----TTTA---GTTACATATGTGACCC
finalCons : CAAAGGAACCACTGA---AAT-----TGATATTGTATATTATAAAGACTATAT-TTTAATAAAAACGT-----AAAAATCACTCATCCGCGTCGGTTTT-GG------GCTA-----------AATGCTTGATTTGTACGTGCAGCTCGAGCCCGTGCGTTAGTTATAGTGACTGTA----------TAAAGAA----AA-AACATAACAAAACATCACTATAAAAGTGCATAAGACAGCAGCTGAAATCGGAAATGTTTAATATTTCCTTAAAGCATGGCCACCAGTTCATCAGATAGGTAAACATCGGTTTAGAATAATTTTATCTGCTTTTTA--TTCTAA---ATATTAATCAAATCCATA---TGTGCAATATTTCAATTATGTTGCAAAATCGCGAAACGCTTTCTGCTCCGATTTACGTGAAGTCATGACGTCACTTTTAGAACCTAGAAAAAATGTCCAATTCGAAAATATTTACGATCAAATTGTTGAGATTAATTATAATTTTAGCCGAAAAATAAAGGGCTAAAGTTATTTTCTGAGAGACCAATACGCCAGCGAATACAAAGTGCACTTTAAGTCAAGCATACTGCTTCAACAAGCGAATATTTAAGTAATATTAAGCCTTAATAGGG-TCG-TTTTGAATATTTTCATGGTTGAATAATTACCTCTAGCACACGTCTTACTATGCACTTAAACTACATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTAGTCCGGATCACAACCTAAGACAACACGGTGAATTACGAAAAATAATGAGTGTCGGGTTAGCTCTTTTGGTCAGTATACATACACTAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATCACAACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TG---TTCGTCAAAAATCTGGCATGTTTCGTGGTAG---TTACATATATGCCCG-TTTCAGTTACAT---------ATAGGATTTT---------GGTTACATA-----TGTGTCCGATTTGTTACAT-TTGTGCCCTGTC---G-T-TTT-T-TTTCTA-AATAGTTACAAATGTGCCCTTT-------T-AGTTACATATGTGTCCTTTNAGTTACATATGTGC----TTTA---GTTACATATGTGACCC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GCCAGTCGACAAATGTTCTGAATAAATGTTCCTTACTAGATTGTGATCAACATCATCGTAATAAAAAAGCAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTCATCATCACCATGGTTATCGTCATTTGCTTCTAAAGACGTTCTTAACATCCCATGTTTTGTTTTTTATTCTGAATTCTACATAAAAGTCGCTCTATATCCAATACTACATCTTTCCTGCAACTGACAACATTTTAATTTACTCATATTTCTATTCTCTATG
Unaligned ( gi|17 ): AGGCGCTGTACTTATGACTTTAAAACTCACAATTAGTAGACGCTAAGTCAAAATTAGGAGCTTTTGAAGTCTTAAATAAAAAACTTAGTCCTAATAAGGGTATATCTAAGCCTTAAATAAAATACTAAGTCCTTATTAGAAGAGTTGGATGTCTTTAATAAAATCACTAAGTCCTAATTAGTTTTTATGATAGAACATTATGAAT
Alignments
lowQualScore : 222 33333 1 22222 222222 44444444444 2222222222 2222 1 11 111 111 111 111 1111 1111111111 111111
lowQualScore : 6 333 33333 3 3 0 55555 8 333333 77777777777 2 9999999999 1111 0 6 1 6 0 33 777 111 2 2 1 1 1 1 0 0 6 6 4 0 1 000 000 1 9999 444 2 999999999 0 1111111111 000000 2 55 666 4 2 2 2 2 7777777 2 1 5555 444
lowQualScore : . ... ..... . . . ..... . ...... ........... . .......... .... . . . . . .. ... ... . . . . . . . . . . . . . ... ... . .... ... . ......... . .......... ...... . .. ... . . . . . ....... . . .... ...
lowQualScore : 7 333 33333 2 2 0 00000 0 000000 55555555555 5 2222222222 2222 0 4 4 0 8 88 555 777 0 5 0 4 4 4 8 7 7 7 3 7 9 888 888 5 3333 444 5 444444444 7 4444444444 666666 2 77 111 4 1 1 1 2 2222222 2 8 3333 444
consensus : CAAAGGAACCACTGA---AAT-----TGATATTGTATATTATAAAGACTATAT-TTTAATAAAAACGT-----AAAAATCACTCATCCGCGTCGGTTTT-GG------GCTA-----------AATGCTTGATTTGTACGTGCAGCTCGAGCCCGTGCGTTAGTTATAGTGACTGTA----------TAAAGAA----AA-AACATAACAAAACATCACTATAAAAGTGCATAAGACAGCAGCTGAAATCGGAAATGTTTAATATTTCCTTAAAGCATGGCCACCAGTTCATCAGATAGGTAAACATCGGTTTAGAATAATTTTATCTGCTTTTTA--TTCTAA---ATATTAATCAAATCCATA---TGTGCAATATTTCAATTATGTTGCAAAATCGCGAAACGCTTTCTGCTCCGATTTACGTGAAGTCATGACGTCACTTTTAGAACCTAGAAAAAATGTCCAATTCGAAAATATTTACGATCAAATTGTTGAGATTAATTATAATTTTAGCCGAAAAATAAAGGGCTAAAGTTATTTTCTGAGAGACCAATACGCCAGCGAATACAAAGTGCACTTTAAGTCAAGCATACTGCTTCAACAAGCGAATATTTAAGTAATATTAAGCCTTAATAGGG-TCG-TTTTGAATATTTTCATGGTTGAATAATTACCTCTAGCACACGTCTTACTATGCACTTAAACTACATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTAGTCCGGATCACAACCTAAGACAACACGGTGAATTACGAAAAATAATGAGTGTCGGGTTAGCTCTTTTGGTCAGTATACATACACTAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATCACAACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TG---TTCGTCAAAAATCTGGCATGTTTCGTGGTAG---TTACATATATGCCCG-TTTCAGTTACAT---------ATAGGATTTT---------GGTTACATA-----TGTGTCCGATTTGTTACAT-TTGTGCCCTGTC---G-T-TTT-T-TTTCTA-AATAGTTACAAATGTGCCCTTT-------T-AGTTACATATGTGTCCTTTNAGTTACATATGTGC----TTTA---GTTACATATGTGACCC
Reference ( family-968 ) : CAAAGGAACCACTGA---AAT-----TGATATTGTATATTATAAAGACTATAT-TTTAATAAAAACGT-----AAAAATCACTCATCCGCGTCGGTTTT-GG------GCTA-----------AATGCTTGATTTGTACGTGCAGCTCGAGCCCGTGCGTTAGTTATAGTGACTGTA----------TAAAGAA----AA-AACATAACAAAACATCACTATAAAAGTGCATAAGACAGCAGCTGAAATCGGAAATGTTTAATATTTCCTTAAAGCATGGCCACCAGTTCATCAGATAGGTAAACATCGGTTTAGAATAATTTTATCTGCTTTTTA--TTCTAA---ATATTAATCAAATCCATA---TGTGCAATATTTCAATTATGTTGCAAAATCGCGAAACGCTTTCTGCTCCGATTTACGTGAAGTCATGACGTCACTTTTAGAACCTAGAAAAAATGTCCAATTCGAAAATATTTACGATCAAATTGTTGAGATTAATTATAATTTTAGCCGAAAAATAAAGGGCTAAAGTTATTTTCTGAGAGACCAATACGCCAGCGAATACAAAGTGCACTTTAAGTCAAGCATACTGCTTCAACAAGCGAATATTTAAGTAATATTAAGCCTTAATAGGG-TCG-TTTTGAATATTTTCATGGTTGAATAATTACCTCTAGCACACGTCTTACTATGCACTTAAACTACATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTAGTCCGGATCACAACCTAAGACAACACGGTGAATTACGAAAAATAATGAGTGTCGGGTTAGCTCTTTTGGTCAGTATACATACACTAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATCACAACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TG---TTCGTCAAAAATCTGGCATGTTTCGTGGTAG---TTACATATATGCCCG-TTTCAGTTACAT---------ATAGGATTTT---------GGTTACATA-----TGTGTCCGATTTGTTACAT-TTGTGCCCTGTC---G-T-TTT-T-TTTCTA-AATAGTTACAAATGTGCCCTTT-------T-AGTTACATATGTGTCCTTTNAGTTACATATGTGC----TTTA---GTTACATATGTGACCC
gi|1 : CAATGGAAC-ACAGACGCAATCTACATAATTTTTTATAT-ATAG---TTATAT-ATTTATAAAATCTTTTTTTCAAAATCGCTGATCTGCGTCGGTTTTCGGTAAAATGCTACATTTCGGTAAAATGCTTGATTTGTACGTGCAGCTCGA-CCCTTTC--T--TTACAGTGACTGTA----------TAAAGAA----AA-AACATAATAAAACATCACTATAAAAGTGCATATGACAGCAGCTGAAATCGGAAATGTTTTTAATTTCCTTAAAGCATGGTCACCAGTTCATCAGATAGGTAAATATCGGTTTAGAATAATTTTATCTGCTTTTTAAATATTAATTAATATTAATCAAATCCATA---TGTACAATATTTCAATTATGTTGCAAAATCGCGAAATGCTTTCTGCTCCAATTTACCTGAAGTCATGCCGTCTCTTTTAGAACCTAGAAAAAATGTCTAATTCGAAAATATTTACGATCAAATTGTTGAGATTAATTATAATTTTAGCCGAAAAATAAAGGGCTAAAGTTATTTTCTGAGAGACCAATACGCCAGCAAATACAAAGTGCACTTTAAGTCAAGCATATTGCTTCAACAAGCGAGTATTTAAGTAATAATAAGCCTTAATAGGG-TCG-TTTTGAATAATTTCATGGTTGAATAATTCCTTCTAGCACACGTCTTACTATGCACTTAAACTACATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTAATCCGGATCACAACCTAAGACAACACGGTGAATTACGAAAAATAATGAGTGTCGGGTTAGTTCTTTTGGTCAGTATACATATACTACATTAACAATATCAGTATTTACAACATATATTGGAGACTATCATAACTACATATTGCAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TG---TTCGTCAAAAAGCTAGCATGTTTCGTGGTAG---TTACATATATGCCCG-TTTCAGTTACAT---------ATACGATTTT---------AGTTACATT-----TGTGTCCGATTTGTTACAT-TTGTGCCCTGTC---A-T-TTT-T-TTTCTA-AATAGTTATAAATGTGCACTTT-------T-AGTTACATATGTGTCCTTTTAGTTACATATGTGC----CTTA---GTTACATATGTGACCC
gi|10 : ---TG---TTCTTCAAAAATATGGTATG----GTAGTAA---TTAGATATATGCCTA-TTTCAGCTACAT---------ATAGGATTTT---------GGTTACATA-----TGTGTCAGATTTATTACAT-TTGT-------------C-TTT-T-TTTCTA-AATAGTTACAAATATGCCCTTT-------T-AGTAACATGTGTGTCTTTTTAGTTACATATGTGC----TTTA---GTT
gi|10 : GATATTGTATATTATAAAGACTCTATATTCAATAAACACGG-----AAAAATCACTCATCCAC----GTTAT-GG------GCccatgtaacatctcaatcacgttgtttatccgacgaatattgtgaatggcgtcattttaagaaaattcaagtaagtacatgcattttttttatatattaggttatctttatcatttaataagaaaggaatacacagttatatacagaggcgccctacttatgactttaaaattctcaattagcagacgcttagtcttaataaggagattttaaagtcttaaataaaaaaaaacttagtcctaataaggatattttaaagtctttaataaaactcgaagtcctaataaggagaattggaagtcttcaataaaataagtcctacttagtttttctgataaaacattttgatttggcaccgtatatgattatatgtttactatatatgtataatgaccaaaacagcttataatgaaattgtgtatacgactgtgacagacgatattgtatattataaagactctatattcaataaacacggaaaaatcactcatccacgttatgggc
gi|11 : aactaaagcacatatgtaactaaaaagacacacatgttactaaaagggcatatttgtaactatttagaaaaaaagacaaatgtaataaatctgacacatatgtaaccaaaatcctatatgtagctgaaataggcatatatctaattactaccataccatatttttgaagaacaccatgtaacatctcaatcacgttgtttatccgacgaatattgtgaatggcgtcattttaagaaaattcaagtaagtacatgcattttttttatatattaggttatctttatcatttaataagaaaggaatacacagttatatacagaggcgccctacttatgactttaaaattctcaattagcagacgcttagtcttaataaggagattttaaagtcttaaataaaaaaaaacttagtcctaataaggatattttaaagtctttaataaaactcgaagtcctaataaggagaattggaagtcttcaataaaataagtcctacttagtttttctgataaaacattttgatttggcaccgtatatgattatatgtttactatatatgtataatgaccaaaacagcttataatgaaattgtgtatacgactgtgacagacTACA---TG---TTCGTCAAAAATATGGTATG----GTAGTAG---TTACATATATGCCCG-TTTCAGTTACAT---------ATAAGATTTT---------G-TTACATA-----TGTGTCCGATTTGTTACAT-TTATGCAATGTCT--G-T-TTT-TATTTCTA-AATAGTTACAAATATGTCTTTT-------T-AGTTACATATGTTTCCTTTTAGTCACATATGTGC----TTTA---GTTACATATGTGACCC
gi|12 : gcttcattttaagctttaaattttgtagttgtaaaactcacggataattcattattgttctatattaattagttttcaatatccgcgtgtgtgtgcgtgtgttg-TTT-T-TTTTTA---TAGTTACAAATATGCCCTTT-------T-AGTTACATATGTGTCCTTTAAGTTACATATTTGC----TTTA---GTTACATTTGTGACCacatctcaatgacggtgtttatccggcgaaaactaaagtaagtacatacattttttatatattaggttatctttatcatttaataagaaaggaatacacatttatatacggaggcgccctactcatgactttaaaactcccaattagtagacgctaagtcctagttaggagattttaaagtcttaaataaaaaaaactttgtcctaattaggatattttaaagtcttaaataaaacactaagtcctaataagcagacttggaagtcttcaataaaaataactaagccta
gi|13 : gcaagtcgacaaacgttccgcataaaggtcccttaatagatcgtgatcaaaatcatcgtaataaaaaagcaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttttatcatcatcatggttattgtcatttgctgagacgttcttaacatcccttgatttttttattctacatgtacataaaagtcgttctagatccaatactacgtctttcctccagccagcatcattctaatttaatcatatttctattctctatgaaatttcaccagtattatgtaaaaatcagttttcgttaatgtgtaaatctgttaACTACATATTTCATACTAATGTTAAATGAACTTCAGCATGTAGTCCGGATCACAACCTTAGACAACACGGTGAATTATAAAAAATAATGAGTGTA-----AGCTCTTTTGGTCAGTATACGTACACTAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATC---ACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TGTTATTCGTCAAAAATCTATCATGTTTCGTGGTAG---TTACATAAATGCCCG-TTTCAGTTACAT---------ATAAGAT--------------------------TGTGTCCGATTTGTTACAT-TTGTGCCCTGTC---G-T-TTT-C-TTTCTA-AATAGTTACAAATGTACCCATT-------T-AGTTACATATGTGTCCTTTAAGTTTCATATGTGC----TTTA---GTTACATATTTGACCCttgttacat
gi|15 : ---TG---TTCGTC--AAATATGGTATG----ACAGTTG---TTACATATATGCCTG-TTTCAGTTACAT---------ATAGGATATT---------GGTTACATA-----TGTGTCCGA------------TGTGCTATGTCGGGG-T-TTT-T-TTCCTA-AAAAGTTACAAATATGGCCTTT-------T-AGTCACATATGTGTCCTTTTAGTTACTTATGTGC----TTTA---GTTACATATGTGACCCcaacacacgttatatgtttagttgaaacacaatacaatataatatattta
gi|16 : tgttg---TG---TTCGTCAAAAATATGATATG----GTAGTAG---TTACATATATGCCCG-TTCCAGTTATAT---------ATAGGATTTC---------GGTTACATA-----GGTGTCCGATTTGTTACTT-TTGTGCCATGTC---G-T-TTT-T-TT--TA-AATAGTTACAAATATGCCCTTT-------T-TGTTACATATGTGTCCATTTAGTTACATATGTGC----TTTA---GTTACATATGTGACCCacatgtatcacgttgtttatcgggcgaaaattgtgtatgccgttgttttaagaaaaaatcatgtaagtacaagtatttttgatatattaggttatctatatcatttaataggaaatgaatacacagtta
gi|18 : tttattaattactgttagttttccattttataagttcacactttaatatacaagggacgtctgttgAAATCACACATCCGTGTCGGATTT-GG------GCTA-----------AATGCTT-ATTTGTACGTGCAGCTCGAGCCCGTGCGTTAGTAATAGTGACTGTA----------Tggtaacatctcaatcacggtgttt
gi|19 : ttttgtgatgattgtttgacatattaagaatcaaacagtctgacaagataatgatatatatataatctttttttTTGTTACAT-TGTTGCTATGTT---GGT-TTT-T-TTTCTA-AATAGTTACAAATATTCCCTTTAAGCTTTT-AGTAACGTATGTCTCCTTTTAGTTACATATGTGC----TTTA---GTTACATATGTGACCC
gi|2 : gtttgtttTGGTAGAAATTACAAACATGCCTG-TTTAAGTTACAT---------GTAGGATTTT---------GGTTACATA-----TATGTCCGATTTATTACAT-TTGTGCTATGTC---G-G-TTT-T-TTTCTA-AATAGTTACAAATATGCCCTTT-------T-AGTAATATATGTGTCCTTTTGGTTACATATGTAC----TTTA---GTTACATATGTGACCC
gi|2 : cgtttgttgCAT---------ACACAATTTT---------GGCCGGATAAACACCGTGACTGAGATGTTACATGTTGTGCATGATG---G-T-ATG-G-T----A-GA-AATTACAAACATGCCTGTT-------TAAGTTACATGTAGG--ATTTTGGTTACATATATGTCCGATTTA----TTACATTTGTGtaccatcatgcacaacatgtaacatctcagtcacggtgtttatccggccaaaattgtgtatggcgtcgttttaagaaaattcaagtgagtacatgcatttttgatatattaggttatctttatcatttagttagaaaggaatacacagttatatacggaagcaccctgcttatgactttaaaactcccattaaatagacgctaagtcctaattaggagatttttaaagtcttaaattaacaaacttcgtcctacttaggatattttaaagtcttaaataaaacactaagtcctattaaggtgaatcggaagtcttcattaaaataagtcctaattagtttttttctgatagaacactatgaattggcaccgtatatgattatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgagcccgtgcgttagttatagtgactgtaagagaacgtataaataacataaataaaataacaaaatatcactataaaagtgcataaaacagcagctgaaatcggaaatgtttattttccttaaagcatgaccaccagttcatcagataggaaaacatcggtttagagtaattttatctgctttttattctaaatattaatcaaatccatatgtgcaatattttaattatgttcgaaatcggga
gi|2 : cgtttgttggggtcacatatgtaactaaagtacatatgtaaccaaaaggacacatatattactaaaagggcatatttgtaactatttagaaaaaaaccgacatagCTCGAGCCCGTGCGTTAGTTATAGTGACTGTAAGAGAACGTATAAATAACATAAATAAAATAACAAAATATCACTATAAAAGTGCATAAAACAGCAGCTGAAATCGGAAATGTTTA-T-TTTCCTTAAAGCATGACCACCAGTTCATCAGATAGGAAAACATCGGTTTAGAGTAATTTTATCTGCTTTTTA--TTCTAA---ATATTAATCAAATCCATA---TGTGCAATATTTTAATTATGTT-CGAAATCGGGAgcgtcgttttaagaaaattcaagtgagtacatgcatttttgatatattaggttatctttatcatttagttagaaaggaatacacagttatatacggaagcaccctgcttatgactttaaaactcccattaaatagacgctaagtcctaattaggagatttttaaagtcttaaattaacaaacttcgtcctacttaggatattttaaagtcttaaataaaacactaagtcctattaaggtgaatcggaagtcttcattaaaataagtcctaattagtttttttctgatagaacactatgaattggcaccgtatatgattatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgagcccgtgcgttagttatagtgactgtaagagaacgtataaataacataaataaaataacaaaatatcactataaaagtgcataaaacagcagctgaaatcggaaatgtttattttccttaaagcatgaccaccagttcatcagataggaaaacatcggtttagagtaattttatctgctttttattctaaatattaatcaaatccatatgtgcaatattttaattatgttcgaaatcggga
gi|20 : cgtttgttggggtcacatatgtaactaaagtacatatgtaaccaaaaggacacatatattactaaaagggcatatttgtaactatttagaaaaaaaccgacatagcacaaatgtaataaatcggacatatatgtaaccaaaatcctacatgtaacttaaacaggcatgtttgtaatttctaccataccatcatgcacaacatgtaacatctcagtcacggtgtttatccggccaaaattgtgtatggcgtcgttttaagaaaattcaagtgagtacatgcatttttgatatattaggttatctttatcatttagttagaaaggaatacacagttatatacggaagcaccctgcttatgactttaaaactcccattaaatagacgctaagtcctaattaggagatttttaaagtcttaaattaacaaacttcgtcctacttaggatattttaaagtcttaaataaaacactaagtcctattaaggtgaatcggaagtcttcattaaaataagtcctaattagtttttttctgatagaacactatgaattggcaccgtatatgattatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTACATT-----TGTGTCCGATTTGTTACAT-TTGTGCCCTGTC---G-T-TTTTT-TTTCTA-AATAGTTACAAATGTGCCCTTT-------T-AGTTACATATGTGCCCTTTTAGTTACATATGTG
gi|21 : GTGTCCGATTTGTTACAT-TTGTGCCCTATC---G-T-TTT-T-TTacccca
gi|3 : ggcaactttccagtaatctgtAAAGGAACCACTGA---AAT-----TGATATTGTATATTATAAAGACTATAT-TTTAATAAAAACGT-----AAAAATTACTCATCCGCGTCGATTTT-GG------GCTA-----------AATGCTTGATTTGTACGTGCAGCTCGAGCCTGTGCGTTAGTTATAGTAACTGTA----------TAAAGAA----AA-AGCATAA-AAAACATCACTATAAAAGTGCATAAGACAGCAGCTGAAATCGGAAATGTTCAATATTTCCTTGAAGCATGGCCACCAGTTCATCAGATAGGTAAACATCGGTTTAGAATAATTTTTTCTGCTTTTTA--TTCTAA---ATATTAATCAAATCCATAATATGTGCAATATTTCAATTATGTTGCAAAATTGCAAAACACTTTCTGCTCGAATTTACGTGAAGTCATGACGTACCTTTTAGAACCTAGAACACATGTCCAATTCGAAAATATTAAGGATCAAATTGTTGAGATTAATTATATTTTAAGCCGAAAAATAAAGGATTAAAGTTATTTCCTGAGATACCAATATGCCAGCGAATACAAAGTGCACTTCAAGTCAAGCATATTGCTTCAACAAGCGAATATTTAACTAAT-TTTAGCCTTAATAGGG-TCGTTTTTGGATATTTTCATGGTTTAATAATTACCTCTAGTACACGTCTTACTATGCACTTAAACTACATATATCATACTAATGTTTAAGAAATTTTAGCATGTTGTCCAGATCACAACCTAAGACAACACTGTGAATTACGAAAAATATTGAGTGTCGGGTTAGCTCTTT-------------TACACAAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATCACAACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCA---TGTTCTTCGTCAAAAATCCAGCATGTTTCGTGATAG---TTACATATATGTCCG-TTTCAGTACCAT---------ATAAGATTTT---------AGTTACATT-----TGT
gi|4 : ---TG---TTCGTCAAAAATATGGTATG----GTAGTAG---TTACATATATATCAG-TTTCAGTTACAT---------ATAGGGTTTT---------GGTTACATA-----TGTGTCCGATTTATTACAT-TTGTGCTATGTC---G-G-GT--------TACAATAGTTACAAATATGCCCCTT-------T-AGTAACATATGTGTCCTTTAAGTTACAAATGTGC----TTTG---GTTACATATGTGACCC
gi|4 : gtctgttgCTCGAGCCCGTGCGTTAGTTATTGTGACTGTA----------TAAAGAA----AA-AACATAACAAAACATCACTATAAAAATGCATAAGAAAGCAACTGAAATCGGAAATGTTTAATATTTTCTTAAAGCATGACCACCAGTTCATCAGATAGGTAAACATCGGTTTAGAATAATTTTATCTGCacatgtaacatctcaatcacggtgtttatccgacgaaaattgtgtatggcgtcgttttaagaaaattcaagtaagtacatgcatttttgatatattaagttatctttatcatttaataagaaaggaatatacagttatatacggaggcaccctacttatgactttaaaactcccaattagtagtcgctaagtcctaattaggagattttaaagtcttaaataaaacactaagtcctaattaggagcattggaagtcttcaaaaaaaataactaagtcgtaattagtttttctgatagaacattatgaattggcaccgtatatgagtatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgagcccgtgcgttagttattgtgactgtataaagaaaaaacataacaaaacatcactataaaaatgcataagaaagcaactgaaatcggaaatgtttaatattttcttaaagcatgaccaccagttcatcagataggtaaacatcggtttagaataattttatctgc
gi|5 : gtctgttggggtcacatatgtaaccaaagcacatttgtaacttaaaggacacatatgttactaaaggggcatatttgtaactattgtaacccgacatagcacaaatgtaataaatcggacacatatgtaaccaaaaccctatatgtaactgaaactgatatatatgtaactactaccataccatatttttgacgaacaacatgtaacatctcaatcacggtgtttatccgacgaaaattgtgtatggcgtcgttttaagaaaattcaagtaagtacatgcatttttgatatattaagttatctttatcatttaataagaaaggaatatacagttatatacggaggcaccctacttatgactttaaaactcccaattagtagtcgctaagtcctaattaggagattttaaagtcttaaataaaacactaagtcctaattaggagcattggaagtcttcaaaaaaaataactaagtcgtaattagtttttctgatagaacattatgaattggcaccgtatatgagtatacgtttattataaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATA---TGTGCAATATTTCAATTATGTGGCAAAATCGCGAAATG-TTTCTGTTCCGATTTACGTGAAGTCATGACGTCACTTTTAGAACCTAGAAAAAATGTCCAATTCGAACATATTTACAATCAAATTGTTGAGATTAATTAAAATATTAGCCGAAAAATAAAGGACTAAAGTTATTTTCTGAGAGACCAATACGCCAGCAAATACTAAGTGCACTTTAAGTCAAGCATACTGCTTCAACAAGCGAATATTTAAGTAATATTAAGCCTTAATAAGG-TCG-TTTTGTATATTTTTATGGTTGAATAATTACCTCTAGCACACGTCTTACGATGCACTTTAACTATATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTAGTCCGGATCACAACCTAATACAATATATTGAATTACGAAAAATAATAAGTGTCGGGTTAGCTCTTTTGGTCACTATACATACACTAGATTAACAATATCAGTATTAACAACATATATTGCAGACTATCACAACTACATATTACAATCGCAAAGTAACGTGCACACAGTAAAATGT----TA---TTTGTCAAAATGCTAGCATGTTTCGTGGTAG---TTACATATATGCCCA-TTTCAGTTACAT---------ATAAGATTAT---------AGTTACAAT-----TGTGTCCGATTTGATACAT-TTGTGCGCTGTC---GTT-TTT-T-TTTCTA-AATAGTTAAAAATGTGCCCTTT-------T-AGTTACATATGTGTCCTTTAAGTTACATATGTGC----TTTA---GTTACATATGTGACCC
gi|6 : atatttcagattgtgacacttctggggcattcttctaggatgctttacatatgatggtatttgtattgtaacctacgtatgttgTCATATCCATA---TGTGCAATATTTCATTTATGTTGCAAAATCGCGAAATGCTTTCTGTTCCGATTTACGTGAAGTCATGACGTCAATTTTAGAACCTAGAAAAAATGTCCAATGCGAAAATATTTACGATCAAATTGTTGAGATTAATTAAAATTTTAGCCGAAAAATAAAGGGCTAAAGTTATTTTCTGAGAGACCTATACGCCAGCAAATACAAAGTGCACTTTAAGTCAAGCATACTGCTTCAACAAGCGAATATTTAAGTAATATTAAGCCTTAATAGGG-TCG-TTTTGAATATTTTCATGGTTGAATAATTACCTCTAGCACACGTCTTACTATGCACTTAAACTACATATTTCATACTAATGTTAAAGAAAGTTCAACATGTAGTCCGGATCACAACCTAA--------GGTGAATTACAAAATATAATGAGT-TCGGGTTAGCTCTTTT-GTCAGTATACATACACTAGATTAACAATATCGGTATTAACAACACATATTTGAGACTATCACAACTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATACA---TG---TTTGTCAAAATTCTAGCATGTTTCATGGTAG---TTACATAAATGCACA-TTTCAGTTACAT---------ATAAGATTTA---------AGTTACAT------TGTGTCCTTTTAGTTACAT-ATGTGC-----------T-T--------------TAGTTACATATGTGACC-----------------CATATGTA---TTTAAAGCACATATGTAA----CTTAAAGGACACATATGTAACt
gi|6 : gAG---TTACATTTGTGCCCGATTT--GTTACATTGGTGCCCTGTTGGGTTTTTTTCTAAATAGTTACAAA-----TGTGCCCTTTTAGTTACAT-ATGTGTCC-------------------TTTA----AGTTACATATGTGC---TT-------T-AAATACATATGGGTC---------ACATATGTAA----CTAA---AGCACATATGTAACtaaaagggcacatttgtaactatttagaaaaaaacccaacagggcaccaatgtaacaaatcgggcacaaatgtaactcaaatc
gi|6 : gtcatatccatatgtgcaatatttcatttatgttgcaaaatcgcgaaatgctttctgttccgatttacgtgaagtcatgacgtcaattttagaacctagaaaaaatgtccaatgcgaaaatatttacgatcaaattgttgagattaattaaaattttagccgaaaaataaagggctaaagttattttctgagagacctatacgccagcaaatacaaagtgcactttaagtcaagcatactgcttcaacaagcgaatatttaagtaatattaagccttaatagggtcgttttgaatattttcatggttgaataattacctctagcacacgtcttactatgcacttaaactacatatttcatactaatgttaaagaaagttcaacatgtagtccggatcacaacctaaggtgaattacaaaatataatgagttcgggttagctcttttgtcagtatacatacactagattaacaatatcggtattaacaacacatatttgagactatcacaactacatattacaatcgcaaagtatagtgcacacagtaaaatacatgtttgtcaaaattctagcatgtttcatggtagttacataaatgcacatttcagttacatataagatttaagttacattgtgtccttttaGATTTG---------AGTTACATT-----TGTGCCCGATTTGTTACAT-TGGTGCCCTGTT---G-GGTTT-T-TTTCTA-AATAGTTACAAATGTGCCCTTT-------T-AGTTACATATGTGTCCTTTAAGTTACATATGTGC----TTTA---AATACATATGcaaatc
gi|7 : gtcatatccatatgtgcaatatttcatttatgttgcaaaatcgcgaaatgctttctgttccgatttacgtgaagtcatgacgtcaattttagaacctagaaaaaatgtccaatgcgaaaatatttacgatcaaattgttgagattaattaaaattttagccgaaaaataaagggctaaagttattttctgagagacctatacgccagcaaatacaaagtgcactttaagtcaagcatactgcttcaacaagcgaatatttaagtaatattaagccttaatagggtcgttttgaatattttcatggttgaataattacctctagcacacgtcttactatgcacttaaactacatatttcatactaatgttaaagaaagttcaacatgtagtccggatcacaacctaaggtgaattacaaaatataatgagttcgggttagctcttttgtcagtatacatacactagattaacaatatcggtattaacaacacatatttgagactatcacaactacatattacaatcgcaaagtatagtgcacacagtaaaatacatgtttgtcaaaattctagcatgtttcatggtagttacataaatgcacatttcagttacatataagatttaagttacattgtgtccttttagttacatatgtgctttagttacatatgtgaccATAATGAAACATCACTATAAAAGTGCATATGGTAGCATCTGAAATCGGAAATGTTTAATATTTCCTTAAAGCATGGCCACCAGGTCATCAGATAGGTAAACATCGGTTTAGAATATGTTTATCTGCTTTTTA--ATCTAA---ATATTTATCAAATTCATA---
gi|7 : TGAGAAACCAATACACCAGCAAGTATAAAGTGCACTTTAAGTCAAGCATACTGCTTGAACAAGCGAATATATAAGTAATATTTAGCCTTAATAGGGGTCG-TTTTGAATATTTTCATAGTTGAATAATTGCCTCTAGCACACGTCTTACTATGCACTTATACAACATATTTCATACTAATGTTAAAGAAAGTTCAGCATGTGGTCCGGATCACAACCTAAGACAACACGGTGAATTACGAAAAATAATGAGTGTCGGGTTAACTCTTTTGGTCAGTGTACATACACTAG--------------------------ATACTGGAGAGTATCACAACTACATATTACAATCGCAAAGCAAAGTGCACACAGTAAAATACATGTTG---TTTGTCAAAATTCTAGCATGTTTCGTGGTTG---TTACATTTGTGCCT--TTTTAATTACAT---------ATgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgtgttaatatgtttaaaaatataatgaacaaaaaatgtatgtaaatgagaaaccaatacaccagcaagtataaagtgcactttaagtcaagcatactgcttgaacaagcgaatatataagtaatatttagccttaataggggtcgttttgaatattttcatagttgaataattgcctctagcacacgtcttactatgcacttatacaacatatttcatactaatgttaaagaaagttcagcatgtggtccggatcacaacctaagacaacacggtgaattacgaaaaataatgagtgtcgggttaactcttttggtcagtgtacatacactagatactggagagtatcacaactacatattacaatcgcaaagcaaagtgcacacagtaaaatacatgttgtttgtcaaaattctagcatgtttcgtggttgttacatttgtgcctttttaattacatatgtgaccccagcagacgtc
gi|8 : ataatgaaacatcactataaaagtgcatatggtagcatctgaaatcggaaatgtttaatatttccttaaagcatggccaccaggtcatcagataggtaaacatcggtttagaatatgtttatctgctttttaatctaaatatttatcaaattcatagttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcgtgttaatatgtttaaaaatataatgaacaaaaaatgtatgtaaaTAG---TTACAAACATGCCC--TTTTAGTTACAC---------ATGTGACCCT---------A---ACACA-----CGTGgtgaccccagcagacgtc
gi|8 : at---TG---TTCGTAAAAAATATGGTAAG----GTAGTAG---TTACATATATGCCTG-TTTCAGTTACAT---------ATAGGATTTT----------------------------------CGTTACAT-TTGTACTTTGTC---G-T-TTT-T-TTTCTA-AATAGTTACAAACATGCCCTTT-------T-AGTTACACATGTGACCCTtttagaaaaaaaacgacaaagtacaaatgtaacgaaaatcctatatgtaactgaaacaggcatatatgtaactactaccttaccatattttttacgaacaacatgtaacatctctatcgcggtgtttatccagcgaaaattgtgtatggcgtcgttttaagaaaataccagttagcacatgcattttttatatattatgttatctttatcatttaataagaaaggaatactgagttatatacggaggcgccctacttatgactttaaaactcccaattagtagacgcttatccctaattaggacactttaaagtcttaaataaaaaaaaacttagtccttataaggatattttaaagttttaaataaatttgaagtcttcaataaaataactaagtcctaattagtttttctgatagactataatgaattggcaccgtacgctcccgtagttgtgtataatttgcacccagttgaaccacttgaaacactgagtgatttccctttgttttgtatatatcgtttgtacattgtttcaaaggaaccactgaaattgatattgtatattataaagactatattttaataaaaacgtaaaaattactcatccgcgtcgattttgggctaaatgcttgatttgtacgtgcagctcgagcctgtgcgttagttatagtaactgtat
gi|8 : atcacgtgtgttCAAAGGAACCACTGA---AAT-----TGATATTGTATATTATAAAGACTATAT-TTTAATAAAAACGT-----AAAAATTACTCATCCGCGTCGATTTT-GG------GCTA-----------AATGCTTGATTTGTACGTGCAGCTCGAGCCTGTGCGTTAGTTATAGTAACTGTA----------Tacatgtaacatctctatcgcggtgtttatccagcgaaaattgtgtatggcgtcgttttaagaaaataccagttagcacatgcattttttatatattatgttatctttatcatttaataagaaaggaatactgagttatatacggaggcgccctacttatgactttaaaactcccaattagtagacgcttatccctaattaggacactttaaagtcttaaataaaaaaaaacttagtccttataaggatattttaaagttttaaataaatttgaagtcttcaataaaataactaagtcctaattagtttttctgatagactataatgaattggcaccgtacgctcccgtagttgtgtataatttgcacccagttgaaccacttgaaacactgagtgatttccctttgttttgtatatatcgtttgtacattgtttcaaaggaaccactgaaattgatattgtatattataaagactatattttaataaaaacgtaaaaattactcatccgcgtcgattttgggctaaatgcttgatttgtacgtgcagctcgagcctgtgcgttagttatagtaactgtat
gi|9 : atcacgtgtgttagggtcacatgtgtaactaaaagggcatgtttgtaactatttagaaaaaaaacgacaaagtacaaatgtaacgaaaatcctatatgtaactgaaacaggcatatatgtaactactaccttaccatattttttacgaacaacatgtaacatctctatcgcggtgtttatccagcgaaaattgtgtatggcgtcgttttaagaaaataccagttagcacatgcattttttatatattatgttatctttatcatttaataagaaaggaatactgagttatatacggaggcgccctacttatgactttaaaactcccaattagtagacgcttatccctaattaggacactttaaagtcttaaataaaaaaaaacttagtccttataaggatattttaaagttttaaataaatttgaagtcttcaataaaataactaagtcctaattagtttttctgatagactataatgaattggcaccgtacgctcccgtagttgtgtataatttgcacccagttgaaccacttgaaacactgagtgatttccctttgttttgtatatatcgtttgtacattgtttTCTGCTCCGATTTACGTGAAGTCATGACGTCACTTTTAGAATGTAGAAAAAATGTCAAATTCGAAAATATTTACAATCAAATTGTTGAAATTGATTATATTTTTAGCCGAAAAATAAAGGTCT---GTTATTTTCTAATAGACCAATACGCCAGCGATTACAAAGTGCACTTTAAGTCAAGCATATTGCCTCAACAAGCGAATATTTAAGTAATATTAAGCCATAATAGGG-TCG-TTGTGAATATTTTCATGGTTGAATAATTACCTTTAGTACACGTCTTACTATGCACTTAAACTAAATATTTCATACTAATATTAAAGAAAGTTCAGCATGTAGTCCGGATCACA-------ACAACACGGTGAATTACGAAAAA-AATGAGTGTCGGGTTAACTTTTTTGGTCAGTATACATACACTAGATTAACAATATCAGTATTTACAACATATATTGGAGACTATCACAGCTACATATTACAATCGCAAAGTATAGTGCACACAGTAAAATGCATGTTG---TTCGTCAAAAATCTAGCATGTTTCGTGGTAG---TTACATATATGCCCG-TTTCAGTTACAT---------ATAAGATTTT---------AGTTACATT-----TGTGTCCAATTTGTTACAT-TTGTGCCCTGTC---G-T-TTT-T-TTTCTA-AATAGTTACAAATGTGCCCTTT-------T-AGTTACATATGTGTCTTTTAAGTTACGTATGTGC----TTTA---GTTACATATGTGACCC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GCCAGTCGACAAATGTTCTGAATAAATGTTCCTTACTAGATTGTGATCAACATCATCGTAATAAAAAAGCAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTCATCATCACCATGGTTATCGTCATTTGCTTCTAAAGACGTTCTTAACATCCCATGTTTTGTTTTTTATTCTGAATTCTACATAAAAGTCGCTCTATATCCAATACTACATCTTTCCTGCAACTGACAACATTTTAATTTACTCATATTTCTATTCTCTATG
Unaligned ( gi|17 ): AGGCGCTGTACTTATGACTTTAAAACTCACAATTAGTAGACGCTAAGTCAAAATTAGGAGCTTTTGAAGTCTTAAATAAAAAACTTAGTCCTAATAAGGGTATATCTAAGCCTTAAATAAAATACTAAGTCCTTATTAGAAGAGTTGGATGTCTTTAATAAAATCACTAAGTCCTAATTAGTTTTTATGATAGAACATTATGAAT