lowQualScore : 1 1 1 22222 1 1 111111 1 1111 333
lowQualScore : 6 5 0 7777 1 5 1 2 1 0 2 0 5 33333 5 7 8 5 000000 3 2 1 3 6 777777 4 2 33 444 00 6666 11 0000 555 44 111 1
lowQualScore : . . . .... . . . . . . . . . ..... . . . . ...... . . . . . ...... . . .. ... .. .... .. .... ... .. ... .
lowQualScore : 0 0 2 0000 0 0 0 7 7 1 1 6 2 33333 7 6 9 0 555555 3 0 1 9 0 777777 0 5 44 444 88 7777 99 2222 888 66 333 0
consensus : TGGCTGATCACCTATGCTCCACGGGACATGTTTTCTCGGAGATATCCATTGTCTGCATAGATCATAACCCTANTTGGTCAGACGAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGATTAAATACTATTCAA-CC--TTT-GGCCTCAACAAAGGGGACGATGT------ACGTGTTGC-TATACACAAATAATATACCTCGCCAGTGCATCTACCAATACATA------TATGCAATAGT-TT--AA---ATCTTACTCACACAGTTCTACTCAATTTACATATGTTTTGTTCAATATGATGCTATGACTAAATGTCGGCGTTCACGAATAGGTCTTCAACAA-ACTTTTTTGC---TTTA--TTCC-ATCAATATA
Reference ( gi|1 ) : TGACTGATCACCGATGCTCCACGGGACATGTTTTCTCGGAAATATCCATTATCTGTTTAGATCATAACCCTAATTGGTCAGACGAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGAATAAATACTATTCAA-CC--TTT-GACATCAACAACGGGGACGATGT------ACGTGTTGC-TATAAACAAATAATATACTTCGTCGGTGCATCTACCAATACATA------TATACAATAGT-TT--AA---ATCTTACTCACACAGTTCTACTCAATTTACATATGTTTTGTTCAATATGATGCTATGACTAAATGTCGGCGTTCACGAATAGGTCTTCAACAA-ACTTTTTTGC---TTTA--TT-T-ATCAATATA
gi|15 : TGGCTGATCACCTTTGCTCCACGGGACATGTTTTCTCGGAGATATCCATTATCTGCATAAATCATAACCCTAATTGGTCAGACGAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGATTAAATACT
gi|5 : CTGATCACCTATGCTCCACGGGATAT--------------ATCCATTGTCTGCACATATCA-ATCCCTAATTGGTCAATCAAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGGTTTAATACTAGTAAA-CC--TTTTGGCTTCAACAAAGGTGACGATGA------ACGT-------ATACACAAATAATATACTCCGCCAGTGCATCTACCAATACATA------TATGCAATAGT-TT--AA---ATCT--------------TACTCA-----CAC-TGTTTT------------------ACTGAATATTGGCGTTAACGAATTGGTCTTCAGCAA--CATTATTGC---TTTA--TT-CCATCAATATA
gi|2 : gATCACCTATGCTCCACTGGACATATTTTCTCGGAGATATCCATTGTCTGCACTGATTACAACCCTAATTGTTCAGTCGAGAAGAGCAAAATACGAGAATCGTACTGGATCCGCAGATTAAATCCTTTTCAATTT--TTT-GGCCTTTACAAATGGGTCGATAT------ACGTGTTGC-TATACACACATAATATACTTCGCCAGTGCATCTACCAATACATG------TATGCAATAGT-TT--GA---ATCTTAATCACACAGTTTTACTCAATTT--ATATGTTTTGTTCAATATGATGTTATGACTTAATGTCGGCGTTCACGAATTTGTCTTCAACAA-A-TGTTTTAC---TTTA--TT-a
gi|18 : TGATCCACAGGA---GTTTTCTTAGAAAAAGCCATTGTTTATATAAATCATAACGCCATTTGGTCAGATGTGAccat
gi|6 : accggtggcgaattataatTTTTCTAGGAGATGTCCACTGTTTGTATTGATCATAACCCTTTTTGGCCAGACAGGACGCGTAAATTACGAGAATCGTGCTGGATACGCAAAGTAAAAACAATTCAA-CTCATTT-GTC-TCAACGAAGGGGACGATGC------ACGTGTTGC-TATACACAAATAATGTACTTAGCCAGTGCATCCATGGATCCAGA------TATGCTATAGCGTT--AAGGTATC---GTCATATCATTCTACTAAATTCACATAGCGTTTGTTTAATATGGTGTTATGA
gi|3 : TTCTCGGAGATATCCATTATCTGTTTAGATCATAGCCCTAATTGGTCAGGCGAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGATTAAATACTATTCAAACT--TTT-GGCCTCAACAAAGGGGACGATGT------ACGTGTTGC-TATACATAAATAATATACCTCGCCAGTGCATCTACCAATACATA------TATGCAATAGT-TT--AA---ATCTTACCCAAACAGTTCTACTCAATTTAC--ATGTTTTGTTCAATATGATGCTATGACTAAATGTCGACGTTCACAAATATGTCTTCAACAA-ACTTGTTTAC---TTTA--TTCC-ATCAATATAa
gi|4 : TACATCATAACCCCATTTGGACAGACGAAAAGCGCGAAATACGAAA-------TGGATCCGCAAATTAAACACTAGTCAA-CCA-TTT-GGCCTAAAAAAGGGGGACGATGT------ACGTGTTGC-TATACACAAATAAAGTACTTCGCCAGTGCATCTACCGATACATGTACATCTATGCAATAGC-TT--AA---TTCTTTCTCATACAATTCTACTCAATTTATATATA--TTATTTAATATGATGTTAT------AT---GATGTTGAAAAACAGGTCTTCAACAACAC-TTTCTGT---TTT---TT-T-
gi|17 : atctccaatggctaatcaCTATCCAG-CCA-TTT-GGCCTTAACAAAGGGGACGATGTACATGTACGTGTTGC-TATAAACATATAATGTACTTCGCCAGTGAATCTGCCAATACGTA------TACACAATAGT-TT--AA---ATCccatct
gi|7 : --TTT-GGCCTCAACAAAGGGGACGATGT------ACGTGATGC-TATAGATAAACAATATACATCGCCAGTGCATCTTCCAATACATA------TATGCAATAGT-TT--AA---ATCTCACTCACACAGTTCGACTCAATTTACATTTGTTTTGTTCAATACGATGCTATGACTAAATGTTGGCGTTCACGAAACGATCTTCAACAA-ACTATTTTGC---TTTA--TTCC-ATCAATATA
gi|8 : cttTCAACAAAGGGGACGAAGT------ACGTGTTGC-TATACACAAATAATAAACCTCGCCAGTGTATCTACCAATACATA------TATGCAATAGT-TT--AA---ATCTTACTCACACAGCTCTACTCAATTTACATATGTTTGTTTCAATATGATGCTATGACTAAATGTCGGCGCTCACGAATATGTCTTCAACAA-ACTTTTTTGC---TTTA--TT-TCATCAATATA
gi|21 : ggctAACAAAGGGGACGATGT------ACGTGTTGC-TATA
gi|14 : cttaCAAAGGGGATGAAGT------ACGCGTTTCCTTTGCATATATAATGGACATCTTTAATGTATTTTCTCATTCATA------TATGTAGTGGT-TTGAAG---ATATTA-TCTCTTAGT--------ATTTACAAA----TTGTTCAAca
gi|19 : tcaaatttctgagacT------ACGAGTTGC-TATACACAAATAATATACCTTGCCAGTGCATCTACCAAGACATA------TATGCAATAGT-TT--AA---ATc
gi|13 : GTGTTGC-TATACACAAATAATATACCTCGCCAGTGCATCTACTAATACATA------TATGCAATAG--TT--AA---ATCTTACTCACACAGTTCTACTCAACTTACACAtcagttgcatggt
gi|9 : ACACATAATATACCTCGCCAGTGCATCTACCAATACATA------TAGGCAATAGT-TT--AA---ATCTTACTCACACAGTTCTACTCAATTTACATATGTTTTGTTCAATATGATGCTATGACTAAATGTCGGCGTTCACGAATAGGTATTCAACAA-AC--TTTTGT---TTTA--TTCC-ATCAATATatgacgaataggtcttcatcaaactttcttgctttattccgtcgatata
gi|12 : acACAATGTACTTCATAAGTGCATTTTCCGGTTCACA------TATGCAATAGT-TT--AA---A--------ATACTGTG-TA-TC---TTACTCAT------CTCA----GATGTTACGATTGTATGTTGGCATCCACAAACAGGTCTTCAACAACAC-ATTTTGCAATTCTATTTT-T-ATCTATA
gi|11 : gAATATACCTCGCCAGAGCATCTACTAATACATA------TATGCAATAGT-TT--AA---ATCTTAC----ATAGTTCTTTTCAACTTACAT--GTTTTGTTCAGTATGATGCTATGACTAAATGTCAGTGTTCACGAATTGATCTTCAACAA-TTTTTTTTGC---TTTA--TTCC-ATC-ATATA
gi|10 : ATCTGCCAATACGTA------TACACAATAGT-TC--AA---ATCTTACTCACACAGCTCTACTTAATTTATATATG-TTTGTTCATTACAATGATATGACAATATGTTAGCGTTCACAAA--------CAACA----CTTTCTGT---TTTA--T
gi|16 : tacgtatnnnnnnnnnnacgtatacacaatagtttaaTAGT-TT--AA---ATCTTACCCACACATTTCTACTCAATTTACAT--GTTTTGTTCAATATGATGCTTTGACTAAATGTCGGCGTTCACGAATATGTCTTCAGCAA-ACTTTTTTGC---TTTA--TTCC-ATCAATATAaccatttat
gi|13 : ACGAATAGGTCTTCATCAA-ACTTTCTTGC---TTTA--TTCC-GTCGATATA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): TTAAATTTCATATTGATTTTGTTTTTTACATTCGTATTAAACTCGTGTAA
Alignments
lowQualScore : 11111
lowQualScore : 3 3 66 0 1 44444 4 999999 3 0 777777 2 33 444 3333 0 6 3
lowQualScore : . . .. . . ..... . ...... . . ...... . .. ... .... . . .
lowQualScore : 2 2 99 2 0 00000 4 666666 1 8 222222 4 22 111 6666 7 2 7
consensus : TGGCTGATCACCTATGCTCCACGGGACATGTTTTCTCGGAGATATCCATTGTCTG--CATAGATCATAACCCTAATTGGTCAGACGAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGATTAAATACTATTCAA-C-C-TTT-GGCCTCAACAAAGGGGACGATGT------ACGTGTTGC-TATACACAAATAATATACCTCGCCAGTGCATCTACCAATACATA------TATGCAATAGT-TT--AA---ATCTTACTCACACAGTTCTACTCAATTTACATATGTTTTGTTCAATATGATGCTATGACTAAATGTCGGCGTTCACGAATAGGTCTTCAACAA-ACTTTTTTGCTTTATTCCATCAATATA
Reference ( family-957 ) : TGGCTGATCACCTATGCTCCACGGGACATGTTTTCTCGGAGATATCCATTGTCTG--CATAGATCATAACCCTANTTGGTCAGACGAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGATTAAATACTATTCAA-C-C-TTT-GGCCTCAACAAAGGGGACGATGT------ACGTGTTGC-TATACACAAATAATATACCTCGCCAGTGCATCTACCAATACATA------TATGCAATAGT-TT--AA---ATCTTACTCACACAGTTCTACTCAATTTACATATGTTTTGTTCAATATGATGCTATGACTAAATGTCGGCGTTCACGAATAGGTCTTCAACAA-ACTTTTTTGCTTTATTCCATCAATATA
gi|1 : TGACTGATCACCGATGCTCCACGGGACATGTTTTCTCGGAAATATCCATTATCTG--TTTAGATCATAACCCTAATTGGTCAGACGAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGAATAAATACTATTCAA-C-C-TTT-GACATCAACAACGGGGACGATGT------ACGTGTTGC-TATAAACAAATAATATACTTCGTCGGTGCATCTACCAATACATA------TATACAATAGT-TT--AA---ATCTTACTCACACAGTTCTACTCAATTTACATATGTTTTGTTCAATATGATGCTATGACTAAATGTCGGCGTTCACGAATAGGTCTTCAACAA-ACTTTTTTGCTTTATT-TATCAATATA
gi|10 : ATCTGCCAATACGTA------TACACAATAGT-TC--AA---ATCTTACTCACACAGCTCTACTTAATTTATATATG-TTTGTTCATTACAATGATATGACAATATGTTAGCGTTCACAAA--------CAACA----CTTTCTGTTTTATACCAT
gi|11 : tacgtatnnnnnnnnnnacgtatacacaatagtttaaAATATACCTCGCCAGAGCATCTACTAATACATA------TATGCAATAGT-TT--AA---ATCTTAC----ATAGTTCTTTTCAACTTACAT--GTTTTGTTCAGTATGATGCTATGACTAAATGTCAGTGTTCACGAATTGATCTTCAACAA-TTTTTTTTGCTTTATTCCATC-ATATAttat
gi|12 : ACAATGTACTTCATAAGTGCATTTTCCGGTTCACA------TATGCAATAGT-TT--AA---A--------ATACTG-TGTA-TC---TTACTCAT------CTCA----GATGTTACGATTGTATGTTGGCATCCACAAACAGGTCTTCAACAACACATTTT
gi|13 : gGTGTTGC-TATACACAAATAATATACCTCGCCAGTGCATCTACTAATACATA------TATGCAATAG--TT--AA---ATCTTACTCACACAGTTCTACTCAACTTACACAgcaattctatttttatctata
gi|13 : ACGAATAGGTCTTCATCAA-ACTTTCTTGCTTTATTCCGTCGATATAatgacgaataggtcttcatcaaactttcttgctttattccgtcgatata
gi|14 : gtgttgctatacacaaataatatacctcgccagtgcatctactaatacatatatgcaatagttaaatcttactcacacagttctactcaacttacacaatgCAAAGGGGATGAAGT------ACGCGTTTCCTTTGCATATATAATGGACATCTTTAATGTATTTTCTCATTCATA------TATGTAGTGGT-TTGAAG---ATATTA-TCTCTTAGT--------ATTTACAAA----TTGTTCAA
gi|15 : tcaaatttctgagacTGGCTGATCACCTTTGCTCCACGGGACATGTTTTCTCGGAGATATCCATTATCTG--CATAAATCATAACCCTAATTGGTCAGACGAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGATTAAATACTc
gi|16 : TAGT-TT--AA---ATCTTACCCACACATTTCTACTCAATTTACAT--GTTTTGTTCAATATGATGCTTTGACTAAATGTCGGCGTTCACGAATATGTCTTCAGCAA-ACTTTTTTGCTTTATTCCATCAATATA
gi|17 : CTATCCAG-C-CATTT-GGCCTTAACAAAGGGGACGATGTACATGTACGTGTTGC-TATAAACATATAATGTACTTCGCCAGTGAATCTGCCAATACGTA------TACACAATAGT-TT--AA---ATC
gi|18 : TGATCCACAGGA---GTTTTCTTAGAAAAAGCCATTGTTTA--TATAAATCATAACGCCATTTGGTCAGATGTGA
gi|19 : accggtggcgaattataatT------ACGAGTTGC-TATACACAAATAATATACCTTGCCAGTGCATCTACCAAGACATA------TATGCAATAGT-TT--AA---AT
gi|2 : ATCACCTATGCTCCACTGGACATATTTTCTCGGAGATATCCATTGTCTG--CACTGATTACAACCCTAATTGTTCAGTCGAGAAGAGCAAAATACGAGAATCGTACTGGATCCGCAGATTAAATCCTTTTCAATT-T-TTT-GGCCTTTACAAATGGGTCGATAT------ACGTGTTGC-TATACACACATAATATACTTCGCCAGTGCATCTACCAATACATG------TATGCAATAGT-TT--GA---ATCTTAATCACACAGTTTTACTCAATTT--ATATGTTTTGTTCAATATGATGTTATGACTTAATGTCGGCGTTCACGAATTTGTCTTCAACAA-A-TGTTTTACTTTATTCCATtcagttgcatggt
gi|21 : AACAAAGGGGACGATGT------ACGTGTTGC-TATACA
gi|3 : cttaTTCTCGGAGATATCCATTATCTG--TTTAGATCATAGCCCTAATTGGTCAGGCGAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGATTAAATACTATTCAAAC-T-TTT-GGCCTCAACAAAGGGGACGATGT------ACGTGTTGC-TATACATAAATAATATACCTCGCCAGTGCATCTACCAATACATA------TATGCAATAGT-TT--AA---ATCTTACCCAAACAGTTCTACTCAATTTAC--ATGTTTTGTTCAATATGATGCTATGACTAAATGTCGACGTTCACAAATATGTCTTCAACAA-ACTTGTTTACTTTATTCCATCAATATA
gi|4 : ATCTCCAATGGCTAATCATACATCATAACCCCATTTGGACAGACGAAAAGCGCGAAATACGAAA-------TGGATCCGCAAATTAAACACTAGTCAA-C-CATTT-GGCCTAAAAAAGGGGGACGATGT------ACGTGTTGC-TATACACAAATAAAGTACTTCGCCAGTGCATCTACCGATACATGTACATCTATGCAATAGC-TT--AA---TTCTTTCTCATACAATTCTACTCAATTTATATATA--TTATTTAATATGATGTTAT------AT---GATGTTGAAAAACAGGTCTTCAACAACAC-TTTCTGTTTTTTTCCATC
gi|5 : GCTGATCACCTATGCTCCACGGGATAT--------------ATCCATTGTCTG--CACATATCA-ATCCCTAATTGGTCAATCAAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGGTTTAATACTAGTAAA-C-C-TTTTGGCTTCAACAAAGGTGACGATGA------ACGT-------ATACACAAATAATATACTCCGCCAGTGCATCTACCAATACATA------TATGCAATAGT-TT--AA---ATCT--------------TACTCA-----CAC-TGTTTT------------------ACTGAATATTGGCGTTAACGAATTGGTCTTCAGC-A-ACATTATTGCTTTATTCCATCAATATAt
gi|6 : TTTTCTAGGAGATGTCCACTGTTTG--TATTGATCATAACCCTTTTTGGCCAGACAGGACGCGTAAATTACGAGAATCGTGCTGGATACGCAAAGTAAAAACAATTCAA-CTC-ATT-TGTCTCAACGAAGGGGACGATGC------ACGTGTTGC-TATACACAAATAATGTACTTAGCCAGTGCATCCATGGATCCAGA------TATGCTATAGCGTT--AAGGTATC---GTCATATCATTCTACTAAATTCACATAGCGTTTGTTTAATATGGTGTTATGAa
gi|7 : -TTT-GGCCTCAACAAAGGGGACGATGT------ACGTGATGC-TATAGATAAACAATATACATCGCCAGTGCATCTTCCAATACATA------TATGCAATAGT-TT--AA---ATCTCACTCACACAGTTCGACTCAATTTACATTTGTTTTGTTCAATACGATGCTATGACTAAATGTTGGCGTTCACGAAACGATCTTCAACAA-ACTATTTTGCTTTATTCCATCAATATAa
gi|8 : ctt-GGCTTCAACAAAGGGGACGAAGT------ACGTGTTGC-TATACACAAATAATAAACCTCGCCAGTGTATCTACCAATACATA------TATGCAATAGT-TT--AA---ATCTTACTCACACAGCTCTACTCAATTTACATATGTTTGTTTCAATATGATGCTATGACTAAATGTCGGCGCTCACGAATATGTCTTCAACAA-ACTTTTTTGCTTTATTTCATCAATATA
gi|9 : ACACACATAATATACCTCGCCAGTGCATCTACCAATACATA------TAGGCAATAGT-TT--AA---ATCTTACTCACACAGTTCTACTCAATTTACATATGTTTTGTTCAATATGATGCTATGACTAAATGTCGGCGTTCACGAATAGGTATTCAACAA-AC--TTTTGTTTTATTCCATCAATAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTAAATTTCATATTGATTTTGTTTTTTACATTCGTATTAAACTCGTGTAA
Alignments
lowQualScore : 11111
lowQualScore : 3 3 66 0 0 44444 4 999999 3 0 777777 2 33 444 3333 0 6 3
lowQualScore : . . .. . . ..... . ...... . . ...... . .. ... .... . . .
lowQualScore : 2 2 99 2 8 00000 4 666666 1 8 222222 4 22 111 6666 7 2 7
consensus : TGGCTGATCACCTATGCTCCACGGGACATGTTTTCTCGGAGATATCCATTGTCTG--CATAGATCATAACCCTAATTGGTCAGACGAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGATTAAATACTATTCAA-C-C-TTT-GGCCTCAACAAAGGGGACGATGT------ACGTGTTGC-TATACACAAATAATATACCTCGCCAGTGCATCTACCAATACATA------TATGCAATAGT-TT--AA---ATCTTACTCACACAGTTCTACTCAATTTACATATGTTTTGTTCAATATGATGCTATGACTAAATGTCGGCGTTCACGAATAGGTCTTCAACAA-ACTTTTTTGCTTTATTCCATCAATATA
Reference ( family-957 ) : TGGCTGATCACCTATGCTCCACGGGACATGTTTTCTCGGAGATATCCATTGTCTG--CATAGATCATAACCCTAATTGGTCAGACGAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGATTAAATACTATTCAA-C-C-TTT-GGCCTCAACAAAGGGGACGATGT------ACGTGTTGC-TATACACAAATAATATACCTCGCCAGTGCATCTACCAATACATA------TATGCAATAGT-TT--AA---ATCTTACTCACACAGTTCTACTCAATTTACATATGTTTTGTTCAATATGATGCTATGACTAAATGTCGGCGTTCACGAATAGGTCTTCAACAA-ACTTTTTTGCTTTATTCCATCAATATA
gi|1 : TGACTGATCACCGATGCTCCACGGGACATGTTTTCTCGGAAATATCCATTATCTG--TTTAGATCATAACCCTAATTGGTCAGACGAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGAATAAATACTATTCAA-C-C-TTT-GACATCAACAACGGGGACGATGT------ACGTGTTGC-TATAAACAAATAATATACTTCGTCGGTGCATCTACCAATACATA------TATACAATAGT-TT--AA---ATCTTACTCACACAGTTCTACTCAATTTACATATGTTTTGTTCAATATGATGCTATGACTAAATGTCGGCGTTCACGAATAGGTCTTCAACAA-ACTTTTTTGCTTTATT-TATCAATATA
gi|10 : ATCTGCCAATACGTA------TACACAATAGT-TC--AA---ATCTTACTCACACAGCTCTACTTAATTTATATATG-TTTGTTCATTACAATGATATGACAATATGTTAGCGTTCACAAA--------CAACA----CTTTCTGTTTTATACCAT
gi|11 : tacgtatnnnnnnnnnnacgtatacacaatagtttaaAATATACCTCGCCAGAGCATCTACTAATACATA------TATGCAATAGT-TT--AA---ATCTTAC----ATAGTTCTTTTCAACTTACAT--GTTTTGTTCAGTATGATGCTATGACTAAATGTCAGTGTTCACGAATTGATCTTCAACAA-TTTTTTTTGCTTTATTCCATC-ATATAttat
gi|12 : ACAATGTACTTCATAAGTGCATTTTCCGGTTCACA------TATGCAATAGT-TT--AA---A--------ATACTG-TGTA-TC---TTACTCAT------CTCA----GATGTTACGATTGTATGTTGGCATCCACAAACAGGTCTTCAACAACACATTTT
gi|13 : gGTGTTGC-TATACACAAATAATATACCTCGCCAGTGCATCTACTAATACATA------TATGCAATAG--TT--AA---ATCTTACTCACACAGTTCTACTCAACTTACACAgcaattctatttttatctata
gi|13 : ACGAATAGGTCTTCATCAA-ACTTTCTTGCTTTATTCCGTCGATATAatgacgaataggtcttcatcaaactttcttgctttattccgtcgatata
gi|14 : gtgttgctatacacaaataatatacctcgccagtgcatctactaatacatatatgcaatagttaaatcttactcacacagttctactcaacttacacaatgCAAAGGGGATGAAGT------ACGCGTTTCCTTTGCATATATAATGGACATCTTTAATGTATTTTCTCATTCATA------TATGTAGTGGT-TTGAAG---ATATTA-TCTCTTAGT--------ATTTACAAA----TTGTTCAA
gi|15 : tcaaatttctgagacTGGCTGATCACCTTTGCTCCACGGGACATGTTTTCTCGGAGATATCCATTATCTG--CATAAATCATAACCCTAATTGGTCAGACGAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGATTAAATACTc
gi|16 : TAGT-TT--AA---ATCTTACCCACACATTTCTACTCAATTTACAT--GTTTTGTTCAATATGATGCTTTGACTAAATGTCGGCGTTCACGAATATGTCTTCAGCAA-ACTTTTTTGCTTTATTCCATCAATATA
gi|17 : CTATCCAG-C-CATTT-GGCCTTAACAAAGGGGACGATGTACATGTACGTGTTGC-TATAAACATATAATGTACTTCGCCAGTGAATCTGCCAATACGTA------TACACAATAGT-TT--AA---ATC
gi|18 : TGATCCACAGGA---GTTTTCTTAGAAAAAGCCATTGTTTA--TATAAATCATAACGCCATTTGGTCAGATGTGA
gi|19 : accggtggcgaattataatT------ACGAGTTGC-TATACACAAATAATATACCTTGCCAGTGCATCTACCAAGACATA------TATGCAATAGT-TT--AA---AT
gi|2 : ATCACCTATGCTCCACTGGACATATTTTCTCGGAGATATCCATTGTCTG--CACTGATTACAACCCTAATTGTTCAGTCGAGAAGAGCAAAATACGAGAATCGTACTGGATCCGCAGATTAAATCCTTTTCAATT-T-TTT-GGCCTTTACAAATGGGTCGATAT------ACGTGTTGC-TATACACACATAATATACTTCGCCAGTGCATCTACCAATACATG------TATGCAATAGT-TT--GA---ATCTTAATCACACAGTTTTACTCAATTT--ATATGTTTTGTTCAATATGATGTTATGACTTAATGTCGGCGTTCACGAATTTGTCTTCAACAA-A-TGTTTTACTTTATTCCATtcagttgcatggt
gi|21 : AACAAAGGGGACGATGT------ACGTGTTGC-TATACA
gi|3 : cttaTTCTCGGAGATATCCATTATCTG--TTTAGATCATAGCCCTAATTGGTCAGGCGAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGATTAAATACTATTCAAAC-T-TTT-GGCCTCAACAAAGGGGACGATGT------ACGTGTTGC-TATACATAAATAATATACCTCGCCAGTGCATCTACCAATACATA------TATGCAATAGT-TT--AA---ATCTTACCCAAACAGTTCTACTCAATTTAC--ATGTTTTGTTCAATATGATGCTATGACTAAATGTCGACGTTCACAAATATGTCTTCAACAA-ACTTGTTTACTTTATTCCATCAATATA
gi|4 : ATCTCCAATGGCTAATCATACATCATAACCCCATTTGGACAGACGAAAAGCGCGAAATACGAAA-------TGGATCCGCAAATTAAACACTAGTCAA-C-CATTT-GGCCTAAAAAAGGGGGACGATGT------ACGTGTTGC-TATACACAAATAAAGTACTTCGCCAGTGCATCTACCGATACATGTACATCTATGCAATAGC-TT--AA---TTCTTTCTCATACAATTCTACTCAATTTATATATA--TTATTTAATATGATGTTAT------AT---GATGTTGAAAAACAGGTCTTCAACAACAC-TTTCTGTTTTTTTCCATC
gi|5 : GCTGATCACCTATGCTCCACGGGATAT--------------ATCCATTGTCTG--CACATATCA-ATCCCTAATTGGTCAATCAAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGGTTTAATACTAGTAAA-C-C-TTTTGGCTTCAACAAAGGTGACGATGA------ACGT-------ATACACAAATAATATACTCCGCCAGTGCATCTACCAATACATA------TATGCAATAGT-TT--AA---ATCT--------------TACTCA-----CAC-TGTTTT------------------ACTGAATATTGGCGTTAACGAATTGGTCTTCAGC-A-ACATTATTGCTTTATTCCATCAATATAt
gi|6 : TTTTCTAGGAGATGTCCACTGTTTG--TATTGATCATAACCCTTTTTGGCCAGACAGGACGCGTAAATTACGAGAATCGTGCTGGATACGCAAAGTAAAAACAATTCAA-CTC-ATT-TGTCTCAACGAAGGGGACGATGC------ACGTGTTGC-TATACACAAATAATGTACTTAGCCAGTGCATCCATGGATCCAGA------TATGCTATAGCGTT--AAGGTATC---GTCATATCATTCTACTAAATTCACATAGCGTTTGTTTAATATGGTGTTATGAa
gi|7 : -TTT-GGCCTCAACAAAGGGGACGATGT------ACGTGATGC-TATAGATAAACAATATACATCGCCAGTGCATCTTCCAATACATA------TATGCAATAGT-TT--AA---ATCTCACTCACACAGTTCGACTCAATTTACATTTGTTTTGTTCAATACGATGCTATGACTAAATGTTGGCGTTCACGAAACGATCTTCAACAA-ACTATTTTGCTTTATTCCATCAATATAa
gi|8 : ctt-GGCTTCAACAAAGGGGACGAAGT------ACGTGTTGC-TATACACAAATAATAAACCTCGCCAGTGTATCTACCAATACATA------TATGCAATAGT-TT--AA---ATCTTACTCACACAGCTCTACTCAATTTACATATGTTTGTTTCAATATGATGCTATGACTAAATGTCGGCGCTCACGAATATGTCTTCAACAA-ACTTTTTTGCTTTATTTCATCAATATA
gi|9 : ACACACATAATATACCTCGCCAGTGCATCTACCAATACATA------TAGGCAATAGT-TT--AA---ATCTTACTCACACAGTTCTACTCAATTTACATATGTTTTGTTCAATATGATGCTATGACTAAATGTCGGCGTTCACGAATAGGTATTCAACAA-AC--TTTTGTTTTATTCCATCAATAT
blockSeqs : C G AT CCA T ACATGT C TACATC G GA GGT ATGT C C
blockSeqs : C G . TTT . . . . . . . ATGT C T
blockSeqs : T A . ACT . . . . . . . AGCG . A
blockSeqs : . . . CCA . . . . . . . TTGT . T
blockSeqs : . CTC . . . . . . . ATGT . T
blockSeqs : . CC . . . . . . . ATGT . T
blockSeqs : . . . . . . . . ATG . T
blockSeqs : . . . . . . . ATA . A
blockSeqs : . . . . . . TGT . T
blockSeqs : . . . . . . GT . T
blockSeqs : . . . . . . AT . .
blockSeqs : . . . . . GT . .
blockSeqs : . . . . A
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqCons : CCN**
originalCons : TGGCTGATCACCTATGCTCCACGGGACATGTTTTCTCGGAGATATCCATTGTCTG--CATAGATCATAACCCTAATTGGTCAGACGAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGATTAAATACTATTCAA-C-C-TTT-GGCCTCAACAAAGGGGACGATGT------ACGTGTTGC-TATACACAAATAATATACCTCGCCAGTGCATCTACCAATACATA------TATGCAATAGT-TT--AA---ATCTTACTCACACAGTTCTACTCAATTTACATATGTTTTGTTCAATATGATGCTATGACTAAATGTCGGCGTTCACGAATAGGTCTTCAACAA-ACTTTTTTGCTTTATTCCATCAATATA
finalCons : TGGCTGATCACCTATGCTCCACGGGACATGTTTTCTCGGAGATATCCATTGTCTG--CATAGATCATAACCCTAATTGGTCAGACGAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGATTAAATACTATTCAACCN--TTT-GGCCTCAACAAAGGGGACGATGT------ACGTGTTGC-TATACACAAATAATATACCTCGCCAGTGCATCTACCAATACATA------TATGCAATAGT-TT--AA---ATCTTACTCACACAGTTCTACTCAATTTACATATGTTTTGTTCAATATGATGCTATGACTAAATGTCGGCGTTCACGAATAGGTCTTCAACAA-ACTTTTTTGCTTTATTCCATCAATATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTAAATTTCATATTGATTTTGTTTTTTACATTCGTATTAAACTCGTGTAA
Alignments
lowQualScore : 3 3 66 0 0 5 5 999999 3 0 777777 2 33 444 3333 0 6 3
lowQualScore : . . .. . . . . ...... . . ...... . .. ... .... . . .
lowQualScore : 2 2 99 2 8 0 9 666666 1 8 222222 4 22 111 6666 7 2 7
consensus : TGGCTGATCACCTATGCTCCACGGGACATGTTTTCTCGGAGATATCCATTGTCTG--CATAGATCATAACCCTAATTGGTCAGACGAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGATTAAATACTATTCAAC-CNTTTGGCCTCAACAAAGGGGACGATGT------ACGTGTTGC-TATACACAAATAATATACCTCGCCAGTGCATCTACCAATACATA------TATGCAATAGT-TT--AA---ATCTTACTCACACAGTTCTACTCAATTTACATATGTTTTGTTCAATATGATGCTATGACTAAATGTCGGCGTTCACGAATAGGTCTTCAACAA-ACTTTTTTGCTTTATTCCATCAATATA
Reference ( family-957 ) : TGGCTGATCACCTATGCTCCACGGGACATGTTTTCTCGGAGATATCCATTGTCTG--CATAGATCATAACCCTAATTGGTCAGACGAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGATTAAATACTATTCAAC-CNTTTGGCCTCAACAAAGGGGACGATGT------ACGTGTTGC-TATACACAAATAATATACCTCGCCAGTGCATCTACCAATACATA------TATGCAATAGT-TT--AA---ATCTTACTCACACAGTTCTACTCAATTTACATATGTTTTGTTCAATATGATGCTATGACTAAATGTCGGCGTTCACGAATAGGTCTTCAACAA-ACTTTTTTGCTTTATTCCATCAATATA
gi|1 : TGACTGATCACCGATGCTCCACGGGACATGTTTTCTCGGAAATATCCATTATCTG--TTTAGATCATAACCCTAATTGGTCAGACGAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGAATAAATACTATTCAAC-C-TTTGACATCAACAACGGGGACGATGT------ACGTGTTGC-TATAAACAAATAATATACTTCGTCGGTGCATCTACCAATACATA------TATACAATAGT-TT--AA---ATCTTACTCACACAGTTCTACTCAATTTACATATGTTTTGTTCAATATGATGCTATGACTAAATGTCGGCGTTCACGAATAGGTCTTCAACAA-ACTTTTTTGCTTTATT-TATCAATATA
gi|10 : ATCTGCCAATACGTA------TACACAATAGT-TC--AA---ATCTTACTCACACAGCTCTACTTAATTTATATATG-TTTGTTCATTACAATGATATGACAATATGTTAGCGTTCACAAA--------CAACA----CTTTCTGTTTTATACCAT
gi|11 : tacgtatnnnnnnnnnnacgtatacacaatagtttaaAATATACCTCGCCAGAGCATCTACTAATACATA------TATGCAATAGT-TT--AA---ATCTTAC----ATAGTTCTTTTCAACTTACAT--GTTTTGTTCAGTATGATGCTATGACTAAATGTCAGTGTTCACGAATTGATCTTCAACAA-TTTTTTTTGCTTTATTCCATC-ATATAttat
gi|12 : ACAATGTACTTCATAAGTGCATTTTCCGGTTCACA------TATGCAATAGT-TT--AA---A--------ATACTG-TGTA-TC---TTACTCAT------CTCA----GATGTTACGATTGTATGTTGGCATCCACAAACAGGTCTTCAACAACACATTTT
gi|13 : gGTGTTGC-TATACACAAATAATATACCTCGCCAGTGCATCTACTAATACATA------TATGCAATAG--TT--AA---ATCTTACTCACACAGTTCTACTCAACTTACACAgcaattctatttttatctata
gi|13 : ACGAATAGGTCTTCATCAA-ACTTTCTTGCTTTATTCCGTCGATATAatgacgaataggtcttcatcaaactttcttgctttattccgtcgatata
gi|14 : gtgttgctatacacaaataatatacctcgccagtgcatctactaatacatatatgcaatagttaaatcttactcacacagttctactcaacttacacaatgCAAAGGGGATGAAGT------ACGCGTTTCCTTTGCATATATAATGGACATCTTTAATGTATTTTCTCATTCATA------TATGTAGTGGT-TTGAAG---ATATTA-TCTCTTAGT--------ATTTACAAA----TTGTTCAA
gi|15 : tcaaatttctgagacTGGCTGATCACCTTTGCTCCACGGGACATGTTTTCTCGGAGATATCCATTATCTG--CATAAATCATAACCCTAATTGGTCAGACGAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGATTAAATACTc
gi|16 : TAGT-TT--AA---ATCTTACCCACACATTTCTACTCAATTTACAT--GTTTTGTTCAATATGATGCTTTGACTAAATGTCGGCGTTCACGAATATGTCTTCAGCAA-ACTTTTTTGCTTTATTCCATCAATATA
gi|17 : CTATCCAGC-CATTTGGCCTTAACAAAGGGGACGATGTACATGTACGTGTTGC-TATAAACATATAATGTACTTCGCCAGTGAATCTGCCAATACGTA------TACACAATAGT-TT--AA---ATC
gi|18 : TGATCCACAGGA---GTTTTCTTAGAAAAAGCCATTGTTTA--TATAAATCATAACGCCATTTGGTCAGATGTGA
gi|19 : accggtggcgaattataatT------ACGAGTTGC-TATACACAAATAATATACCTTGCCAGTGCATCTACCAAGACATA------TATGCAATAGT-TT--AA---AT
gi|2 : ATCACCTATGCTCCACTGGACATATTTTCTCGGAGATATCCATTGTCTG--CACTGATTACAACCCTAATTGTTCAGTCGAGAAGAGCAAAATACGAGAATCGTACTGGATCCGCAGATTAAATCCTTTTCAAT-TTTTTGGCCTTTACAAATGGGTCGATAT------ACGTGTTGC-TATACACACATAATATACTTCGCCAGTGCATCTACCAATACATG------TATGCAATAGT-TT--GA---ATCTTAATCACACAGTTTTACTCAATTT--ATATGTTTTGTTCAATATGATGTTATGACTTAATGTCGGCGTTCACGAATTTGTCTTCAACAA-A-TGTTTTACTTTATTCCATtcagttgcatggt
gi|21 : AACAAAGGGGACGATGT------ACGTGTTGC-TATACA
gi|3 : cttaTTCTCGGAGATATCCATTATCTG--TTTAGATCATAGCCCTAATTGGTCAGGCGAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGATTAAATACTATTCAAA-CTTTTGGCCTCAACAAAGGGGACGATGT------ACGTGTTGC-TATACATAAATAATATACCTCGCCAGTGCATCTACCAATACATA------TATGCAATAGT-TT--AA---ATCTTACCCAAACAGTTCTACTCAATTTAC--ATGTTTTGTTCAATATGATGCTATGACTAAATGTCGACGTTCACAAATATGTCTTCAACAA-ACTTGTTTACTTTATTCCATCAATATA
gi|4 : ATCTCCAATGGCTAATCATACATCATAACCCCATTTGGACAGACGAAAAGCGCGAAATACGAAA-------TGGATCCGCAAATTAAACACTAGTCAAC-CATTTGGCCTAAAAAAGGGGGACGATGT------ACGTGTTGC-TATACACAAATAAAGTACTTCGCCAGTGCATCTACCGATACATGTACATCTATGCAATAGC-TT--AA---TTCTTTCTCATACAATTCTACTCAATTTATATATA--TTATTTAATATGATGTTAT------AT---GATGTTGAAAAACAGGTCTTCAACAACAC-TTTCTGTTTTTTTCCATC
gi|5 : GCTGATCACCTATGCTCCACGGGATAT--------------ATCCATTGTCTG--CACATATCA-ATCCCTAATTGGTCAATCAAGAAGCGCAAAATACGAGAATCGTACTGGATCCGCAGGTTTAATACTAGTAAAC-CTTTTGGCTTCAACAAAGGTGACGATGA------ACGT-------ATACACAAATAATATACTCCGCCAGTGCATCTACCAATACATA------TATGCAATAGT-TT--AA---ATCT--------------TACTCA-----CAC-TGTTTT------------------ACTGAATATTGGCGTTAACGAATTGGTCTTCAGC-A-ACATTATTGCTTTATTCCATCAATATAt
gi|6 : TTTTCTAGGAGATGTCCACTGTTTG--TATTGATCATAACCCTTTTTGGCCAGACAGGACGCGTAAATTACGAGAATCGTGCTGGATACGCAAAGTAAAAACAATTCAACTCATTT-GTCTCAACGAAGGGGACGATGC------ACGTGTTGC-TATACACAAATAATGTACTTAGCCAGTGCATCCATGGATCCAGA------TATGCTATAGCGTT--AAGGTATC---GTCATATCATTCTACTAAATTCACATAGCGTTTGTTTAATATGGTGTTATGAa
gi|7 : C-TTTTTGGCCTCAACAAAGGGGACGATGT------ACGTGATGC-TATAGATAAACAATATACATCGCCAGTGCATCTTCCAATACATA------TATGCAATAGT-TT--AA---ATCTCACTCACACAGTTCGACTCAATTTACATTTGTTTTGTTCAATACGATGCTATGACTAAATGTTGGCGTTCACGAAACGATCTTCAACAA-ACTATTTTGCTTTATTCCATCAATATAa
gi|8 : GGCTTCAACAAAGGGGACGAAGT------ACGTGTTGC-TATACACAAATAATAAACCTCGCCAGTGTATCTACCAATACATA------TATGCAATAGT-TT--AA---ATCTTACTCACACAGCTCTACTCAATTTACATATGTTTGTTTCAATATGATGCTATGACTAAATGTCGGCGCTCACGAATATGTCTTCAACAA-ACTTTTTTGCTTTATTTCATCAATATA
gi|9 : ACACACATAATATACCTCGCCAGTGCATCTACCAATACATA------TAGGCAATAGT-TT--AA---ATCTTACTCACACAGTTCTACTCAATTTACATATGTTTTGTTCAATATGATGCTATGACTAAATGTCGGCGTTCACGAATAGGTATTCAACAA-AC--TTTTGTTTTATTCCATCAATAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTAAATTTCATATTGATTTTGTTTTTTACATTCGTATTAAACTCGTGTAA