lowQualScore : 11111111111111111111111111111111111 111111111111111111
lowQualScore : 1111111 111111 333 1111 33333333333 1111111111 1 11111111 2222222222222 1 333333333 2222 333333 1111111 222 33333333333333333 2222 11 1 1 22222222222222222222222222222222222 111 11 7777777777777777777777 333333333333333333 22222222222 11 000000000000000000 66666666666666666666666666666666666666666666 1 3 1 11 11 1
lowQualScore : 6 8888888 222222 0 2 000 4 99 3 0000 00000000000 7777777777 0 3 88888888 7777777777777 6 1 6 777777777 1 2 0000 333333 5 8888888 111 55 0 0 11111111111111111 6 0 3 3333 6 3 6 44 8 0 0 0 66666666666666666666666666666666666 888 6 1 11 3333333333333333333333 000000000000000000 33333333333 2 0 5 00 777777777777777777 1 4 4 66 3 777 77777777777777777777777777777777777777777777 5 5 5 55 0 0 5 1 1 5 55 2 88 55 1 1 2222 6
lowQualScore : . ....... ...... . . ... . .. . .... ........... .......... . . ........ ............. . . . ......... . . .... ...... . ....... ... .. . . ................. . . . .... . . . .. . . . . ................................... ... . . .. ...................... .................. ........... . . . .. .................. . . . .. . ... ............................................ . . . .. . . . . . . .. . .. .. . . .... .
lowQualScore : 0 9999999 444444 1 5 333 0 99 6 4444 00000000000 5555555555 5 5 11111111 5555555555555 0 4 8 111111111 5 2 0000 666666 0 5555555 000 55 2 4 11111111111111111 7 7 2 2222 0 2 0 00 0 0 0 2 88888888888888888888888888888888888 666 0 0 00 5555555555555555555555 666666666666666666 88888888888 2 1 0 55 666666666666666666 4 4 4 77 2 888 33333333333333333333333333333333333333333333 0 0 0 11 6 8 0 9 7 1 22 2 88 88 4 6 6666 0
consensus : NCCCCTCACACTCAG-------CCAC---G--TTCCCACTACGTCCTCAAAAAA-TTG-G-GTGGACGCAGTAAGAACTT----GTACA-----------ACGTAGTAG----------GAACGCAGTAG--------AAA-------------CCGATAAGGACGTGGAATGGTCTCCATGGACGTGGAGGACGTGGTCAAACTTTGGACATGTT----AAAAAA---CGTAGTGAGGACGTGGTCGAATCAG-GACG------CAGTAAG-AACT-TAATAAGGACGTAG---T---A---AC---GGCATT-GACGTAGTATCAACGTAACTAAAACCTAG--TNGGGACTTCATTGACGTAGTACAAGCGTGGCGCTGAC-GGG-AA-GATTGCATGGCGTTCTCACTGC----ATTGTNAGGTG-----GCGGTAAGCGCGCGGTAAGCGCATGTTGAGATCTGAT--TGGT-----------C----------GTAGTAAG-----------GA-----CGTAGTAAG-----------AACGCATTG-GACGTGGT-A---CGCGCGT-ATCATGCGCGTGGTAA-GAAATTAGTGGGGACGTG-TTAGACGCAGTGAGAACC---TG-G---------CAG-GACGTAG-------TA-------AG----GACGTAGTATGAACTTG-AAAA-TTGCACA-TTT-TTTC-CATTTTGACCACGTCCCCGCTGCGTTCATCGAA-ATTTTCAGGACGCAGT-GCGGTCTTCATGGTCTTCGTCTGAGTGTGAGGGGGG
Reference ( gi|3 ) : GCCCCTCACATTCAG-------CCAC---G--TTCCCACTACGTCCTCTGCAAA-TTT-G-GTGGACGCAGTAAGAACTT----GTACA-----------ACGTAGTAG----------GAACGCAGAAG--------AAA-------------CCGATAAGAACGTGGAATGGTCTCCTTGGACTTTGAGAATGTGGTCAAACTTTGGATATGTT----AAAAAA---TGGAGTGAGGACGTGGTCGAATCAG-GACA------CAGTAAG-A-CT-TAATAAGGACGTAG---T---A---AC---GGCATT-GACGTAGTATCAACGTAACTAAAACCTAG--GAGGGATTTCATTAACGTAGTACAAGCGTCGCGCTGAC-GGG-AA-GATTGCATGGCGTTCTCACTGC----CTTCTCACATG-----GTTGTATGCGCGTTGTAAGCATGTGCTGAGATCTGAT--TGGT-----------C----------GTAGTAAG-----------GA-----CGTAGTAAG-----------AACACATTG-GACATGGTTATCATGCGCGTTATAATGCACGTGGTAA-GAAATTAGTGGGGACGTG-TTAGACACAGTGAGAACC---TG-G---------CAGTGACGTAG-------TA-------AG----GACGTAGTATCAACTTG-AAAA-TTGCACA-TTTGTTTC-CATGTTGACCACGCCCCCGATGCGTTCATCGAT-ATTTTCAGGACGCAGT-GCGGTCTTCATGGTCTTCGTCTGAGTGTGAGAGGGGA
gi|4 : CCTCTCACACTTAG-------CCAT---A--TTCCCACTTAGTCCTC-AAAAA-TTG-G-GTGGACGCAGTAAGAACTTACCTGTACA-----------ACATGGTAG----------GAATGCAGTAG--------AAA-------------CTGATAAAGACCTGGAATGGTTTCCATGGAC---------GTGGTCAGACTTTGGACATGTA----AAAAAAATATATAGTGAGGTCATGGTCATATTAG-AACG------CAGTAAG-AACT-TAATAAGGACGTAG---T---A---A---------T-AATG--GCATTAACCTAACTAAAAC-TAG--TCGGGGCTT-ATTGACATACTACAAGCATTGCCCTGAT-GGG-AAAGATTGCATGGCGTTGTCACTG---------------G-----ATTGTAAGTGTG--GTAAGCGCATGTTGAGATATGAT--TGGT-----------CATAGAAGATTGTAGTAAG-----------AA-----TGTAGTAAG-----------AACGCATTG-GATGTGGTGA----GCGCATGATCATGCGCATGGTCA-GAAATTAGTAAGGATGTG-TTAGACGCAGTGAGAACC---TG---------------------G-------TA-------AG----GACATAGTATGAACTTG-AAAA-TTGCACATTTTTTTTC-CATTTTGATTACATCCCCGCTGCATTCATCAAA-ATTTTCAGGACACAGT-GTGTTCTTCATG------GTCTAAGTGTGAGGGGG
gi|4 : cCCCCTCACACTTAGA------CCATGAAG--AACACACTGTGTC--CTGAAAATTTT-G-ATGAATGCAGCGGGGA--T----GTAataatagatttatg
gi|1 : ccctctcacacttagccatattcccacttagtcctcaaaaattgggtggacgcagtaagaacttacctgtacaacatggtaggaatgcagtagaaactgataaagacctggaatggtttccatggacgtggtcagactttggacatgtaaaaaaaatatatagtgaggtcatggtcatattagaacgcagtaagaacttaataaggacgtagtaataatggcattaacctaactaaaactagtcggggcttattgacatactacaagcattgccctgatgggaaagattgcatggcgttgtcactggattgtaagtgtggtaagcgcatgttgagatatgattggtcatagaagattgtagtaagaatgtagtaagaacgcattggatgtggtgagcgcatgatcatgcgcatggtcagaaattagtaaggatgtgttagacgcagtgagaacctggtaaggacatagtatgaacttgaaaattgcacattttttttccattttgatCTCCTCACACTCAG-------CTAC---G--TTCCAACTACGTCCTCAAAAAA-T---GAGTGGACGCAGTAAGAACTT----GTACAACGTAGTAGGAACGCAGTAGAAACCGATAAGGACGTGGAAAGGTCCGATAAAGACGTGGAGTGGTCCGATAAGGACGCGGAATTGTCTCAATGGACGTGGATAACGTGATCAAACTTTGAACATGTT----AAAAAAA--CGTAGTGAGGACGAGGTCGAATCAG-GACG------CAGTAAG-AACT-TACT---GACAT--------------T---GACATT-GACGTAGTATCAACGTAACTAAAACCTAG--TAAGGACTTTATTGACGTAGTACAAGTG-----------GGA-AA-GATTGCATGGCGATTTCGCTGCGTTGCTTCTGGGGTGTTAGCGTGGAAAGCGCGCGGTAAGCGCATGTTGAGATCTGAT--TGGT-----------C----------GTAGTAAG-----------AA-----CGTAGTAAGGATGTAGTAAAAACGCATTG-GACGTG-------TGTG----ATCATGCAGGTGGTAA-GAAATTAGTGGGGACGTGTTTAGACGCAGT-AAAACC---TG-G---------CAGGAATGTAA-------TA-------AG----GACAT--------------------------TTTTTTTC-AGTTTTGACCATGTCCCCACTGCGTTCATT-ATAATTTTTAGGACGCAGT-GCGGTCTTCATGATTTTTAT----GTGTGAGGGTGGgataatagatttatg
gi|8 : ccCTCCTCACACTCAGATGAAGACCAT---GAACCTCCACTACGTA--CTGAAAA-TTTCG-ATAAACGCAGTGCGGACGT----Ggggcgggggcatgaatctaattaaaacaatataaactgttgttactgataaaatg
gi|10 : tggtaagacattagtgtgtacgtgttaaacgcagtgagaacctggcagggacgtagtatgaacttgaaagttgcacattttttccattttgacCCCCTCACACTTAG-------CCAC---A--TTCCCACTATGTCCTCAAAAAA-TTG-G-GTGGATGCAGCAAGAACTT----GTACA-----------ATGTAACAG----------GAATGCAGTAG--------AAA-------------CCAATAAGGATGTGGAATTGTTTCCATTGACGGTGAGGACGTGGTCAAACTTTGGATATGCT----AAAAAggcatcatataattgaattacgtgtcaactgataatgtttctagagtagaata
gi|12 : CCCTTCACACTCAG-------CCAC-----------------TCCTCAAAAAA-TTG-G-GTG---------AGAACTT----GTACA-----------ACGTAGTAA----------GAACGCAGTAC--------AAA-------------CCGATAAGGACGTGGAGTGGTCTCCATGGAAGTGGAGGACGTGGTCAAACTTTGGACATATT----GAAAAA---
gi|2 : acCCCTCACACTCAG-------TCAC---G--TTCCCACTACATTCCCAAAAAA-TTG-T-GCGGATGCAGTAAGAAATT----GTACA-----------ACATAGTAG----------GAATGCAGTAG--------AAA-------------CCGATAAAGACACGGAGTAGTCTCCATGGATGCGGAGGACGTGGTCAAACTTTGGACATGTTA---AAAAAA---CGTAGTGAGGACATTGTCAAATCAG-AATG------TTGTAAG-AGCA-TAATAAGGACATAGTTAT---G---AT---GGTATT-GACATAGTATCAACGTAACTAAAACCTAG--AAGGGACTTCATTGACGTAGTACAAGCATGGCGCTGACAGGA-AA-GGTTGCATGGCATTCTCATTGC----ATTGTCAC-TG-----GCAAT-TG------GTAAGCAC-TATTGTGATCTGATAATGGTTAAAGCAAGAAT----------GTAGAAAG-----------GACGTACCGTAATAAA-----------AACGCAATA-AAAGTGAT----GTGCACATGATCATGCCTGTGGTAA-GAAATTAAAGGTTACATG-TTAGG---GGTCAAAGCCACACG-C---------CAATTACCT---------------------------GTGGTATGAACTTGAAAAA-TTGCATA-TTT-TTAC-CATTTTG-C-----------TGCGTTCATCAAA-GTTTTTAGGATGCAGA-GCTGTCTCCATGGTCTTTGTCTAAGTGTGTGGGGGGac
gi|5 : CCTTCACACTCAG-------CCAT---G--TTCCCACTTCGTCCTCAGAAAA-TTG-G-GTAGACGCAGTAAGAACTT----GTACA-----------ATGTAGT---------------------AG--------AAA-------------CCGATAAGGACGTGGAATGGTCTCCATGG---------ATGTGGTCAAATTTTTAATATGTTAAAAAAAAAA---TGCAGTGTGGACGTGGTTAAATCAG-GATG------CAGTAAG-A-ATGCGATAAGGATGTTG---T---A---ACTATGGCATT-GATGTATTATCAACATATCTAAAACCTAGTAGGGGGACTTCTTTGATGTAGTACAAGTGTGTTGCTGAC-GGGAAA-GACAGCTTGACGTTCTCACTGG----ATTGTAAGA-------GTGGTAAGAATGTGGTAAGCGCATGTTGAAATCTGAT--TGGTCGTAGAAA---C----------GTAGTAAT-----------GA-----CATAGAAAG-----------AACGCATTG-GACGTGGT----ACGCGTGT--TCATGCGCGTGATAA-GAAATTAGTGGGGACATG-TTAGATGCAGTAAAAcataaatgacaaattttatctgc
gi|9 : ACTCTG-------TCAC---G--TTACCACTACGCCGTCAAAAAA-TTT-A-GCGGATATAATAAGAAATT----GTACA-----------ACGTAGTAG----------GAATGCAGTAG--------AAA-------------CCGATAAGGATGTGGAATGGTCTCCATGG-CAGGGAGTATGTGGTTAAACTTTGGAAA---A----AAAAAA---CCTAGTGAGAACATG
gi|6 : --TTCCCACTACATCCTCAAAAAA-TTG-G-ATGGATTCAGTAAAAACTT----GTACA-----------ACATGGTAG----------GAATGCAGTAG--------AAA-------------CCGATAAGGACATGGAA---------TAGACGTGGAGGATGTGGTCAAACTTTGGACATGTTAA--AAAAAA---CATAGTGAGGACGTGGTCAGATCAG-GACG------CAGTAAGAA-CT-TAATAAGGACGTAG---T---AATGAC---AGCATT-GATGTAGTATCAACTCAACTAAAACCTAG--TTGGGACTTCATTGATGTGGTACAAATGTGGCGCCGGC-
gi|8 : T-G-TTAAACGCAGTGAGAACCT----G-GCAGGG--------ACGTAGTAT----------GAACatagtatgaacttgaaatttgtatagttttaccattttgaccacgctgcgttcatcgaaattttcaggacaaatagcagttttcatggtcttggtctggttgtgaggggg
gi|13 : tggtaagacattagtgtgtacgTGGTCGTAGTAAGAACGTA---GTAAAG----------ACGTAGTAA----------GAACGCAttgaaagttgcacattttttccattttgaccacgtccgcactgcgtttatcgaaattttcagtacgtagtggaggttcatggtcttcatctgagtgtgaggagggcatcatataattgaattacgtgtcaactgataatgtttctagagtagaata
gi|11 : cgtggtaagcgcgtgttgcgatctgatTTGGATGTGAT----GAGAAA---TT-AGTGGGGATGTGTTTGAAGCAGTGAGAACCTGGCAG--GG-A-CA-TAGTAAGGACTTAG---T---A---ttggatgtggtgcgcgcatcatcatgtgcgcggtaagaaattagtggggacgtg
gi|16 : gaatgtagtaagtacgtagcaagaatgcaTGAAGACGTGGTCGAATCGG-GACG------CAGTAAGAA-CT-GAATAAGGACCTAA---T---A---Atgaacttgaaaatttgcatatttttaccacgcaccgctgc
gi|13 : atG-GTCG------TAGTAAG-AACG-TAGTAAAGACGTAG---TAAGA---AC----GCATTGGATGTGGT
gi|13 : cgtggtaagcgcgtgttgcgatctgattCGTGGTAAGCGCGTGTTGCGATCTGAT--TGGT-----------C----------GTAGTAAGAACGTAGTAAAGA-----CGTAGTAAG-----------AACGCATTG-GATGTGGT----GCGCGCATCATCATGTGCGCGGTAA-GAAATTAGTGGGGACGTG-gcgcgcatcatcatgtgcgcggtaagaaattagtggggacgtg
gi|6 : -----------C----------ATAGTGAG-----------GA-----CGTGGTCAG-----------ATCA----G-GACGCAGTAA----GAACTTAATAAGG-ACGTAGTAATGACAGCATTGATGTAGTA-TCA-ACTCAACTAAAACC---TA-GTTGGGACTTCATTGATGTGG-------TACAAATGTGGCGCCGGCATAGTATGAACTTG-AAAT-TTGTATA-GTT-TTAC-CATTTTGACCACGC------TGCGTTCATCGAA-ATTTTCAGGACAAATA-GCAGTTTTCATGGTCTTGGTCTGGTTGTGAGGGGG
gi|11 : ttcccactacatcctcaaaaaattggatggattcagtaaaaacttgtacaacatggtaggaatgcagtagaaaccgataaggacatggaatagacgtggaggatgtggtcaaactttggacatgttaaaaaaaa----------GTAGTAAG-----------TA-----CGTAGCAAG-----------AATGCAT-------TGG---------------------ATGTGATGA-GAAATTAGTGGGGATGTG-TTTGAAGCAGTGAGAACC---TG-G---------CAGGGACATAG-------TA-------AG----GACTTAGTATGAACTTG-AAAATTTGCATA-TTT-TTAC-CACG
gi|7 : gaatAAG-----------CACATGTTGAGATCTG---ATC-TGCATG--ATCATGCATGTGTTAA-GAAATTAATGGAGAAGTG-TTAGACACACTGAGAACC---TA-G---------CAG-------------------------G----GATGTAGTATGAACTTG-AAAA-TTGCACA-TT--TTTC-CATTTTGTCCTTGTCCCCGCTGTATTCATCAAA-ATTTCCAGGACTTAGT-GTGGTCTTTATGTTCTTGGCTCGAGTATcaccgctgc
gi|8 : TGGTAA-GACATTAGTGTGTACGTG-TTAAACGCAGTGAGAACC---TG-G---------CAG-------------------------G----GACGTAGTATGAACTTG-AAAG-TTGCACA-TTT-TTTC-CATTTTGACCACGTCCGCACTGCGTTTATCGAA-ATTTTCAGTACGTAGTGGAGG--TTCATGGTCTTCATCTGAGTGTGAGGAGGGtggggtcataacataaaatataagttgtatcagagacataat
gi|5 : TAGACGCAGTAAGAACT---TGTA---------CAATGTAGTAGAAACCGATA-------AG----GACGTGGAATcatcatataattgaattacgtgtcaactgataatgtttctagagtagaata
gi|12 : ccttcacactcagccatgttcccacttcgtcctcagaaaattgggGTGAGAACT---TGTA---------CA---ACGTAG-------TA-------AG----AACGCAGTACAAACggtctccatggatgtggtcaaatttttaatatgttaaaaaaaaaatgcagtgtggacgtggttaaatcaggatgcagtaagaatgcgataaggatgttgtaactatggcattgatgtattatcaacatatctaaaacctagtagggggacttctttgatgtagtacaagtgtgttgctgacgggaaagacagcttgacgttctcactggattgtaagagtggtaagaatgtggtaagcgcatgttgaaatctgattggtcgtagaaacgtagtaatgacatagaaagaacgcattggacgtggtacgcgtgttcatgcgcgtgataagaaattagtggggacatgttagatgcagtaaaa
gi|13 : accccttcacactcagccactcctcaaaaaattggACGTAG-------TA-------AA----GACGTAGTAcgataaggacgtggagtggtctccatggaagtggaggacgtggtcaaactttggacatattgaaaaaac
gi|15 : cgtggtaagcgcgtgttgcgatctgattggtcgtagtaagaA-------AN----NNNNNNNNNTGAACTTG-AAAA-TTGCAC--TTT-TTTCACATTTTGACCACGTCCCTGCTGCTGTCATCGAA-ATTTTCAGGAAGCAGT-ACCGTCTTCATGGTCTTTGTCTGTGTGTagaacgcattggatgtggtgcgcgcatcatcatgtgcgcggtaagaaattagtggggacgtg
gi|14 : aCACGTCCCCGCTGCGTTCATGGAA-ATGTTCAGGACGCAGA-GCGATCTTCATGGTATT-------GTGTGAGGGGGt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TAGGGGTCAAAAACACGTGCCAATTACCTGTGATATCATGAACAAAAT
Unaligned ( gi|18 ): TATATTTGTAGTGGTCAAAGCCACACACCAATTACCTGTGGATGAA
Alignments
lowQualScore : 222222222222 1111111 111111 111 111111 1111111 55555555555555555555555555 111 1 66666666666666666666666666 7777777777777777777777 33333333333 22222222222 44444444444444444 5555555555555555
lowQualScore : 0 9999 1 888 0 222222222222 4444444 555555 333 444444 1 0 4444444 33333333333333333333333333 1 000 1 2 8 6 66666666666666666666666666 3 4 99 3333333333333333333333 66666666666 11111111111 4 4 1 22222222222222222 22 0 4 4 1 1 5555555555555555 999 4 4 4 66 2 4 4 4 0 9 0 0
lowQualScore : . .... . ... . ............ ....... ...... ... ...... . . ....... .......................... . ... . . . . .......................... . . .. ...................... ........... ........... . . . ................. .. . . . . . ................ ... . . . .. . . . . . . . .
lowQualScore : 2 4444 7 000 7 888888888888 4444444 888888 888 444444 4 1 7777777 00000000000000000000000000 0 222 0 5 0 0 66666666666666666666666666 3 2 22 5555555555555555555555 22222222222 11111111111 4 4 7 22222222222222222 88 1 0 0 9 9 0000000000000000 222 4 4 4 11 2 4 7 4 1 2 1 9
consensus : NCCCCTCACACTCAGCCACGTTCCCACTACGTCCTCAAAAAATTGGGTGGACGCAGTAAGAACTT----GTACAACGTAGTAGGAACGCAGTAGAAACCGATAAGGACGTGGAATGGTCTCCAT--GGACGTGG------------AGGACGTGG-------TCAAACTTTGGACATGTT----AAAAAA---CGTAGTGA------GGACGTGGTCAAATCAGGACGCAGTAAGAAC----TT-AATAAGGACGTAGT---A---A--------------C---GGCATTGACGTAGTATCAACGTAACTAAAACCTAGT--NGGGACTTCATTGACGTAGTACAAGCGTGGCGCTGACGGG-AAAGATTGCATGGCGTTCTCACTGCATTG----TNAG-TG-----GCGGTAAGCGCGTGGTAAGCGCGTGTTGAGATCTGAT--TGGT-----------C----------GTAGTAAGGA-----------CGTAGTAAG-----------AAC-GCATTG-GACGTGGT----GCGCGCG-T-ATCATGCGCGTGGTAAGAAATTAGTGGGGACGT-G-TTAGACGCAGTGAGAACCTGGCA-G-G-ACGTA-TAAGGAC--GTAGTATGAACTTG-AAAA-TTGCACATTT-T--TTC-CATTTTGACCACGTCCCCGCTGCGTTCATCGAAATTTTCAGGACGCAGT-GCGGTCTTCATGGTCTTCGTCTGAGTGTGAGGGGGG
Reference ( family-951 ) : NCCCCTCACACTCAGCCACGTTCCCACTACGTCCTCAAAAAATTGGGTGGACGCAGTAAGAACTT----GTACAACGTAGTAGGAACGCAGTAGAAACCGATAAGGACGTGGAATGGTCTCCAT--GGACGTGG------------AGGACGTGG-------TCAAACTTTGGACATGTT----AAAAAA---CGTAGTGA------GGACGTGGTCGAATCAGGACGCAGTAAGAAC----TT-AATAAGGACGTAGT---A---A--------------C---GGCATTGACGTAGTATCAACGTAACTAAAACCTAGT--NGGGACTTCATTGACGTAGTACAAGCGTGGCGCTGACGGG-AA-GATTGCATGGCGTTCTCACTGCATTG----TNAGGTG-----GCGGTAAGCGCGCGGTAAGCGCATGTTGAGATCTGAT--TGGT-----------C----------GTAGTAAGGA-----------CGTAGTAAG-----------AAC-GCATTG-GACGTGGT----ACGCGCG-T-ATCATGCGCGTGGTAAGAAATTAGTGGGGACGT-G-TTAGACGCAGTGAGAACCTGGCA-G-G-ACGTAGTAAGGAC--GTAGTATGAACTTG-AAAA-TTGCACATTT-T--TTC-CATTTTGACCACGTCCCCGCTGCGTTCATCGAAATTTTCAGGACGCAGT-GCGGTCTTCATGGTCTTCGTCTGAGTGTGAGGGGGG
gi|1 : CTCCTCACACTCAGCTACGTTCCAACTACGTCCTCAAAAAAT-GAGTGGACGCAGTAAGAACTT----GTACAACGTAGTAGGAACGCAGTAGAAACCGATAAGGACGTGGAAAGGTC-CGATAAAGACGTGGAGTGGTCCGATAAGGACGCGGAATTGTCTCAA----TGGACGTG-------GATAA---CGTGATCAAACTTTGAACAT-GTTAAA--AAAACGTAGTGAGGACGAGGTCGAATCAGGACGCAGT---A---AGAACTTACTGACATT---GACATTGACGTAGTATCAACGTAACTAAAACCTAGT--AAGGACTTTATTGACGTAGTACAAGTG----------GGA-AA-GATTGCATGGCGATTTCGCTGCGTTGCTTCTGGGGTGTTAGCGTGGAAAGCGCGCGGTAAGCGCATGTTGAGATCTGAT--TGGT-----------C----------GTAGTAAGAA-----------CGTAGTAAGGATGTAGTAAAAAC-GCATTG-GACGTG-------TGTG-----ATCATGCAGGTGGTAAGAAATTAGTGGGGACGT-GTTTAGACGCAGT-AAAACCTGGCA-G-GAATGTAATAAGGAC--------------------A-TT-----TTT-T--TTC-AGTTTTGACCATGTCCCCACTGCGTTCATTATAATTTTTAGGACGCAGT-GCGGTCTTCATGATTTTTAT----GTGTGAGGGTGG
gi|10 : ccCCCCTCACACTTAGCCACATTCCCACTATGTCCTCAAAAAATTGGGTGGATGCAGCAAGAACTT----GTACAATGTAACAGGAATGCAGTAGAAACCAATAAGGATGTGGAATTGTTTCCAT--TGACGGTG------------AGGACGTGG-------TCAAACTTTGGATATGCT----AAAAAgggcgggggcatgaatctaattaaaacaatataaactgttgttactgataaaatg
gi|11 : ----------GTAGTAAGTA-----------CGTAGCAAG-----------AAT-GCATTG-GATGTG-------------------ATG---------AGAAATTAGTGGGGATGT-G-TTTGAAGCAGTGAGAACCTGGCAGG-G-ACATAGTAAGGAC--TTAGTATGAACTTG-AAAATTTGCATATTT-T--T----------ACCACG-CACCGCTGC
gi|12 : gaatCCCTTCACACTCAGCCAC------------TCCTCAAAAAATTGGGTG---------AGAACTT----GTACAACGTAGTAAGAACGCAGTACAAACCGATAAGGACGTGGAGTGGTCTCCAT--GGAAGTGG------------AGGACGTGG-------TCAAACTTTGGACATATT----GAAAAA---
gi|13 : acCGTGGTAAGCGCGTGTTGCGATCTGAT--TGGT-----------C----------GTAGTAAGAACGTAGTAAAGACGTAGTAAG-----------AAC-GCATTG-GATGTGGT----GCGCGCA-TCATCATGTGCGCGGTAAGAAATTAGTGGGGACGT-G-ac
gi|14 : CACGTCCCCGCTGCGTTCATGGAAATGTTCAGGACGCAGA-GCGATCTTCATGGTATT-------GTGTGAGGGGG
gi|15 : aaAANNNN--NNNNNNTGAACTTG-AAAA-TTGCAC-TTT-T--TTCACATTTTGACCACGTCCCTGCTGCTGTCATCGAAATTTTCAGGAAGCAGT-ACCGTCTTCATGGTCTTTGTCTGTGTGTacattaaatataaaaatcaacacagcattacgttatttgatataaaata
gi|16 : aTGA------AGACGTGGTCGAATCGGGACGCAGTAAGAAC----TG-AATAAGGACCTAAT---A---A--------------t
gi|2 : atCCCTCACACTCAGTCACGTTCCCACTACATTCCCAAAAAATTGTGCGGATGCAGTAAGAAATT----GTACAACATAGTAGGAATGCAGTAGAAACCGATAAAGACACGGAGTAGTCTCCAT--GGATGCGG------------AGGACGTGG-------TCAAACTTTGGACATGTT----AAAAAAA--CGTAGTGA------GGACATTGTCAAATCAGAATGTTGTAAGAGC----AT-AATAAGGACATAGTTATG---A--------------T---GGTATTGACATAGTATCAACGTAACTAAAACCTAGA--AGGGACTTCATTGACGTAGTACAAGCATGGCGCTGACAGG-AAAGGTTGCATGGCATTCTCATTGCATTG----TCAC-TG-----GCAAT-------TGGTAAGCAC-TATTGTGATCTGATAATGGTTAAAGCAAGAAT----------GTAGAAAGGACGTAC------CGTAATAAA-----------AAC-GCAATA-AAAGTGAT----GTGCACA-TGATCATGCCTGTGGTAAGAAATTAAAGGTTACAT-G-TTAGG---GGTCAAAGCC--ACA-C-G-CC-----AATTACCTGTGGTATGAACTTGAAAAA-TTGCATATTT-T--TAC-CATTTT------------GCTGCGTTCATCAAAGTTTTTAGGATGCAGA-GCTGTCTCCATGGTCTTTGTCTAAGTGTGTGGGGGG
gi|3 : CCCCTCACATTCAGCCACGTTCCCACTACGTCCTCTGCAAATTTGGTGGACGCAGTAAGAACTT----GTACAACGTAGTAGGAACGCAGAAGAAACCGATAAGAACGTGGAATGGTCTCCTT--GGACTTTG------------AGAATGTGG-------TCAAACTTTGGATATGTT----AAAAAA---TGGAGTGA------GGACGTGGTCGAATCAGGACACAGTAAGA-C----TT-AATAAGGACGTAGT---A---A--------------C---GGCATTGACGTAGTATCAACGTAACTAAAACCTAGG--AGGGATTTCATTAACGTAGTACAAGCGTCGCGCTGACGGG-AA-GATTGCATGGCGTTCTCACTGCCTTC----TCACATG-----GTTGTATGCGCGTTGTAAGCATGTGCTGAGATCTGAT--TGGT-----------C----------GTAGTAAGGA-----------CGTAGTAAG-----------AAC-ACATTG-GACATGGTTATCATGCGCGTT-ATAATGCACGTGGTAAGAAATTAGTGGGGACGT-G-TTAGACACAGTGAGAACCTGGCA-GTG-ACGTAGTAAGGAC--GTAGTATCAACTTG-AAAA-TTGCACATTTGT--TTC-CATGTTGACCACGCCCCCGATGCGTTCATCGATATTTTCAGGACGCAGT-GCGGTCTTCATGGTCTTCGTCTGAGTGTGAGAGGGGcataaatgacaaattttatctgc
gi|4 : gCCTCTCACACTTAGCCATATTCCCACTTAGTCCTCAAAAA-TTGGGTGGACGCAGTAAGAACTTACCTGTACAACATGGTAGGAATGCAGTAGAAACTGATAAAGACCTGGAATGGTTTCCAT--GGACGTGG----------------------------TCAGACTTTGGACATGTA----AAAAAAATATATAGTGA------GGTCATGGTCATATTAGAACGCAGTAAGAAC----TT-AATAAGGACGTAGT---A---A-----------------------TAATG--GCATTAACCTAACTAAAAC-TAGT--CGGGGCTT-ATTGACATACTACAAGCATTGCCCTGATGGG-AAAGATTGCATGGCGTTGTCACTGGATTG----TAAG------------------TGTGGTAAGCGCATGTTGAGATATGAT--TGGT-----------CATAGAAGATTGTAGTAAGAA-----------TGTAGTAAG-----------AAC-GCATTG-GATGTGGT----GAGCGCA-TGATCATGCGCATGGTCAGAAATTAGTAAGGATGT-G-TTAGACGCAGTGAGAACCTGG-------------TAAGGAC--ATAGTATGAACTTG-AAAA-TTGCACATTT-TTTTTC-CATTTTGATTACATCCCCGCTGCATTCATCAAAATTTTCAGGACACAGT-GTGTTCTTCATG------GTCTAAGTGTGAGGGGGa
gi|5 : cCCTTCACACTCAGCCATGTTCCCACTTCGTCCTCAGAAAATTGGGTAGACGCAGTAAGAACTT----GTACAATGT-----------AGTAGAAACCGATAAGGACGTGGAATGGTCTCCAT-----------------------GGATGTGG-------TCAAATTTTTAATATGTTAAAAAAAAAA---TGCAGTGT------GGACGTGGTTAAATCAGGATGCAGTAAGAAT----GC-GATAAGGATGTTGT---A---A--------------CTATGGCATTGATGTATTATCAACATATCTAAAACCTAGTAGGGGGACTTCTTTGATGTAGTACAAGTGTGTTGCTGACGGGAAA-GACAGCTTGACGTTCTCACTGGATTG----TAAG--A-----GTGGTAAGAATGTGGTAAGCGCATGTTGAAATCTGAT--TGGTCGTAGAAA---C----------GTAGTAATGA-----------CATAGAAAG-----------AAC-GCATTG-GACGTGGT----ACGCGTG-T--TCATGCGCGTGATAAGAAATTAGTGGGGACAT-G-TTAGATGCAGTAAAAataatagatttatg
gi|6 : TTCCCACTACATCCTCAAAAAATTGGATGGATTCAGTAAAAACTT----GTACAACATGGTAGGAATGCAGTAGAAACCGATAAGGACATGGA---------AT--AGACGTGG------------AGGATGTGG-------TCAAACTTTGGACATGTTAA--AAAAAA---CATAGTGA------GGACGTGGTCAGATCAGGACGCAGTAAGAAC----TT-AATAAGGACGTAGT---AATGA--------------C---AGCATTGATGTAGTATCAACTCAACTAAAACCTAGT--TGGGACTTCATTGATGTGGTACAAATGTGGCGCCGGC
gi|6 : TAATAAGGA-----------CGTAGTAAT-----------GACAGCATTG--ATGTAGT----ATCAAC-----TCA---AC----TAA-AACCTAGTTGGGACTTCA-TT-GATGTGGTACAAATGTGGC----G-CCG--------GC--ATAGTATGAACTTG-AAAT-TTGTATAGTT-T--TAC-CATTTTGACCACG------CTGCGTTCATCGAAATTTTCAGGACAAATA-GCAGTTTTCATGGTCTTGGTCTGGTTGTGAGGGGGatagtatgaacttgaaatttgtatagttttaccattttgaccacgctgcgttcatcgaaattttcaggacaaatagcagttttcatggtcttggtctggttgtgaggggg
gi|7 : ttcccactacatcctcaaaaaattggatggattcagtaaaaacttgtacaacatggtaggaatgcagtagaaaccgataaggacatggaatagacgtggaggatgtggtcaaactttggacatgttaaaaaaaacatagtgaggacgtggtcagatcaggacgcagtaagaactAAG-----------CAC-ATGTTGAGATCTGAT----CTGCATG---ATCATGCATGTGTTAAGAAATTAATGGAGAAGT-G-TTAGACACACTGAGAACCTAGCA-G-G-----------GAT--GTAGTATGAACTTG-AAAA-TTGCACATTT-T---TC-CATTTTGTCCTTGTCCCCGCTGTATTCATCAAAATTTCCAGGACTTAGT-GTGGTCTTTATGTTCTTGGCTCGAGTATTGGGG
gi|8 : TGGTAAGACATTAGTGTGTACGT-G-TTAAACGCAGTGAGAACCTGGCA-G-G-----------GAC--GTAGTATGAACTTG-AAAG-TTGCACATTT-T--TTC-CATTTTGACCACGTCCGCACTGCGTTTATCGAAATTTTCAGTACGTAGTGGAGG--TTCATGGTCTTCATCTGAGTGTGAGGAGGGtcataacataaaatataagttgtatcagagacataat
gi|9 : ACTCTGTCACGTTACCACTACGCCGTCAAAAAATTTAGCGGATATAATAAGAAATT----GTACAACGTAGTAGGAATGCAGTAGAAACCGATAAGGATGTGGAATGGTCTCCAT--GG-CAGGG------------AGTATGTGG-------TTAAACTTTGGAAA---A----AAAAAA---CCTAGTGA------GAACATGcatcatataattgaattacgtgtcaactgataatgtttctagagtagaata
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TAGGGGTCAAAAACACGTGCCAATTACCTGTGATATCATGAACAAAAT
Unaligned ( gi|18 ): TATATTTGTAGTGGTCAAAGCCACACACCAATTACCTGTGGATGAA
Alignments
lowQualScore : 222222222222 1111111 111111 111 111111 1111111 55555555555555555555555555 111 666666666666666666666666666 7777777777777777777777 33333333333 22222222222 44444444444444 777777777777777
lowQualScore : 0 9999 1 888 0 222222222222 4444444 555555 333 444444 0 4444444 33333333333333333333333333 1 000 1 3 2 0 222222222222222222222222222 6 99 3333333333333333333333 66666666666 11111111111 4 4 1 55555555555555 3 4 4 1 1 666666666666666 66 4 4 4 66 2 4 4 4 0 9 0 0
lowQualScore : . .... . ... . ............ ....... ...... ... ...... . ....... .......................... . ... . . . . ........................... . .. ...................... ........... ........... . . . .............. . . . . . ............... .. . . . .. . . . . . . . .
lowQualScore : 2 4444 7 000 7 888888888888 4444444 888888 888 444444 1 7777777 00000000000000000000000000 0 222 0 7 5 8 888888888888888888888888888 3 22 5555555555555555555555 22222222222 11111111111 4 4 7 99999999999999 7 0 0 9 9 888888888888888 11 4 4 4 11 2 4 7 4 1 2 1 9
consensus : NCCCCTCACACTCAGCCACGTTCCCACTACGTCCTCAAAAAATTGGGTGGACGCAGTAAGAACTT----GTACAACGTAGTAGGAACGCAGTAGAAACCGATAAGGACGTGGAATGGTCTCCAT--GGACGTGG------------AGGACGTGG-------TCAAACTTTGGACATGTT----AAAAAA---CGTAGTGA------GGACGTGGTCAAATCAGGACGCAGTAAGAAC----TT-AATAAGGACGTAGT---A---A--------------C---GGCATTGACGTAGTATCAACGTAACTAAAACCTAGT--NGGGACTTCATTGACGTAGTACAAGCGTGGCGCTGACGGGAAAGATTGCATGGCGTTCTCACTGCATTGT-----NA-GTG-----GCGGTAAGCGCGTGGTAAGCGCGTGTTGAGATCTGAT--TGGT-----------C----------GTAGTAAGGA-----------CGTAGTAAG-----------AAC-GCATTG-GACGTGGT----GCGCGCG-T-ATCATGCGCGTGGTAAGAAATTAGTGGGGACGT-G-TTAGACGCAGTGAGAACCTGGCA-G-GAC----TAAGGAC--GTAGTATGAACTTG-AAAA-TTGCACATTT-T--TTC-CATTTTGACCACGTCCCCGCTGCGTTCATCGAAATTTTCAGGACGCAGT-GCGGTCTTCATGGTCTTCGTCTGAGTGTGAGGGGGG
Reference ( family-951 ) : NCCCCTCACACTCAGCCACGTTCCCACTACGTCCTCAAAAAATTGGGTGGACGCAGTAAGAACTT----GTACAACGTAGTAGGAACGCAGTAGAAACCGATAAGGACGTGGAATGGTCTCCAT--GGACGTGG------------AGGACGTGG-------TCAAACTTTGGACATGTT----AAAAAA---CGTAGTGA------GGACGTGGTCAAATCAGGACGCAGTAAGAAC----TT-AATAAGGACGTAGT---A---A--------------C---GGCATTGACGTAGTATCAACGTAACTAAAACCTAGT--NGGGACTTCATTGACGTAGTACAAGCGTGGCGCTGACGGGAAAGATTGCATGGCGTTCTCACTGCATTGT-----NA-GTG-----GCGGTAAGCGCGTGGTAAGCGCGTGTTGAGATCTGAT--TGGT-----------C----------GTAGTAAGGA-----------CGTAGTAAG-----------AAC-GCATTG-GACGTGGT----GCGCGCG-T-ATCATGCGCGTGGTAAGAAATTAGTGGGGACGT-G-TTAGACGCAGTGAGAACCTGGCA-G-GACGTA-TAAGGAC--GTAGTATGAACTTG-AAAA-TTGCACATTT-T--TTC-CATTTTGACCACGTCCCCGCTGCGTTCATCGAAATTTTCAGGACGCAGT-GCGGTCTTCATGGTCTTCGTCTGAGTGTGAGGGGGG
gi|1 : CTCCTCACACTCAGCTACGTTCCAACTACGTCCTCAAAAAAT-GAGTGGACGCAGTAAGAACTT----GTACAACGTAGTAGGAACGCAGTAGAAACCGATAAGGACGTGGAAAGGTC-CGATAAAGACGTGGAGTGGTCCGATAAGGACGCGGAATTGTCTCAA----TGGACGTG-------GATAA---CGTGATCAAACTTTGAACAT-GTTAAA--AAAACGTAGTGAGGACGAGGTCGAATCAGGACGCAGT---A---AGAACTTACTGACATT---GACATTGACGTAGTATCAACGTAACTAAAACCTAGT--AAGGACTTTATTGACGTAGTACAAG-----------TGGGAAAGATTGCATGGCGATTTCGCTGCGTTGCTTCTGGG-GTGTTAGCGTGGAAAGCGCGCGGTAAGCGCATGTTGAGATCTGAT--TGGT-----------C----------GTAGTAAGAA-----------CGTAGTAAGGATGTAGTAAAAAC-GCATTG-GACGT-GT----GTG-------ATCATGCAGGTGGTAAGAAATTAGTGGGGACGT-GTTTAGACGCAGT-AAAACCTGGCA-G-GA----------AT--GTAATAAGGAC-------A-TT-----TTT-T--TTC-AGTTTTGACCATGTCCCCACTGCGTTCATTATAATTTTTAGGACGCAGT-GCGGTCTTCATGATTTTTAT----GTGTGAGGGTGG
gi|10 : ccCCCCTCACACTTAGCCACATTCCCACTATGTCCTCAAAAAATTGGGTGGATGCAGCAAGAACTT----GTACAATGTAACAGGAATGCAGTAGAAACCAATAAGGATGTGGAATTGTTTCCAT--TGACGGTG------------AGGACGTGG-------TCAAACTTTGGATATGCT----AAAAAgggcgggggcatgaatctaattaaaacaatataaactgttgttactgataaaatg
gi|11 : ----------GTAGTAAGTA-----------CGTAGCAAG-----------AAT-GCATTG-GATGTGAT----G------------------------AGAAATTAGTGGGGATGT-G-TTTGAAGCAGTGAGAACCTGGCAGG-GACATAGTAAGGAC--TTAGTATGAACTTG-AAAATTTGCATATTT-T--T----------ACCACG-CACCGCTGC
gi|12 : gaatCCCTTCACACTCAGCCAC------------TCCTCAAAAAATTGGGTG---------AGAACTT----GTACAACGTAGTAAGAACGCAGTACAAACCGATAAGGACGTGGAGTGGTCTCCAT--GGAAGTGG------------AGGACGTGG-------TCAAACTTTGGACATATT----GAAAAA---
gi|13 : acCGTGGTAAGCGCGTGTTGCGATCTGAT--TGGT-----------C----------GTAGTAAGAACGTAGTAAAGACGTAGTAAG-----------AAC-GCATTG-GATGTGGT----GCGCGCA-TCATCATGTGCGCGGTAAGAAATTAGTGGGGACGT-G-ac
gi|14 : CACGTCCCCGCTGCGTTCATGGAAATGTTCAGGACGCAGA-GCGATCTTCATGGTATT-------GTGTGAGGGGG
gi|15 : aaAANNNN--NNNNNNTGAACTTG-AAAA-TTGCAC-TTT-T--TTCACATTTTGACCACGTCCCTGCTGCTGTCATCGAAATTTTCAGGAAGCAGT-ACCGTCTTCATGGTCTTTGTCTGTGTGTacattaaatataaaaatcaacacagcattacgttatttgatataaaata
gi|16 : aTGA------AGACGTGGTCGAATCGGGACGCAGTAAGAAC----TG-AATAAGGACCTAAT---A---A--------------t
gi|2 : atCCCTCACACTCAGTCACGTTCCCACTACATTCCCAAAAAATTGTGCGGATGCAGTAAGAAATT----GTACAACATAGTAGGAATGCAGTAGAAACCGATAAAGACACGGAGTAGTCTCCAT--GGATGCGG------------AGGACGTGG-------TCAAACTTTGGACATGTT----AAAAAAA--CGTAGTGA------GGACATTGTCAAATCAGAATGTTGTAAGAGC----AT-AATAAGGACATAGTTATG---A--------------T---GGTATTGACATAGTATCAACGTAACTAAAACCTAGA--AGGGACTTCATTGACGTAGTACAAGCATGGCGCTGACAGGAAAGGTTGCATGGCATTCTCATTGCATTGT-----CA-CTG-----GCAAT-------TGGTAAGCAC-TATTGTGATCTGATAATGGTTAAAGCAAGAAT----------GTAGAAAGGACGTAC------CGTAATAAA-----------AAC-GCAATA-AAAGTGAT----GTGCACA-TGATCATGCCTGTGGTAAGAAATTAAAGGTTACAT-G-TTAGG---GGTCAAAGCC--ACA-C-GCC-----AATTACCTGTGGTATGAACTTGAAAAA-TTGCATATTT-T--TAC-CATTTT------------GCTGCGTTCATCAAAGTTTTTAGGATGCAGA-GCTGTCTCCATGGTCTTTGTCTAAGTGTGTGGGGGG
gi|3 : CCCCTCACATTCAGCCACGTTCCCACTACGTCCTCTGCAAATTTGGTGGACGCAGTAAGAACTT----GTACAACGTAGTAGGAACGCAGAAGAAACCGATAAGAACGTGGAATGGTCTCCTT--GGACTTTG------------AGAATGTGG-------TCAAACTTTGGATATGTT----AAAAAA---TGGAGTGA------GGACGTGGTCGAATCAGGACACAGTAAG-AC----TT-AATAAGGACGTAGT---A---A--------------C---GGCATTGACGTAGTATCAACGTAACTAAAACCTAGG--AGGGATTTCATTAACGTAGTACAAGCGTCGCGCTGACGGG-AAGATTGCATGGCGTTCTCACTGCCTTCT-----CACATG-----GTTGTATGCGCGTTGTAAGCATGTGCTGAGATCTGAT--TGGT-----------C----------GTAGTAAGGA-----------CGTAGTAAG-----------AAC-ACATTG-GACATGGTTATCATGCGCGTT-ATAATGCACGTGGTAAGAAATTAGTGGGGACGT-G-TTAGACACAGTGAGAACCTGGCA-GTGACGTAGTAAGGAC--GTAGTATCAACTTG-AAAA-TTGCACATTTGT--TTC-CATGTTGACCACGCCCCCGATGCGTTCATCGATATTTTCAGGACGCAGT-GCGGTCTTCATGGTCTTCGTCTGAGTGTGAGAGGGGcataaatgacaaattttatctgc
gi|4 : gCCTCTCACACTTAGCCATATTCCCACTTAGTCCTCAAAAA-TTGGGTGGACGCAGTAAGAACTTACCTGTACAACATGGTAGGAATGCAGTAGAAACTGATAAAGACCTGGAATGGTTTCCAT--GGACGTGG----------------------------TCAGACTTTGGACATGTA----AAAAAAATATATAGTGA------GGTCATGGTCATATTAGAACGCAGTAAGAAC----TT-AATAAGGACGTAGT---A---A-----------------------TAATG--GCATTAACCTAACTAAAAC-TAGT--CGGGGCTT-ATTGACATACTACAAGCATTGCCCTGATGGGAAAGATTGCATGGCGTTGTCACTGGATTGT-----AA-GTG-----------------TGGTAAGCGCATGTTGAGATATGAT--TGGT-----------CATAGAAGATTGTAGTAAGAA-----------TGTAGTAAG-----------AAC-GCATTG-GATGTGGT----GAGCGCA-TGATCATGCGCATGGTCAGAAATTAGTAAGGATGT-G-TTAGACGCAGTGAGAACCTGG------------TAAGGAC--ATAGTATGAACTTG-AAAA-TTGCACATTT-TTTTTC-CATTTTGATTACATCCCCGCTGCATTCATCAAAATTTTCAGGACACAGT-GTGTTCTTCATG------GTCTAAGTGTGAGGGGGa
gi|5 : cCCTTCACACTCAGCCATGTTCCCACTTCGTCCTCAGAAAATTGGGTAGACGCAGTAAGAACTT----GTACAATGT-----------AGTAGAAACCGATAAGGACGTGGAATGGTCTCCAT-----------------------GGATGTGG-------TCAAATTTTTAATATGTTAAAAAAAAAA---TGCAGTGT------GGACGTGGTTAAATCAGGATGCAGTAAGAAT----GC-GATAAGGATGTTGT---A---A--------------CTATGGCATTGATGTATTATCAACATATCTAAAACCTAGTAGGGGGACTTCTTTGATGTAGTACAAGTGTGTTGCTGACGGGAAAGACAGCTTGACGTTCTCACTGGATTGT-----AA-G-A-----GTGGTAAGAATGTGGTAAGCGCATGTTGAAATCTGAT--TGGTCGTAGAAA---C----------GTAGTAATGA-----------CATAGAAAG-----------AAC-GCATTG-GACGTGGT----ACGCGTG-T--TCATGCGCGTGATAAGAAATTAGTGGGGACAT-G-TTAGATGCAGTAAAAataatagatttatg
gi|6 : TTCCCACTACATCCTCAAAAAATTGGATGGATTCAGTAAAAACTT----GTACAACATGGTAGGAATGCAGTAGAAACCGATAAGGACATGGA---------AT--AGACGTGG------------AGGATGTGG-------TCAAACTTTGGACATGTTAA--AAAAAA---CATAGTGA------GGACGTGGTCAGATCAGGACGCAGTAAGAAC----TT-AATAAGGACGTAGT---AATGA--------------C---AGCATTGATGTAGTATCAACTCAACTAAAACCTAGT--TGGGACTTCATTGATGTGGTACAAATGTGGCGCCGGC
gi|6 : TAATAAGGA-----------CGTAGTAAT-----------GACAGCATTG--ATGTAGT--------------ATCA-ACTCA-ACTAA-AACCTAGTTGGGACTTCA-TT-GATGTGGTACAAATGTGGC----GCCG--------GC--ATAGTATGAACTTG-AAAT-TTGTATAGTT-T--TAC-CATTTTGACCACG------CTGCGTTCATCGAAATTTTCAGGACAAATA-GCAGTTTTCATGGTCTTGGTCTGGTTGTGAGGGGGatagtatgaacttgaaatttgtatagttttaccattttgaccacgctgcgttcatcgaaattttcaggacaaatagcagttttcatggtcttggtctggttgtgaggggg
gi|7 : ttcccactacatcctcaaaaaattggatggattcagtaaaaacttgtacaacatggtaggaatgcagtagaaaccgataaggacatggaatagacgtggaggatgtggtcaaactttggacatgttaaaaaaaacatagtgaggacgtggtcagatcaggacgcagtaagaactAAG-----------CAC-ATGTTGAGATCTGAT----CTGCATG---ATCATGCATGTGTTAAGAAATTAATGGAGAAGT-G-TTAGACACACTGAGAACCTAGCA-G-G----------GAT--GTAGTATGAACTTG-AAAA-TTGCACATTT-T---TC-CATTTTGTCCTTGTCCCCGCTGTATTCATCAAAATTTCCAGGACTTAGT-GTGGTCTTTATGTTCTTGGCTCGAGTATTGGGG
gi|8 : TGGTAAGACATTAGTGTGTACGT-G-TTAAACGCAGTGAGAACCTGGCA-G-G----------GAC--GTAGTATGAACTTG-AAAG-TTGCACATTT-T--TTC-CATTTTGACCACGTCCGCACTGCGTTTATCGAAATTTTCAGTACGTAGTGGAGG--TTCATGGTCTTCATCTGAGTGTGAGGAGGGtcataacataaaatataagttgtatcagagacataat
gi|9 : ACTCTGTCACGTTACCACTACGCCGTCAAAAAATTTAGCGGATATAATAAGAAATT----GTACAACGTAGTAGGAATGCAGTAGAAACCGATAAGGATGTGGAATGGTCTCCAT--GG-CAGGG------------AGTATGTGG-------TTAAACTTTGGAAA---A----AAAAAA---CCTAGTGA------GAACATGcatcatataattgaattacgtgtcaactgataatgtttctagagtagaata
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TAGGGGTCAAAAACACGTGCCAATTACCTGTGATATCATGAACAAAAT
Unaligned ( gi|18 ): TATATTTGTAGTGGTCAAAGCCACACACCAATTACCTGTGGATGAA
Alignments
lowQualScore : 222222222222 1111111 111111 111 111111 1111111 55555555555555555555555555 111 666666666666666666666666666 7777777777777777777777 33333333333 22222222222 44444444444444 666666666666666
lowQualScore : 0 9999 1 888 0 222222222222 4444444 555555 333 444444 0 4444444 33333333333333333333333333 1 000 1 3 2 0 222222222222222222222222222 6 99 3333333333333333333333 66666666666 11111111111 4 4 1 55555555555555 3 4 4 1 1 111111111111111 66 4 4 4 66 2 4 4 4 0 9 0 0
lowQualScore : . .... . ... . ............ ....... ...... ... ...... . ....... .......................... . ... . . . . ........................... . .. ...................... ........... ........... . . . .............. . . . . . ............... .. . . . .. . . . . . . . .
lowQualScore : 2 4444 7 000 7 888888888888 4444444 888888 888 444444 1 7777777 00000000000000000000000000 0 222 0 7 5 8 888888888888888888888888888 3 22 5555555555555555555555 22222222222 11111111111 4 4 7 99999999999999 7 0 0 9 9 333333333333333 11 4 4 4 11 2 4 7 4 1 2 1 9
consensus : NCCCCTCACACTCAGCCACGTTCCCACTACGTCCTCAAAAAATTGGGTGGACGCAGTAAGAACTT----GTACAACGTAGTAGGAACGCAGTAGAAACCGATAAGGACGTGGAATGGTCTCCAT--GGACGTGG------------AGGACGTGG-------TCAAACTTTGGACATGTT----AAAAAA---CGTAGTGA------GGACGTGGTCAAATCAGGACGCAGTAAGAAC----TT-AATAAGGACGTAGT---A---A--------------C---GGCATTGACGTAGTATCAACGTAACTAAAACCTAGT--NGGGACTTCATTGACGTAGTACAAGCGTGGCGCTGACGGGAAAGATTGCATGGCGTTCTCACTGCATTGT-----NA-GTG-----GCGGTAAGCGCGTGGTAAGCGCGTGTTGAGATCTGAT--TGGT-----------C----------GTAGTAAGGA-----------CGTAGTAAG-----------AAC-GCATTG-GACGTGGT----GCGCGCG-T-ATCATGCGCGTGGTAAGAAATTAGTGGGGACGT-G-TTAGACGCAGTGAGAACCTGGCA-G-GAC----TAAGGAC--GTAGTATGAACTTG-AAAA-TTGCACATTT-T--TTC-CATTTTGACCACGTCCCCGCTGCGTTCATCGAAATTTTCAGGACGCAGT-GCGGTCTTCATGGTCTTCGTCTGAGTGTGAGGGGGG
Reference ( family-951 ) : NCCCCTCACACTCAGCCACGTTCCCACTACGTCCTCAAAAAATTGGGTGGACGCAGTAAGAACTT----GTACAACGTAGTAGGAACGCAGTAGAAACCGATAAGGACGTGGAATGGTCTCCAT--GGACGTGG------------AGGACGTGG-------TCAAACTTTGGACATGTT----AAAAAA---CGTAGTGA------GGACGTGGTCAAATCAGGACGCAGTAAGAAC----TT-AATAAGGACGTAGT---A---A--------------C---GGCATTGACGTAGTATCAACGTAACTAAAACCTAGT--NGGGACTTCATTGACGTAGTACAAGCGTGGCGCTGACGGGAAAGATTGCATGGCGTTCTCACTGCATTGT-----NA-GTG-----GCGGTAAGCGCGTGGTAAGCGCGTGTTGAGATCTGAT--TGGT-----------C----------GTAGTAAGGA-----------CGTAGTAAG-----------AAC-GCATTG-GACGTGGT----GCGCGCG-T-ATCATGCGCGTGGTAAGAAATTAGTGGGGACGT-G-TTAGACGCAGTGAGAACCTGGCA-G-GAC----TAAGGAC--GTAGTATGAACTTG-AAAA-TTGCACATTT-T--TTC-CATTTTGACCACGTCCCCGCTGCGTTCATCGAAATTTTCAGGACGCAGT-GCGGTCTTCATGGTCTTCGTCTGAGTGTGAGGGGGG
gi|1 : CTCCTCACACTCAGCTACGTTCCAACTACGTCCTCAAAAAAT-GAGTGGACGCAGTAAGAACTT----GTACAACGTAGTAGGAACGCAGTAGAAACCGATAAGGACGTGGAAAGGTC-CGATAAAGACGTGGAGTGGTCCGATAAGGACGCGGAATTGTCTCAA----TGGACGTG-------GATAA---CGTGATCAAACTTTGAACAT-GTTAAA--AAAACGTAGTGAGGACGAGGTCGAATCAGGACGCAGT---A---AGAACTTACTGACATT---GACATTGACGTAGTATCAACGTAACTAAAACCTAGT--AAGGACTTTATTGACGTAGTACAAG-----------TGGGAAAGATTGCATGGCGATTTCGCTGCGTTGCTTCTGGG-GTGTTAGCGTGGAAAGCGCGCGGTAAGCGCATGTTGAGATCTGAT--TGGT-----------C----------GTAGTAAGAA-----------CGTAGTAAGGATGTAGTAAAAAC-GCATTG-GACGT-GT----GTG-------ATCATGCAGGTGGTAAGAAATTAGTGGGGACGT-GTTTAGACGCAGT-AAAACCTGGCA-G-GA----------AT--GTAATAAGGAC-------A-TT-----TTT-T--TTC-AGTTTTGACCATGTCCCCACTGCGTTCATTATAATTTTTAGGACGCAGT-GCGGTCTTCATGATTTTTAT----GTGTGAGGGTGG
gi|10 : ccCCCCTCACACTTAGCCACATTCCCACTATGTCCTCAAAAAATTGGGTGGATGCAGCAAGAACTT----GTACAATGTAACAGGAATGCAGTAGAAACCAATAAGGATGTGGAATTGTTTCCAT--TGACGGTG------------AGGACGTGG-------TCAAACTTTGGATATGCT----AAAAAgggcgggggcatgaatctaattaaaacaatataaactgttgttactgataaaatg
gi|11 : ----------GTAGTAAGTA-----------CGTAGCAAG-----------AAT-GCATTG-GATGTGAT----G------------------------AGAAATTAGTGGGGATGT-G-TTTGAAGCAGTGAGAACCTGGCAGG-GACATAGTAAGGAC--TTAGTATGAACTTG-AAAATTTGCATATTT-T--T----------ACCACG-CACCGCTGC
gi|12 : gaatCCCTTCACACTCAGCCAC------------TCCTCAAAAAATTGGGTG---------AGAACTT----GTACAACGTAGTAAGAACGCAGTACAAACCGATAAGGACGTGGAGTGGTCTCCAT--GGAAGTGG------------AGGACGTGG-------TCAAACTTTGGACATATT----GAAAAA---
gi|13 : acCGTGGTAAGCGCGTGTTGCGATCTGAT--TGGT-----------C----------GTAGTAAGAACGTAGTAAAGACGTAGTAAG-----------AAC-GCATTG-GATGTGGT----GCGCGCA-TCATCATGTGCGCGGTAAGAAATTAGTGGGGACGT-G-ac
gi|14 : CACGTCCCCGCTGCGTTCATGGAAATGTTCAGGACGCAGA-GCGATCTTCATGGTATT-------GTGTGAGGGGG
gi|15 : aaAANNNN--NNNNNNTGAACTTG-AAAA-TTGCAC-TTT-T--TTCACATTTTGACCACGTCCCTGCTGCTGTCATCGAAATTTTCAGGAAGCAGT-ACCGTCTTCATGGTCTTTGTCTGTGTGTacattaaatataaaaatcaacacagcattacgttatttgatataaaata
gi|16 : aTGA------AGACGTGGTCGAATCGGGACGCAGTAAGAAC----TG-AATAAGGACCTAAT---A---A--------------t
gi|2 : atCCCTCACACTCAGTCACGTTCCCACTACATTCCCAAAAAATTGTGCGGATGCAGTAAGAAATT----GTACAACATAGTAGGAATGCAGTAGAAACCGATAAAGACACGGAGTAGTCTCCAT--GGATGCGG------------AGGACGTGG-------TCAAACTTTGGACATGTT----AAAAAAA--CGTAGTGA------GGACATTGTCAAATCAGAATGTTGTAAGAGC----AT-AATAAGGACATAGTTATG---A--------------T---GGTATTGACATAGTATCAACGTAACTAAAACCTAGA--AGGGACTTCATTGACGTAGTACAAGCATGGCGCTGACAGGAAAGGTTGCATGGCATTCTCATTGCATTGT-----CA-CTG-----GCAAT-------TGGTAAGCAC-TATTGTGATCTGATAATGGTTAAAGCAAGAAT----------GTAGAAAGGACGTAC------CGTAATAAA-----------AAC-GCAATA-AAAGTGAT----GTGCACA-TGATCATGCCTGTGGTAAGAAATTAAAGGTTACAT-G-TTAGG---GGTCAAAGCC--ACA-C-G-C----CAATTACCTGTGGTATGAACTTGAAAAA-TTGCATATTT-T--TAC-CATTTT------------GCTGCGTTCATCAAAGTTTTTAGGATGCAGA-GCTGTCTCCATGGTCTTTGTCTAAGTGTGTGGGGGG
gi|3 : CCCCTCACATTCAGCCACGTTCCCACTACGTCCTCTGCAAATTTGGTGGACGCAGTAAGAACTT----GTACAACGTAGTAGGAACGCAGAAGAAACCGATAAGAACGTGGAATGGTCTCCTT--GGACTTTG------------AGAATGTGG-------TCAAACTTTGGATATGTT----AAAAAA---TGGAGTGA------GGACGTGGTCGAATCAGGACACAGTAAG-AC----TT-AATAAGGACGTAGT---A---A--------------C---GGCATTGACGTAGTATCAACGTAACTAAAACCTAGG--AGGGATTTCATTAACGTAGTACAAGCGTCGCGCTGACGGG-AAGATTGCATGGCGTTCTCACTGCCTTCT-----CACATG-----GTTGTATGCGCGTTGTAAGCATGTGCTGAGATCTGAT--TGGT-----------C----------GTAGTAAGGA-----------CGTAGTAAG-----------AAC-ACATTG-GACATGGTTATCATGCGCGTT-ATAATGCACGTGGTAAGAAATTAGTGGGGACGT-G-TTAGACACAGTGAGAACCTGGCA-GTGACGTAGTAAGGAC--GTAGTATCAACTTG-AAAA-TTGCACATTTGT--TTC-CATGTTGACCACGCCCCCGATGCGTTCATCGATATTTTCAGGACGCAGT-GCGGTCTTCATGGTCTTCGTCTGAGTGTGAGAGGGGcataaatgacaaattttatctgc
gi|4 : gCCTCTCACACTTAGCCATATTCCCACTTAGTCCTCAAAAA-TTGGGTGGACGCAGTAAGAACTTACCTGTACAACATGGTAGGAATGCAGTAGAAACTGATAAAGACCTGGAATGGTTTCCAT--GGACGTGG----------------------------TCAGACTTTGGACATGTA----AAAAAAATATATAGTGA------GGTCATGGTCATATTAGAACGCAGTAAGAAC----TT-AATAAGGACGTAGT---A---A-----------------------TAATG--GCATTAACCTAACTAAAAC-TAGT--CGGGGCTT-ATTGACATACTACAAGCATTGCCCTGATGGGAAAGATTGCATGGCGTTGTCACTGGATTGT-----AA-GTG-----------------TGGTAAGCGCATGTTGAGATATGAT--TGGT-----------CATAGAAGATTGTAGTAAGAA-----------TGTAGTAAG-----------AAC-GCATTG-GATGTGGT----GAGCGCA-TGATCATGCGCATGGTCAGAAATTAGTAAGGATGT-G-TTAGACGCAGTGAGAACCTGG------------TAAGGAC--ATAGTATGAACTTG-AAAA-TTGCACATTT-TTTTTC-CATTTTGATTACATCCCCGCTGCATTCATCAAAATTTTCAGGACACAGT-GTGTTCTTCATG------GTCTAAGTGTGAGGGGGa
gi|5 : cCCTTCACACTCAGCCATGTTCCCACTTCGTCCTCAGAAAATTGGGTAGACGCAGTAAGAACTT----GTACAATGT-----------AGTAGAAACCGATAAGGACGTGGAATGGTCTCCAT-----------------------GGATGTGG-------TCAAATTTTTAATATGTTAAAAAAAAAA---TGCAGTGT------GGACGTGGTTAAATCAGGATGCAGTAAGAAT----GC-GATAAGGATGTTGT---A---A--------------CTATGGCATTGATGTATTATCAACATATCTAAAACCTAGTAGGGGGACTTCTTTGATGTAGTACAAGTGTGTTGCTGACGGGAAAGACAGCTTGACGTTCTCACTGGATTGT-----AA-G-A-----GTGGTAAGAATGTGGTAAGCGCATGTTGAAATCTGAT--TGGTCGTAGAAA---C----------GTAGTAATGA-----------CATAGAAAG-----------AAC-GCATTG-GACGTGGT----ACGCGTG-T--TCATGCGCGTGATAAGAAATTAGTGGGGACAT-G-TTAGATGCAGTAAAAataatagatttatg
gi|6 : TTCCCACTACATCCTCAAAAAATTGGATGGATTCAGTAAAAACTT----GTACAACATGGTAGGAATGCAGTAGAAACCGATAAGGACATGGA---------AT--AGACGTGG------------AGGATGTGG-------TCAAACTTTGGACATGTTAA--AAAAAA---CATAGTGA------GGACGTGGTCAGATCAGGACGCAGTAAGAAC----TT-AATAAGGACGTAGT---AATGA--------------C---AGCATTGATGTAGTATCAACTCAACTAAAACCTAGT--TGGGACTTCATTGATGTGGTACAAATGTGGCGCCGGC
gi|6 : TAATAAGGA-----------CGTAGTAAT-----------GACAGCATTG--ATGTAGT--------------ATCA-ACTCA-ACTAA-AACCTAGTTGGGACTTCA-TT-GATGTGGTACAAATGTGGC----GCC--------GGC--ATAGTATGAACTTG-AAAT-TTGTATAGTT-T--TAC-CATTTTGACCACG------CTGCGTTCATCGAAATTTTCAGGACAAATA-GCAGTTTTCATGGTCTTGGTCTGGTTGTGAGGGGGatagtatgaacttgaaatttgtatagttttaccattttgaccacgctgcgttcatcgaaattttcaggacaaatagcagttttcatggtcttggtctggttgtgaggggg
gi|7 : ttcccactacatcctcaaaaaattggatggattcagtaaaaacttgtacaacatggtaggaatgcagtagaaaccgataaggacatggaatagacgtggaggatgtggtcaaactttggacatgttaaaaaaaacatagtgaggacgtggtcagatcaggacgcagtaagaactAAG-----------CAC-ATGTTGAGATCTGAT----CTGCATG---ATCATGCATGTGTTAAGAAATTAATGGAGAAGT-G-TTAGACACACTGAGAACCTAGCA-G-G----------GAT--GTAGTATGAACTTG-AAAA-TTGCACATTT-T---TC-CATTTTGTCCTTGTCCCCGCTGTATTCATCAAAATTTCCAGGACTTAGT-GTGGTCTTTATGTTCTTGGCTCGAGTATTGGGG
gi|8 : TGGTAAGACATTAGTGTGTACGT-G-TTAAACGCAGTGAGAACCTGGCA-G-G----------GAC--GTAGTATGAACTTG-AAAG-TTGCACATTT-T--TTC-CATTTTGACCACGTCCGCACTGCGTTTATCGAAATTTTCAGTACGTAGTGGAGG--TTCATGGTCTTCATCTGAGTGTGAGGAGGGtcataacataaaatataagttgtatcagagacataat
gi|9 : ACTCTGTCACGTTACCACTACGCCGTCAAAAAATTTAGCGGATATAATAAGAAATT----GTACAACGTAGTAGGAATGCAGTAGAAACCGATAAGGATGTGGAATGGTCTCCAT--GG-CAGGG------------AGTATGTGG-------TTAAACTTTGGAAA---A----AAAAAA---CCTAGTGA------GAACATGcatcatataattgaattacgtgtcaactgataatgtttctagagtagaata
blockSeqs : ACCT T T . . TTAAAA ATA . TG TATGAT G AGG C C G CACATGGTTGTATGCGC G AA TAAAGCAAGAAT CGTAGTAAAGA . A A T TATCATGCGCGTT G C . A G AGGGACATAGTAAG CT A T G TT T A T G T
blockSeqs : . C G . . TTAA A . AT AACTAT G A C C C AAGAGTGGTAAGAAT G . CATAGAAGATT CGTAC . . . T GCGCGCATC C . . C C AGTGACGTAGTAAG . . . . . A . T . T
blockSeqs : . T G . . CT . . TT AATGAC C A C C T CACTGGCAAT A . CGTAGAAAC . . . . A GTGCACATG A . . C G ACGCCAAT . . . . . T . C . C
blockSeqs : . C G . . TT . . TT AAC A C C T G AAGTG A . C . . . . C GAGCGCATG G . . T G TAAG . . . . . T . T . G
blockSeqs : . T G . . TT . . GC AA T T . T G . . C . . . . T ACGCGTGT G . . T A GCC . . . . . A . T . G
blockSeqs : . T A . . TT . . TT . . . . C CTGCATG T . . C A AGG . . . . . T . T . C
blockSeqs : . T G . . TA . . . . . . T G A . . C G AGG . . . . . T . . . .
blockSeqs : . . . . . A . . . T . . . . . G . . . . . . . . . .
blockSeqs : . . .
blockSeqCons : G** ************ ******* TT**** ****** TT***** AACGAT******************** ACATGGCAC****************** *********** GCGCGCGTG***** AGG************
originalCons : NCCCCTCACACTCAGCCACGTTCCCACTACGTCCTCAAAAAATTGGGTGGACGCAGTAAGAACTT----GTACAACGTAGTAGGAACGCAGTAGAAACCGATAAGGACGTGGAATGGTCTCCAT--GGACGTGG------------AGGACGTGG-------TCAAACTTTGGACATGTT----AAAAAA---CGTAGTGA------GGACGTGGTCAAATCAGGACGCAGTAAGAAC----TT-AATAAGGACGTAGT---A---A--------------C---GGCATTGACGTAGTATCAACGTAACTAAAACCTAGT--NGGGACTTCATTGACGTAGTACAAGCGTGGCGCTGACGGGAAAGATTGCATGGCGTTCTCACTGCATTGT-----NA-GTG-----GCGGTAAGCGCGTGGTAAGCGCGTGTTGAGATCTGAT--TGGT-----------C----------GTAGTAAGGA-----------CGTAGTAAG-----------AAC-GCATTG-GACGTGGT----GCGCGCG-T-ATCATGCGCGTGGTAAGAAATTAGTGGGGACGT-G-TTAGACGCAGTGAGAACCTGGCA-G-GAC----TAAGGAC--GTAGTATGAACTTG-AAAA-TTGCACATTT-T--TTC-CATTTTGACCACGTCCCCGCTGCGTTCATCGAAATTTTCAGGACGCAGT-GCGGTCTTCATGGTCTTCGTCTGAGTGTGAGGGGGG
finalCons : NCCCCTCACACTCAGCCACGTTCCCACTACGTCCTCAAAAAATTGGGTGGACGCAGTAAGAACTT----GTACAACGTAGTAGGAACGCAGTAGAAACCGATAAGGACGTGGAATGGTCTCCATG--GACGTGG------------AGGACGTGG-------TCAAACTTTGGACATGTT----AAAAAA---CGTAGTGA------GGACGTGGTCAAATCAGGACGCAGTAAGAACTT-----AATAAGGACGTAGTAACGAT--------------------GGCATTGACGTAGTATCAACGTAACTAAAACCTAGT--NGGGACTTCATTGACGTAGTACAAGCGTGGCGCTGACGGGAAAGATTGCATGGCGTTCTCACTGCATTGTACATGGCAC------------------GTGGTAAGCGCGTGTTGAGATCTGAT--TGGT-----------C----------GTAGTAAGGA-----------CGTAGTAAG-----------AAC-GCATTG-GACGTGGTGCGCGCGTG-----ATCATGCGCGTGGTAAGAAATTAGTGGGGACGT-G-TTAGACGCAGTGAGAACCTGGCAGG------------GAC--GTAGTATGAACTTG-AAAA-TTGCACATTT-T--TTC-CATTTTGACCACGTCCCCGCTGCGTTCATCGAAATTTTCAGGACGCAGT-GCGGTCTTCATGGTCTTCGTCTGAGTGTGAGGGGGG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TAGGGGTCAAAAACACGTGCCAATTACCTGTGATATCATGAACAAAAT
Unaligned ( gi|18 ): TATATTTGTAGTGGTCAAAGCCACACACCAATTACCTGTGGATGAA
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 222222222222 1111111 111 111111 1111111 33333333333333 111 00000000000000000000000000000000000 7777777777777777777777 222222222222222222 22222222222 2222222222222 22222222222222222222222222222
lowQualScore : 0 9999 1 999 0 222222222222 4444444 999999 4 555 444444 0 4444444 33333333333333 1 000 1 3 2 0 44444444444444444444444444444444444 4 66 77 6666666666666666666666 444444444444444444 33333333333 5 1 4444444444444 3 4 4 1 1 888 88888888888888888888888888888 4 4 66 4 2 4 4 4 0 9 0 0
lowQualScore : . .... . ... . ............ ....... ...... . ... ...... . ....... .............. . ... . . . . ................................... . .. .. ...................... .................. ........... . . ............. . . . . . ... ............................. . . .. . . . . . . . . .
lowQualScore : 2 4444 7 000 7 888888888888 4444444 777777 4 666 444444 1 7777777 22222222222222 0 222 0 7 5 8 22222222222222222222222222222222222 2 99 99 3333333333333333333333 444444444444444444 88888888888 0 1 5555555555555 7 0 0 9 9 888 66666666666666666666666666666 4 4 11 4 2 4 7 4 1 2 1 9
consensus : NCCCCTCACACTCAGCCACGTTCCCACTACGTCCTCAAAAAATTGGGTGGACGCAGTAAGAACTT----GTACAACGTAGTAGGAACGCAGTAGAAACCGATAAGGACGTGGAATGGTCTCCAT--GGACGTGG------------AGGACGTGG-------TCAAACTTTGGACATGTT----AAAA-AA---CGTAGTGA------GGACGTGGTCAAATCAGGACGCAGTAAGAAC----TT-AATAAGGACGTAGTAA--------CGA---TGGCATTGACGTAGTATCAACGTAACTAAAACCTAGT--NGGGACTTCATTGACGTAGTACAAGCGTGGCGCTGACGGGAAAGATTGCATGGCGTTCTCACTGCATTG------------T-A--CG-TGG------GC----GCGTGGTAAGCGCGTGTTGAGATCTGAT--TG--GT---A-------C----------GTAGTAAG-----------GA-----CGTAGTAAG-----------AAC-GCATTGGACGTGGT----GCGCGCGTGATCATGCGCGTGGTAAGAAATTAGTGGGGACGT-G-TTAGACGCAGTGAGAACC---TGGCAG-----------GGAC--G-----------TAGTATGAACTTG-AAAA-TTGCACA--TTT-TTTC-CATTTTGACCACGTCCCCGCTGCGTTCATCGAAATTTTCAGGACGCAGT-GCGGTCTTCATGGTCTTCGTCTGAGTGTGAGGGGGG
Reference ( family-951 ) : NCCCCTCACACTCAGCCACGTTCCCACTACGTCCTCAAAAAATTGGGTGGACGCAGTAAGAACTT----GTACAACGTAGTAGGAACGCAGTAGAAACCGATAAGGACGTGGAATGGTCTCCAT--GGACGTGG------------AGGACGTGG-------TCAAACTTTGGACATGTT----AAAA-AA---CGTAGTGA------GGACGTGGTCAAATCAGGACGCAGTAAGAAC----TT-AATAAGGACGTAGTAA--------CGA---TGGCATTGACGTAGTATCAACGTAACTAAAACCTAGT--NGGGACTTCATTGACGTAGTACAAGCGTGGCGCTGACGGGAAAGATTGCATGGCGTTCTCACTGCATTG------------T-A--CA-TG-------GC----ACGTGGTAAGCGCGTGTTGAGATCTGAT--TG--GT-----------C----------GTAGTAAG-----------GA-----CGTAGTAAG-----------AAC-GCATTGGACGTGGT----GCGCGCGTGATCATGCGCGTGGTAAGAAATTAGTGGGGACGT-G-TTAGACGCAGTGAGAACC---TGGCAG-----------GGAC--G-----------TAGTATGAACTTG-AAAA-TTGCACA--TTT-TTTC-CATTTTGACCACGTCCCCGCTGCGTTCATCGAAATTTTCAGGACGCAGT-GCGGTCTTCATGGTCTTCGTCTGAGTGTGAGGGGGG
gi|1 : CTCCTCACACTCAGCTACGTTCCAACTACGTCCTCAAAAAAT-GAGTGGACGCAGTAAGAACTT----GTACAACGTAGTAGGAACGCAGTAGAAACCGATAAGGACGTGGAAAGGTC-CGATAAAGACGTGGAGTGGTCCGATAAGGACGCGGAATTGTCTCAA----TGGACGTG-------GAT-AA---CGTGATCAAACTTTGAACAT-GTTAAA--AAAACGTAGTGAGGACGAGGTCGAATCAGGACGCAGTAAGAACTTACTGACATTGACATTGACGTAGTATCAACGTAACTAAAACCTAGT--AAGGACTTTATTGACGTAGTACAAG-----------TGGGAAAGATTGCATGGCGATTTCGCTGCGTTGCTTCTGGGGTGTT-AG-CG-TGGAAA---GC----GCGCGGTAAGCGCATGTTGAGATCTGAT--TG--GT-----------C----------GTAGTAAG-----------AA-----CGTAGTAAGGATGTAGTAAAAAC-GCATTGGACGT-----------GTGTGATCATGCAGGTGGTAAGAAATTAGTGGGGACGT-GTTTAGACGCAGT-AAAACC---TGGCAG-----------GAAT--G-----------TAATAAGGAC-------A-TT-------TTT-TTTC-AGTTTTGACCATGTCCCCACTGCGTTCATTATAATTTTTAGGACGCAGT-GCGGTCTTCATGATTTTTAT----GTGTGAGGGTGG
gi|10 : ccCCCCTCACACTTAGCCACATTCCCACTATGTCCTCAAAAAATTGGGTGGATGCAGCAAGAACTT----GTACAATGTAACAGGAATGCAGTAGAAACCAATAAGGATGTGGAATTGTTTCCAT--TGACGGTG------------AGGACGTGG-------TCAAACTTTGGATATGCT----AAAA-Agggcgggggcatgaatctaattaaaacaatataaactgttgttactgataaaatg
gi|11 : ----------GTAGTAAG-----------TA-----CGTAGCAAG-----------AAT-GCATTGGATGTGAT----G-----------------------AGAAATTAGTGGGGATGT-G-TTTGAAGCAGTGAGAACC---TGGCAG-----------GGAC--ATAGTAAGGACTTAGTATGAACTTG-AAAATTTGCATA--TTT-TT----------ACCACG-CACCGCTGC
gi|12 : gaatCCCTTCACACTCAGCCAC------------TCCTCAAAAAATTGGGTG---------AGAACTT----GTACAACGTAGTAAGAACGCAGTACAAACCGATAAGGACGTGGAGTGGTCTCCAT--GGAAGTGG------------AGGACGTGG-------TCAAACTTTGGACATATT----GAAA-AA---
gi|13 : acCGTGGTAAGCGCGTGTTGCGATCTGAT--TG--GT-----------C----------GTAGTAAGAACGTAGTAAAGA-----CGTAGTAAG-----------AAC-GCATTGGATGTGGT----GCGCGCATCATCATGTGCGCGGTAAGAAATTAGTGGGGACGT-G-ac
gi|14 : CACGTCCCCGCTGCGTTCATGGAAATGTTCAGGACGCAGA-GCGATCTTCATGGTATT-------GTGTGAGGGGG
gi|15 : aaTGAACTTG-AAAA-TTGCAC---TTT-TTTCACATTTTGACCACGTCCCTGCTGCTGTCATCGAAATTTTCAGGAAGCAGT-ACCGTCTTCATGGTCTTTGTCTGTGTGTacattaaatataaaaatcaacacagcattacgttatttgatataaaata
gi|16 : aaannnnnnnnnnTGA------AGACGTGGTCGAATCGGGACGCAGTAAGAAC----TG-AATAAGGACCTAATAA--------t
gi|2 : atCCCTCACACTCAGTCACGTTCCCACTACATTCCCAAAAAATTGTGCGGATGCAGTAAGAAATT----GTACAACATAGTAGGAATGCAGTAGAAACCGATAAAGACACGGAGTAGTCTCCAT--GGATGCGG------------AGGACGTGG-------TCAAACTTTGGACATGTT----AAAAAAA---CGTAGTGA------GGACATTGTCAAATCAGAATGTTGTAAGAGC----AT-AATAAGGACATAGTTA--------TGA---TGGTATTGACATAGTATCAACGTAACTAAAACCTAGA--AGGGACTTCATTGACGTAGTACAAGCATGGCGCTGACAGGAAAGGTTGCATGGCATTCTCATTGCATTG------------T----CACTG-------GC----AATTGGTAAGCAC-TATTGTGATCTGATAATG--GTTAAAGCAAGAAT----------GTAGAAAG-----------GACGTACCGTAATAAA-----------AAC-GCAATAAAAGTGAT----GTGCACATGATCATGCCTGTGGTAAGAAATTAAAGGTTACAT-G-TTAGG---GGTCAAAGCCACACGCCAA-----------TTACCTG-----------TGGTATGAACTTGAAAAA-TTGCATA--TTT-TTAC-CATTTT------------GCTGCGTTCATCAAAGTTTTTAGGATGCAGA-GCTGTCTCCATGGTCTTTGTCTAAGTGTGTGGGGGG
gi|3 : CCCCTCACATTCAGCCACGTTCCCACTACGTCCTCTGCAAATTTGGTGGACGCAGTAAGAACTT----GTACAACGTAGTAGGAACGCAGAAGAAACCGATAAGAACGTGGAATGGTCTCCTT--GGACTTTG------------AGAATGTGG-------TCAAACTTTGGATATGTT----AAAA-AA---TGGAGTGA------GGACGTGGTCGAATCAGGACACAGTAAG-AC----TT-AATAAGGACGTAGTAA--------C------GGCATTGACGTAGTATCAACGTAACTAAAACCTAGG--AGGGATTTCATTAACGTAGTACAAGCGTCGCGCTGACGGG-AAGATTGCATGGCGTTCTCACTGCCTTC------------TCA--CA-TGGTTGTATGC----GCGTTGTAAGCATGTGCTGAGATCTGAT--TG--GT-----------C----------GTAGTAAG-----------GA-----CGTAGTAAG-----------AAC-ACATTGGACATGGTTATCATGCGCGTTATAATGCACGTGGTAAGAAATTAGTGGGGACGT-G-TTAGACACAGTGAGAACC---TGGCAGTGACGTAGTAAGGAC--G-----------TAGTATCAACTTG-AAAA-TTGCACA--TTTGTTTC-CATGTTGACCACGCCCCCGATGCGTTCATCGATATTTTCAGGACGCAGT-GCGGTCTTCATGGTCTTCGTCTGAGTGTGAGAGGGGcataaatgacaaattttatctgc
gi|4 : gCCTCTCACACTTAGCCATATTCCCACTTAGTCCTCAAAAA-TTGGGTGGACGCAGTAAGAACTTACCTGTACAACATGGTAGGAATGCAGTAGAAACTGATAAAGACCTGGAATGGTTTCCAT--GGACGTGG----------------------------TCAGACTTTGGACATGTA----AAAA-AAATATATAGTGA------GGTCATGGTCATATTAGAACGCAGTAAGAAC----TT-AATAAGGACGTAGTAA--------TAA---TGGCATT-----------AACCTAACTAAAAC-TAGT--CGGGGCTT-ATTGACATACTACAAGCATTGCCCTGATGGGAAAGATTGCATGGCGTTGTCACTGGATTG------------T-A--AG-TG----------------TGGTAAGCGCATGTTGAGATATGAT--TG--GT-----------CATAGAAGATTGTAGTAAG-----------AA-----TGTAGTAAG-----------AAC-GCATTGGATGTGGT----GAGCGCATGATCATGCGCATGGTCAGAAATTAGTAAGGATGT-G-TTAGACGCAGTGAGAACC---TGGTAA-----------GGAC--A-----------TAGTATGAACTTG-AAAA-TTGCACATTTTT-TTTC-CATTTTGATTACATCCCCGCTGCATTCATCAAAATTTTCAGGACACAGT-GTGTTCTTCATG------GTCTAAGTGTGAGGGGGa
gi|5 : cCCTTCACACTCAGCCATGTTCCCACTTCGTCCTCAGAAAATTGGGTAGACGCAGTAAGAACTT----GTACAATGT-----------AGTAGAAACCGATAAGGACGTGGAATGGTCTCCAT-----------------------GGATGTGG-------TCAAATTTTTAATATGTTAAAAAAAA-AA---TGCAGTGT------GGACGTGGTTAAATCAGGATGCAGTAAGAAT----GC-GATAAGGATGTTGTAA--------CTA---TGGCATTGATGTATTATCAACATATCTAAAACCTAGTAGGGGGACTTCTTTGATGTAGTACAAGTGTGTTGCTGACGGGAAAGACAGCTTGACGTTCTCACTGGATTG------------T-AAGAG-TG-------GTAAGAATGTGGTAAGCGCATGTTGAAATCTGAT--TG--GTCGTAGAAA---C----------GTAGTAAT-----------GA-----CATAGAAAG-----------AAC-GCATTGGACGTGGT----ACGCGTGT--TCATGCGCGTGATAAGAAATTAGTGGGGACAT-G-TTAGATGCAGTAAAAataatagatttatg
gi|6 : TTCCCACTACATCCTCAAAAAATTGGATGGATTCAGTAAAAACTT----GTACAACATGGTAGGAATGCAGTAGAAACCGATAAGGACATGGAATAG-----------ACGTGG------------AGGATGTGG-------TCAAACTTTGGACATGTT----AAAA-AAAA-CATAGTGA------GGACGTGGTCAGATCAGGACGCAGTAAGAAC----TT-AATAAGGACGTAGTAA--------TGA---CAGCATTGATGTAGTATCAACTCAACTAAAACCTAGT--TGGGACTTCATTGATGTGGTACAAATGTGGCGCCGGC
gi|6 : ----ACATAGTGAGGACGTGGTCAGATCAGGA--CGCAGTAAGAA------C----------TTAATAAG-----------GA-----CGTAGTAAT-----------GACAGCATTG-ATGTAGT-------------ATCA-ACTCA-ACTAA-AACCTAGTTGGGACTTCA-TT-GATGTGGTACAAATG---TGGCGC-----------CGGC--A-----------TAGTATGAACTTG-AAAT-TTGTATA--GTT-TTAC-CATTTTGACCACG------CTGCGTTCATCGAAATTTTCAGGACAAATA-GCAGTTTTCATGGTCTTGGTCTGGTTGTGAGGGGGatagtatgaacttgaaatttgtatagttttaccattttgaccacgctgcgttcatcgaaattttcaggacaaatagcagttttcatggtcttggtctggttgtgaggggg
gi|7 : ttcccactacatcctcaaaaaattggatggattcagtaaaaacttgtacaacatggtaggaatgcagtagaaaccgataaggacatggaatagacgtggaggatgtggtcaaactttggacatgttaaaaaaaAAGCACATGTTGAGATCTGAT--
gi|7 : GCATGATCATGCATGTGTTAAGAAATTAATGGAGAAGT-G-TTAGACACACTGAGAACC---TAGCAG-----------GGAT--G-----------TAGTATGAACTTG-AAAA-TTGCACA---TT-TTTC-CATTTTGTCCTTGTCCCCGCTGTATTCATCAAAATTTCCAGGACTTAGT-GTGGTCTTTATGTTCTTGGCTCGAGTATTGGGGctgcatgatcatgcatgtgttaagaaattaatggagaagtgttagacacactgagaacctagcagggatgtagtatgaacttgaaaattgcacatttttccattttgtccttgtccccgctgtattcatcaaaatttccaggacttagtgtggtctttatgttcttggctcgagtattggggtcataacataaaatataagttgtatcagagacataat
gi|8 : aagcacatgttgagatctgatctTGGTAAGACATTAGTGTGTACGT-G-TTAAACGCAGTGAGAACC---TGGCAG-----------GGAC--G-----------TAGTATGAACTTG-AAAG-TTGCACA--TTT-TTTC-CATTTTGACCACGTCCGCACTGCGTTTATCGAAATTTTCAGTACGTAGTGGAGG--TTCATGGTCTTCATCTGAGTGTGAGGAGGGtcataacataaaatataagttgtatcagagacataat
gi|9 : ACTCTGTCACGTTACCACTACGCCGTCAAAAAATTTAGCGGATATAATAAGAAATT----GTACAACGTAGTAGGAATGCAGTAGAAACCGATAAGGATGTGGAATGGTCTCCAT--GG-CAGGG------------AGTATGTGG-------TTAAACTTTGGAAA---A----AAAA-AA---CCTAGTGA------GAACATGcatcatataattgaattacgtgtcaactgataatgtttctagagtagaata
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TAGGGGTCAAAAACACGTGCCAATTACCTGTGATATCATGAACAAAAT
Unaligned ( gi|18 ): TATATTTGTAGTGGTCAAAGCCACACACCAATTACCTGTGGATGAA