lowQualScore : 11 1111111111 4444444444 1 1111111 1 11111111111111 11111 1 11 1
lowQualScore : 66 0000000000 22 3 1 1111111111 9 6 22 44444 5 3333333 8 1 1 44444 66 22 1 1 1 44 33 0 22222222222222 1 4444 333 333 333 1 7777 1 55555 1 2 222 1 5 1 55 1 3333 2 3 2 3 1
lowQualScore : .. .......... .. . . .......... . . .. ..... . ....... . . . ..... .. .. . . . .. .. . .............. . .... ... ... ... . .... . ..... . . ... . . . .. . .... . . . . .
lowQualScore : 55 8888888888 22 6 6 4444444444 0 8 33 22222 8 7777777 6 6 6 00000 66 33 7 7 0 22 00 4 11111111111111 8 6666 222 222 222 8 7777 7 55555 7 8 888 6 1 6 88 6 4444 9 7 8 8 7
consensus : GGTTTG-TAATAT---------CT--ATATNA-CGTGAACTTGTCTGCAATCCTAT--A--T--CTTGAGTATATCAGAGTCGTATCAAATAATTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGCCTA-----TGTCTCAACAGTTTACGAAATCATTTGATGGAAACTGCTGT--CAGGCAAATTTCTT-TCA-TATT-----TGC--TTACTACCA--TG-G-GCAACTACTTTAT-CAGCATTTACT-TCTGTGGAGCTATT---TNACC-CTGACGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAG-TTT----AGTCGC-GTTGTTCAATACATGTTTATAATCGTGNTTGGATAGGTCTTTGCATTAA---TCATCATTGGTACTCATACTTGACAAA-ATAT-CTTC-AACTC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATT-CTGACTTCAGAATAATCCC
Reference ( gi|11 ) : GGTTTG-AAATAC---------CT--ATATAA-CGTGAACTTGTCTGCAATCCT-T--A--C--CTTGAGTATATCAGAGTCCTATCAAATAATTTAGCAACTCCTGCCTTTATTTGTCTCTTT--GACACAGCCTA-----TGTCTCAATAGTTTACGAAATCATTTGATGGAAACTGCTAT--CAGGCGAATTTCTT-TCA-TATT-----TGC--TTACTACCA--TG-G-GCAACTGCTTTAT-CAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAG-TTA----AGTCGC-GTTGTTCAATACATGTTTATAATCGTGATTGGATAGGTCTTTGCATTAA---TCATCATTGGGACTCACACTTGACAAA-ATAT-ATTC-AACTC----TACTGCAAACATGCAAACTCAGTCTCCATATTTCCAATCAAT-CTGACTTCAGAATAATCCC
gi|10 : GGTTTG-TAATAC---------CT--ATATAA-CGTGAACTTGTCTGCAATCCT-T--A--T--CTTGAGTATATCAGAGTCCTATCAAATAATTTAGCATCTCCTGCTTTTATTTGTCTCTTT--GACACAGCCTA-----TGCCTCAACAGTTTAGGAAATCATTTGATGGAAACTGCTGT--CAGGCGAACTGCTT-TCA-TATT-----TGC--TTACTACCA--TG-G-GCAACTGCTTTAT-CAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTAAG-TTT----AGTCGC-ATTGTTCAATACATGTTTATAATCGTGATTGGATAAGTCTTAGCATTAA---TCATCATTGGGACTCATACTTAACAAA-ATAT-CTTC-AACTC----TACTGCAAACATGCAATCTCAGTCTCCATAATTCCAATTATT-CTGACTTCAGAATAATCCC
gi|8 : GGTTTG-TAATAA---------CT--ATATAA-CGTGAACTTGTCTGCAATCCT-T--A--T--CTTGAGTATATCAGAGTCCTATCAAATAATTTAGCATCTCCTGCCTTTATTTATCTCTTT--GACACAGCCTA-----TGTCTCAACAGTTTCTGAAATCATTTGATGGAAACTGCTGT--CAGGTGAATTTCTT-TCA-TATT-----TGC--TTACTACCA--TG-G-GCAACTGCTTTAT-CAGCATTTACT-TCTGTGGAGCTATTTAATAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAG-TTT----AGTCGC-ATTGCTCAATACATGTTT-TAATTGTGATTTGATAGGTCTTTGCATAAA---TCATCATTGGGAATCATACTTGACAAA-ATAT-CTTT-AACTCTTAGTACTGCAAACATGCAAACTCAGTCTCCATATTTCCAATCATT-CTGACTTCAGAATAACCCCa
gi|13 : GGTTTG-TAATAT---------CT--ATATAA-CGTGAACTTGTCGGCAATCAT-T--A--T--CTTGAGTATATCAGAGTACTAT--AA-AATTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGCCTA-----TGTCTCTACAGTTTA-----TCATTTGATGGAAATTGGTGT--CAGGCGAATTTCTT-TCA-TATT-----TGG--TTACTTCCA--TG-G-GCAATTGCTTTAT-CAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAG-TA---ACAT---AA---T---TGAA-T----ATGGGTGTTTAG-TTA----AGTCGC-GTTGTTCAATACATGTTTATAATCTTGATTGGATAGGGTTTTGCATTAA---TCATCATTGGGACTCATACTTGACAAA-ATAT-CTTC-AACTC----TACTGCAAACATGCAAACTCAGTCTCCATATTTCCAATCATT-CTGACTTCAGAATAATCCCa
gi|15 : GGTTTG-TAATAC---------CT--ATATAA-CGTGAACTTGTCTGCAATCCT-T--A--T--CTTGAATATATCAGAGTCCTATCAAATAATGTAGCATCTTCTTCCTTTATGTGTCTCTTT--GACACAGCCTT-----TGTCTCAACAGTTTACGAAATCATTTGATGGAAATTGCTGT--CAGGCGAATTTCTT-TCA-TATT-----TGC--TTACTACCA--TG-G-GCAACTGTTTTAT-CAGCATTTACT-TCTGTTGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----AAGGGTG-------TA----AA--------GTTCAATACATATTTATAATCGTGATTTGATAGGTCTTTGCATTAA---TCATCATTGGGACTCATACTTGACAAA-ATAT-CTTC-ATCTT----TACTGCAAACATGCAAACTCAGTCTTCGTATTTCCAATCATT-CTGACATAAGAATTATCCCa
gi|14 : GGTTTG-TAATAT---------CT--ATATAA-CGTGAACCTGTCTTCAATCCTATG-A--CT-CTTGA--ATATCAGAGTTGTATCAAATAACTTAGCATCTCCTGCCTTTATTTGTCATTTT--GACTCAGCCCA-----TGTCTCAACAGTTTACGAAAACATTTTATGGGAAATGC---------CG----TCTT-TCA-TATT-----TGC--ATACTACCA--TG-G-GCAACTGCTTTAT-CATCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGGTAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTATAG-TTT----AGTCGC-GTTGTTCAATACATGTTTATAATCGTGATTGGATAGGTATTTGCACTAA---TCATCATTGGCGCTCATACTTGTCAAA-ATAT-TTTC-AATTC----TATTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATT-CTGACTTCCGAATAATCCC
gi|4 : GGTTTG-TCATAT---------CT--ACATCA-TGTGAACTTGTCTGCAATCCT-TTAA--CT-CTTTAGTATATCAGAGTCATATAAAATAATTTACCATCTCCTGCCTTTATTTGTCCCTTT--GACACAGCCTA-----TGCC-CAACAGTTTACGAAATCTTTTGATGGAAACTGCTGTGTCAGGCAAATTTCTT-TCA-TATT-----TGC--TTACTACAA--TG-G-GAAACTACTTTAT-CAGCATTTACT-TTTGTGGAGCTATT---TGACCACTGACGGCAT-TT---ACAT---AA---TTGTACAA-TGTAAATGGGTGTTTAG-TTT----AGTCGCAGTT-TTCAATACATGTATATAATCGTGTTTGGATAGGTGTTTGCATCAA---TAATCATTGGTACTCATACTTGACAAA-ATAT-CTTC-AATTC----TACTGCAGACATGCAAACTCAATCCCCATATGTCCAGTCATT-CTGACTTCAGAATAATC
gi|7 : ctagttcatgagctagaaGGTTTG-TAATAT---------CT--GTATCA-CGTGAACTTGTCTACAAT--T-G--A--CT-CTTGAGTATATCAGAGTTTAAGCAAATACTTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGCGTT-----TGTCTCAACAGTTTACGACATCTTTAGATGGAAACTGCTGT--CCGGCAAATTTCTT-TCG-TATT-----TGC--TTGCTACCA--TG-G-GCATCTACTTTAT-CAGCATTTATT-TCTGTGGAACTATT---TTACCACTGACAATAT-TA---ACAT---AA---T---TGAT-T----ATGGGTGTTTAG-TTT----AGTCGC-GTTGTTCAATACATGTATATAATTGTGCTTGAGTATGTCTTTGCATCAA---TCATCATTGGTACTCATACTTGACAAA-ATAT-CTTC-AACTC----TACT---ATCATGCAAACTGAATCCCCATTTTTCCATTCATT-CTGACTTCAGAATAAT
gi|16 : ctagttgatgagctaaaaGGTTTG-TAATAT---------CT--ATATCA-TGTGAACTTGTCTGAAATCCTATAAA--T--CTTGGGTATATCAAAGTCGTATCAACTA----AGC-------------ATCTGTCTCTTT--GACACAGCCTA-----TGTCTCAACAGTTTACGAAATATTTTGGTAGAAACTACAGT--CAGGCAAATTTCTT-TCA-TATT-----TGC--TTACTACCA--TG-A-GCAACTACTTTTT-CAGCATTTACT-TCTGTGGAGCTATT---------------GCAC-TA---A------AA---T---AGAA-T----ATGGGTGTTTAG-TTT----AGTAGC-GTTGTCCAAGACATGTTTATAATCGTGTTTGGATAGGTATTTGCATCAA---TCATCATTGGACCTCATATTTAACAAT-ATAT-TTTC-AACTC----TACTGCAAGCATGCAAACTCAATCCCAATATTTTCAGTGATT-CTGACTTCAGAATAATCa
gi|6 : agttgatgagcaagacGATTTG-TAATAT---------CT--ATATCATCGT-AACTTGTCTGCAATCTTAT--AACT--CTTTAGTATATCAGAGTTTTATAAAATAATTTACCATCTCCTAACTGTATTTGTCTCTTT--GACACAGCCTA-----TATC-CAACAGTTCACGAAATATTTTGATG----------T--CAGGCAAATTTCTT-TCA-TATT-----TGC--TAACTACCA--TG-G-GAAACTACTTTAT-CAGCATTTACG-TTTGTTAAGCTATT---TAACCACTGACAATAT-TA---ACAT---AAAAGT---ACAA-TGTATATGGGTGTTTAG-TTT----AGTTGC-ATTTTTCAATACATGTATAAAATCGTTCTTAGAAAGGTCTTTGTATCAG---TCATCATAGGTACTCATACTTGACAAA-ATAT-CTTC-AACTC----TACTGCAAACATGCAAACTTCATCCCCATATGTCCAGTCATT-CTGACTTCAGAACAATC
gi|19 : ctagttcatgagctagaaGGTTTG-TAATAT---------CT--ATATAA-CATGAACTTGTCTGCAATCCT-T--A--T--CTTGAGTGTATCGGAGTCCTATCAAATAATTTAGTATCTCCTGCCTTTATGTGTCTCTTT--GACACAGCATA-----TGGTTAAACAGTTTACGAAATCATTGGATGGAAACTGCTGT----GGC-AACTGCTT-----TATC-----AGCATTTACTTCTG--TG-G---AGCTA-TTGA----------ACC-TC--TGAAGATA-T---TAAC--------------------AT---AA---T---AGAA-T----ATGGGTGTTTAG-TTA----AGTCGC-GTTGTTCAATACATGTTTATAATCGTGATTGGATAGGTCTTTGCATTAA---TCATCATCGGTACTCATACTTGACAAA-ATAT-CTTC-ACCTC----TGTTGCCAACATGCAAACTCAATCCCTATATTTCCAGTCATT-CTGATTTCAGAATAAT
gi|20 : GGTTTG-TAATAT---------CT--ATATAA-CATGAACTTGTCTGCAATCCT-T--A--T--CTTGAGTATATCAGAGTCGTATTAAA-AATTTAGCATCTCCTGCCTTAACGTGTCTCTTT--GACACAGCATA-----TGGTTAAACAGTATACGAAATCATTTGATGGAAACTGCTGC----GGC-AACTGCTT-----TATC-----AGCATTTACTTCTG--TG-G---AGCTATTT-----AACATC---------TGAAGATAT---------------------TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAG-TTT----AGTCGC-GTTGTTCAATATATGTTTATAATTGTGATTGGATAGGTCTTTGCATTAA---TCATCATTGGTACGCATACTTGACAAA-ATAT-CTTC-AACTC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATT-CTGACTTCAGAATAAT
gi|22 : GGTTTG-TAATAT---------CT--ATATAA-CGTGAACTTTTCTGCAATCCT-T--A--T--CTTGAGTATTTCAGAGTCGTATCAAATAATTTAGCATCTCCTGCCTTTATGTGTCTCTTT--GACACAGCCTA-----TGGTTAAACAGTTTACGAAATCATTTGATGGAAACTGCTGT----GGTAACTGTTTTATCAGTATT-----TAC--TT----CTG--TG-G---AGCTA-TTTA----------ACC-TCTG----------------------AAGATAT-TA---ACAT---AA---T---AGAA-T----TTGATTGTTTAG-TTT----AGTCGC-TTTGTTCAATACATGTTTAT-ATCGTGATTGAATAGGTCTTTGCATTGA---TCATCATTGGTACTCATACTTGACAAA-ATAT-CTTC-AACTC----TACTGCAAACATGCAAACTCAATGCCCATATTTCCAAT
gi|12 : GGTTTG-TAATAT---------CT--CTCTCA-CGTGAACTTGTCTGCAATCCTAT--AACT--CTTGAGTGTACCAGAATCGTATCAAA-------------CCTGCCT--AGTTGTCTTTTT--GAGACAGCCTA-----TTTCTCAACAGTTTACGAAATCTTTCGATGGAAACTG---T--CGGGCATATTTCTT-TCA-TATT-----TGC--TTACTACCA--TG-G-GCTACTACTTTAT-CAGCATTTACTGTCTGTGGATCTATT---TTACCACTGACAATATATACATACATTTGAA---T---AGAA-T----ATGAGCATTTAG-TTT----AGTCGC-GTTGTTCAATACATGTTTACAATCGTGCTTGGATATGGCTTTGCATCAG---TACTCATTAG----------TAACAAA-ATA----TCAAACTC----TACTGCAAACAAACAAACTCAATCCCCATATTTTCAGTCATT-CTGGCTTCAGAATAATCCCtc
gi|18 : ctagttgatgagctacaaGGTTTG-TAATAT---------CT--ATATAA-CATACACTTGTCTGCAATATC-T--A--T--CTTGAGTACATTAGAGTCGTATCAAATAATTTAGCATCTCCGGCCTTTATGTGTCTCTTC--GACACAGCATA-----TGGTTAAACAGTTTACGAAATCATTTGATGGAAACTGCTGT----GGC-AACTGCTT-----TATC-----AGCATTTACTTCTG--TG-GAACAA----TTTA----------ACC-TCTG----------------------AAGATAT-TA---ACAT---AA---T---AGAA-T----ATTGGTGTTTAG-TTT----AGTCGC-CTTGTTCAATACATGTTTATAATCGGGATTTGATACAACTTTGCATTTA---TCATCGTTGGTACTCATACTTGACAAT-ATGT-CTTC-AACTC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATT-CTGACTTCTGAATAATCC
gi|17 : GATTTG-TAATAT---------CT--ATCTCA-CTTGAACTTGTCTTCAGTCATAT--AACT--CTTGAGTATACCAAAATGGTATCAAATAATTCAACATCTCCTG----------------------ACAGCCTA-----TGTCTCAACAGTTTACGAAATCATTTAATGGAAACTG---T--CAGGCAAATTT--T-TCC-TACT-----TGC--TTACTACCA--TA-G-GCTACTACTTTAT-CAGCATTTACT----GTGGAGCTATT---TTACCACTGACGATAT-TT---ACAT---TA---T---AGAA-T----ATGGGTGCTTAG-TTT----AGTCGC-GTTGT---------GTT-AT--TCGTGCTTGAATAGGTCTTTGCATCAA---TAATTATTGGTACTCACACATAACAAA-ATAT-CTTC-AATTC----TACTGCAAACATGCAAACTCAATCCCCAAATTTCCAGTCATT-CTGGCTTCAGAATA
gi|21 : tagttgatgagctagaaGGTTTG-TAATAT---------CT--ATATAA-CGTGAACTTGTCTGCAATCCT-T--A--T--ATTGAATATATCAGAGTCGTATCAAATAA-TTAGCATCTCCTGCCTTTATGTGTCTCTTT--GACACAGCATA-----TAGTAAAACAGTTTACGAAACCATTTGATGGAAACTTCTGT----GGC-AACTGCTT-T-A-TAAG-----CAT--TTACTTCTG--TG-G---AGCTA-TTGA----------ACC-TC--TGAAGATATT---------------------A---ACAT---AA---T---AGAA-T----AT-AGTGTTTAG-TTT----AGTCGC-GTTGTTCAATACATGTTTATTATTGTGATTAGATAGGTCTTTGCATTAA---TCATCATTACTACTCATACTTGACAAA-ATAT-CTTC-AGCTG----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATT-CTGACTTCAGAATA
gi|9 : GGTTTGTAAATACAGGAGCCATCT--ATATCA-CAGGCAC--GT--GCAATCCTAT--AACT--CTTGTGTATACCAGAAGCGTATAAAATAATTTAACATCTTCTGCCTTTATTCGTCTCTTT--GAGATAGCATAAAGTATGTCTCAACAGTTTACGAAATCATTTGCTAGAA----CTAC--CAGGCCAATTTCTT-TCA-CATT-----TGC--TTACTACCA--TG-G-GC--------TATTCAGCATTTACTGTCTATGAAGCTGTT---TTACCGCTGACTATAT-AT---ACAT---AA---T---ATAA-A----A-----GATTAG-T---------CGC-GTTGTTCAATACATGTTTATTATCGTGCTTGGATAGGTATTTGCATCAA---TCATCATTG-------TACTTGACAAA-AAAA-AT---A--TC----TACTACAAACATGCAAATTCAGCCCTTATATTTCTAGTAAAT-TTGGCTTCAGAATAATCCct
gi|3 : ctagttatgaactagacttaaGGTTTT-AA-TAT---------TT--ATATTA-CGTGAACTTGTCTGCAATCCTAT--AACT--CTTCAGTATATCAGAATTGTATCAAATAATTTTCCATCTCCTGCCTTTACTTGTCTCTTT--GCTATAGTCCA-----TGTCTCAATAGTTTTCGAAATCGTTTGATGGAAACTG---T--CAGGTAAGTTTCTT-TCA-TATT-----TGC--TTACTATCATTTA-G-G---CTAATTAAT-CAGCATTTAC--------GGTCTATT---TTACCACTGACGATAT-TT---ACAT---AG---T---ATAA-T----CTTGGTGTTTAG-TTT----GGTCGC-GTTGGTTAATACATGTTTCTAATTGTG
gi|25 : ctagttgatgaactagaaGGTTTG-TAATAT---------CT--ATCTAA-CGTGAACTTGTCTGTTATCCTAT--AACT--CTTGAGTATACCTGAATAGTATCAAATAATTTAGCATCTCCTGCCTTTAGTTGTCTCTTT--GAGACAGCCTA-----TGTCTCAACAGTATACGGAATCATTTGATGGAAACAG-TA----AGATAATTTTCTT-TCA-TATT-----TGC--TTACTTCTA--TG-G-GCTACTAATTTAT-CAGCATTTACTGTCTGTCGATTTATT---tgtttatctctcattgtctttagaatctaaacttattctacatttcatttttaccttatgcttggatatgtctttgtaaggctcatcactggtatccatacttgacaaatcctcttcaactctactgcaaacataaaaacccaatccccatatttgcagtcaatctg
gi|2 : tagttgatgagctagacGGTTTT-TAATAT---------CC--ATATCA-CGTGAACGTGTCTACATTACTAT--AACT--CTTGAGTGTATCAGAATCGTAT---ATAAT--AACATCTCCTGCCTTTATGCATCTCTTT--GACA----------------------GTTTTCGAAATCTTTTGAGGGAAACTG---T--CAGGCAAGTTTCTT-TTA-TATT-----TGC--ATATTACCA--TG-G-GCTACTACTTTAT-GAGGATTTACTGTCTGGGGAGATATT---TTACCGCTGACAACAT-TT---ACAT---AA---T---AGAATT----TTGGGTATTTTG-TTT----GGTCGC-ATTGATAAAGA------TATAATC-TAATTG
gi|26 : tattaataagctggaaGGTTTG-TAATAT---------CT--ATAAAA-CGTGAACTTATCTGCAAAACT-T--A-------------------AGTTGTATCAAATAA-TTAGGATCTCCTGCCTTTATTTGTCTCTTT--GACACAGCCTA-----TGTCTCAACAGTTTACGAAATCATTTGATGGAAACTGCTGT--CAGGTAAATTTCTT-TCA-TATT-----TGC--TTACAACCtgttcttatctctcaatgtcctaagaatctaaacttacatttctacatttcatattttctttatgtttggatagatctttgcaacaattatcagtggtactcatacttgacaaatattcaaatctactgtaagcatgcaaactcaatcgccatattttccgtcattctaacttgagaataatccc
gi|1 : GGTTTT-TAATAT---------TTTGGTATCC-CGTGATCTTGTCTGCAATCCTAT--A--CTTCTTGAGTATAACAGTATCGTATAAAAAAACT--ACATCTTCTGCCTTTATTTGTCTCTTT--GACATAGCCT------TGTATGAACTGTTTTCAAAATATTTTGATGGAAACTGC-----CAGGTAAATTTATT-TC--TGTTCACCGTGA--TTACTACCA--AA-G-GCTACTACTGTTT-AAGCATTTACTGTCTGCGAAACTATT---TTAC-------GATAC-TT---TCAT---AG---A---ATAA-T----CTTGTTGTTAAG-TTT----TGTCGC-ATTGATCGATACATGTTTCAAATC
gi|30 : ctaattgataaactagaaGGTTTG-TAATAT---------CT--ATATCA-TGTGAACTTGTCTTCAGTCCTATAAA--T--CTTGAGTATATCAGtgttcttatctttcattgtccttataagctgaacttattttacatatcatttcttccttatgcttcgataggtctttgcatgaatcatcattggtactaatacttgacaaatctgtttcaagtctactgcaagcgtacaaactcaattgccatattttcagtcattctggtttcaaaatgatcc
gi|23 : tagttgatgagctagaaTTTG-TTATAT---------CT--ATATCA-CGTGAACTT-----------T-T--------CTCGAGTATATTAGAGTCGTATCAAATAATTCAGCATCTCCTGCCTTTATTTGTCTATTTAAGACACATCCTA-----TGTCTCAACAGTTTACGTAATATTTTGATGTAAACTGCTGT--CAGGCAAATTTCTT-TCA-TATT-----TGC--TTACTACAA--TG-G-Gttgtat
gi|5 : tagttgatgagctagaagtATAT---------CT--ATTTCG-CATGAACTTGCCTTCACTTAT-TTAA--CT-CTTAAATATACAATATTTATATCAAGTAATTTGTCATCTTCTTTCTTTATTCGTTTCTTT--GACAAAAACTG-----TGACTCAACAGTTTATGACAT-AGTCGATGGAAACTG---T--CAAACAAGTTTCTA-TCA-CATT-----TGA--TTGCTATC---TGCG-GCTACTGCGTTTC-CATTATTTACTGTCTGGGGAG---------AACAT----GGGTGT-T-------T---AG---T--------------TGGGT-----------------CGT-GTTGATCAATACATATTTTTAATCGT-ATTCG-TA--TCTTT-CATTttacataatagaacatatgtgtctttatctcagtcatcattggtactcatgcttggcaaaatatcttcaactctactgtaaacatacaaactcaatccccatatatccagcaattctgacttcagaat
gi|24 : tagttcgtcagctagatataattggCTCAACAGTTTACGAAATCATTTAATGGAAACTGCTGT--CGGGCAAATTTCTT-TCA-TATT-----TGC--TAACTACCA--CG-G-GCAACTGCTTTAT-CATCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTTTAGTCTAGTCGC-GTTGTTCAATACATGTTT-CAATTGTGATTGGATAGGTCTTTGCATTAA---TCATCATTGGTACCCATACTTGACAAA-ATAT-CTTC-AACTC----TGCTGC--ACATGCAAACTCAATCTCCTTATTTCCAGTCATT-CTGACTTCAGAATAATCCgtcctgataatctgaacttactgtacattccatttcttctttatgcttgaattattctttgcattcaccattggtactcataccttacaaatattcttcaagtgtactgaaaactccccatattttcaatgattctgtattc
gi|31 : TGGGTGTGTAG-CTG----GGACGC-GTTGATCAAAACATATTTCTAATCGTG
gi|27 : TCGC-GTTGTTCAATACATGTTTACAATCGTGCTTGGATAGG------------------TCAT--------GCA--TGACAAA-ATAT-CTTC-ATTTC----TACTTCAAAAA-GCAAACTCAGTCCCAATAGTTTCTGTCATT-CTGACTTAAGAATATTCCttcttagaatttaagtttattctacatttatttct
gi|3 : TGCTTGGATATGTCTTTG---TAAGGCTCATCACTGGTATCCATACTTGACAAA-TCCT-CTTC-AACTC----TACTGCAAACATAAAAACCCAATCCCCATATTTGCAGTCAAT-CTGa
gi|2 : ctagttgatgaactagaaggttttaatatttatattacgtgaacttgtctgcaatcctataactcttcagtatatcagaattgtatcaaataattttccatctcctgcctttacttgtctctttgctatagtccatgtctcaatagttttcgaaatcgtttgatggaaactgtcaggtaagtttctttcatatttgcttactatcatttaggctaattaatcagcatttacggtctattttaccactgacgatatttacatagtataatcttggtgtttagtttggtcgcgttggttaatacatgtttctaattgtgtgtttatctctcattgtctttagaatctaaacttattctacatttcatttttaccttaTGTTTGGATAGATCTTTGCAACAA---TTATCAGTGGTACTCATACTTGACAAA----T-ATTC-AAATC----TACTGTAAGCATGCAAACTCAATCGCCATATTTTCCGTCATT-CTAACTTGAGAATAATCCC
gi|1 : tattaataagctggaaggtttttaatatccatatcacgtgaacgtgtctacattactataactcttgagtgtatcagaatcgtatataataacatctcctgcctttatgcatctctttgacagttttcgaaatcttttgagggaaactgtcaggcaagtttcttttatatttgcatattaccatgggctactactttatgaggatttactgtctggggagatattttaccgctgacaacatttacataatagaattttgggtattttgtttggtcgcattgataaagatataatctaattgtgttcttatctctcaatgtcctaagaatctaaacttacatttctacatttcatattttctttaTGCTTCGATAGGTCTTTGCATGAA---TCATCATTGGTACTAATACTTGACAAATCTGT--TTC-AAGTC----TACTGCAAGCGTACAAACTCAATTGCCATATTTTCAGTCATT-CTGGTTTCAAAATGATCC
gi|5 : ctaattgataaactagaaggtttttaatattttggtatcccgtgatcttgtctgcaatcctatacttcttgagtataacagtatcgtataaaaaaactacatcttctgcctttatttgtctctttgacatagccttgtatgaactgttttcaaaatattttgatggaaactgccaggtaaatttatttctgttcaccgtgattactaccaaaggctactactgtttaagcatttactgtctgcgaaactattttacgatactttcatagaataatcttgttgttaagttttgtcgcattgatcgatacatgtttcaaatctgttcttatctttcattgtccttataagctgaacttattttacatatcatttcttccttaTGCTTGAATTATTCTTTGCATT------CACCATTGGTACTCATACCTTACAAA--TATTCTTC-AAGTG----TACTGAAAAC------------TCCCCATATTTTCAATGATT-CTG
gi|28 : tagttcgtcagctagatataattggatatctatttcgcatgaacttgccttcacttatttaactcttaaatatacaatatttatatcaagtaatttgtcatcttctttctttattcgtttctttgacaaaaactgtgactcaacagtttatgacatagtcgatggaaactgtcaaacaagtttctatcacatttgattgctatctgcggctactgcgtttccattatttactgtctggggagaacatgggtgtttagttgggtcgtgttgatcaatacatatttttaatcgtattcgtatctttcattgtcctgataatctgaacttactgtacattccatttcttctttaGGTCTTTACATTAA---TCATCATTGGTACTCATACTTGACAAA-ATAT-CTTC-AACTC----TACTGCAAACATGCAAACTCATTCCTCATATTTCCAGTCATT-CTGACTTCAGAATAtattc
gi|23 : accGTCTTTATCTCAG---TCATCATTGGTACTCATGCTTGGCAAA-ATAT-CTTC-AACTC----TACTGTAAACATACAAACTCAATCCCCATATATCCAG-CAATTCTGACTTCAGAATtt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|29 ): GCATACTGTATCCCAATAGTTTCAGTGATTCTTCCTTCGGAATTATTCCAATTATACTATGCACATGTGTCATTAACATGGTTTCAACGAAGATATCACTCCACAA
Alignments
lowQualScore : 2222222 1 2
lowQualScore : 6666666666 22 1 1 8888888 22 44444 222 3 1 1 33333 1 22 1 33 0 0 2 3333 1 9 5 1 333 333 333 333 1 7777 44444 1 0 1 222 1 222 1 3333
lowQualScore : .......... .. . . ....... .. ..... ... . . . ..... . .. . .. . . . .... . . . . ... ... ... ... . .... ..... . . . ... . ... . ....
lowQualScore : 7777777777 11 0 5 1111111 22 00000 777 1 5 5 88888 6 22 6 44 3 0 2 7777 7 6 2 7 000 000 000 000 7 4444 22222 6 8 0 777 5 777 5 3333
consensus : GGTTTGTAA----------TATCT--ATATNA-CGTGAACTTGTCTGCAATCCTAT--AACTCTTGAGTATATCAGAGTCGTATCAAATAATTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGCCTA-----TGTCTCAACAGTTTACGAAATCATTTGATGGAAACTGCTGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTACTTTATCAGCATTTACT-TCTGTGGAGCTATTTAA----C-CNCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTCGC-GTTGTTCAATACATGTTTATAATCGTGNTTGGATAGGTCTTTGCATTAA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCAGAATAATCCC
Reference ( family-916 ) : GGTTTGTAA----------TATCT--ATATNA-CGTGAACTTGTCTGCAATCCTAT--A--TCTTGAGTATATCAGAGTCGTATCAAATAATTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGCCTA-----TGTCTCAACAGTTTACGAAATCATTTGATGGAAACTGCTGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTACTTTATCAGCATTTACT-TCTGTGGAGCTATTTNA----C-C-CTGACGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTCGC-GTTGTTCAATACATGTTTATAATCGTGNTTGGATAGGTCTTTGCATTAA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCAGAATAATCCC
gi|1 : GGTTTTTAA----------TATTTTGGTATCC-CGTGATCTTGTCTGCAATCCTAT--ACTTCTTGAGTATAACAGTATCGTATAAAAAAACT--ACATCTTCTGCCTTTATTTGTCTCTTT--GACATAGCCT------TGTATGAACTGTTTTCAAAATATTTTGATGGAAACTGC-----CAGGTAAATTTATT-TC--TGTTCACCGTGATTACTACCA--AA-GGCTACTACTGTTTAAGCATTTACTGTCTGCGAAACTATTTT------------ACGATAC-TT---TCAT---AG---A---ATAA-T----CTTGTTGTTAAGTT-----TTGTCGC-ATTGATCGATACATGTTTCAAATC-TGTT
gi|1 : ctaattgataaactagaaTGCTTCGATAGGTCTTTGCATGAA---TCATCATTGGTACTAATACTTGACAA---A-TCTGTTTCAAG-TC----TACTGCAAGCGTACAAACTCAATTGCCATATTTTCAGTCATTCTGGTTTCAAAATGATCCcttatctttcattgtccttataagctgaacttattttacatatcatttcttccttatgcttcgataggtctttgcatgaatcatcattggtactaatacttgacaaatctgtttcaagtctactgcaagcgtacaaactcaattgccatattttcagtcattctggtttcaaaatgatcc
gi|10 : ctaattgataaactagaaggtttttaatattttggtatcccgtgatcttgtctgcaatcctatacttcttgagtataacagtatcgtataaaaaaactacatcttctgcctttatttgtctctttgacatagccttgtatgaactgttttcaaaatattttgatggaaactgccaggtaaatttatttctgttcaccgtgattactaccaaaggctactactgtttaagcatttactgtctgcgaaactattttacgatactttcatagaataatcttgttgttaagttttgtcgcattgatcgatacatgtttcaaatctgttcttatctttcattgtccttataagctgaacttattttacatatcatttcttccttaGGTTTGTAA----------TACCT--ATATAA-CGTGAACTTGTCTGCAATCCT-T--A--TCTTGAGTATATCAGAGTCCTATCAAATAATTTAGCATCTCCTGCTTTTATTTGTCTCTTT--GACACAGCCTA-----TGCCTCAACAGTTTAGGAAATCATTTGATGGAAACTGCTGT--CAGGCGAACTGCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTGCTTTATCAGCATTTACT-TCTGTGGAGCTATTTAA----C-CTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTAAGTT-----TAGTCGC-ATTGTTCAATACATGTTTATAATCGTGATTGGATAAGTCTTAGCATTAA---TCATCATTGGGACTCATACTTAACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAATCTCAGTCTCCATAATTCCAATTATTCTGACTTCAGAATAATCCC
gi|11 : GGTTTGAAA----------TACCT--ATATAA-CGTGAACTTGTCTGCAATCCT-T--A--CCTTGAGTATATCAGAGTCCTATCAAATAATTTAGCAACTCCTGCCTTTATTTGTCTCTTT--GACACAGCCTA-----TGTCTCAATAGTTTACGAAATCATTTGATGGAAACTGCTAT--CAGGCGAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTGCTTTATCAGCATTTACT-TCTGTGGAGCTATTTAA----C-CTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----AAGTCGC-GTTGTTCAATACATGTTTATAATCGTGATTGGATAGGTCTTTGCATTAA---TCATCATTGGGACTCACACTTGACAAAATA-TA---TTCAAC-TC----TACTGCAAACATGCAAACTCAGTCTCCATATTTCCAATCAATCTGACTTCAGAATAATCCCa
gi|12 : GGTTTGTAA----------TATCT--CTCTCA-CGTGAACTTGTCTGCAATCCTAT--AACTCTTGAGTGTACCAGAATCGTATCAAA-------------CCTGCCT--AGTTGTCTTTTT--GAGACAGCCTA-----TTTCTCAACAGTTTACGAAATCTTTCGATGGAAACTG---T--CGGGCATATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCTACTACTTTATCAGCATTTACTGTCTGTGGATCTATTTTA----C-CACTGACAATATATACATACATTTGAA---T---AGAA-T----ATGAGCATTTAGTT-----TAGTCGC-GTTGTTCAATACATGTTTACAATCGTGCTTGGATATGGCTTTGCATCAG---TACTCATTAGTA----------ACAAAATA-TC-----AAAC-TC----TACTGCAAACAAACAAACTCAATCCCCATATTTTCAGTCATTCTGGCTTCAGAATAATCCC
gi|13 : ctagttgatgagctacaaGGTTTGTAA----------TATCT--ATATAA-CGTGAACTTGTCGGCAATCAT-T--A--TCTTGAGTATATCAGAGTACTAT--AA-AATTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGCCTA-----TGTCTCTACAGTTTA-----TCATTTGATGGAAATTGGTGT--CAGGCGAATTTCTT-TCA-TATT-----TGGTTACTTCCA--TG-GGCAATTGCTTTATCAGCATTTACT-TCTGTGGAGCTATTTAA----C-CTCTGAAGATAG-TA---ACAT---AA---T---TGAA-T----ATGGGTGTTTAGTT-----AAGTCGC-GTTGTTCAATACATGTTTATAATCTTGATTGGATAGGGTTTTGCATTAA---TCATCATTGGGACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAGTCTCCATATTTCCAATCATTCTGACTTCAGAATAATCCC
gi|14 : GGTTTGTAA----------TATCT--ATATAA-CGTGAACCTGTCTTCAATCCTAT--GACTCTTGA--ATATCAGAGTTGTATCAAATAACTTAGCATCTCCTGCCTTTATTTGTCATTTT--GACTCAGCCCA-----TGTCTCAACAGTTTACGAAAACATTTTATGGGAAATGCCGT--C-----------TT-TCA-TATT-----TGCATACTACCA--TG-GGCAACTGCTTTATCATCATTTACT-TCTGTGGAGCTATTTAA----C-CTCTGAAGGTAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTATAGTT-----TAGTCGC-GTTGTTCAATACATGTTTATAATCGTGATTGGATAGGTATTTGCACTAA---TCATCATTGGCGCTCATACTTGTCAAAATA-TT---TTCAAT-TC----TATTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCCGAATAATCCCa
gi|15 : GGTTTGTAA----------TACCT--ATATAA-CGTGAACTTGTCTGCAATCCT-T--A--TCTTGAATATATCAGAGTCCTATCAAATAATGTAGCATCTTCTTCCTTTATGTGTCTCTTT--GACACAGCCTT-----TGTCTCAACAGTTTACGAAATCATTTGATGGAAATTGCTGT--CAGGCGAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTGTTTTATCAGCATTTACT-TCTGTTGAGCTATTTAA----C-CTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----AAGGGTGTAAA-------------------GTTCAATACATATTTATAATCGTGATTTGATAGGTCTTTGCATTAA---TCATCATTGGGACTCATACTTGACAAAATA-TC---TTCATC-TT----TACTGCAAACATGCAAACTCAGTCTTCGTATTTCCAATCATTCTGACATAAGAATTATCCC
gi|16 : GGTTTGTAA----------TATCT--ATATCA-TGTGAACTTGTCTGAAATCCTATAAA--TCTTGGGTATATCAAAGTCGTATCAACTA----AGCATC-------------TGTCTCTTT--GACACAGCCTA-----TGTCTCAACAGTTTACGAAATATTTTGGTAGAAACTACAGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-AGCAACTACTTTTTCAGCATTTACT-TCTGTGGAGCTATTGCA----C--------------TA---A------AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTAGC-GTTGTCCAAGACATGTTTATAATCGTGTTTGGATAGGTATTTGCATCAA---TCATCATTGGACCTCATATTTAACAATATA-TT---TTCAAC-TC----TACTGCAAGCATGCAAACTCAATCCCAATATTTTCAGTGATTCTGACTTCAGAATAATC
gi|17 : agttgatgagcaagacGATTTGTAA----------TATCT--ATCTCA-CTTGAACTTGTCTTCAGTCATAT--AACTCTTGAGTATACCAAAATGGTATCAAATAATTCAACATCTCCTG----------------------ACAGCCTA-----TGTCTCAACAGTTTACGAAATCATTTAATGGAAACTG---T--CAGGCAAATTT--T-TCC-TACT-----TGCTTACTACCA--TA-GGCTACTACTTTATCAGCATTTACT----GTGGAGCTATTTTA----C-CACTGACGATAT-TT---ACAT---TA---T---AGAA-T----ATGGGTGCTTAGTT-----TAGTCGC-GTTGT---------GTT-AT--TCGTGCTTGAATAGGTCTTTGCATCAA---TAATTATTGGTACTCACACATAACAAAATA-TC---TTCAAT-TC----TACTGCAAACATGCAAACTCAATCCCCAAATTTCCAGTCATTCTGGCTTCAGAATA
gi|18 : tagttgatgagctagaaGGTTTGTAA----------TATCT--ATATAA-CATACACTTGTCTGCAATA-TCT--A--TCTTGAGTACATTAGAGTCGTATCAAATAATTTAGCATCTCCGGCCTTTATGTGTCTCTTC--GACACAGCATA-----TGGTTAAACAGTTTACGAAATCATTTGATGGAAACTGCTGT----GGCAA---------------C-----TGCTT--TATCA------GCA---------------TTTACT-TCTGTGGAACAATTTAA----C-CTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATTGGTGTTTAGTT-----TAGTCGC-CTTGTTCAATACATGTTTATAATCGGGATTTGATACAACTTTGCATTTA---TCATCGTTGGTACTCATACTTGACAATATG-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCTGAATAATCC
gi|19 : GGTTTGTAA----------TATCT--ATATAA-CATGAACTTGTCTGCAATCCT-T--A--TCTTGAGTGTATCGGAGTCCTATCAAATAATTTAGTATCTCCTGCCTTTATGTGTCTCTTT--GACACAGCATA-----TGGTTAAACAGTTTACGAAATCATTGGATGGAAACTGCTGT----GGCAA---------------C-----TGCTT--TATCA------GCA---------------TTTACT-TCTGTGGAGCTATTGAA----C-CTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----AAGTCGC-GTTGTTCAATACATGTTTATAATCGTGATTGGATAGGTCTTTGCATTAA---TCATCATCGGTACTCATACTTGACAAAATA-TC---TTCACC-TC----TGTTGCCAACATGCAAACTCAATCCCTATATTTCCAGTCATTCTGATTTCAGAATAAT
gi|2 : GGTTTTTAA----------TATCC--ATATCA-CGTGAACGTGTCTACATTACTAT--AACTCTTGAGTGTATCAGAATCGTAT---ATAAT--AACATCTCCTGCCTTTATGCATCTCTTT--GACA----------------------GTTTTCGAAATCTTTTGAGGGAAACTG---T--CAGGCAAGTTTCTT-TTA-TATT-----TGCATATTACCA--TG-GGCTACTACTTTATGAGGATTTACTGTCTGGGGAGATATTTTA----C-CGCTGACAACAT-TT---ACAT---AA---T---AGAATT----TTGGGTATTTTGTT-----TGGTCGC-ATTGATAAAGATATAATC-TAATTGTGTT
gi|2 : tattaataagctggaaTGTTTGGATAGATCTTTGCAACAA---TTATCAGTGGTACTCATACTTGACAAA-TA-T-----TCAAA-TC----TACTGTAAGCATGCAAACTCAATCGCCATATTTTCCGTCATTCTAACTTGAGAATAATCCCcttatctctcaatgtcctaagaatctaaacttacatttctacatttcatattttctttatgtttggatagatctttgcaacaattatcagtggtactcatacttgacaaatattcaaatctactgtaagcatgcaaactcaatcgccatattttccgtcattctaacttgagaataatccc
gi|20 : tattaataagctggaaggtttttaatatccatatcacgtgaacgtgtctacattactataactcttgagtgtatcagaatcgtatataataacatctcctgcctttatgcatctctttgacagttttcgaaatcttttgagggaaactgtcaggcaagtttcttttatatttgcatattaccatgggctactactttatgaggatttactgtctggggagatattttaccgctgacaacatttacataatagaattttgggtattttgtttggtcgcattgataaagatataatctaattgtgttcttatctctcaatgtcctaagaatctaaacttacatttctacatttcatattttctttaGGTTTGTAA----------TATCT--ATATAA-CATGAACTTGTCTGCAATCCT-T--A--TCTTGAGTATATCAGAGTCGTATTAAA-AATTTAGCATCTCCTGCCTTAACGTGTCTCTTT--GACACAGCATA-----TGGTTAAACAGTATACGAAATCATTTGATGGAAACTGCTGC----GGCAA---------------C-----TGCTT--TATCA------GCA---------------TTTACT-TCTGTGGAGCTATTTAA----CAT-CTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTCGC-GTTGTTCAATATATGTTTATAATTGTGATTGGATAGGTCTTTGCATTAA---TCATCATTGGTACGCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCAGAATAAT
gi|21 : GGTTTGTAA----------TATCT--ATATAA-CGTGAACTTGTCTGCAATCCT-T--A--TATTGAATATATCAGAGTCGTATCAAATAATT-AGCATCTCCTGCCTTTATGTGTCTCTTT--GACACAGCATA-----TAGTAAAACAGTTTACGAAACCATTTGATGGAAACTTCTGT----GGCAA---------------C-----TGCTT-----TA--TA-AGCA-----TTT----------ACT-TCTGTGGAGCTATTGAA----C-CTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----AT-AGTGTTTAGTT-----TAGTCGC-GTTGTTCAATACATGTTTATTATTGTGATTAGATAGGTCTTTGCATTAA---TCATCATTACTACTCATACTTGACAAAATA-TC---TTCAGC-TG----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCAGAATA
gi|22 : GGTTTGTAA----------TATCT--ATATAA-CGTGAACTTTTCTGCAATCCT-T--A--TCTTGAGTATTTCAGAGTCGTATCAAATAATTTAGCATCTCCTGCCTTTATGTGTCTCTTT--GACACAGCCTA-----TGGTTAAACAGTTTACGAAATCATTTGATGGAAACTGCTGT----GGTAACTGTTTTATCAGTATT-----TACTT----CTG--TG-G--AGCTA-TTTA---------ACC-TC------------------------TGAAGATAT-TA---ACAT---AA---T---AGAA-T----TTGATTGTTTAGTT-----TAGTCGC-TTTGTTCAATACATGTTTAT-ATCGTGATTGAATAGGTCTTTGCATTGA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATGCCCATATTTCCAATct
gi|23 : TTTGTTA----------TATCT--ATATCA-CGTGAACTT-------------T-----TCTCGAGTATATTAGAGTCGTATCAAATAATTCAGCATCTCCTGCCTTTATTTGTCTATTTAAGACACATCCTA-----TGTCTCAACAGTTTACGTAATATTTTGATGTAAACTGCTGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACAA--TG-GGtc
gi|23 : tagttgatgagctagaagtGTCTTTATCTCAG---TCATCATTGGTACTCATGCTTGGCAAAATA-TC---TTCAAC-TC----TACTGTAAACATACAAACTCAATCCCCATATATCCAGCAATTCTGACTTCAGAATttacataatagaacatatgtgtctttatctcagtcatcattggtactcatgcttggcaaaatatcttcaactctactgtaaacatacaaactcaatccccatatatccagcaattctgacttcagaat
gi|24 : tagttgatgagctagaagttttgttatatctatatcacgtgaacttttctcgagtatattagagtcgtatcaaataattcagcatctcctgcctttatttgtctatttaagacacatcctatgtctcaacagtttacgtaatattttgatgtaaactgctgtcaggcaaatttctttcatatttgcttactacaatgggttacataatagaacatatgtCTCAACAGTTTACGAAATCATTTAATGGAAACTGCTGT--CGGGCAAATTTCTT-TCA-TATT-----TGCTAACTACCA--CG-GGCAACTGCTTTATCATCATTTACT-TCTGTGGAGCTATTTAA----C-CTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTTTAGTCTAGTCGC-GTTGTTCAATACATGTTT-CAATTGTGATTGGATAGGTCTTTGCATTAA---TCATCATTGGTACCCATACTTGACAAAATA-TC---TTCAAC-TC----TGCTGC--ACATGCAAACTCAATCTCCTTATTTCCAGTCATTCTGACTTCAGAATAATCC
gi|25 : GGTTTGTAA----------TATCT--ATCTAA-CGTGAACTTGTCTGTTATCCTAT--AACTCTTGAGTATACCTGAATAGTATCAAATAATTTAGCATCTCCTGCCTTTAGTTGTCTCTTT--GAGACAGCCTA-----TGTCTCAACAGTATACGGAATCATTTGATGGAAA---CAGT--AAGATAATTTTCTT-TCA-TATT-----TGCTTACTTCTA--TG-GGCTACTAATTTATCAGCATTTACTGTCTGTCGATTTATT
gi|26 : tagttgatgagctagacGGTTTGTAA----------TATCT--ATAAAA-CGTGAACTTATCTGCAA--------A--ACTT----------AAGTTGTATCAAATAA-TTAGGATCTCCTGCCTTTATTTGTCTCTTT--GACACAGCCTA-----TGTCTCAACAGTTTACGAAATCATTTGATGGAAACTGCTGT--CAGGTAAATTTCTT-TCA-TATT-----TGCTTACAACC
gi|27 : TCGC-GTTGTTCAATACATGTTTACAATCGTGCTTGGATAGGTC----------------------------ATGCATGACAAAATA-TC---TTCATT-TC----TACTTCAAAAA-GCAAACTCAGTCCCAATAGTTTCTGTCATTCTGACTTAAGAATATTCC
gi|28 : GGTCTTTACATTAA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCATTCCTCATATTTCCAGTCATTCTGACTTCAGAATAa
gi|3 : accGGTTT-TAA----------TATTT--ATATTA-CGTGAACTTGTCTGCAATCCTAT--AACTCTTCAGTATATCAGAATTGTATCAAATAATTTTCCATCTCCTGCCTTTACTTGTCTCTTT--GCTATAGTCCA-----TGTCTCAATAGTTTTCGAAATCGTTTGATGGAAA---CTGT--CAGGTAAGTTTCTT-TCA-TATT-----TGCTTACTATCATTTA-GG---CTAATTAATCAGCATTTAC--------GGTCTATTTTA----C-CACTGACGATAT-TT---ACAT---AG---T---ATAA-T----CTTGGTGTTTAGTT-----TGGTCGC-GTTGGTTAATACATGTTTCTAATTGTGtt
gi|3 : ctagttgatgaactagaaTGCTTGGATATGTCTTTG---TAAGGCTCATCACTGGTATCCATACTTGACAAATCC-TC---TTCAAC-TC----TACTGCAAACATAAAAACCCAATCCCCATATTTGCAGTCAATCTGtgtttatctctcattgtctttagaatctaaacttattctacatttcatttttaccttatgcttggatatgtctttgtaaggctcatcactggtatccatacttgacaaatcctcttcaactctactgcaaacataaaaacccaatccccatatttgcagtcaatctg
gi|30 : ctagttgatgaactagaaggttttaatatttatattacgtgaacttgtctgcaatcctataactcttcagtatatcagaattgtatcaaataattttccatctcctgcctttacttgtctctttgctatagtccatgtctcaatagttttcgaaatcgtttgatggaaactgtcaggtaagtttctttcatatttgcttactatcatttaggctaattaatcagcatttacggtctattttaccactgacgatatttacatagtataatcttggtgtttagtttggtcgcgttggttaatacatgtttctaattgtgtgtttatctctcattgtctttagaatctaaacttattctacatttcatttttaccttaGGTTTGTAA----------TATCT--ATATCA-TGTGAACTTGTCTTCAGTCCTATAAA--TCTTGAGTATATC--AGTTGTAT
gi|31 : tagttgatgagctagaaTGGGTGTGTAGCT-----GGGACGC-GTTGATCAAAACATATTTCTAATCGTGTT
gi|4 : GGTTTGTCA----------TATCT--ACATCA-TGTGAACTTGTCTGCAATCCTTT--AACTCTTTAGTATATCAGAGTCATATAAAATAATTTACCATCTCCTGCCTTTATTTGTCCCTTT--GACACAGCCTA-----TGCC-CAACAGTTTACGAAATCTTTTGATGGAAACTGCTGTGTCAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACAA--TG-GGAAACTACTTTATCAGCATTTACT-TTTGTGGAGCTATTTGA----C-CACTGACGGCAT-TT---ACAT---AA---TTGTACAA-TGTAAATGGGTGTTTAGTT-----TAGTCGCAGTT-TTCAATACATGTATATAATCGTGTTTGGATAGGTGTTTGCATCAA---TAATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAT-TC----TACTGCAGACATGCAAACTCAATCCCCATATGTCCAGTCATTCTGACTTCAGAATAATCcttagaatttaagtttattctacatttatttct
gi|5 : ctagttcatgagctagaaA----------TATCT--ATTTCG-CATGAACTTGCCTTCACTTATTT--AACTCTTAAATATACAATATTTATATCAAGTAATTTGTCATCTTCTTTCTTTATTCGTTTCTTT--GACAAAAACTG-----TGACTCAACAGTTTATGACAT-AGTCGATGGAAA---CTGT--CAAACAAGTTTCTA-TCA-CATT-----TGATTGCTATC---TGCGGCTACTGCGTTTCCATTATTTACTGTCTGGGGAG----------------------------A---ACAT------------------------GGGTGTTTAGTT-----GGGTCGT-GTTGATCAATACATATTTTTAATCGTATTCG--TA--TCTTT-CATT
gi|5 : tagttcgtcagctagatataattggTGCTTGAATTATTCTTTGCATT------CACCATTGGTACTCATACCTTAC-AAATATTC---TTCAAG-TG----TACTGAAAAC------------TCCCCATATTTTCAATGATTCTGgtcctgataatctgaacttactgtacattccatttcttctttatgcttgaattattctttgcattcaccattggtactcataccttacaaatattcttcaagtgtactgaaaactccccatattttcaatgattctgtattc
gi|6 : tagttcgtcagctagatataattggatatctatttcgcatgaacttgccttcacttatttaactcttaaatatacaatatttatatcaagtaatttgtcatcttctttctttattcgtttctttgacaaaaactgtgactcaacagtttatgacatagtcgatggaaactgtcaaacaagtttctatcacatttgattgctatctgcggctactgcgtttccattatttactgtctggggagaacatgggtgtttagttgggtcgtgttgatcaatacatatttttaatcgtattcgtatctttcattgtcctgataatctgaacttactgtacattccatttcttctttaGATTTGTAA----------TATCT--ATATCATCGT-AACTTGTCTGCAATCTTAT--AACTCTTTAGTATATCAGAGTTTTATAAAATAATTTACCATCTCCTAACTGTATTTGTCTCTTT--GACACAGCCTA-----TATC-CAACAGTTCACGAAAT-ATTT---------TGATGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTAACTACCA--TG-GGAAACTACTTTATCAGCATTTACG-TTTGTTAAGCTATTTAA----C-CACTGACAATAT-TA---ACAT---AAAAGT---ACAA-TGTATATGGGTGTTTAGTT-----TAGTTGC-ATTTTTCAATACATGTATAAAATCGTTCTTAGAAAGGTCTTTGTATCAG---TCATCATAGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTTCATCCCCATATGTCCAGTCATTCTGACTTCAGAACAATCtattc
gi|7 : ctagttcatgagctagaaGGTTTGTAA----------TATCT--GTATCA-CGTGAACTTGTCTACAAT--TGA--C--TCTTGAGTATATCAGAGTTTAAGCAAATACTTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGCGTT-----TGTCTCAACAGTTTACGACATCTTTAGATGGAAACTGCTGT--CCGGCAAATTTCTT-TCG-TATT-----TGCTTGCTACCA--TG-GGCATCTACTTTATCAGCATTTATT-TCTGTGGAACTATTTTA----C-CACTGACAATAT-TA---ACAT---AA---T---TGAT-T----ATGGGTGTTTAGTT-----TAGTCGC-GTTGTTCAATACATGTATATAATTGTGCTTGAGTATGTCTTTGCATCAA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACT---ATCATGCAAACTGAATCCCCATTTTTCCATTCATTCTGACTTCAGAATAAT
gi|8 : ctagttgatgagctaaaaGGTTTGTAA----------TAACT--ATATAA-CGTGAACTTGTCTGCAATCCT-T--A--TCTTGAGTATATCAGAGTCCTATCAAATAATTTAGCATCTCCTGCCTTTATTTATCTCTTT--GACACAGCCTA-----TGTCTCAACAGTTTCTGAAATCATTTGATGGAAACTGCTGT--CAGGTGAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTGCTTTATCAGCATTTACT-TCTGTGGAGCTATTTAATAACC-T-CTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTCGC-ATTGCTCAATACATGTTT-TAATTGTGATTTGATAGGTCTTTGCATAAA---TCATCATTGGGAATCATACTTGACAAAATA-TC---TTTAAC-TCTTAGTACTGCAAACATGCAAACTCAGTCTCCATATTTCCAATCATTCTGACTTCAGAATAACCCCa
gi|9 : GGTTTGTAAATACAGGAGCCATCT--ATATCA-CAGGCAC--GT--GCAATCCTAT--AACTCTTGTGTATACCAGAAGCGTATAAAATAATTTAACATCTTCTGCCTTTATTCGTCTCTTT--GAGATAGCATAAAGTATGTCTCAACAGTTTACGAAATCATTTGCTAGAA----CTAC--CAGGCCAATTTCTT-TCA-CATT-----TGCTTACTACCA--TG-GGC---TATT----CAGCATTTACTGTCTATGAAGCTGTTTTA----C-CGCTGACTATAT-AT---ACAT---AA---T---ATAA------A---------AGAT-----TAGTCGC-GTTGTTCAATACATGTTTATTATCGTGCTTGGATAGGTATTTGCATCAA---TCATCATTG-------TACTTGACAAAAAA---------AATATC----TACTACAAACATGCAAATTCAGCCCTTATATTTCTAGTAAATTTGGCTTCAGAATAATCCa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): GCATACTGTATCCCAATAGTTTCAGTGATTCTTCCTTCGGAATTATTCCAATTATACTATGCACATGTGTCATTAACATGGTTTCAACGAAGATATCACTCCACAA
Alignments
lowQualScore : 111111
lowQualScore : 6666666666 22 1 1 1 333333 22 44444 222 3 1 1 33333 1 22 3 0 8 222 1 2 2 1 333 333 333 333 1 7777 44444 1 0 1 222 1 222 1 3333
lowQualScore : .......... .. . . . ...... .. ..... ... . . . ..... . .. . . . ... . . . . ... ... ... ... . .... ..... . . . ... . ... . ....
lowQualScore : 7777777777 11 0 5 5 777777 22 00000 777 1 5 5 88888 6 22 5 2 3 999 7 2 1 7 000 000 000 000 7 4444 22222 6 8 0 777 5 777 5 3333
consensus : GGTTTGTAA----------TATCT--ATATNA-CGTGAACTTGTCTGCAAT-CCT-ATAACTCTTGAGTATATCAGAGTCGTATCAAATAATTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----CTATGTCTCAACAGTTTACGAAATCATTTGATGGAAACTGCTGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACCA--TGGGCAACTACTTTATCAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTCGC-GTTGTTCAATACATGTTTATAATCGTGNTTGGATAGGTCTTTGCATTAA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCAGAATAATCCC
Reference ( family-916 ) : GGTTTGTAA----------TATCT--ATATNA-CGTGAACTTGTCTGCAAT-CCT-ATAACTCTTGAGTATATCAGAGTCGTATCAAATAATTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----CTATGTCTCAACAGTTTACGAAATCATTTGATGGAAACTGCTGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACCA--TGGGCAACTACTTTATCAGCATTTACT-TCTGTGGAGCTATT---TAACCNCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTCGC-GTTGTTCAATACATGTTTATAATCGTGNTTGGATAGGTCTTTGCATTAA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCAGAATAATCCC
gi|1 : GGTTTTTAA----------TATTTTGGTATCC-CGTGATCTTGTCTGCAAT-CCT-ATACTTCTTGAGTATAACAGTATCGTATAAAAAAACT--ACATCTTCTGCCTTTATTTGTCTCTTT--GACATAGC-----CT-TGTATGAACTGTTTTCAAAATATTTTGATGGAAACTGC-----CAGGTAAATTTATT-TC--TGTTCACCGTGATTACTACCA--AAGGCTACTACTGTTTAAGCATTTACTGTCTGCGAAACTATT---TTAC-------GATAC-TT---TCAT---AG---A---ATAA-T----CTTGTTGTTAAGTT-----TTGTCGC-ATTGATCGATACATGTTTCAAATC-TGTT
gi|1 : ctaattgataaactagaaTGCTTCGATAGGTCTTTGCATGAA---TCATCATTGGTACTAATACTTGACAA---A-TCTGTTTCAAG-TC----TACTGCAAGCGTACAAACTCAATTGCCATATTTTCAGTCATTCTGGTTTCAAAATGATCCcttatctttcattgtccttataagctgaacttattttacatatcatttcttccttatgcttcgataggtctttgcatgaatcatcattggtactaatacttgacaaatctgtttcaagtctactgcaagcgtacaaactcaattgccatattttcagtcattctggtttcaaaatgatcc
gi|10 : ctaattgataaactagaaggtttttaatattttggtatcccgtgatcttgtctgcaatcctatacttcttgagtataacagtatcgtataaaaaaactacatcttctgcctttatttgtctctttgacatagccttgtatgaactgttttcaaaatattttgatggaaactgccaggtaaatttatttctgttcaccgtgattactaccaaaggctactactgtttaagcatttactgtctgcgaaactattttacgatactttcatagaataatcttgttgttaagttttgtcgcattgatcgatacatgtttcaaatctgttcttatctttcattgtccttataagctgaacttattttacatatcatttcttccttaGGTTTGTAA----------TACCT--ATATAA-CGTGAACTTGTCTGCAAT-CCT--TA--TCTTGAGTATATCAGAGTCCTATCAAATAATTTAGCATCTCCTGCTTTTATTTGTCTCTTT--GACACAGC-----CTATGCCTCAACAGTTTAGGAAATCATTTGATGGAAACTGCTGT--CAGGCGAACTGCTT-TCA-TATT-----TGCTTACTACCA--TGGGCAACTGCTTTATCAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTAAGTT-----TAGTCGC-ATTGTTCAATACATGTTTATAATCGTGATTGGATAAGTCTTAGCATTAA---TCATCATTGGGACTCATACTTAACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAATCTCAGTCTCCATAATTCCAATTATTCTGACTTCAGAATAATCCC
gi|11 : GGTTTGAAA----------TACCT--ATATAA-CGTGAACTTGTCTGCAAT-CCT--TA--CCTTGAGTATATCAGAGTCCTATCAAATAATTTAGCAACTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----CTATGTCTCAATAGTTTACGAAATCATTTGATGGAAACTGCTAT--CAGGCGAATTTCTT-TCA-TATT-----TGCTTACTACCA--TGGGCAACTGCTTTATCAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----AAGTCGC-GTTGTTCAATACATGTTTATAATCGTGATTGGATAGGTCTTTGCATTAA---TCATCATTGGGACTCACACTTGACAAAATA-TA---TTCAAC-TC----TACTGCAAACATGCAAACTCAGTCTCCATATTTCCAATCAATCTGACTTCAGAATAATCCCa
gi|12 : GGTTTGTAA----------TATCT--CTCTCA-CGTGAACTTGTCTGCAAT-CCT-ATAACTCTTGAGTGTACCAGAATCGTATCAAA-------------CCTGCCT--AGTTGTCTTTTT--GAGACAGC-----CTATTTCTCAACAGTTTACGAAATCTTTCGATGGAAACTG---T--CGGGCATATTTCTT-TCA-TATT-----TGCTTACTACCA--TGGGCTACTACTTTATCAGCATTTACTGTCTGTGGATCTATT---TTACCACTGACAATATATACATACATTTGAA---T---AGAA-T----ATGAGCATTTAGTT-----TAGTCGC-GTTGTTCAATACATGTTTACAATCGTGCTTGGATATGGCTTTGCATCAG---TACTCATTAGTA----------ACAAAATA-TC-----AAAC-TC----TACTGCAAACAAACAAACTCAATCCCCATATTTTCAGTCATTCTGGCTTCAGAATAATCCC
gi|13 : ctagttgatgagctacaaGGTTTGTAA----------TATCT--ATATAA-CGTGAACTTGTCGGCAAT-CAT--TA--TCTTGAGTATATCAGAGTACTAT--AA-AATTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----CTATGTCTCTACAGTTTA-----TCATTTGATGGAAATTGGTGT--CAGGCGAATTTCTT-TCA-TATT-----TGGTTACTTCCA--TGGGCAATTGCTTTATCAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAG-TA---ACAT---AA---T---TGAA-T----ATGGGTGTTTAGTT-----AAGTCGC-GTTGTTCAATACATGTTTATAATCTTGATTGGATAGGGTTTTGCATTAA---TCATCATTGGGACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAGTCTCCATATTTCCAATCATTCTGACTTCAGAATAATCCC
gi|14 : GGTTTGTAA----------TATCT--ATATAA-CGTGAACCTGTCTTCAAT-CCT-ATGACTCTTGA--ATATCAGAGTTGTATCAAATAACTTAGCATCTCCTGCCTTTATTTGTCATTTT--GACTCAGC-----CCATGTCTCAACAGTTTACGAAAACATTTTATGGGAAATGCCGT--C-----------TT-TCA-TATT-----TGCATACTACCA--TGGGCAACTGCTTTATCATCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGGTAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTATAGTT-----TAGTCGC-GTTGTTCAATACATGTTTATAATCGTGATTGGATAGGTATTTGCACTAA---TCATCATTGGCGCTCATACTTGTCAAAATA-TT---TTCAAT-TC----TATTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCCGAATAATCCCa
gi|15 : GGTTTGTAA----------TACCT--ATATAA-CGTGAACTTGTCTGCAAT-CCT--TA--TCTTGAATATATCAGAGTCCTATCAAATAATGTAGCATCTTCTTCCTTTATGTGTCTCTTT--GACACAGC-----CTTTGTCTCAACAGTTTACGAAATCATTTGATGGAAATTGCTGT--CAGGCGAATTTCTT-TCA-TATT-----TGCTTACTACCA--TGGGCAACTGTTTTATCAGCATTTACT-TCTGTTGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----AAGGGTGTAAA-------------------GTTCAATACATATTTATAATCGTGATTTGATAGGTCTTTGCATTAA---TCATCATTGGGACTCATACTTGACAAAATA-TC---TTCATC-TT----TACTGCAAACATGCAAACTCAGTCTTCGTATTTCCAATCATTCTGACATAAGAATTATCCC
gi|16 : GGTTTGTAA----------TATCT--ATATCA-TGTGAACTTGTCTGAAAT-CCT-ATAAATCTTGGGTATATCAAAGTCGTATCAACTA----AGCATC-------------TGTCTCTTT--GACACAGC-----CTATGTCTCAACAGTTTACGAAATATTTTGGTAGAAACTACAGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACCA--TGAGCAACTACTTTTTCAGCATTTACT-TCTGTGGAGCTATT--------GC-------AC-TA---A------AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTAGC-GTTGTCCAAGACATGTTTATAATCGTGTTTGGATAGGTATTTGCATCAA---TCATCATTGGACCTCATATTTAACAATATA-TT---TTCAAC-TC----TACTGCAAGCATGCAAACTCAATCCCAATATTTTCAGTGATTCTGACTTCAGAATAATC
gi|17 : agttgatgagcaagacGATTTGTAA----------TATCT--ATCTCA-CTTGAACTTGTCTTCAGT-CAT-ATAACTCTTGAGTATACCAAAATGGTATCAAATAATTCAACATCTCCTG----------------------ACAGC-----CTATGTCTCAACAGTTTACGAAATCATTTAATGGAAACTG---T--CAGGCAAATTT--T-TCC-TACT-----TGCTTACTACCA--TAGGCTACTACTTTATCAGCATTTACT----GTGGAGCTATT---TTACCACTGACGATAT-TT---ACAT---TA---T---AGAA-T----ATGGGTGCTTAGTT-----TAGTCGC-GTTGT---------GTT-AT--TCGTGCTTGAATAGGTCTTTGCATCAA---TAATTATTGGTACTCACACATAACAAAATA-TC---TTCAAT-TC----TACTGCAAACATGCAAACTCAATCCCCAAATTTCCAGTCATTCTGGCTTCAGAATA
gi|18 : tagttgatgagctagaaGGTTTGTAA----------TATCT--ATATAA-CATACACTTGTCTGCAATATCT-AT----CTTGAGTACATTAGAGTCGTATCAAATAATTTAGCATCTCCGGCCTTTATGTGTCTCTTC--GACACAGC-----ATATGGTTAAACAGTTTACGAAATCATTTGATGGAAACTGCTGT----GGCAA---------------C-----TGCTT--TATCA-----GCA---------------TTTACT-TCTGTGGAACAATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATTGGTGTTTAGTT-----TAGTCGC-CTTGTTCAATACATGTTTATAATCGGGATTTGATACAACTTTGCATTTA---TCATCGTTGGTACTCATACTTGACAATATG-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCTGAATAATCC
gi|19 : GGTTTGTAA----------TATCT--ATATAA-CATGAACTTGTCTGCAAT-CCT--TA--TCTTGAGTGTATCGGAGTCCTATCAAATAATTTAGTATCTCCTGCCTTTATGTGTCTCTTT--GACACAGC-----ATATGGTTAAACAGTTTACGAAATCATTGGATGGAAACTGCTGT----GGCAA---------------C-----TGCTT--TATCA-----GCA---------------TTTACT-TCTGTGGAGCTATT---GAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----AAGTCGC-GTTGTTCAATACATGTTTATAATCGTGATTGGATAGGTCTTTGCATTAA---TCATCATCGGTACTCATACTTGACAAAATA-TC---TTCACC-TC----TGTTGCCAACATGCAAACTCAATCCCTATATTTCCAGTCATTCTGATTTCAGAATAAT
gi|2 : GGTTTTTAA----------TATCC--ATATCA-CGTGAACGTGTCTACATT-ACT-ATAACTCTTGAGTGTATCAGAATCGTAT---ATAAT--AACATCTCCTGCCTTTATGCATCTCTTT--GACA----------------------GTTTTCGAAATCTTTTGAGGGAAACTG---T--CAGGCAAGTTTCTT-TTA-TATT-----TGCATATTACCA--TGGGCTACTACTTTATGAGGATTTACTGTCTGGGGAGATATT---TTACCGCTGACAACAT-TT---ACAT---AA---T---AGAATT----TTGGGTATTTTGTT-----TGGTCGC-ATTGATAAAGATATAATC-TAATTGTGTT
gi|2 : tattaataagctggaaTGTTTGGATAGATCTTTGCAACAA---TTATCAGTGGTACTCATACTTGACAAA-TA-T-----TCAAA-TC----TACTGTAAGCATGCAAACTCAATCGCCATATTTTCCGTCATTCTAACTTGAGAATAATCCCcttatctctcaatgtcctaagaatctaaacttacatttctacatttcatattttctttatgtttggatagatctttgcaacaattatcagtggtactcatacttgacaaatattcaaatctactgtaagcatgcaaactcaatcgccatattttccgtcattctaacttgagaataatccc
gi|20 : tattaataagctggaaggtttttaatatccatatcacgtgaacgtgtctacattactataactcttgagtgtatcagaatcgtatataataacatctcctgcctttatgcatctctttgacagttttcgaaatcttttgagggaaactgtcaggcaagtttcttttatatttgcatattaccatgggctactactttatgaggatttactgtctggggagatattttaccgctgacaacatttacataatagaattttgggtattttgtttggtcgcattgataaagatataatctaattgtgttcttatctctcaatgtcctaagaatctaaacttacatttctacatttcatattttctttaGGTTTGTAA----------TATCT--ATATAA-CATGAACTTGTCTGCAAT-CCT--TA--TCTTGAGTATATCAGAGTCGTATTAAA-AATTTAGCATCTCCTGCCTTAACGTGTCTCTTT--GACACAGC-----ATATGGTTAAACAGTATACGAAATCATTTGATGGAAACTGCTGC----GGCAA---------------C-----TGCTT--TATCA-----GCA---------------TTTACT-TCTGTGGAGCTATT---TAACATCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTCGC-GTTGTTCAATATATGTTTATAATTGTGATTGGATAGGTCTTTGCATTAA---TCATCATTGGTACGCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCAGAATAAT
gi|21 : GGTTTGTAA----------TATCT--ATATAA-CGTGAACTTGTCTGCAAT-CCTTATA----TTGAATATATCAGAGTCGTATCAAATAATT-AGCATCTCCTGCCTTTATGTGTCTCTTT--GACACAGC-----ATATAGTAAAACAGTTTACGAAACCATTTGATGGAAACTTCTGT----GGCAA---------------C-----TGCTT-----TA--TAAGCA-----TTT----------ACT-TCTGTGGAGCTATT---GAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----AT-AGTGTTTAGTT-----TAGTCGC-GTTGTTCAATACATGTTTATTATTGTGATTAGATAGGTCTTTGCATTAA---TCATCATTACTACTCATACTTGACAAAATA-TC---TTCAGC-TG----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCAGAATA
gi|22 : GGTTTGTAA----------TATCT--ATATAA-CGTGAACTTTTCTGCAAT-CCT--TA--TCTTGAGTATTTCAGAGTCGTATCAAATAATTTAGCATCTCCTGCCTTTATGTGTCTCTTT--GACACAGC-----CTATGGTTAAACAGTTTACGAAATCATTTGATGGAAACTGCTGT----GGTAACTGTTTTATCAGTATT-----TACTT----CTG--TGG--AGCTA-TTTA---------ACC-TC----------------------TGAAGATAT-TA---ACAT---AA---T---AGAA-T----TTGATTGTTTAGTT-----TAGTCGC-TTTGTTCAATACATGTTTAT-ATCGTGATTGAATAGGTCTTTGCATTGA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATGCCCATATTTCCAATct
gi|23 : TTTGTTA----------TATCT--ATATCA-CGTGAACTT------------------TTCTCGAGTATATTAGAGTCGTATCAAATAATTCAGCATCTCCTGCCTTTATTTGTCTATTTAAGACACATC-----CTATGTCTCAACAGTTTACGTAATATTTTGATGTAAACTGCTGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACAA--TGGGtc
gi|23 : tagttgatgagctagaagtGTCTTTATCTCAG---TCATCATTGGTACTCATGCTTGGCAAAATA-TC---TTCAAC-TC----TACTGTAAACATACAAACTCAATCCCCATATATCCAGCAATTCTGACTTCAGAATttacataatagaacatatgtgtctttatctcagtcatcattggtactcatgcttggcaaaatatcttcaactctactgtaaacatacaaactcaatccccatatatccagcaattctgacttcagaat
gi|24 : tagttgatgagctagaagttttgttatatctatatcacgtgaacttttctcgagtatattagagtcgtatcaaataattcagcatctcctgcctttatttgtctatttaagacacatcctatgtctcaacagtttacgtaatattttgatgtaaactgctgtcaggcaaatttctttcatatttgcttactacaatgggttacataatagaacatatgtCTCAACAGTTTACGAAATCATTTAATGGAAACTGCTGT--CGGGCAAATTTCTT-TCA-TATT-----TGCTAACTACCA--CGGGCAACTGCTTTATCATCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTTTAGTCTAGTCGC-GTTGTTCAATACATGTTT-CAATTGTGATTGGATAGGTCTTTGCATTAA---TCATCATTGGTACCCATACTTGACAAAATA-TC---TTCAAC-TC----TGCTGC--ACATGCAAACTCAATCTCCTTATTTCCAGTCATTCTGACTTCAGAATAATCC
gi|25 : GGTTTGTAA----------TATCT--ATCTAA-CGTGAACTTGTCTGTTAT-CCT-ATAACTCTTGAGTATACCTGAATAGTATCAAATAATTTAGCATCTCCTGCCTTTAGTTGTCTCTTT--GAGACAGC-----CTATGTCTCAACAGTATACGGAATCATTTGATGGAAA---CAGT--AAGATAATTTTCTT-TCA-TATT-----TGCTTACTTCTA--TGGGCTACTAATTTATCAGCATTTACTGTCTGTCGATTTATT---
gi|26 : tagttgatgagctagacGGTTTGTAA----------TATCT--ATAAAA-CGTGAACTTATCTGCAA--------AACT------TA------AGTTGTATCAAATAA-TTAGGATCTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----CTATGTCTCAACAGTTTACGAAATCATTTGATGGAAACTGCTGT--CAGGTAAATTTCTT-TCA-TATT-----TGCTTACAACC
gi|27 : TCGC-GTTGTTCAATACATGTTTACAATCGTGCTTGGATAGGTC----------------------------ATGCATGACAAAATA-TC---TTCATT-TC----TACTTCAAAAA-GCAAACTCAGTCCCAATAGTTTCTGTCATTCTGACTTAAGAATATTCC
gi|28 : GGTCTTTACATTAA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCATTCCTCATATTTCCAGTCATTCTGACTTCAGAATAa
gi|3 : accGGTTT-TAA----------TATTT--ATATTA-CGTGAACTTGTCTGCAAT-CCT-ATAACTCTTCAGTATATCAGAATTGTATCAAATAATTTTCCATCTCCTGCCTTTACTTGTCTCTTT--GCTATAGT-----CCATGTCTCAATAGTTTTCGAAATCGTTTGATGGAAA---CTGT--CAGGTAAGTTTCTT-TCA-TATT-----TGCTTACTATCATTTAGG---CTAATTAATCAGCATTTAC--------GGTCTATT---TTACCACTGACGATAT-TT---ACAT---AG---T---ATAA-T----CTTGGTGTTTAGTT-----TGGTCGC-GTTGGTTAATACATGTTTCTAATTGTGtt
gi|3 : ctagttgatgaactagaaTGCTTGGATATGTCTTTG---TAAGGCTCATCACTGGTATCCATACTTGACAAATCC-TC---TTCAAC-TC----TACTGCAAACATAAAAACCCAATCCCCATATTTGCAGTCAATCTGtgtttatctctcattgtctttagaatctaaacttattctacatttcatttttaccttatgcttggatatgtctttgtaaggctcatcactggtatccatacttgacaaatcctcttcaactctactgcaaacataaaaacccaatccccatatttgcagtcaatctg
gi|30 : ctagttgatgaactagaaggttttaatatttatattacgtgaacttgtctgcaatcctataactcttcagtatatcagaattgtatcaaataattttccatctcctgcctttacttgtctctttgctatagtccatgtctcaatagttttcgaaatcgtttgatggaaactgtcaggtaagtttctttcatatttgcttactatcatttaggctaattaatcagcatttacggtctattttaccactgacgatatttacatagtataatcttggtgtttagtttggtcgcgttggttaatacatgtttctaattgtgtgtttatctctcattgtctttagaatctaaacttattctacatttcatttttaccttaGGTTTGTAA----------TATCT--ATATCA-TGTGAACTTGTCTTCAGT-CCT-ATAAATCTTGAGTATATC--AGTTGTAT
gi|31 : tagttgatgagctagaaTGGGTGTGTAGCT-----GGGACGC-GTTGATCAAAACATATTTCTAATCGTGTT
gi|4 : GGTTTGTCA----------TATCT--ACATCA-TGTGAACTTGTCTGCAAT-CCT-TTAACTCTTTAGTATATCAGAGTCATATAAAATAATTTACCATCTCCTGCCTTTATTTGTCCCTTT--GACACAGC-----CTATGCC-CAACAGTTTACGAAATCTTTTGATGGAAACTGCTGTGTCAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACAA--TGGGAAACTACTTTATCAGCATTTACT-TTTGTGGAGCTATT---TGACCACTGACGGCAT-TT---ACAT---AA---TTGTACAA-TGTAAATGGGTGTTTAGTT-----TAGTCGCAGTT-TTCAATACATGTATATAATCGTGTTTGGATAGGTGTTTGCATCAA---TAATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAT-TC----TACTGCAGACATGCAAACTCAATCCCCATATGTCCAGTCATTCTGACTTCAGAATAATCcttagaatttaagtttattctacatttatttct
gi|5 : ctagttcatgagctagaaA----------TATCT--ATTTCG-CATGAACTTGCCTTCACT-TAT-TTAACTCTTAAATATACAATATTTATATCAAGTAATTTGTCATCTTCTTTCTTTATTCGTTTCTTT--GACAAAAA-----CTGTGACTCAACAGTTTATGACAT-AGTCGATGGAAACTG---T--CAAACAAGTTTCTA-TCA-CATT-----TGATTGCTATC---TG--CGGCTACT------GCGTTTCCA-T---------TATT---TACTGTCTGGGGA--------------------------GAA-C----ATGGGTGTTTAGTT-----GGGTCGT-GTTGATCAATACATATTTTTAATCGTATTCG--TA--TCTTT-CATT
gi|5 : tagttcgtcagctagatataattggTGCTTGAATTATTCTTTGCATT------CACCATTGGTACTCATACCTTAC-AAATATTC---TTCAAG-TG----TACTGAAAAC------------TCCCCATATTTTCAATGATTCTGgtcctgataatctgaacttactgtacattccatttcttctttatgcttgaattattctttgcattcaccattggtactcataccttacaaatattcttcaagtgtactgaaaactccccatattttcaatgattctgtattc
gi|6 : tagttcgtcagctagatataattggatatctatttcgcatgaacttgccttcacttatttaactcttaaatatacaatatttatatcaagtaatttgtcatcttctttctttattcgtttctttgacaaaaactgtgactcaacagtttatgacatagtcgatggaaactgtcaaacaagtttctatcacatttgattgctatctgcggctactgcgtttccattatttactgtctggggagaacatgggtgtttagttgggtcgtgttgatcaatacatatttttaatcgtattcgtatctttcattgtcctgataatctgaacttactgtacattccatttcttctttaGATTTGTAA----------TATCT--ATATCATCGT-AACTTGTCTGCAAT-CTT-ATAACTCTTTAGTATATCAGAGTTTTATAAAATAATTTACCATCTCCTAACTGTATTTGTCTCTTT--GACACAGC-----CTATATC-CAACAGTTCACGAAAT-ATTT---------TGATGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTAACTACCA--TGGGAAACTACTTTATCAGCATTTACG-TTTGTTAAGCTATT---TAACCACTGACAATAT-TA---ACAT---AAAAGT---ACAA-TGTATATGGGTGTTTAGTT-----TAGTTGC-ATTTTTCAATACATGTATAAAATCGTTCTTAGAAAGGTCTTTGTATCAG---TCATCATAGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTTCATCCCCATATGTCCAGTCATTCTGACTTCAGAACAATCtattc
gi|7 : ctagttcatgagctagaaGGTTTGTAA----------TATCT--GTATCA-CGTGAACTTGTCTACAAT------TGACTCTTGAGTATATCAGAGTTTAAGCAAATACTTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----GTTTGTCTCAACAGTTTACGACATCTTTAGATGGAAACTGCTGT--CCGGCAAATTTCTT-TCG-TATT-----TGCTTGCTACCA--TGGGCATCTACTTTATCAGCATTTATT-TCTGTGGAACTATT---TTACCACTGACAATAT-TA---ACAT---AA---T---TGAT-T----ATGGGTGTTTAGTT-----TAGTCGC-GTTGTTCAATACATGTATATAATTGTGCTTGAGTATGTCTTTGCATCAA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACT---ATCATGCAAACTGAATCCCCATTTTTCCATTCATTCTGACTTCAGAATAAT
gi|8 : ctagttgatgagctaaaaGGTTTGTAA----------TAACT--ATATAA-CGTGAACTTGTCTGCAAT-CCT--TA--TCTTGAGTATATCAGAGTCCTATCAAATAATTTAGCATCTCCTGCCTTTATTTATCTCTTT--GACACAGC-----CTATGTCTCAACAGTTTCTGAAATCATTTGATGGAAACTGCTGT--CAGGTGAATTTCTT-TCA-TATT-----TGCTTACTACCA--TGGGCAACTGCTTTATCAGCATTTACT-TCTGTGGAGCTATTTAATAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTCGC-ATTGCTCAATACATGTTT-TAATTGTGATTTGATAGGTCTTTGCATAAA---TCATCATTGGGAATCATACTTGACAAAATA-TC---TTTAAC-TCTTAGTACTGCAAACATGCAAACTCAGTCTCCATATTTCCAATCATTCTGACTTCAGAATAACCCCa
gi|9 : GGTTTGTAAATACAGGAGCCATCT--ATATCA-CAGGCAC--GT--GCAAT-CCT-ATAACTCTTGTGTATACCAGAAGCGTATAAAATAATTTAACATCTTCTGCCTTTATTCGTCTCTTT--GAGATAGCATAAAGTATGTCTCAACAGTTTACGAAATCATTTGCTAGAA----CTAC--CAGGCCAATTTCTT-TCA-CATT-----TGCTTACTACCA--TGGG---CTAT----TCAGCATTTACTGTCTATGAAGCTGTT---TTACCGCTGACTATAT-AT---ACAT---AA---T---ATAA------A---------AGAT-----TAGTCGC-GTTGTTCAATACATGTTTATTATCGTGCTTGGATAGGTATTTGCATCAA---TCATCATTG-------TACTTGACAAAAAA---------AATATC----TACTACAAACATGCAAATTCAGCCCTTATATTTCTAGTAAATTTGGCTTCAGAATAATCCa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): GCATACTGTATCCCAATAGTTTCAGTGATTCTTCCTTCGGAATTATTCCAATTATACTATGCACATGTGTCATTAACATGGTTTCAACGAAGATATCACTCCACAA
Alignments
lowQualScore : 111111 1
lowQualScore : 6666666666 22 1 1 1 333333 22 44444 222 3 1 1 33333 1 22 1 2 0 0 222 1 3 2 1 333 333 333 333 1 7777 44444 1 0 1 222 1 222 1 3333
lowQualScore : .......... .. . . . ...... .. ..... ... . . . ..... . .. . . . . ... . . . . ... ... ... ... . .... ..... . . . ... . ... . ....
lowQualScore : 7777777777 11 0 5 5 777777 22 00000 777 1 5 5 88888 6 22 6 9 3 0 999 7 0 1 7 000 000 000 000 7 4444 22222 6 8 0 777 5 777 5 3333
consensus : GGTTTGTAA----------TATCT--ATATNA-CGTGAACTTGTCTGCAAT-CCT-ATAACTCTTGAGTATATCAGAGTCGTATCAAATAATTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----CTATGTCTCAACAGTTTACGAAATCATTTGATGGAAACTGCTGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTACTTTATCAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTCGC-GTTGTTCAATACATGTTTATAATCGTGNTTGGATAGGTCTTTGCATTAA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCAGAATAATCCC
Reference ( family-916 ) : GGTTTGTAA----------TATCT--ATATNA-CGTGAACTTGTCTGCAAT-CCT-ATAACTCTTGAGTATATCAGAGTCGTATCAAATAATTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----CTATGTCTCAACAGTTTACGAAATCATTTGATGGAAACTGCTGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTACTTTATCAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTCGC-GTTGTTCAATACATGTTTATAATCGTGNTTGGATAGGTCTTTGCATTAA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCAGAATAATCCC
gi|1 : GGTTTTTAA----------TATTTTGGTATCC-CGTGATCTTGTCTGCAAT-CCT-ATACTTCTTGAGTATAACAGTATCGTATAAAAAAACT--ACATCTTCTGCCTTTATTTGTCTCTTT--GACATAGC-----CT-TGTATGAACTGTTTTCAAAATATTTTGATGGAAACTGC-----CAGGTAAATTTATT-TC--TGTTCACCGTGATTACTACCA--AA-GGCTACTACTGTTTAAGCATTTACTGTCTGCGAAACTATT---TTAC-------GATAC-TT---TCAT---AG---A---ATAA-T----CTTGTTGTTAAGTT-----TTGTCGC-ATTGATCGATACATGTTTCAAATC-TGTT
gi|1 : ctaattgataaactagaaTGCTTCGATAGGTCTTTGCATGAA---TCATCATTGGTACTAATACTTGACAA---A-TCTGTTTCAAG-TC----TACTGCAAGCGTACAAACTCAATTGCCATATTTTCAGTCATTCTGGTTTCAAAATGATCCcttatctttcattgtccttataagctgaacttattttacatatcatttcttccttatgcttcgataggtctttgcatgaatcatcattggtactaatacttgacaaatctgtttcaagtctactgcaagcgtacaaactcaattgccatattttcagtcattctggtttcaaaatgatcc
gi|10 : ctaattgataaactagaaggtttttaatattttggtatcccgtgatcttgtctgcaatcctatacttcttgagtataacagtatcgtataaaaaaactacatcttctgcctttatttgtctctttgacatagccttgtatgaactgttttcaaaatattttgatggaaactgccaggtaaatttatttctgttcaccgtgattactaccaaaggctactactgtttaagcatttactgtctgcgaaactattttacgatactttcatagaataatcttgttgttaagttttgtcgcattgatcgatacatgtttcaaatctgttcttatctttcattgtccttataagctgaacttattttacatatcatttcttccttaGGTTTGTAA----------TACCT--ATATAA-CGTGAACTTGTCTGCAAT-CCT--TA--TCTTGAGTATATCAGAGTCCTATCAAATAATTTAGCATCTCCTGCTTTTATTTGTCTCTTT--GACACAGC-----CTATGCCTCAACAGTTTAGGAAATCATTTGATGGAAACTGCTGT--CAGGCGAACTGCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTGCTTTATCAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTAAGTT-----TAGTCGC-ATTGTTCAATACATGTTTATAATCGTGATTGGATAAGTCTTAGCATTAA---TCATCATTGGGACTCATACTTAACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAATCTCAGTCTCCATAATTCCAATTATTCTGACTTCAGAATAATCCC
gi|11 : GGTTTGAAA----------TACCT--ATATAA-CGTGAACTTGTCTGCAAT-CCT--TA--CCTTGAGTATATCAGAGTCCTATCAAATAATTTAGCAACTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----CTATGTCTCAATAGTTTACGAAATCATTTGATGGAAACTGCTAT--CAGGCGAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTGCTTTATCAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----AAGTCGC-GTTGTTCAATACATGTTTATAATCGTGATTGGATAGGTCTTTGCATTAA---TCATCATTGGGACTCACACTTGACAAAATA-TA---TTCAAC-TC----TACTGCAAACATGCAAACTCAGTCTCCATATTTCCAATCAATCTGACTTCAGAATAATCCCa
gi|12 : GGTTTGTAA----------TATCT--CTCTCA-CGTGAACTTGTCTGCAAT-CCT-ATAACTCTTGAGTGTACCAGAATCGTATCAAA-------------CCTGCCT--AGTTGTCTTTTT--GAGACAGC-----CTATTTCTCAACAGTTTACGAAATCTTTCGATGGAAACTG---T--CGGGCATATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCTACTACTTTATCAGCATTTACTGTCTGTGGATCTATT---TTACCACTGACAATATATACATACATTTGAA---T---AGAA-T----ATGAGCATTTAGTT-----TAGTCGC-GTTGTTCAATACATGTTTACAATCGTGCTTGGATATGGCTTTGCATCAG---TACTCATTAGTA----------ACAAAATA-TC-----AAAC-TC----TACTGCAAACAAACAAACTCAATCCCCATATTTTCAGTCATTCTGGCTTCAGAATAATCCC
gi|13 : ctagttgatgagctacaaGGTTTGTAA----------TATCT--ATATAA-CGTGAACTTGTCGGCAAT-CAT--TA--TCTTGAGTATATCAGAGTACTAT--AA-AATTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----CTATGTCTCTACAGTTTA-----TCATTTGATGGAAATTGGTGT--CAGGCGAATTTCTT-TCA-TATT-----TGGTTACTTCCA--TG-GGCAATTGCTTTATCAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAG-TA---ACAT---AA---T---TGAA-T----ATGGGTGTTTAGTT-----AAGTCGC-GTTGTTCAATACATGTTTATAATCTTGATTGGATAGGGTTTTGCATTAA---TCATCATTGGGACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAGTCTCCATATTTCCAATCATTCTGACTTCAGAATAATCCC
gi|14 : GGTTTGTAA----------TATCT--ATATAA-CGTGAACCTGTCTTCAAT-CCT-ATGACTCTTGA--ATATCAGAGTTGTATCAAATAACTTAGCATCTCCTGCCTTTATTTGTCATTTT--GACTCAGC-----CCATGTCTCAACAGTTTACGAAAACATTTTATGGGAAATGCCGT--C-----------TT-TCA-TATT-----TGCATACTACCA--TG-GGCAACTGCTTTATCATCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGGTAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTATAGTT-----TAGTCGC-GTTGTTCAATACATGTTTATAATCGTGATTGGATAGGTATTTGCACTAA---TCATCATTGGCGCTCATACTTGTCAAAATA-TT---TTCAAT-TC----TATTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCCGAATAATCCCa
gi|15 : GGTTTGTAA----------TACCT--ATATAA-CGTGAACTTGTCTGCAAT-CCT--TA--TCTTGAATATATCAGAGTCCTATCAAATAATGTAGCATCTTCTTCCTTTATGTGTCTCTTT--GACACAGC-----CTTTGTCTCAACAGTTTACGAAATCATTTGATGGAAATTGCTGT--CAGGCGAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTGTTTTATCAGCATTTACT-TCTGTTGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----AAGGGTGTAAA-------------------GTTCAATACATATTTATAATCGTGATTTGATAGGTCTTTGCATTAA---TCATCATTGGGACTCATACTTGACAAAATA-TC---TTCATC-TT----TACTGCAAACATGCAAACTCAGTCTTCGTATTTCCAATCATTCTGACATAAGAATTATCCC
gi|16 : GGTTTGTAA----------TATCT--ATATCA-TGTGAACTTGTCTGAAAT-CCT-ATAAATCTTGGGTATATCAAAGTCGTATCAACTA----AGCATC-------------TGTCTCTTT--GACACAGC-----CTATGTCTCAACAGTTTACGAAATATTTTGGTAGAAACTACAGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-AGCAACTACTTTTTCAGCATTTACT-TCTGTGGAGCTATT---------------GCAC-TA---A------AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTAGC-GTTGTCCAAGACATGTTTATAATCGTGTTTGGATAGGTATTTGCATCAA---TCATCATTGGACCTCATATTTAACAATATA-TT---TTCAAC-TC----TACTGCAAGCATGCAAACTCAATCCCAATATTTTCAGTGATTCTGACTTCAGAATAATC
gi|17 : agttgatgagcaagacGATTTGTAA----------TATCT--ATCTCA-CTTGAACTTGTCTTCAGT-CAT-ATAACTCTTGAGTATACCAAAATGGTATCAAATAATTCAACATCTCCTG----------------------ACAGC-----CTATGTCTCAACAGTTTACGAAATCATTTAATGGAAACTG---T--CAGGCAAATTT--T-TCC-TACT-----TGCTTACTACCA--TA-GGCTACTACTTTATCAGCATTTACT----GTGGAGCTATT---TTACCACTGACGATAT-TT---ACAT---TA---T---AGAA-T----ATGGGTGCTTAGTT-----TAGTCGC-GTTGT---------GTT-AT--TCGTGCTTGAATAGGTCTTTGCATCAA---TAATTATTGGTACTCACACATAACAAAATA-TC---TTCAAT-TC----TACTGCAAACATGCAAACTCAATCCCCAAATTTCCAGTCATTCTGGCTTCAGAATA
gi|18 : tagttgatgagctagaaGGTTTGTAA----------TATCT--ATATAA-CATACACTTGTCTGCAATATCT-AT----CTTGAGTACATTAGAGTCGTATCAAATAATTTAGCATCTCCGGCCTTTATGTGTCTCTTC--GACACAGC-----ATATGGTTAAACAGTTTACGAAATCATTTGATGGAAACTGCTGT----GGCAA---------------C-----TGCTT--TATCA------GCA---------------TTTACT-TCTGTGGAACAATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATTGGTGTTTAGTT-----TAGTCGC-CTTGTTCAATACATGTTTATAATCGGGATTTGATACAACTTTGCATTTA---TCATCGTTGGTACTCATACTTGACAATATG-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCTGAATAATCC
gi|19 : GGTTTGTAA----------TATCT--ATATAA-CATGAACTTGTCTGCAAT-CCT--TA--TCTTGAGTGTATCGGAGTCCTATCAAATAATTTAGTATCTCCTGCCTTTATGTGTCTCTTT--GACACAGC-----ATATGGTTAAACAGTTTACGAAATCATTGGATGGAAACTGCTGT----GGCAA---------------C-----TGCTT--TATCA------GCA---------------TTTACT-TCTGTGGAGCTATT---GAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----AAGTCGC-GTTGTTCAATACATGTTTATAATCGTGATTGGATAGGTCTTTGCATTAA---TCATCATCGGTACTCATACTTGACAAAATA-TC---TTCACC-TC----TGTTGCCAACATGCAAACTCAATCCCTATATTTCCAGTCATTCTGATTTCAGAATAAT
gi|2 : GGTTTTTAA----------TATCC--ATATCA-CGTGAACGTGTCTACATT-ACT-ATAACTCTTGAGTGTATCAGAATCGTAT---ATAAT--AACATCTCCTGCCTTTATGCATCTCTTT--GACA----------------------GTTTTCGAAATCTTTTGAGGGAAACTG---T--CAGGCAAGTTTCTT-TTA-TATT-----TGCATATTACCA--TG-GGCTACTACTTTATGAGGATTTACTGTCTGGGGAGATATT---TTACCGCTGACAACAT-TT---ACAT---AA---T---AGAATT----TTGGGTATTTTGTT-----TGGTCGC-ATTGATAAAGATATAATC-TAATTGTGTT
gi|2 : tattaataagctggaaTGTTTGGATAGATCTTTGCAACAA---TTATCAGTGGTACTCATACTTGACAAA-TA-T-----TCAAA-TC----TACTGTAAGCATGCAAACTCAATCGCCATATTTTCCGTCATTCTAACTTGAGAATAATCCCcttatctctcaatgtcctaagaatctaaacttacatttctacatttcatattttctttatgtttggatagatctttgcaacaattatcagtggtactcatacttgacaaatattcaaatctactgtaagcatgcaaactcaatcgccatattttccgtcattctaacttgagaataatccc
gi|20 : tattaataagctggaaggtttttaatatccatatcacgtgaacgtgtctacattactataactcttgagtgtatcagaatcgtatataataacatctcctgcctttatgcatctctttgacagttttcgaaatcttttgagggaaactgtcaggcaagtttcttttatatttgcatattaccatgggctactactttatgaggatttactgtctggggagatattttaccgctgacaacatttacataatagaattttgggtattttgtttggtcgcattgataaagatataatctaattgtgttcttatctctcaatgtcctaagaatctaaacttacatttctacatttcatattttctttaGGTTTGTAA----------TATCT--ATATAA-CATGAACTTGTCTGCAAT-CCT--TA--TCTTGAGTATATCAGAGTCGTATTAAA-AATTTAGCATCTCCTGCCTTAACGTGTCTCTTT--GACACAGC-----ATATGGTTAAACAGTATACGAAATCATTTGATGGAAACTGCTGC----GGCAA---------------C-----TGCTT--TATCA------GCA---------------TTTACT-TCTGTGGAGCTATT---TAACATCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTCGC-GTTGTTCAATATATGTTTATAATTGTGATTGGATAGGTCTTTGCATTAA---TCATCATTGGTACGCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCAGAATAAT
gi|21 : GGTTTGTAA----------TATCT--ATATAA-CGTGAACTTGTCTGCAAT-CCTTATA----TTGAATATATCAGAGTCGTATCAAATAATT-AGCATCTCCTGCCTTTATGTGTCTCTTT--GACACAGC-----ATATAGTAAAACAGTTTACGAAACCATTTGATGGAAACTTCTGT----GGCAA---------------C-----TGCTT-----TA--TA-AGCA-----TTT----------ACT-TCTGTGGAGCTATT---GAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----AT-AGTGTTTAGTT-----TAGTCGC-GTTGTTCAATACATGTTTATTATTGTGATTAGATAGGTCTTTGCATTAA---TCATCATTACTACTCATACTTGACAAAATA-TC---TTCAGC-TG----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCAGAATA
gi|22 : GGTTTGTAA----------TATCT--ATATAA-CGTGAACTTTTCTGCAAT-CCT--TA--TCTTGAGTATTTCAGAGTCGTATCAAATAATTTAGCATCTCCTGCCTTTATGTGTCTCTTT--GACACAGC-----CTATGGTTAAACAGTTTACGAAATCATTTGATGGAAACTGCTGT----GGTAACTGTTTTATCAGTATT-----TACTT----CTG--TG-G--AGCTA-TTTA---------ACC-TC----------------------TGAAGATAT-TA---ACAT---AA---T---AGAA-T----TTGATTGTTTAGTT-----TAGTCGC-TTTGTTCAATACATGTTTAT-ATCGTGATTGAATAGGTCTTTGCATTGA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATGCCCATATTTCCAATct
gi|23 : TTTGTTA----------TATCT--ATATCA-CGTGAACTT------------------TTCTCGAGTATATTAGAGTCGTATCAAATAATTCAGCATCTCCTGCCTTTATTTGTCTATTTAAGACACATC-----CTATGTCTCAACAGTTTACGTAATATTTTGATGTAAACTGCTGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACAA--TG-GGtc
gi|23 : tagttgatgagctagaagtGTCTTTATCTCAG---TCATCATTGGTACTCATGCTTGGCAAAATA-TC---TTCAAC-TC----TACTGTAAACATACAAACTCAATCCCCATATATCCAGCAATTCTGACTTCAGAATttacataatagaacatatgtgtctttatctcagtcatcattggtactcatgcttggcaaaatatcttcaactctactgtaaacatacaaactcaatccccatatatccagcaattctgacttcagaat
gi|24 : tagttgatgagctagaagttttgttatatctatatcacgtgaacttttctcgagtatattagagtcgtatcaaataattcagcatctcctgcctttatttgtctatttaagacacatcctatgtctcaacagtttacgtaatattttgatgtaaactgctgtcaggcaaatttctttcatatttgcttactacaatgggttacataatagaacatatgtCTCAACAGTTTACGAAATCATTTAATGGAAACTGCTGT--CGGGCAAATTTCTT-TCA-TATT-----TGCTAACTACCA--CG-GGCAACTGCTTTATCATCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTTTAGTCTAGTCGC-GTTGTTCAATACATGTTT-CAATTGTGATTGGATAGGTCTTTGCATTAA---TCATCATTGGTACCCATACTTGACAAAATA-TC---TTCAAC-TC----TGCTGC--ACATGCAAACTCAATCTCCTTATTTCCAGTCATTCTGACTTCAGAATAATCC
gi|25 : GGTTTGTAA----------TATCT--ATCTAA-CGTGAACTTGTCTGTTAT-CCT-ATAACTCTTGAGTATACCTGAATAGTATCAAATAATTTAGCATCTCCTGCCTTTAGTTGTCTCTTT--GAGACAGC-----CTATGTCTCAACAGTATACGGAATCATTTGATGGAAA---CAGT--AAGATAATTTTCTT-TCA-TATT-----TGCTTACTTCTA--TG-GGCTACTAATTTATCAGCATTTACTGTCTGTCGATTTATT---
gi|26 : tagttgatgagctagacGGTTTGTAA----------TATCT--ATAAAA-CGTGAACTTATCTGCAA--------AACT------TA------AGTTGTATCAAATAA-TTAGGATCTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----CTATGTCTCAACAGTTTACGAAATCATTTGATGGAAACTGCTGT--CAGGTAAATTTCTT-TCA-TATT-----TGCTTACAACC
gi|27 : TCGC-GTTGTTCAATACATGTTTACAATCGTGCTTGGATAGGTC----------------------------ATGCATGACAAAATA-TC---TTCATT-TC----TACTTCAAAAA-GCAAACTCAGTCCCAATAGTTTCTGTCATTCTGACTTAAGAATATTCC
gi|28 : GGTCTTTACATTAA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCATTCCTCATATTTCCAGTCATTCTGACTTCAGAATAa
gi|3 : accGGTTT-TAA----------TATTT--ATATTA-CGTGAACTTGTCTGCAAT-CCT-ATAACTCTTCAGTATATCAGAATTGTATCAAATAATTTTCCATCTCCTGCCTTTACTTGTCTCTTT--GCTATAGT-----CCATGTCTCAATAGTTTTCGAAATCGTTTGATGGAAA---CTGT--CAGGTAAGTTTCTT-TCA-TATT-----TGCTTACTATCATTTA-GG---CTAATTAATCAGCATTTAC--------GGTCTATT---TTACCACTGACGATAT-TT---ACAT---AG---T---ATAA-T----CTTGGTGTTTAGTT-----TGGTCGC-GTTGGTTAATACATGTTTCTAATTGTGtt
gi|3 : ctagttgatgaactagaaTGCTTGGATATGTCTTTG---TAAGGCTCATCACTGGTATCCATACTTGACAAATCC-TC---TTCAAC-TC----TACTGCAAACATAAAAACCCAATCCCCATATTTGCAGTCAATCTGtgtttatctctcattgtctttagaatctaaacttattctacatttcatttttaccttatgcttggatatgtctttgtaaggctcatcactggtatccatacttgacaaatcctcttcaactctactgcaaacataaaaacccaatccccatatttgcagtcaatctg
gi|30 : ctagttgatgaactagaaggttttaatatttatattacgtgaacttgtctgcaatcctataactcttcagtatatcagaattgtatcaaataattttccatctcctgcctttacttgtctctttgctatagtccatgtctcaatagttttcgaaatcgtttgatggaaactgtcaggtaagtttctttcatatttgcttactatcatttaggctaattaatcagcatttacggtctattttaccactgacgatatttacatagtataatcttggtgtttagtttggtcgcgttggttaatacatgtttctaattgtgtgtttatctctcattgtctttagaatctaaacttattctacatttcatttttaccttaGGTTTGTAA----------TATCT--ATATCA-TGTGAACTTGTCTTCAGT-CCT-ATAAATCTTGAGTATATC--AGTTGTAT
gi|31 : tagttgatgagctagaaTGGGTGTGTAGCT-----GGGACGC-GTTGATCAAAACATATTTCTAATCGTGTT
gi|4 : GGTTTGTCA----------TATCT--ACATCA-TGTGAACTTGTCTGCAAT-CCT-TTAACTCTTTAGTATATCAGAGTCATATAAAATAATTTACCATCTCCTGCCTTTATTTGTCCCTTT--GACACAGC-----CTATGCC-CAACAGTTTACGAAATCTTTTGATGGAAACTGCTGTGTCAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACAA--TG-GGAAACTACTTTATCAGCATTTACT-TTTGTGGAGCTATT---TGACCACTGACGGCAT-TT---ACAT---AA---TTGTACAA-TGTAAATGGGTGTTTAGTT-----TAGTCGCAGTT-TTCAATACATGTATATAATCGTGTTTGGATAGGTGTTTGCATCAA---TAATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAT-TC----TACTGCAGACATGCAAACTCAATCCCCATATGTCCAGTCATTCTGACTTCAGAATAATCcttagaatttaagtttattctacatttatttct
gi|5 : ctagttcatgagctagaaA----------TATCT--ATTTCG-CATGAACTTGCCTTCACT-TAT-TTAACTCTTAAATATACAATATTTATATCAAGTAATTTGTCATCTTCTTTCTTTATTCGTTTCTTT--GACAAAAA-----CTGTGACTCAACAGTTTATGACAT-AGTCGATGGAAA---CTGT--CAAACAAGTTTCTA-TCA-CATT-----TGATTGCTATC---TGCGGCTACTGCGTTTCCATTATTTACTGTCTGGGGAG---------AACAT----GGGTGT-T-------T---AG---T--------------TGGGT-----------------CGT-GTTGATCAATACATATTTTTAATCGTATTCG--TA--TCTTT-CATT
gi|5 : tagttcgtcagctagatataattggTGCTTGAATTATTCTTTGCATT------CACCATTGGTACTCATACCTTAC-AAATATTC---TTCAAG-TG----TACTGAAAAC------------TCCCCATATTTTCAATGATTCTGgtcctgataatctgaacttactgtacattccatttcttctttatgcttgaattattctttgcattcaccattggtactcataccttacaaatattcttcaagtgtactgaaaactccccatattttcaatgattctgtattc
gi|6 : tagttcgtcagctagatataattggatatctatttcgcatgaacttgccttcacttatttaactcttaaatatacaatatttatatcaagtaatttgtcatcttctttctttattcgtttctttgacaaaaactgtgactcaacagtttatgacatagtcgatggaaactgtcaaacaagtttctatcacatttgattgctatctgcggctactgcgtttccattatttactgtctggggagaacatgggtgtttagttgggtcgtgttgatcaatacatatttttaatcgtattcgtatctttcattgtcctgataatctgaacttactgtacattccatttcttctttaGATTTGTAA----------TATCT--ATATCATCGT-AACTTGTCTGCAAT-CTT-ATAACTCTTTAGTATATCAGAGTTTTATAAAATAATTTACCATCTCCTAACTGTATTTGTCTCTTT--GACACAGC-----CTATATC-CAACAGTTCACGAAAT-ATTT---------TGATGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTAACTACCA--TG-GGAAACTACTTTATCAGCATTTACG-TTTGTTAAGCTATT---TAACCACTGACAATAT-TA---ACAT---AAAAGT---ACAA-TGTATATGGGTGTTTAGTT-----TAGTTGC-ATTTTTCAATACATGTATAAAATCGTTCTTAGAAAGGTCTTTGTATCAG---TCATCATAGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTTCATCCCCATATGTCCAGTCATTCTGACTTCAGAACAATCtattc
gi|7 : ctagttcatgagctagaaGGTTTGTAA----------TATCT--GTATCA-CGTGAACTTGTCTACAAT------TGACTCTTGAGTATATCAGAGTTTAAGCAAATACTTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----GTTTGTCTCAACAGTTTACGACATCTTTAGATGGAAACTGCTGT--CCGGCAAATTTCTT-TCG-TATT-----TGCTTGCTACCA--TG-GGCATCTACTTTATCAGCATTTATT-TCTGTGGAACTATT---TTACCACTGACAATAT-TA---ACAT---AA---T---TGAT-T----ATGGGTGTTTAGTT-----TAGTCGC-GTTGTTCAATACATGTATATAATTGTGCTTGAGTATGTCTTTGCATCAA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACT---ATCATGCAAACTGAATCCCCATTTTTCCATTCATTCTGACTTCAGAATAAT
gi|8 : ctagttgatgagctaaaaGGTTTGTAA----------TAACT--ATATAA-CGTGAACTTGTCTGCAAT-CCT--TA--TCTTGAGTATATCAGAGTCCTATCAAATAATTTAGCATCTCCTGCCTTTATTTATCTCTTT--GACACAGC-----CTATGTCTCAACAGTTTCTGAAATCATTTGATGGAAACTGCTGT--CAGGTGAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTGCTTTATCAGCATTTACT-TCTGTGGAGCTATTTAATAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTCGC-ATTGCTCAATACATGTTT-TAATTGTGATTTGATAGGTCTTTGCATAAA---TCATCATTGGGAATCATACTTGACAAAATA-TC---TTTAAC-TCTTAGTACTGCAAACATGCAAACTCAGTCTCCATATTTCCAATCATTCTGACTTCAGAATAACCCCa
gi|9 : GGTTTGTAAATACAGGAGCCATCT--ATATCA-CAGGCAC--GT--GCAAT-CCT-ATAACTCTTGTGTATACCAGAAGCGTATAAAATAATTTAACATCTTCTGCCTTTATTCGTCTCTTT--GAGATAGCATAAAGTATGTCTCAACAGTTTACGAAATCATTTGCTAGAA----CTAC--CAGGCCAATTTCTT-TCA-CATT-----TGCTTACTACCA--TG-GG---CTAT----TCAGCATTTACTGTCTATGAAGCTGTT---TTACCGCTGACTATAT-AT---ACAT---AA---T---ATAA------A---------AGAT-----TAGTCGC-GTTGTTCAATACATGTTTATTATCGTGCTTGGATAGGTATTTGCATCAA---TCATCATTG-------TACTTGACAAAAAA---------AATATC----TACTACAAACATGCAAATTCAGCCCTTATATTTCTAGTAAATTTGGCTTCAGAATAATCCa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): GCATACTGTATCCCAATAGTTTCAGTGATTCTTCCTTCGGAATTATTCCAATTATACTATGCACATGTGTCATTAACATGGTTTCAACGAAGATATCACTCCACAA
Alignments
lowQualScore : 111111 1
lowQualScore : 6666666666 22 1 1 1 333333 22 44444 222 3 1 1 33333 1 22 1 2 0 0 222 1 3 2 1 333 333 333 333 1 7777 44444 1 0 1 222 1 222 1 3333
lowQualScore : .......... .. . . . ...... .. ..... ... . . . ..... . .. . . . . ... . . . . ... ... ... ... . .... ..... . . . ... . ... . ....
lowQualScore : 7777777777 11 0 5 5 777777 22 00000 777 1 5 5 88888 6 22 6 9 3 0 999 7 0 1 7 000 000 000 000 7 4444 22222 6 8 0 777 5 777 5 3333
consensus : GGTTTGTAA----------TATCT--ATATNA-CGTGAACTTGTCTGCAAT-CCT-ATAACTCTTGAGTATATCAGAGTCGTATCAAATAATTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----CTATGTCTCAACAGTTTACGAAATCATTTGATGGAAACTGCTGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTACTTTATCAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTCGC-GTTGTTCAATACATGTTTATAATCGTGNTTGGATAGGTCTTTGCATTAA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCAGAATAATCCC
Reference ( family-916 ) : GGTTTGTAA----------TATCT--ATATNA-CGTGAACTTGTCTGCAAT-CCT-ATAACTCTTGAGTATATCAGAGTCGTATCAAATAATTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----CTATGTCTCAACAGTTTACGAAATCATTTGATGGAAACTGCTGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTACTTTATCAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTCGC-GTTGTTCAATACATGTTTATAATCGTGNTTGGATAGGTCTTTGCATTAA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCAGAATAATCCC
gi|1 : GGTTTTTAA----------TATTTTGGTATCC-CGTGATCTTGTCTGCAAT-CCT-ATACTTCTTGAGTATAACAGTATCGTATAAAAAAACT--ACATCTTCTGCCTTTATTTGTCTCTTT--GACATAGC-----CT-TGTATGAACTGTTTTCAAAATATTTTGATGGAAACTGC-----CAGGTAAATTTATT-TC--TGTTCACCGTGATTACTACCA--AA-GGCTACTACTGTTTAAGCATTTACTGTCTGCGAAACTATT---TTAC-------GATAC-TT---TCAT---AG---A---ATAA-T----CTTGTTGTTAAGTT-----TTGTCGC-ATTGATCGATACATGTTTCAAATC-TGTT
gi|1 : ctaattgataaactagaaTGCTTCGATAGGTCTTTGCATGAA---TCATCATTGGTACTAATACTTGACAA---A-TCTGTTTCAAG-TC----TACTGCAAGCGTACAAACTCAATTGCCATATTTTCAGTCATTCTGGTTTCAAAATGATCCcttatctttcattgtccttataagctgaacttattttacatatcatttcttccttatgcttcgataggtctttgcatgaatcatcattggtactaatacttgacaaatctgtttcaagtctactgcaagcgtacaaactcaattgccatattttcagtcattctggtttcaaaatgatcc
gi|10 : ctaattgataaactagaaggtttttaatattttggtatcccgtgatcttgtctgcaatcctatacttcttgagtataacagtatcgtataaaaaaactacatcttctgcctttatttgtctctttgacatagccttgtatgaactgttttcaaaatattttgatggaaactgccaggtaaatttatttctgttcaccgtgattactaccaaaggctactactgtttaagcatttactgtctgcgaaactattttacgatactttcatagaataatcttgttgttaagttttgtcgcattgatcgatacatgtttcaaatctgttcttatctttcattgtccttataagctgaacttattttacatatcatttcttccttaGGTTTGTAA----------TACCT--ATATAA-CGTGAACTTGTCTGCAAT-CCT--TA--TCTTGAGTATATCAGAGTCCTATCAAATAATTTAGCATCTCCTGCTTTTATTTGTCTCTTT--GACACAGC-----CTATGCCTCAACAGTTTAGGAAATCATTTGATGGAAACTGCTGT--CAGGCGAACTGCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTGCTTTATCAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTAAGTT-----TAGTCGC-ATTGTTCAATACATGTTTATAATCGTGATTGGATAAGTCTTAGCATTAA---TCATCATTGGGACTCATACTTAACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAATCTCAGTCTCCATAATTCCAATTATTCTGACTTCAGAATAATCCC
gi|11 : GGTTTGAAA----------TACCT--ATATAA-CGTGAACTTGTCTGCAAT-CCT--TA--CCTTGAGTATATCAGAGTCCTATCAAATAATTTAGCAACTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----CTATGTCTCAATAGTTTACGAAATCATTTGATGGAAACTGCTAT--CAGGCGAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTGCTTTATCAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----AAGTCGC-GTTGTTCAATACATGTTTATAATCGTGATTGGATAGGTCTTTGCATTAA---TCATCATTGGGACTCACACTTGACAAAATA-TA---TTCAAC-TC----TACTGCAAACATGCAAACTCAGTCTCCATATTTCCAATCAATCTGACTTCAGAATAATCCCa
gi|12 : GGTTTGTAA----------TATCT--CTCTCA-CGTGAACTTGTCTGCAAT-CCT-ATAACTCTTGAGTGTACCAGAATCGTATCAAA-------------CCTGCCT--AGTTGTCTTTTT--GAGACAGC-----CTATTTCTCAACAGTTTACGAAATCTTTCGATGGAAACTG---T--CGGGCATATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCTACTACTTTATCAGCATTTACTGTCTGTGGATCTATT---TTACCACTGACAATATATACATACATTTGAA---T---AGAA-T----ATGAGCATTTAGTT-----TAGTCGC-GTTGTTCAATACATGTTTACAATCGTGCTTGGATATGGCTTTGCATCAG---TACTCATTAGTA----------ACAAAATA-TC-----AAAC-TC----TACTGCAAACAAACAAACTCAATCCCCATATTTTCAGTCATTCTGGCTTCAGAATAATCCC
gi|13 : ctagttgatgagctacaaGGTTTGTAA----------TATCT--ATATAA-CGTGAACTTGTCGGCAAT-CAT--TA--TCTTGAGTATATCAGAGTACTAT--AA-AATTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----CTATGTCTCTACAGTTTA-----TCATTTGATGGAAATTGGTGT--CAGGCGAATTTCTT-TCA-TATT-----TGGTTACTTCCA--TG-GGCAATTGCTTTATCAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAG-TA---ACAT---AA---T---TGAA-T----ATGGGTGTTTAGTT-----AAGTCGC-GTTGTTCAATACATGTTTATAATCTTGATTGGATAGGGTTTTGCATTAA---TCATCATTGGGACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAGTCTCCATATTTCCAATCATTCTGACTTCAGAATAATCCC
gi|14 : GGTTTGTAA----------TATCT--ATATAA-CGTGAACCTGTCTTCAAT-CCT-ATGACTCTTGA--ATATCAGAGTTGTATCAAATAACTTAGCATCTCCTGCCTTTATTTGTCATTTT--GACTCAGC-----CCATGTCTCAACAGTTTACGAAAACATTTTATGGGAAATGCCGT--C-----------TT-TCA-TATT-----TGCATACTACCA--TG-GGCAACTGCTTTATCATCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGGTAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTATAGTT-----TAGTCGC-GTTGTTCAATACATGTTTATAATCGTGATTGGATAGGTATTTGCACTAA---TCATCATTGGCGCTCATACTTGTCAAAATA-TT---TTCAAT-TC----TATTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCCGAATAATCCCa
gi|15 : GGTTTGTAA----------TACCT--ATATAA-CGTGAACTTGTCTGCAAT-CCT--TA--TCTTGAATATATCAGAGTCCTATCAAATAATGTAGCATCTTCTTCCTTTATGTGTCTCTTT--GACACAGC-----CTTTGTCTCAACAGTTTACGAAATCATTTGATGGAAATTGCTGT--CAGGCGAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTGTTTTATCAGCATTTACT-TCTGTTGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----AAGGGTGTAAA-------------------GTTCAATACATATTTATAATCGTGATTTGATAGGTCTTTGCATTAA---TCATCATTGGGACTCATACTTGACAAAATA-TC---TTCATC-TT----TACTGCAAACATGCAAACTCAGTCTTCGTATTTCCAATCATTCTGACATAAGAATTATCCC
gi|16 : GGTTTGTAA----------TATCT--ATATCA-TGTGAACTTGTCTGAAAT-CCT-ATAAATCTTGGGTATATCAAAGTCGTATCAACTA----AGCATC-------------TGTCTCTTT--GACACAGC-----CTATGTCTCAACAGTTTACGAAATATTTTGGTAGAAACTACAGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-AGCAACTACTTTTTCAGCATTTACT-TCTGTGGAGCTATT---------------GCAC-TA---A------AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTAGC-GTTGTCCAAGACATGTTTATAATCGTGTTTGGATAGGTATTTGCATCAA---TCATCATTGGACCTCATATTTAACAATATA-TT---TTCAAC-TC----TACTGCAAGCATGCAAACTCAATCCCAATATTTTCAGTGATTCTGACTTCAGAATAATC
gi|17 : agttgatgagcaagacGATTTGTAA----------TATCT--ATCTCA-CTTGAACTTGTCTTCAGT-CAT-ATAACTCTTGAGTATACCAAAATGGTATCAAATAATTCAACATCTCCTG----------------------ACAGC-----CTATGTCTCAACAGTTTACGAAATCATTTAATGGAAACTG---T--CAGGCAAATTT--T-TCC-TACT-----TGCTTACTACCA--TA-GGCTACTACTTTATCAGCATTTACT----GTGGAGCTATT---TTACCACTGACGATAT-TT---ACAT---TA---T---AGAA-T----ATGGGTGCTTAGTT-----TAGTCGC-GTTGT---------GTT-AT--TCGTGCTTGAATAGGTCTTTGCATCAA---TAATTATTGGTACTCACACATAACAAAATA-TC---TTCAAT-TC----TACTGCAAACATGCAAACTCAATCCCCAAATTTCCAGTCATTCTGGCTTCAGAATA
gi|18 : tagttgatgagctagaaGGTTTGTAA----------TATCT--ATATAA-CATACACTTGTCTGCAATATCT-AT----CTTGAGTACATTAGAGTCGTATCAAATAATTTAGCATCTCCGGCCTTTATGTGTCTCTTC--GACACAGC-----ATATGGTTAAACAGTTTACGAAATCATTTGATGGAAACTGCTGT----GGCAA---------------C-----TGCTT--TATCA------GCA---------------TTTACT-TCTGTGGAACAATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATTGGTGTTTAGTT-----TAGTCGC-CTTGTTCAATACATGTTTATAATCGGGATTTGATACAACTTTGCATTTA---TCATCGTTGGTACTCATACTTGACAATATG-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCTGAATAATCC
gi|19 : GGTTTGTAA----------TATCT--ATATAA-CATGAACTTGTCTGCAAT-CCT--TA--TCTTGAGTGTATCGGAGTCCTATCAAATAATTTAGTATCTCCTGCCTTTATGTGTCTCTTT--GACACAGC-----ATATGGTTAAACAGTTTACGAAATCATTGGATGGAAACTGCTGT----GGCAA---------------C-----TGCTT--TATCA------GCA---------------TTTACT-TCTGTGGAGCTATT---GAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----AAGTCGC-GTTGTTCAATACATGTTTATAATCGTGATTGGATAGGTCTTTGCATTAA---TCATCATCGGTACTCATACTTGACAAAATA-TC---TTCACC-TC----TGTTGCCAACATGCAAACTCAATCCCTATATTTCCAGTCATTCTGATTTCAGAATAAT
gi|2 : GGTTTTTAA----------TATCC--ATATCA-CGTGAACGTGTCTACATT-ACT-ATAACTCTTGAGTGTATCAGAATCGTAT---ATAAT--AACATCTCCTGCCTTTATGCATCTCTTT--GACA----------------------GTTTTCGAAATCTTTTGAGGGAAACTG---T--CAGGCAAGTTTCTT-TTA-TATT-----TGCATATTACCA--TG-GGCTACTACTTTATGAGGATTTACTGTCTGGGGAGATATT---TTACCGCTGACAACAT-TT---ACAT---AA---T---AGAATT----TTGGGTATTTTGTT-----TGGTCGC-ATTGATAAAGATATAATC-TAATTGTGTT
gi|2 : tattaataagctggaaTGTTTGGATAGATCTTTGCAACAA---TTATCAGTGGTACTCATACTTGACAAA-TA-T-----TCAAA-TC----TACTGTAAGCATGCAAACTCAATCGCCATATTTTCCGTCATTCTAACTTGAGAATAATCCCcttatctctcaatgtcctaagaatctaaacttacatttctacatttcatattttctttatgtttggatagatctttgcaacaattatcagtggtactcatacttgacaaatattcaaatctactgtaagcatgcaaactcaatcgccatattttccgtcattctaacttgagaataatccc
gi|20 : tattaataagctggaaggtttttaatatccatatcacgtgaacgtgtctacattactataactcttgagtgtatcagaatcgtatataataacatctcctgcctttatgcatctctttgacagttttcgaaatcttttgagggaaactgtcaggcaagtttcttttatatttgcatattaccatgggctactactttatgaggatttactgtctggggagatattttaccgctgacaacatttacataatagaattttgggtattttgtttggtcgcattgataaagatataatctaattgtgttcttatctctcaatgtcctaagaatctaaacttacatttctacatttcatattttctttaGGTTTGTAA----------TATCT--ATATAA-CATGAACTTGTCTGCAAT-CCT--TA--TCTTGAGTATATCAGAGTCGTATTAAA-AATTTAGCATCTCCTGCCTTAACGTGTCTCTTT--GACACAGC-----ATATGGTTAAACAGTATACGAAATCATTTGATGGAAACTGCTGC----GGCAA---------------C-----TGCTT--TATCA------GCA---------------TTTACT-TCTGTGGAGCTATT---TAACATCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTCGC-GTTGTTCAATATATGTTTATAATTGTGATTGGATAGGTCTTTGCATTAA---TCATCATTGGTACGCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCAGAATAAT
gi|21 : GGTTTGTAA----------TATCT--ATATAA-CGTGAACTTGTCTGCAAT-CCTTATA----TTGAATATATCAGAGTCGTATCAAATAATT-AGCATCTCCTGCCTTTATGTGTCTCTTT--GACACAGC-----ATATAGTAAAACAGTTTACGAAACCATTTGATGGAAACTTCTGT----GGCAA---------------C-----TGCTT-----TA--TA-AGCA-----TTT----------ACT-TCTGTGGAGCTATT---GAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----AT-AGTGTTTAGTT-----TAGTCGC-GTTGTTCAATACATGTTTATTATTGTGATTAGATAGGTCTTTGCATTAA---TCATCATTACTACTCATACTTGACAAAATA-TC---TTCAGC-TG----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCAGAATA
gi|22 : GGTTTGTAA----------TATCT--ATATAA-CGTGAACTTTTCTGCAAT-CCT--TA--TCTTGAGTATTTCAGAGTCGTATCAAATAATTTAGCATCTCCTGCCTTTATGTGTCTCTTT--GACACAGC-----CTATGGTTAAACAGTTTACGAAATCATTTGATGGAAACTGCTGT----GGTAACTGTTTTATCAGTATT-----TACTT----CTG--TG-G--AGCTA-TTTA---------ACC-TC----------------------TGAAGATAT-TA---ACAT---AA---T---AGAA-T----TTGATTGTTTAGTT-----TAGTCGC-TTTGTTCAATACATGTTTAT-ATCGTGATTGAATAGGTCTTTGCATTGA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATGCCCATATTTCCAATct
gi|23 : TTTGTTA----------TATCT--ATATCA-CGTGAACTT------------------TTCTCGAGTATATTAGAGTCGTATCAAATAATTCAGCATCTCCTGCCTTTATTTGTCTATTTAAGACACATC-----CTATGTCTCAACAGTTTACGTAATATTTTGATGTAAACTGCTGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACAA--TG-GGtc
gi|23 : tagttgatgagctagaagtGTCTTTATCTCAG---TCATCATTGGTACTCATGCTTGGCAAAATA-TC---TTCAAC-TC----TACTGTAAACATACAAACTCAATCCCCATATATCCAGCAATTCTGACTTCAGAATttacataatagaacatatgtgtctttatctcagtcatcattggtactcatgcttggcaaaatatcttcaactctactgtaaacatacaaactcaatccccatatatccagcaattctgacttcagaat
gi|24 : tagttgatgagctagaagttttgttatatctatatcacgtgaacttttctcgagtatattagagtcgtatcaaataattcagcatctcctgcctttatttgtctatttaagacacatcctatgtctcaacagtttacgtaatattttgatgtaaactgctgtcaggcaaatttctttcatatttgcttactacaatgggttacataatagaacatatgtCTCAACAGTTTACGAAATCATTTAATGGAAACTGCTGT--CGGGCAAATTTCTT-TCA-TATT-----TGCTAACTACCA--CG-GGCAACTGCTTTATCATCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTTTAGTCTAGTCGC-GTTGTTCAATACATGTTT-CAATTGTGATTGGATAGGTCTTTGCATTAA---TCATCATTGGTACCCATACTTGACAAAATA-TC---TTCAAC-TC----TGCTGC--ACATGCAAACTCAATCTCCTTATTTCCAGTCATTCTGACTTCAGAATAATCC
gi|25 : GGTTTGTAA----------TATCT--ATCTAA-CGTGAACTTGTCTGTTAT-CCT-ATAACTCTTGAGTATACCTGAATAGTATCAAATAATTTAGCATCTCCTGCCTTTAGTTGTCTCTTT--GAGACAGC-----CTATGTCTCAACAGTATACGGAATCATTTGATGGAAA---CAGT--AAGATAATTTTCTT-TCA-TATT-----TGCTTACTTCTA--TG-GGCTACTAATTTATCAGCATTTACTGTCTGTCGATTTATT---
gi|26 : tagttgatgagctagacGGTTTGTAA----------TATCT--ATAAAA-CGTGAACTTATCTGCAA--------AACT------TA------AGTTGTATCAAATAA-TTAGGATCTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----CTATGTCTCAACAGTTTACGAAATCATTTGATGGAAACTGCTGT--CAGGTAAATTTCTT-TCA-TATT-----TGCTTACAACC
gi|27 : TCGC-GTTGTTCAATACATGTTTACAATCGTGCTTGGATAGGTC----------------------------ATGCATGACAAAATA-TC---TTCATT-TC----TACTTCAAAAA-GCAAACTCAGTCCCAATAGTTTCTGTCATTCTGACTTAAGAATATTCC
gi|28 : GGTCTTTACATTAA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCATTCCTCATATTTCCAGTCATTCTGACTTCAGAATAa
gi|3 : accGGTTT-TAA----------TATTT--ATATTA-CGTGAACTTGTCTGCAAT-CCT-ATAACTCTTCAGTATATCAGAATTGTATCAAATAATTTTCCATCTCCTGCCTTTACTTGTCTCTTT--GCTATAGT-----CCATGTCTCAATAGTTTTCGAAATCGTTTGATGGAAA---CTGT--CAGGTAAGTTTCTT-TCA-TATT-----TGCTTACTATCATTTA-GG---CTAATTAATCAGCATTTAC--------GGTCTATT---TTACCACTGACGATAT-TT---ACAT---AG---T---ATAA-T----CTTGGTGTTTAGTT-----TGGTCGC-GTTGGTTAATACATGTTTCTAATTGTGtt
gi|3 : ctagttgatgaactagaaTGCTTGGATATGTCTTTG---TAAGGCTCATCACTGGTATCCATACTTGACAAATCC-TC---TTCAAC-TC----TACTGCAAACATAAAAACCCAATCCCCATATTTGCAGTCAATCTGtgtttatctctcattgtctttagaatctaaacttattctacatttcatttttaccttatgcttggatatgtctttgtaaggctcatcactggtatccatacttgacaaatcctcttcaactctactgcaaacataaaaacccaatccccatatttgcagtcaatctg
gi|30 : ctagttgatgaactagaaggttttaatatttatattacgtgaacttgtctgcaatcctataactcttcagtatatcagaattgtatcaaataattttccatctcctgcctttacttgtctctttgctatagtccatgtctcaatagttttcgaaatcgtttgatggaaactgtcaggtaagtttctttcatatttgcttactatcatttaggctaattaatcagcatttacggtctattttaccactgacgatatttacatagtataatcttggtgtttagtttggtcgcgttggttaatacatgtttctaattgtgtgtttatctctcattgtctttagaatctaaacttattctacatttcatttttaccttaGGTTTGTAA----------TATCT--ATATCA-TGTGAACTTGTCTTCAGT-CCT-ATAAATCTTGAGTATATC--AGTTGTAT
gi|31 : tagttgatgagctagaaTGGGTGTGTAGCT-----GGGACGC-GTTGATCAAAACATATTTCTAATCGTGTT
gi|4 : GGTTTGTCA----------TATCT--ACATCA-TGTGAACTTGTCTGCAAT-CCT-TTAACTCTTTAGTATATCAGAGTCATATAAAATAATTTACCATCTCCTGCCTTTATTTGTCCCTTT--GACACAGC-----CTATGCC-CAACAGTTTACGAAATCTTTTGATGGAAACTGCTGTGTCAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACAA--TG-GGAAACTACTTTATCAGCATTTACT-TTTGTGGAGCTATT---TGACCACTGACGGCAT-TT---ACAT---AA---TTGTACAA-TGTAAATGGGTGTTTAGTT-----TAGTCGCAGTT-TTCAATACATGTATATAATCGTGTTTGGATAGGTGTTTGCATCAA---TAATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAT-TC----TACTGCAGACATGCAAACTCAATCCCCATATGTCCAGTCATTCTGACTTCAGAATAATCcttagaatttaagtttattctacatttatttct
gi|5 : ctagttcatgagctagaaA----------TATCT--ATTTCG-CATGAACTTGCCTTCACT-TAT-TTAACTCTTAAATATACAATATTTATATCAAGTAATTTGTCATCTTCTTTCTTTATTCGTTTCTTT--GACAAAAA-----CTGTGACTCAACAGTTTATGACAT-AGTCGATGGAAA---CTGT--CAAACAAGTTTCTA-TCA-CATT-----TGATTGCTATC---TGCGGCTACTGCGTTTCCATTATTTACTGTCTGGGGAG---------AACAT----GGGTGT-T-------T---AG---T--------------TGGGT-----------------CGT-GTTGATCAATACATATTTTTAATCGTATTCG--TA--TCTTT-CATT
gi|5 : tagttcgtcagctagatataattggTGCTTGAATTATTCTTTGCATT------CACCATTGGTACTCATACCTTAC-AAATATTC---TTCAAG-TG----TACTGAAAAC------------TCCCCATATTTTCAATGATTCTGgtcctgataatctgaacttactgtacattccatttcttctttatgcttgaattattctttgcattcaccattggtactcataccttacaaatattcttcaagtgtactgaaaactccccatattttcaatgattctgtattc
gi|6 : tagttcgtcagctagatataattggatatctatttcgcatgaacttgccttcacttatttaactcttaaatatacaatatttatatcaagtaatttgtcatcttctttctttattcgtttctttgacaaaaactgtgactcaacagtttatgacatagtcgatggaaactgtcaaacaagtttctatcacatttgattgctatctgcggctactgcgtttccattatttactgtctggggagaacatgggtgtttagttgggtcgtgttgatcaatacatatttttaatcgtattcgtatctttcattgtcctgataatctgaacttactgtacattccatttcttctttaGATTTGTAA----------TATCT--ATATCATCGT-AACTTGTCTGCAAT-CTT-ATAACTCTTTAGTATATCAGAGTTTTATAAAATAATTTACCATCTCCTAACTGTATTTGTCTCTTT--GACACAGC-----CTATATC-CAACAGTTCACGAAAT-ATTT---------TGATGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTAACTACCA--TG-GGAAACTACTTTATCAGCATTTACG-TTTGTTAAGCTATT---TAACCACTGACAATAT-TA---ACAT---AAAAGT---ACAA-TGTATATGGGTGTTTAGTT-----TAGTTGC-ATTTTTCAATACATGTATAAAATCGTTCTTAGAAAGGTCTTTGTATCAG---TCATCATAGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTTCATCCCCATATGTCCAGTCATTCTGACTTCAGAACAATCtattc
gi|7 : ctagttcatgagctagaaGGTTTGTAA----------TATCT--GTATCA-CGTGAACTTGTCTACAAT------TGACTCTTGAGTATATCAGAGTTTAAGCAAATACTTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----GTTTGTCTCAACAGTTTACGACATCTTTAGATGGAAACTGCTGT--CCGGCAAATTTCTT-TCG-TATT-----TGCTTGCTACCA--TG-GGCATCTACTTTATCAGCATTTATT-TCTGTGGAACTATT---TTACCACTGACAATAT-TA---ACAT---AA---T---TGAT-T----ATGGGTGTTTAGTT-----TAGTCGC-GTTGTTCAATACATGTATATAATTGTGCTTGAGTATGTCTTTGCATCAA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACT---ATCATGCAAACTGAATCCCCATTTTTCCATTCATTCTGACTTCAGAATAAT
gi|8 : ctagttgatgagctaaaaGGTTTGTAA----------TAACT--ATATAA-CGTGAACTTGTCTGCAAT-CCT--TA--TCTTGAGTATATCAGAGTCCTATCAAATAATTTAGCATCTCCTGCCTTTATTTATCTCTTT--GACACAGC-----CTATGTCTCAACAGTTTCTGAAATCATTTGATGGAAACTGCTGT--CAGGTGAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTGCTTTATCAGCATTTACT-TCTGTGGAGCTATTTAATAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTCGC-ATTGCTCAATACATGTTT-TAATTGTGATTTGATAGGTCTTTGCATAAA---TCATCATTGGGAATCATACTTGACAAAATA-TC---TTTAAC-TCTTAGTACTGCAAACATGCAAACTCAGTCTCCATATTTCCAATCATTCTGACTTCAGAATAACCCCa
gi|9 : GGTTTGTAAATACAGGAGCCATCT--ATATCA-CAGGCAC--GT--GCAAT-CCT-ATAACTCTTGTGTATACCAGAAGCGTATAAAATAATTTAACATCTTCTGCCTTTATTCGTCTCTTT--GAGATAGCATAAAGTATGTCTCAACAGTTTACGAAATCATTTGCTAGAA----CTAC--CAGGCCAATTTCTT-TCA-CATT-----TGCTTACTACCA--TG-GG---CTAT----TCAGCATTTACTGTCTATGAAGCTGTT---TTACCGCTGACTATAT-AT---ACAT---AA---T---ATAA------A---------AGAT-----TAGTCGC-GTTGTTCAATACATGTTTATTATCGTGCTTGGATAGGTATTTGCATCAA---TCATCATTG-------TACTTGACAAAAAA---------AATATC----TACTACAAACATGCAAATTCAGCCCTTATATTTCTAGTAAATTTGGCTTCAGAATAATCCa
blockSeqs : ATACAGGAGC . A T A ATAAC AA ATAAA GTC A A G . A TT C A G TAA A T A A CAT TTG AAG TGT T GTAA TAGTC A C GGC T . A TTAG
blockSeqs : . . A . . ATGAC . . C A . . . A . . A G . A T A . . . . . . GTAT . . A . . . . .
blockSeqs : . . C . . ATAAA . . C A . . . A . . A G . T A C . . . . . . . . . A . . . . .
blockSeqs : . . A . . ATAAC . . C A . . . A . . A G . A T A . . . . . . . . . C . . . . .
blockSeqs : . . A . . ATAAC . . C A . . . A . . A G . A T A . . . . . . . . . A . . . . .
blockSeqs : . . A . . ATAAC . . C A . . . A . . A . . A T A . . . . . . . . . A . . . . .
blockSeqs : . . C . . ATAAC . . C A . . . A . . A . . T A C . . . . . . . . . A . . . . .
blockSeqs : . . C . . ATAAA . . C G . . . A . . A . . A T A . . . . . . . . . T . . . . .
blockSeqs : . . A . . TTAAC . . C C . . . A . . A . . A T A . . . . . . . . . C . . . . .
blockSeqs : . . A . . TTAAC . . C A . . . A . . G . . T G C . . . . . . . . . A . . . . .
blockSeqs : . . C . . ATAAC . . C A . . . A . . A . . A T A . . . . . . . . . A . . . . .
blockSeqs : . . A . . ATAAC . . C T . . . A . . A . . A T A . . . . . . . . . T . . . . .
blockSeqs : . . A . . TATA . . A A . . . A . . A . . A T A . . . . . . . . . T . . . . .
blockSeqs : . . A . . TGAC . . C G . . . A . . A . . T A A . . . . . . . . . A . . . . .
blockSeqs : . . C . . AAC . . C A . . . A . . A . . G A C . . . . . . . . . A . . . . .
blockSeqs : . . A . . TA . . C G . . . G . . T . . A T C . . . . . . . . . A . . . . .
blockSeqs : . . A . . TA . . C A . . . A . . A . . A A G . . . . . . . . . A . . . . .
blockSeqs : . . T . . TA . . C A . . . G . . . . . T A C . . . . . . . . . C . . . . .
blockSeqs : . . C . . TA . . C A . . . A . . . . . A T C . . . . . . . . . C . . . . .
blockSeqs : . . C . . AT . . C A . . . A . . . . . T G A . . . . . . . . . T . . . . .
blockSeqs : . . C . . TA . . . . . . . . . . . . . . . C . . . . . . . . . T . . . . .
blockSeqs : . . C . . TA . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . .
blockSeqs : . . C . . TA . . . . . . . . . . . . . . . C . . . . .
blockSeqs : . . A . . TA . . . . . . . . . . . C . . . . .
blockSeqs : . . C . . T . . . . . . C . . . . .
blockSeqs : A
blockSeqs : C
blockSeqCons : ** ***** ***
originalCons : GGTTTGTAA----------TATCT--ATATNA-CGTGAACTTGTCTGCAAT-CCT-ATAACTCTTGAGTATATCAGAGTCGTATCAAATAATTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----CTATGTCTCAACAGTTTACGAAATCATTTGATGGAAACTGCTGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTACTTTATCAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTCGC-GTTGTTCAATACATGTTTATAATCGTGNTTGGATAGGTCTTTGCATTAA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCAGAATAATCCC
finalCons : GGTTTGTAA----------TATCT--ATATNA-CGTGAACTTGTCTGCAAT-CCT-ATAACTCTTGAGTATATCAGAGTCGTATCAAATAATTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----CTATGTCTCAACAGTTTACGAAATCATTTGATGGAAACTGCTGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTACTTTATCAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTCGC-GTTGTTCAATACATGTTTATAATCGTGNTTGGATAGGTCTTTGCATTAA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCAGAATAATCCC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): GCATACTGTATCCCAATAGTTTCAGTGATTCTTCCTTCGGAATTATTCCAATTATACTATGCACATGTGTCATTAACATGGTTTCAACGAAGATATCACTCCACAA
Alignments
lowQualScore : 111111 1
lowQualScore : 6666666666 22 1 1 1 333333 22 44444 222 3 1 1 33333 1 22 1 2 0 0 222 1 3 2 1 333 333 333 333 1 7777 44444 1 0 1 222 1 222 1 3333
lowQualScore : .......... .. . . . ...... .. ..... ... . . . ..... . .. . . . . ... . . . . ... ... ... ... . .... ..... . . . ... . ... . ....
lowQualScore : 7777777777 11 0 5 5 777777 22 00000 777 1 5 5 88888 6 22 6 9 3 0 999 7 0 1 7 000 000 000 000 7 4444 22222 6 8 0 777 5 777 5 3333
consensus : GGTTTGTAA----------TATCT--ATATNA-CGTGAACTTGTCTGCAAT-CCT-ATAACTCTTGAGTATATCAGAGTCGTATCAAATAATTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----CTATGTCTCAACAGTTTACGAAATCATTTGATGGAAACTGCTGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTACTTTATCAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTCGC-GTTGTTCAATACATGTTTATAATCGTGNTTGGATAGGTCTTTGCATTAA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCAGAATAATCCC
Reference ( family-916 ) : GGTTTGTAA----------TATCT--ATATNA-CGTGAACTTGTCTGCAAT-CCT-ATAACTCTTGAGTATATCAGAGTCGTATCAAATAATTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----CTATGTCTCAACAGTTTACGAAATCATTTGATGGAAACTGCTGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTACTTTATCAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTCGC-GTTGTTCAATACATGTTTATAATCGTGNTTGGATAGGTCTTTGCATTAA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCAGAATAATCCC
gi|1 : GGTTTTTAA----------TATTTTGGTATCC-CGTGATCTTGTCTGCAAT-CCT-ATACTTCTTGAGTATAACAGTATCGTATAAAAAAACT--ACATCTTCTGCCTTTATTTGTCTCTTT--GACATAGC-----CT-TGTATGAACTGTTTTCAAAATATTTTGATGGAAACTGC-----CAGGTAAATTTATT-TC--TGTTCACCGTGATTACTACCA--AA-GGCTACTACTGTTTAAGCATTTACTGTCTGCGAAACTATT---TTAC-------GATAC-TT---TCAT---AG---A---ATAA-T----CTTGTTGTTAAGTT-----TTGTCGC-ATTGATCGATACATGTTTCAAATC-TGTT
gi|1 : ctaattgataaactagaaTGCTTCGATAGGTCTTTGCATGAA---TCATCATTGGTACTAATACTTGACAA---A-TCTGTTTCAAG-TC----TACTGCAAGCGTACAAACTCAATTGCCATATTTTCAGTCATTCTGGTTTCAAAATGATCCcttatctttcattgtccttataagctgaacttattttacatatcatttcttccttatgcttcgataggtctttgcatgaatcatcattggtactaatacttgacaaatctgtttcaagtctactgcaagcgtacaaactcaattgccatattttcagtcattctggtttcaaaatgatcc
gi|10 : ctaattgataaactagaaggtttttaatattttggtatcccgtgatcttgtctgcaatcctatacttcttgagtataacagtatcgtataaaaaaactacatcttctgcctttatttgtctctttgacatagccttgtatgaactgttttcaaaatattttgatggaaactgccaggtaaatttatttctgttcaccgtgattactaccaaaggctactactgtttaagcatttactgtctgcgaaactattttacgatactttcatagaataatcttgttgttaagttttgtcgcattgatcgatacatgtttcaaatctgttcttatctttcattgtccttataagctgaacttattttacatatcatttcttccttaGGTTTGTAA----------TACCT--ATATAA-CGTGAACTTGTCTGCAAT-CCT--TA--TCTTGAGTATATCAGAGTCCTATCAAATAATTTAGCATCTCCTGCTTTTATTTGTCTCTTT--GACACAGC-----CTATGCCTCAACAGTTTAGGAAATCATTTGATGGAAACTGCTGT--CAGGCGAACTGCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTGCTTTATCAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTAAGTT-----TAGTCGC-ATTGTTCAATACATGTTTATAATCGTGATTGGATAAGTCTTAGCATTAA---TCATCATTGGGACTCATACTTAACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAATCTCAGTCTCCATAATTCCAATTATTCTGACTTCAGAATAATCCC
gi|11 : GGTTTGAAA----------TACCT--ATATAA-CGTGAACTTGTCTGCAAT-CCT--TA--CCTTGAGTATATCAGAGTCCTATCAAATAATTTAGCAACTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----CTATGTCTCAATAGTTTACGAAATCATTTGATGGAAACTGCTAT--CAGGCGAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTGCTTTATCAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----AAGTCGC-GTTGTTCAATACATGTTTATAATCGTGATTGGATAGGTCTTTGCATTAA---TCATCATTGGGACTCACACTTGACAAAATA-TA---TTCAAC-TC----TACTGCAAACATGCAAACTCAGTCTCCATATTTCCAATCAATCTGACTTCAGAATAATCCCa
gi|12 : GGTTTGTAA----------TATCT--CTCTCA-CGTGAACTTGTCTGCAAT-CCT-ATAACTCTTGAGTGTACCAGAATCGTATCAAA-------------CCTGCCT--AGTTGTCTTTTT--GAGACAGC-----CTATTTCTCAACAGTTTACGAAATCTTTCGATGGAAACTG---T--CGGGCATATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCTACTACTTTATCAGCATTTACTGTCTGTGGATCTATT---TTACCACTGACAATATATACATACATTTGAA---T---AGAA-T----ATGAGCATTTAGTT-----TAGTCGC-GTTGTTCAATACATGTTTACAATCGTGCTTGGATATGGCTTTGCATCAG---TACTCATTAGTA----------ACAAAATA-TC-----AAAC-TC----TACTGCAAACAAACAAACTCAATCCCCATATTTTCAGTCATTCTGGCTTCAGAATAATCCC
gi|13 : ctagttgatgagctacaaGGTTTGTAA----------TATCT--ATATAA-CGTGAACTTGTCGGCAAT-CAT--TA--TCTTGAGTATATCAGAGTACTAT--AA-AATTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----CTATGTCTCTACAGTTTA-----TCATTTGATGGAAATTGGTGT--CAGGCGAATTTCTT-TCA-TATT-----TGGTTACTTCCA--TG-GGCAATTGCTTTATCAGCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAG-TA---ACAT---AA---T---TGAA-T----ATGGGTGTTTAGTT-----AAGTCGC-GTTGTTCAATACATGTTTATAATCTTGATTGGATAGGGTTTTGCATTAA---TCATCATTGGGACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAGTCTCCATATTTCCAATCATTCTGACTTCAGAATAATCCC
gi|14 : GGTTTGTAA----------TATCT--ATATAA-CGTGAACCTGTCTTCAAT-CCT-ATGACTCTTGA--ATATCAGAGTTGTATCAAATAACTTAGCATCTCCTGCCTTTATTTGTCATTTT--GACTCAGC-----CCATGTCTCAACAGTTTACGAAAACATTTTATGGGAAATGCCGT--C-----------TT-TCA-TATT-----TGCATACTACCA--TG-GGCAACTGCTTTATCATCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGGTAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTATAGTT-----TAGTCGC-GTTGTTCAATACATGTTTATAATCGTGATTGGATAGGTATTTGCACTAA---TCATCATTGGCGCTCATACTTGTCAAAATA-TT---TTCAAT-TC----TATTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCCGAATAATCCCa
gi|15 : GGTTTGTAA----------TACCT--ATATAA-CGTGAACTTGTCTGCAAT-CCT--TA--TCTTGAATATATCAGAGTCCTATCAAATAATGTAGCATCTTCTTCCTTTATGTGTCTCTTT--GACACAGC-----CTTTGTCTCAACAGTTTACGAAATCATTTGATGGAAATTGCTGT--CAGGCGAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTGTTTTATCAGCATTTACT-TCTGTTGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----AAGGGTGTAAA-------------------GTTCAATACATATTTATAATCGTGATTTGATAGGTCTTTGCATTAA---TCATCATTGGGACTCATACTTGACAAAATA-TC---TTCATC-TT----TACTGCAAACATGCAAACTCAGTCTTCGTATTTCCAATCATTCTGACATAAGAATTATCCC
gi|16 : GGTTTGTAA----------TATCT--ATATCA-TGTGAACTTGTCTGAAAT-CCT-ATAAATCTTGGGTATATCAAAGTCGTATCAACTA----AGCATC-------------TGTCTCTTT--GACACAGC-----CTATGTCTCAACAGTTTACGAAATATTTTGGTAGAAACTACAGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-AGCAACTACTTTTTCAGCATTTACT-TCTGTGGAGCTATT---------------GCAC-TA---A------AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTAGC-GTTGTCCAAGACATGTTTATAATCGTGTTTGGATAGGTATTTGCATCAA---TCATCATTGGACCTCATATTTAACAATATA-TT---TTCAAC-TC----TACTGCAAGCATGCAAACTCAATCCCAATATTTTCAGTGATTCTGACTTCAGAATAATC
gi|17 : agttgatgagcaagacGATTTGTAA----------TATCT--ATCTCA-CTTGAACTTGTCTTCAGT-CAT-ATAACTCTTGAGTATACCAAAATGGTATCAAATAATTCAACATCTCCTG----------------------ACAGC-----CTATGTCTCAACAGTTTACGAAATCATTTAATGGAAACTG---T--CAGGCAAATTT--T-TCC-TACT-----TGCTTACTACCA--TA-GGCTACTACTTTATCAGCATTTACT----GTGGAGCTATT---TTACCACTGACGATAT-TT---ACAT---TA---T---AGAA-T----ATGGGTGCTTAGTT-----TAGTCGC-GTTGT---------GTT-AT--TCGTGCTTGAATAGGTCTTTGCATCAA---TAATTATTGGTACTCACACATAACAAAATA-TC---TTCAAT-TC----TACTGCAAACATGCAAACTCAATCCCCAAATTTCCAGTCATTCTGGCTTCAGAATA
gi|18 : tagttgatgagctagaaGGTTTGTAA----------TATCT--ATATAA-CATACACTTGTCTGCAATATCT-AT----CTTGAGTACATTAGAGTCGTATCAAATAATTTAGCATCTCCGGCCTTTATGTGTCTCTTC--GACACAGC-----ATATGGTTAAACAGTTTACGAAATCATTTGATGGAAACTGCTGT----GGCAA---------------C-----TGCTT--TATCA------GCA---------------TTTACT-TCTGTGGAACAATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATTGGTGTTTAGTT-----TAGTCGC-CTTGTTCAATACATGTTTATAATCGGGATTTGATACAACTTTGCATTTA---TCATCGTTGGTACTCATACTTGACAATATG-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCTGAATAATCC
gi|19 : GGTTTGTAA----------TATCT--ATATAA-CATGAACTTGTCTGCAAT-CCT--TA--TCTTGAGTGTATCGGAGTCCTATCAAATAATTTAGTATCTCCTGCCTTTATGTGTCTCTTT--GACACAGC-----ATATGGTTAAACAGTTTACGAAATCATTGGATGGAAACTGCTGT----GGCAA---------------C-----TGCTT--TATCA------GCA---------------TTTACT-TCTGTGGAGCTATT---GAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----AAGTCGC-GTTGTTCAATACATGTTTATAATCGTGATTGGATAGGTCTTTGCATTAA---TCATCATCGGTACTCATACTTGACAAAATA-TC---TTCACC-TC----TGTTGCCAACATGCAAACTCAATCCCTATATTTCCAGTCATTCTGATTTCAGAATAAT
gi|2 : GGTTTTTAA----------TATCC--ATATCA-CGTGAACGTGTCTACATT-ACT-ATAACTCTTGAGTGTATCAGAATCGTAT---ATAAT--AACATCTCCTGCCTTTATGCATCTCTTT--GACA----------------------GTTTTCGAAATCTTTTGAGGGAAACTG---T--CAGGCAAGTTTCTT-TTA-TATT-----TGCATATTACCA--TG-GGCTACTACTTTATGAGGATTTACTGTCTGGGGAGATATT---TTACCGCTGACAACAT-TT---ACAT---AA---T---AGAATT----TTGGGTATTTTGTT-----TGGTCGC-ATTGATAAAGATATAATC-TAATTGTGTT
gi|2 : tattaataagctggaaTGTTTGGATAGATCTTTGCAACAA---TTATCAGTGGTACTCATACTTGACAAA-TA-T-----TCAAA-TC----TACTGTAAGCATGCAAACTCAATCGCCATATTTTCCGTCATTCTAACTTGAGAATAATCCCcttatctctcaatgtcctaagaatctaaacttacatttctacatttcatattttctttatgtttggatagatctttgcaacaattatcagtggtactcatacttgacaaatattcaaatctactgtaagcatgcaaactcaatcgccatattttccgtcattctaacttgagaataatccc
gi|20 : tattaataagctggaaggtttttaatatccatatcacgtgaacgtgtctacattactataactcttgagtgtatcagaatcgtatataataacatctcctgcctttatgcatctctttgacagttttcgaaatcttttgagggaaactgtcaggcaagtttcttttatatttgcatattaccatgggctactactttatgaggatttactgtctggggagatattttaccgctgacaacatttacataatagaattttgggtattttgtttggtcgcattgataaagatataatctaattgtgttcttatctctcaatgtcctaagaatctaaacttacatttctacatttcatattttctttaGGTTTGTAA----------TATCT--ATATAA-CATGAACTTGTCTGCAAT-CCT--TA--TCTTGAGTATATCAGAGTCGTATTAAA-AATTTAGCATCTCCTGCCTTAACGTGTCTCTTT--GACACAGC-----ATATGGTTAAACAGTATACGAAATCATTTGATGGAAACTGCTGC----GGCAA---------------C-----TGCTT--TATCA------GCA---------------TTTACT-TCTGTGGAGCTATT---TAACATCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTCGC-GTTGTTCAATATATGTTTATAATTGTGATTGGATAGGTCTTTGCATTAA---TCATCATTGGTACGCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCAGAATAAT
gi|21 : GGTTTGTAA----------TATCT--ATATAA-CGTGAACTTGTCTGCAAT-CCTTATA----TTGAATATATCAGAGTCGTATCAAATAATT-AGCATCTCCTGCCTTTATGTGTCTCTTT--GACACAGC-----ATATAGTAAAACAGTTTACGAAACCATTTGATGGAAACTTCTGT----GGCAA---------------C-----TGCTT-----TA--TA-AGCA-----TTT----------ACT-TCTGTGGAGCTATT---GAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----AT-AGTGTTTAGTT-----TAGTCGC-GTTGTTCAATACATGTTTATTATTGTGATTAGATAGGTCTTTGCATTAA---TCATCATTACTACTCATACTTGACAAAATA-TC---TTCAGC-TG----TACTGCAAACATGCAAACTCAATCCCCATATTTCCAGTCATTCTGACTTCAGAATA
gi|22 : GGTTTGTAA----------TATCT--ATATAA-CGTGAACTTTTCTGCAAT-CCT--TA--TCTTGAGTATTTCAGAGTCGTATCAAATAATTTAGCATCTCCTGCCTTTATGTGTCTCTTT--GACACAGC-----CTATGGTTAAACAGTTTACGAAATCATTTGATGGAAACTGCTGT----GGTAACTGTTTTATCAGTATT-----TACTT----CTG--TG-G--AGCTA-TTTA---------ACC-TC----------------------TGAAGATAT-TA---ACAT---AA---T---AGAA-T----TTGATTGTTTAGTT-----TAGTCGC-TTTGTTCAATACATGTTTAT-ATCGTGATTGAATAGGTCTTTGCATTGA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCAATGCCCATATTTCCAATct
gi|23 : TTTGTTA----------TATCT--ATATCA-CGTGAACTT------------------TTCTCGAGTATATTAGAGTCGTATCAAATAATTCAGCATCTCCTGCCTTTATTTGTCTATTTAAGACACATC-----CTATGTCTCAACAGTTTACGTAATATTTTGATGTAAACTGCTGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACAA--TG-GGtc
gi|23 : tagttgatgagctagaagtGTCTTTATCTCAG---TCATCATTGGTACTCATGCTTGGCAAAATA-TC---TTCAAC-TC----TACTGTAAACATACAAACTCAATCCCCATATATCCAGCAATTCTGACTTCAGAATttacataatagaacatatgtgtctttatctcagtcatcattggtactcatgcttggcaaaatatcttcaactctactgtaaacatacaaactcaatccccatatatccagcaattctgacttcagaat
gi|24 : tagttgatgagctagaagttttgttatatctatatcacgtgaacttttctcgagtatattagagtcgtatcaaataattcagcatctcctgcctttatttgtctatttaagacacatcctatgtctcaacagtttacgtaatattttgatgtaaactgctgtcaggcaaatttctttcatatttgcttactacaatgggttacataatagaacatatgtCTCAACAGTTTACGAAATCATTTAATGGAAACTGCTGT--CGGGCAAATTTCTT-TCA-TATT-----TGCTAACTACCA--CG-GGCAACTGCTTTATCATCATTTACT-TCTGTGGAGCTATT---TAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTTTAGTCTAGTCGC-GTTGTTCAATACATGTTT-CAATTGTGATTGGATAGGTCTTTGCATTAA---TCATCATTGGTACCCATACTTGACAAAATA-TC---TTCAAC-TC----TGCTGC--ACATGCAAACTCAATCTCCTTATTTCCAGTCATTCTGACTTCAGAATAATCC
gi|25 : GGTTTGTAA----------TATCT--ATCTAA-CGTGAACTTGTCTGTTAT-CCT-ATAACTCTTGAGTATACCTGAATAGTATCAAATAATTTAGCATCTCCTGCCTTTAGTTGTCTCTTT--GAGACAGC-----CTATGTCTCAACAGTATACGGAATCATTTGATGGAAA---CAGT--AAGATAATTTTCTT-TCA-TATT-----TGCTTACTTCTA--TG-GGCTACTAATTTATCAGCATTTACTGTCTGTCGATTTATT---
gi|26 : tagttgatgagctagacGGTTTGTAA----------TATCT--ATAAAA-CGTGAACTTATCTGCAA--------AACT------TA------AGTTGTATCAAATAA-TTAGGATCTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----CTATGTCTCAACAGTTTACGAAATCATTTGATGGAAACTGCTGT--CAGGTAAATTTCTT-TCA-TATT-----TGCTTACAACC
gi|27 : TCGC-GTTGTTCAATACATGTTTACAATCGTGCTTGGATAGGTC----------------------------ATGCATGACAAAATA-TC---TTCATT-TC----TACTTCAAAAA-GCAAACTCAGTCCCAATAGTTTCTGTCATTCTGACTTAAGAATATTCC
gi|28 : GGTCTTTACATTAA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTCATTCCTCATATTTCCAGTCATTCTGACTTCAGAATAa
gi|3 : accGGTTT-TAA----------TATTT--ATATTA-CGTGAACTTGTCTGCAAT-CCT-ATAACTCTTCAGTATATCAGAATTGTATCAAATAATTTTCCATCTCCTGCCTTTACTTGTCTCTTT--GCTATAGT-----CCATGTCTCAATAGTTTTCGAAATCGTTTGATGGAAA---CTGT--CAGGTAAGTTTCTT-TCA-TATT-----TGCTTACTATCATTTA-GG---CTAATTAATCAGCATTTAC--------GGTCTATT---TTACCACTGACGATAT-TT---ACAT---AG---T---ATAA-T----CTTGGTGTTTAGTT-----TGGTCGC-GTTGGTTAATACATGTTTCTAATTGTGtt
gi|3 : ctagttgatgaactagaaTGCTTGGATATGTCTTTG---TAAGGCTCATCACTGGTATCCATACTTGACAAATCC-TC---TTCAAC-TC----TACTGCAAACATAAAAACCCAATCCCCATATTTGCAGTCAATCTGtgtttatctctcattgtctttagaatctaaacttattctacatttcatttttaccttatgcttggatatgtctttgtaaggctcatcactggtatccatacttgacaaatcctcttcaactctactgcaaacataaaaacccaatccccatatttgcagtcaatctg
gi|30 : ctagttgatgaactagaaggttttaatatttatattacgtgaacttgtctgcaatcctataactcttcagtatatcagaattgtatcaaataattttccatctcctgcctttacttgtctctttgctatagtccatgtctcaatagttttcgaaatcgtttgatggaaactgtcaggtaagtttctttcatatttgcttactatcatttaggctaattaatcagcatttacggtctattttaccactgacgatatttacatagtataatcttggtgtttagtttggtcgcgttggttaatacatgtttctaattgtgtgtttatctctcattgtctttagaatctaaacttattctacatttcatttttaccttaGGTTTGTAA----------TATCT--ATATCA-TGTGAACTTGTCTTCAGT-CCT-ATAAATCTTGAGTATATC--AGTTGTAT
gi|31 : tagttgatgagctagaaTGGGTGTGTAGCT-----GGGACGC-GTTGATCAAAACATATTTCTAATCGTGTT
gi|4 : GGTTTGTCA----------TATCT--ACATCA-TGTGAACTTGTCTGCAAT-CCT-TTAACTCTTTAGTATATCAGAGTCATATAAAATAATTTACCATCTCCTGCCTTTATTTGTCCCTTT--GACACAGC-----CTATGCC-CAACAGTTTACGAAATCTTTTGATGGAAACTGCTGTGTCAGGCAAATTTCTT-TCA-TATT-----TGCTTACTACAA--TG-GGAAACTACTTTATCAGCATTTACT-TTTGTGGAGCTATT---TGACCACTGACGGCAT-TT---ACAT---AA---TTGTACAA-TGTAAATGGGTGTTTAGTT-----TAGTCGCAGTT-TTCAATACATGTATATAATCGTGTTTGGATAGGTGTTTGCATCAA---TAATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAT-TC----TACTGCAGACATGCAAACTCAATCCCCATATGTCCAGTCATTCTGACTTCAGAATAATCcttagaatttaagtttattctacatttatttct
gi|5 : ctagttcatgagctagaaA----------TATCT--ATTTCG-CATGAACTTGCCTTCACT-TAT-TTAACTCTTAAATATACAATATTTATATCAAGTAATTTGTCATCTTCTTTCTTTATTCGTTTCTTT--GACAAAAA-----CTGTGACTCAACAGTTTATGACAT-AGTCGATGGAAA---CTGT--CAAACAAGTTTCTA-TCA-CATT-----TGATTGCTATC---TGCGGCTACTGCGTTTCCATTATTTACTGTCTGGGGAG---------AACAT----GGGTGT-T-------T---AG---T--------------TGGGT-----------------CGT-GTTGATCAATACATATTTTTAATCGTATTCG--TA--TCTTT-CATT
gi|5 : tagttcgtcagctagatataattggTGCTTGAATTATTCTTTGCATT------CACCATTGGTACTCATACCTTAC-AAATATTC---TTCAAG-TG----TACTGAAAAC------------TCCCCATATTTTCAATGATTCTGgtcctgataatctgaacttactgtacattccatttcttctttatgcttgaattattctttgcattcaccattggtactcataccttacaaatattcttcaagtgtactgaaaactccccatattttcaatgattctgtattc
gi|6 : tagttcgtcagctagatataattggatatctatttcgcatgaacttgccttcacttatttaactcttaaatatacaatatttatatcaagtaatttgtcatcttctttctttattcgtttctttgacaaaaactgtgactcaacagtttatgacatagtcgatggaaactgtcaaacaagtttctatcacatttgattgctatctgcggctactgcgtttccattatttactgtctggggagaacatgggtgtttagttgggtcgtgttgatcaatacatatttttaatcgtattcgtatctttcattgtcctgataatctgaacttactgtacattccatttcttctttaGATTTGTAA----------TATCT--ATATCATCGT-AACTTGTCTGCAAT-CTT-ATAACTCTTTAGTATATCAGAGTTTTATAAAATAATTTACCATCTCCTAACTGTATTTGTCTCTTT--GACACAGC-----CTATATC-CAACAGTTCACGAAAT-ATTT---------TGATGT--CAGGCAAATTTCTT-TCA-TATT-----TGCTAACTACCA--TG-GGAAACTACTTTATCAGCATTTACG-TTTGTTAAGCTATT---TAACCACTGACAATAT-TA---ACAT---AAAAGT---ACAA-TGTATATGGGTGTTTAGTT-----TAGTTGC-ATTTTTCAATACATGTATAAAATCGTTCTTAGAAAGGTCTTTGTATCAG---TCATCATAGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACTGCAAACATGCAAACTTCATCCCCATATGTCCAGTCATTCTGACTTCAGAACAATCtattc
gi|7 : ctagttcatgagctagaaGGTTTGTAA----------TATCT--GTATCA-CGTGAACTTGTCTACAAT------TGACTCTTGAGTATATCAGAGTTTAAGCAAATACTTTAGCATCTCCTGCCTTTATTTGTCTCTTT--GACACAGC-----GTTTGTCTCAACAGTTTACGACATCTTTAGATGGAAACTGCTGT--CCGGCAAATTTCTT-TCG-TATT-----TGCTTGCTACCA--TG-GGCATCTACTTTATCAGCATTTATT-TCTGTGGAACTATT---TTACCACTGACAATAT-TA---ACAT---AA---T---TGAT-T----ATGGGTGTTTAGTT-----TAGTCGC-GTTGTTCAATACATGTATATAATTGTGCTTGAGTATGTCTTTGCATCAA---TCATCATTGGTACTCATACTTGACAAAATA-TC---TTCAAC-TC----TACT---ATCATGCAAACTGAATCCCCATTTTTCCATTCATTCTGACTTCAGAATAAT
gi|8 : ctagttgatgagctaaaaGGTTTGTAA----------TAACT--ATATAA-CGTGAACTTGTCTGCAAT-CCT--TA--TCTTGAGTATATCAGAGTCCTATCAAATAATTTAGCATCTCCTGCCTTTATTTATCTCTTT--GACACAGC-----CTATGTCTCAACAGTTTCTGAAATCATTTGATGGAAACTGCTGT--CAGGTGAATTTCTT-TCA-TATT-----TGCTTACTACCA--TG-GGCAACTGCTTTATCAGCATTTACT-TCTGTGGAGCTATTTAATAACCTCTGAAGATAT-TA---ACAT---AA---T---AGAA-T----ATGGGTGTTTAGTT-----TAGTCGC-ATTGCTCAATACATGTTT-TAATTGTGATTTGATAGGTCTTTGCATAAA---TCATCATTGGGAATCATACTTGACAAAATA-TC---TTTAAC-TCTTAGTACTGCAAACATGCAAACTCAGTCTCCATATTTCCAATCATTCTGACTTCAGAATAACCCCa
gi|9 : GGTTTGTAAATACAGGAGCCATCT--ATATCA-CAGGCAC--GT--GCAAT-CCT-ATAACTCTTGTGTATACCAGAAGCGTATAAAATAATTTAACATCTTCTGCCTTTATTCGTCTCTTT--GAGATAGCATAAAGTATGTCTCAACAGTTTACGAAATCATTTGCTAGAA----CTAC--CAGGCCAATTTCTT-TCA-CATT-----TGCTTACTACCA--TG-GG---CTAT----TCAGCATTTACTGTCTATGAAGCTGTT---TTACCGCTGACTATAT-AT---ACAT---AA---T---ATAA------A---------AGAT-----TAGTCGC-GTTGTTCAATACATGTTTATTATCGTGCTTGGATAGGTATTTGCATCAA---TCATCATTG-------TACTTGACAAAAAA---------AATATC----TACTACAAACATGCAAATTCAGCCCTTATATTTCTAGTAAATTTGGCTTCAGAATAATCCa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): GCATACTGTATCCCAATAGTTTCAGTGATTCTTCCTTCGGAATTATTCCAATTATACTATGCACATGTGTCATTAACATGGTTTCAACGAAGATATCACTCCACAA