lowQualScore : 4444444 33333333333 111 111 111 1111 111111 11 1111 4444444444444 111111 11 111 222 111 111 1111111 111 5555555555 1 222222 111111 11 1 999999999999999999999999 66666666666666 444444444
lowQualScore : 6 3333333 0 44444444444 888 000 5 4 6 2 5 55 8 55 5 888 11 5 5 2 5 6666 5 000000 7 3 4 00 0 0 5555 22 22 5 1111111111111 0 5 1 777777 11 3 1 000 333 000 222 55 1111111 3 1 555 77 0 1 6 77 6 5 55 4 5 3333333333 1 6 1 5 4 4 3 4 333333 1 333333 22 0 4 2 2 666666666666666666666666 66666666666666 555555555
lowQualScore : . ....... . ........... ... ... . . . . . .. . .. . ... .. . . . . .... . ...... . . . .. . . .... .. .. . ............. . . . ...... .. . . ... ... ... ... .. ....... . . ... .. . . . .. . . .. . . .......... . . . . . . . . ...... . ...... .. . . . . ........................ .............. .........
lowQualScore : 0 5555555 8 77777777777 777 111 0 5 5 0 4 11 9 99 0 222 55 0 5 9 0 6666 0 888888 0 4 0 99 7 7 9999 11 44 7 9999999999999 4 7 7 999999 44 0 7 000 333 000 999 99 6666666 0 7 333 99 3 3 0 99 0 0 88 3 8 4444444444 4 6 4 0 0 6 2 4 666666 0 888888 00 8 0 2 3 000000000000000000000000 00000000000000 000000000
consensus : NNCAATTGTAAACGACAATAATAAGTAGTAAGGTATAAAGCTAAT--ACTTACC--TGTGATCCA-ANGACACACANGTACCGCAGCANACCGCA-TCGTGC-NTCACG-CAGAACGTGTCCAGGATGTTC-C---CATGG-TGN-A-GCTGACATNTCTCNGTGGGCNGGGACGN---TGCTTGCTGT-GN-CC-TCGGCC--GGGT-CTTCATC-CCCGCCTNGTCCAGGATCTTGTGCGTTTTCGTCTT---GCCA--AATCTATTGTGATANT-CNANACATTTNNCACAGA--AATATTCATCACAGTC--CACACANAAGTTANTNGCCTCCACATTTTTCCCN---TCTGNTGAGCACGGTGTACAAGAATAGTCGTAATACACGTCACAACCTTTNTCNATN----GAACNCGC--AAATCCTCCCCCAGTCGCCATTTTGNAGCGTTCTGATATTTACNCTNCGCATAAAGTNNANATATGACAGCCTAGAGTGTTCGGTACTCAATACCAAGAAGA-GATTAT
Reference ( gi|5 ) : TACAATTGTAAACGACAATAATGAA-AG----GTATAAAGTTAAT-CACGTACA--TGTGCTCCA-AGGACACGCAAGTACTACAGCATACCGCA-TCATGT-ATCACA-CAGAATGTATCCAGAATGTTC-C---TATGG-TGG-A-GTTGACATCTCTCTGTGGGCAGGGACGA---TACTTGTTGT-GT-CC-TCGGCC--GGGT-CTTCATT-TTATCCTTATCCAGGATTTGGTGCAGTTTCATTTT---GCCG--AACTTATTGTGATAAT-CCAGACATTTCTGACAGA--AATATTCATCGCAGTC--CACGCATAAGCTAATAGCCTCCACATTTTTCCCG---ATGGACGAGCACGGTGTACAAGAATAATCATAAAACACATCAGAACCCTTGTCTATT----GAACGCGT--AAATCCTCCCCAAGTCGCCATTTTGTAACGTTCTAATATTTACACTAC-------GTTTAG---CGATAACCTA----ATTAGCTACCCAATACGCGGAAAACGATTAT
gi|3 : CAATTGTAAACGACAATAATAAA-AGTAAGGTATAAAGTTAAT-CACGTACG--TGTGCTCCA-AGGACACGCAAGTACTACAGCATACCGCA-TCATGT-ATCACA-CAGAATGTGTCCAGAATGTTC-C---CATGG-TGG-A-GTTGGCATCTCTCTGTGGGCACGGACGA---TACTTGTTGT-GT-CC-TCGGCC--GGGT-CTTCATT-TTAACCTTATCCAGGATTTGGTGCATTTTCATTTT---GCTC--AACTTATTGTGATAAT-CCAGACATTTCTGACAGA--AATATTCATCACAGTC--CACACATAAGCTAATAGCCTCCACGTTTATCCCG---GAAGACGAGCACGGTGTACAAGAATAATCGTAAAACACATCACAACCCTTGTCTATT----GAACGCGT--AAATCCGCCTGCTGTCGCCATTTTATAACGTTCT-ATAT
gi|6 : atgcgatgcgaacgctctaccactatcccatcgctgcggtgttgattatttataaatgtggatatattgaccacacatacaggtattttaattgtattTAATAAGTAG----ATCTAGATCTAATGTGCTTACACTTGTGAAACA-AGGAGACACACATGTCACAG---ACCTGA-TCATGT-TTCACA-CAGAATTTGTCCAGAATATAC-C----ATAA-TGC-A-GCTCACATCTCTCCGTGGGTTGGAACGT---CGCCTGCGAT-GA-CC-CC---C--TGAA-CATCATTGCTGTC----TC---------GT-CA-TCTCATCTT---GCCA--AATCTATTATGATCTT-TCAAACAT--CTGACACACAAATATTCATCAAAGTC--CACACAAAACTTTATAGCCTCCACATTTTGCCCATCCATG---GAGCACGTGGTACAAGAATAATCATTGAACACGTCTGATCCTTTATCAATA----GAACCCGC--CAAACCTCCCCATGTCGCCATT
gi|1 : taatgtggatatgtcattgttatatgtTATAAA--CAAA-AACTTACT--TGTGATGTA-AAGAAACGCACGTGCTGCAGCACACCTCA-TCATGC-TTTACA-CAGAATGTGTCCAGAATGTTT-C---CATGA-TGC-A-GCTGACATCTCGCAGTGGGTAGTGACGA---TGTTTGCTGT-GA-CC-CC---C--GGGC-TTTTATC-CCCGCCTGGTCCAAGATCTGGTGCGTTTTCATCTT---GCCA--AATCGATTGTGAAACT-GTACACATTTGTCACAGA--AATGGTCATCACAATC--CACACAGAAGTTAGTGGCTTCAACATTCCTCCCC---TCTGATGAGCACGGTGTACAACAATAGTCATAATACAAATCGCAGCCTTTGTCAATG----GACCTTAC--AAATCCTCCCCTAGTCGCCA--TTGTAGTATACTGATACTT-TATTACGCATAAAGTTTAC---TGACAACCTA----GTTAAGTACgtttggccatacgggtatgttacctgctgaaaattaatgatagt
gi|9 : taactcatacctgcgggataatgtagtaatgtcagatatgtttcccaatatattatacattaagtacatgtacaatatataTGTAAA-CTAAT----ATACC--TGTGTTCTA-ACGCTACACAAACATGGCAGCACAGAACA-CCGTG--ATCAGAGCAGTATGTTTTTAGGATCTGC-CCACTATGTCTGG-A-----ACATGGTTCTGTTGA----AACAAATTTACTC-TTCT-GT-TTATC--CC--ATAT-TTTCACC-TTATCCTCTCCCAAAACTTTATG--GTT---TTTCAAGGCTGGAAAATTGTTGTGTAAAT-CTAGACATATTACACAAT--AAAAATCATCACAGTTGGTACA-ATAA-TTAGTTGCTTCAACAGTTTTtagtttatatatatcccacaataccaagaagaaattatacttctatttttacttcttggta
gi|4 : tatttAAAGT------ACCTACT--TGTGAAATA-ATGACACACATGTACCGCAGCAAACCGCA-TCATGC-CGAACG-CAGAATGTGTCCAGGATGTTC-C---CATGG-TGC-A-GCTGGCATTTCTCGGTTGGATGGGAAGT---TGTTTGCTGT-G-------GGCCCCGGGT-CTTCATC-CCCGCCTGGTCTAGGATCGTGTGTGTTTTCGTCTT---GCCA--AATGTATGGTAATGCT-TGACACAATTAAAACAGA--AATATTCCTCACACTC--CACACAGAAGTTACTCGCCTCCACATTTTTACCT---TCTGCTGAGCAAGGTGTACAAGAATAGTCGAAATATTCGTCA----CATTCTCTATTCCAAGATCTTCC--AAATCCTCCCCCAGTCGCCATTTTGAAGCGTTCTAGTATTTACCCTTT-------GTAAAGATATGATAGCCTAGAGTATTCG----TCAATACCAAGAAGA-GATTATgttatgtctgttttcacaggttaaacatatgtaatcaaatgtttcctcagatcctccc
gi|8 : aACTTACC--TGTGTCCTA-TCGCTATACAAACTCCACAGCAGACGACA-TCGTGA-GTGCCG-CAGTACATATCCATCACTTTA-C---AAGCG-TGG-GTGCTG-CATATGTCGGTGGGCAGGTAAGT---TGGTTTCTGCAGT-CC----ACT--GGATAC--CATG-TCTGCTTTATCAACTATTTTGTGTCCTTTCGTTAT---TCCA--AGTTTATTATGA-AACACAAGACATTTATCACAAA--AGTTCTGCTCACAGTC--GACACATaaatctacttctagtttcgcttcccggtaaggagagaagcgttcgacaactcagaccggatctagg
gi|10 : atcctACTTACC--TGTGATCCATAGCA-ATACAGGCACAGCAGCAGAC-GCAATTGTGTTGTC-CA-CAGAACATGTCAAGT-TGTTTGT---TATGG-TGACG-GCTG-CACATCTCTGTGccacgtaacgcctctttattgtgaccatctctggcacaggatgaacacggaaagtcaaacaaaatgtctgatccgccctccaccgatctggaatacctcgtcgccatt
gi|2 : A-ATGACACACATGTAACGCAGCACACGGCA-TCATGC-CGGACG-CAGAATGTGTCCAGGATGTTC-C---CATGA-TGC-A-GCTGACATTTCTCCGTGGGCTGTGAAGT---TGTTTGCTGT-GGGCC-TCGAT------T-CTTCATC-TCCTCCTGGTCCAGGATCGTGTGTGTTTTCAATTT---GCCA--ATTCTATGGTTATACT-TGACACATTTAACACAGA--AATATTCCTCACACTC--CACACAGAAGTTATTCGCCTCCACATTTTTTCCA---TCTGCTGTGCACAATGCACACGAATAGTCAAAATATTCGTCACAACCTCCTTCCG------AAAAGTGTCCAAATCCTCCCCCAGACGTCATTTTGAAGTATTCtctggggagtccggaagtttcctgatatttgaagcaatacttgttttatcctggagtacatgtgtctgcatctccgtaaagcggttatgttgttgtagacatgtttcacacaagtatgcgtgacattggtcgcagtaattctcacatttcacatatttcttctccacggaacaaggtgtac
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): CACATTCATTTACTGTTCATTATCACAGTCATGTGATGTGGCATGTACTATTGTTATTTACTGTTGTATGGTGTTTAGGGTCGCTTTCAAGAATTTTTCAGTCATATCGTGACAGTGTCTACTTGAGACAGTATTCTGAGCACTGTCACACTGGAGTATCATGCCGCAGACACATGGTATGATACCCAACCCAGTCACATTATACTGACACCGGGCCAACCAGACCTAGAATGCTTAGCGTCAAGCGAGGAAGCTTCTAGTACCATTTTTAAAGTCTTTTGTATGACCCGGCCGAGGATCGAACCCACGACCTTTCACATGCAAGGCGGACGCTCTACCACTAGACCACGCCGCGGTC
Unaligned ( gi|11 ): TCAATCTAATCGTGGCAGTATTCTGAGCGCTGCTAACATAAAAATGCTGGGCGCCAATCGACGAAGACTCTAGTACCATTTGTGGTATAACCAGGCCGGAGATTGAGCCCACAACCTTCCGCTTGCGAATGTGGATGCTCTAAGACATGCCCACCGTTGCGGTTTCATAATGATTAAGTATAAAGAATTCATGAATATCATTAAGTGCTAAGCAATTAGAATAAA
Unaligned ( gi|12 ): ATGTTTAGCATCGTTTTCACGAGAAGTTTATATTCCCATTTTTCAAGTATTTGGTATGACGCGGCCGGGGAACGAACCCAAAACCATTTAAATGCGAGTCAGGTGTTCTACCACTAAGTCACAACTGCGGTTAGTCAGAGTATGATACCTAAGTTTTCACTTTGTAAATAAACTGAAGTGATGAGGTGCTTC
Unaligned ( gi|13 ): CATGATTCCTATACTAGACCAATTCCAGGTATGCATAGAGACAAGACAGTAGGCTTAAAGTACCATTTTCAAACCTTTGGTACAACACTGTCATGAAACTCACAATACTTAGCATTCAAAGTCAACACTTCCACTAAGCCATCTCAGTCCCCAAAAACAATCTTTGACAACTTTTAAGAGTAAGGATGA
Unaligned ( gi|14 ): GTTACCTGTGGTTAATAGCGATACACGCGGCGCAATAAACGGCATCATGGTCATTACAAAACATGTCCAGGACCTTGTTGTTGTGGTCATGAC
Unaligned ( gi|15 ): CGGGAATTAAACCCCAAACCTTCCAAATGCGAAGTGGATGCTCTGACCGCTACGGTATCATTAAATTTAAAGATTAATGGCATTAT
Unaligned ( gi|16 ): TACATACACAAAATTGAGTCTTTAGTCAATAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 44444 1 111111 1111111 11 333333333333 11 11 5555555555555555555555555555555555555555555555555555555555555 1
lowQualScore : 00000 9 8 66 1 666 333333 1 44 1 2 4 1 5555555 1 777 44 9999 00 1 1 66 22 777 1 8888 4 555555555555 444444 2 22 33 1 0 88 44 666 66 1 11 1 22 0 777 777 5 1 4 1 3333 0 66 66 00 11 4 66 1 44 4 2222 5 44 1 22 8 2222222222222222222222222222222222222222222222222222222222222 0
lowQualScore : ..... . . .. . ... ...... . .. . . . . ....... . ... .. .... .. . . .. .. ... . .... . ............ ...... . .. .. . . .. .. ... .. . .. . .. . ... ... . . . . .... . .. .. .. .. . .. . .. . .... . .. . .. . ............................................................. .
lowQualScore : 00000 2 9 11 2 999 777777 0 77 0 4 0 2 1111111 2 000 77 7777 66 0 0 11 99 888 1 8888 4 444444444444 999999 0 66 88 0 1 00 66 888 11 0 99 0 00 7 888 111 3 0 4 0 0000 4 99 99 00 33 3 77 0 99 0 6666 7 99 0 22 0 2222222222222222222222222222222222222222222222222222222222222 0
consensus : NNCAATTGTAAACGACAATAATAAG-AG-AAGGTATAAA-CTAAT-A--CTTAC--CTGTG--NTCCAANGAC-ACACANGCGCCGCAGCANACCGC-ATCGTG-CNTCA-CGCAGAACGTGTCCAGGA---TGTTC-CCATGGTG-CA-GCTG--ACATCTCTCCG--TGGGCNG---GGACG---TTGCT-TGCTGT-GN-CCTCG--GCCGGGT-CTTCATCTCCGCCTNGTCCAGGATCTNGTGCGTTTTC--GTCTTGCC--AAATCTATTGTGATACTCNAGACATTTNNCACAGAAATATTCATCACA---GTCCACACA--GAAGTTANTCGC-CTCCACATTTTTCCCGTCCGCCGAGCAC--GGTGTACAAGAATAGTCGTAAN-ACACGTCACANCCTCT-NTCCATNGANCNCGCAAAT-CCTCCCCCAGTCGCCATTTTGTAGCGTTCTAATA-TTTAC-CTACG--TAAAGTTTA----CGACAGCCTAG---AGT----ATTCG--TA-----CTCAATACCAAGAAGA-GATTAT
Reference ( family-913 ) : NNCAATTGTAAACGACAATAATAAGTAGTAAGGTATAAAGCTAAT-A--CTTAC--CTGTG--ATCCAANGAC-ACACANGTACCGCAGCANACCGC-ATCGTG-CNTCA-CGCAGAACGTGTCCAGGA---TGTTC-CCATGGTG-NA-GCTG--ACATNTCTCNG--TGGGCNG---GGACG---NTGCT-TGCTGT-GN-CCTCG--GCCGGGT-CTTCATCCCCGCCTNGTCCAGGATCTTGTGCGTTTTC--GTCTTGCC--AAATCTATTGTGATANTCNANACATTTNNCACAGAAATATTCATCACA---GTCCACACA--NAAGTTANTNGC-CTCCACATTTTTCCCNTCTGNTGAGCAC--GGTGTACAAGAATAGTCGTAAT-ACACGTCACAACCTTT-NTCNATNGAACNCGCAAAT-CCTCCCCCAGTCGCCATTTTGNAGCGTTCTGATA-TTTACNCTNCGCATAAAGTNNANATATGACAGCCTAG---AGT----GTTCG-GTA-----CTCAATACCAAGAAGA-GATTAT
gi|1 : TATAAA-CAAAA-A--CTTAC--TTGTG--ATGTAAAGAA-ACGCACGTGCTGCAGCACACCTC-ATCATG-CTTTA-CACAGAATGTGTCCAGAA---TGTTT-CCATGATG-CA-GCTG--ACATCTCGCAG--TGGGTAG---TGACG---ATGTT-TGCTGT-GA-CCCC-----CGGGC-TTTTATCCCCGCCTGGTCCAAGATCTGGTGCGTTTTC--ATCTTGCC--AAATCGATTGTGAAACTGTACACATTTGTCACAGAAATGGTCATCACA---ATCCACACA--GAAGTTAGTGGC-TTCAACATTCCTCCCCTCTGATGAGCAC--GGTGTACAACAATAGTCATAAT-ACAAATCGCAGCCTTT-GTCAATGGACCTTACAAAT-CCTCCCCTAGTCGCCA--TTGTAGTATACTGATACTTTA--TTACGCATAAAGTTTAC---TGACAACCTAGTTAAGTACTAGTTTATATATATCCCACAATACCAAGAAGA-AATTAT
gi|10 : taactcatacctgcgggataatgtagtaatgtcagatatgtttcccaatatattatacattaagtacatgtacaatatata-A--CTTAC--CTGTG--ATCCATAGCA-ATACAGGCACAGCAGCAGA-CGCAATTGTGTTGTC--CACAGAACATGT-CAAGT---TGTTTGTTATGGTGACG-GCTGC-ACATCTCTGTGTCTGGGGAGTCCGGAAG---TTTCC-TGATAT------TTGAAGC---------AATACTTGTTTTATCCTGGAGTACATGTGTCTGC--ATCT--CCGTAAAGCGGTTATGTTGTTGTAGACATGTTTCACACAAGTATGCGTGACATTGGT---CGCA--GTAATT-CTCACATTTCACATATTTCTTCTCCACGGAACAA--GGTGTACacttctatttttacttcttggta
gi|14 : TTAC--CTGTG--GT-TAATAGCGATACACGCGGCGCAATAAACGGC-ATCATG--GTCATTACAAAACATGTCCAGGACCTTGTTG-TTGTGGT
gi|2 : gTATAAA---AGA-A--CCTAC--TTGTGGAAT--AATGAC-ACACATGTAACGCAGCACACGGC-ATCATG-CCGGA-CGCAGAATGTGTCCAGGA---TGTTC-CCATGATG-CA-GCTG--ACATTTCTCCG--TGGGCTG---TGAAG---TTGTT-TGCTGT-GGGCCTCG--AT----T-CTTCATCTCCTCCTGGTCCAGGATCGTGTGTGTTTTC--AATTTGCC--AATTCTATGGTTATACTTGACACATTTAACACAGAAATATTCCTCACA---CTCCACACA--GAAGTTATTCGC-CTCCACATTTTTTCCATCTGCTGTGCAC--AATGCACACGAATAGTCAAAAT-ATTCGTCACAACCTCC-TTCCGAAAAGTGTCCAAAT-CCTCCCCCAGACGTCATTTTGAAGTATTC----G-TT---------------GTGAA------ACAGCCTAG---CTT----AATCG----------TTAATACCAAGAAGA-GAcatgac
gi|3 : ggaatgtttactaatatattaataaaactgatgtgctattatCAATTGTAAACGACAATAATAAA-AGTAAGGTATAAAGTTAATCA--CGTAC--GTGTG--CTCCAAGGAC-ACGCAAGTACTACAGCATACCGC-ATCATG-TATCA-CACAGAATGTGTCCAGAA---TGTTC-CCATGGTG-GA-GTTG--GCATCTCTCTG--TGGGCAC---GGACG---ATACT-TGTTGT-GT-CCTCG--GCCGGGT-CTTCATTTTAACCTTATCCAGGATTTGGTGCATTTTC--ATTTTGCT--CAACTTATTGTGATAATCCAGACATTTCTGACAGAAATATTCATCACA---GTCCACACA--TAAGCTAATAGC-CTCCACGTTTATCCCGGAAGACGAGCAC--GGTGTACAAGAATAATCGTAAA-ACACATCACAACCCTT-GTCTATTGAACGCGTAAAT-CCGCCTGCTGTCGCCATTTTATAACGTTCT-ATA-Tatttttatctattttagttccggttccttatcgccaatgcggccatcgacgatacataccggatctagag
gi|4 : atgcgatgcgaacgctctaccactatcccatcgctgcggtgttgattatttataaatgtggatatattgaccacacatacaggtattttaattgtattAGT-A--CCTAC--TTGTG--AAATAATGAC-ACACATGTACCGCAGCAAACCGC-ATCATG-CCGAA-CGCAGAATGTGTCCAGGA---TGTTC-CCATGGTG-CA-GCTG--GCATTTCTCGG--TTGGATG---GGAAG---TTGTT-TGCTGT-GGGCC------CCGGGT-CTTCATCCCCGCCTGGTCTAGGATCGTGTGTGTTTTC--GTCTTGCC--AAATGTATGGTAATGCTTGACACAATTAAAACAGAAATATTCCTCACA---CTCCACACA--GAAGTTACTCGC-CTCCACATTTTTACCTTCTGCTGAGCAA--GGTGTACAAGAATAGTCGAAAT-ATTCGTCACATTCTCTATTCCA-AGATCTTCCAAAT-CCTCCCCCAGTCGCCATTTTGAAGCGTTCTAGTA-TTTACCCTTTG--TAAAG-----ATATGATAGCCTAG---AGT----ATTCG----------TCAATACCAAGAAGA-GATTAT
gi|5 : aaaCAATTGTAAACGACAATAATGA-----AAGGTATAAAGTTAATCA--CGTAC--ATGTG--CTCCAAGGAC-ACGCAAGTACTACAGCATACCGC-ATCATG-TATCA-CACAGAATGTATCCAGAA---TGTTC-CTATGGTG-GA-GTTG--ACATCTCTCTG--TGGGCAG---GGACG---ATACT-TGTTGT-GT-CCTCG--GCCGGGT-CTTCATTTTATCCTTATCCAGGATTTGGTGCAGTTTC--ATTTTGCC--GAACTTATTGTGATAATCCAGACATTTCTGACAGAAATATTCATCGCA---GTCCACGCA--TAAGCTAATAGC-CTCCACATTTTTCCCGATGGACGAGCAC--GGTGTACAAGAATAATCATAAA-ACACATCAGAACCCTT-GTCTATTGAACGCGTAAAT-CCTCCCCAAGTCGCCATTTTGTAACGTTCTAATA-TTTACACTAC-------GTTTAG---CGATAACCTA-----------ATTAG-CTA-----CCCAATACGCGGAAAACGATTATaaatctacttctagtttcgcttcccggtaaggagagaagcgttcgacaactcagaccggatctagg
gi|6 : taTAATAAGTAG----ATCTAGATCTAAT-GTGCTTACACTTGTG--AAACAAGGAG-ACACACATGTCACAG---ACCTG-ATCATG-TTTCA-CACAGAATTTGTCCAGAA---TA-TA-CCATAATG-CA-GCTC--ACATCTCTCCG--TGGGTTG---GAACG---TCGCC-TGCGAT-GA-CCC-----CCTGAA-CATCATTGCTGTCTCGTC----ATC----------TC--ATCTTGCC--AAATCTATTATGATCTTTCAAACATCTGACACACAAATATTCATCAAA---GTCCACACA--AAACTTTATAGC-CTCCACATTTTGCCCATCCATGGAGCAC--GTGGTACAAGAATAATCATTGA-ACACGTCTGATCCTTT-ATCAATAGAACCCGCCAAA-CCTCCCCATGTCGCCATT
gi|8 : taatgtggatatgtcattgttatatgtT-A--CTTAC--CTGTG--TCCTATCGCT-ATACAAACTCCACAGCAGACGAC-ATCGTG-AGTGC-CGCAGTACATATCCATCA---CTTTA-CAAGCGTG-GGTGCTG---CATATGTCGG--TGGGCAG---GTAAG---TTGGT-TTCTGCAGT-CC-----ACTGGATAC--CATGTCTGCTTTATCAACTATTTTGTGTCCTTTC--GTTATTCC--AAGTTTATTATGAAACACAAGACATTTATCACAAAAGTTCTGCTCACA---GTCGACACATCCACGTAA--CGC-CTCTTTATTGTGACCATCT-CTG-GCACAGGATGAACACGGAAAGTCA-AACAAAATGTCTGATCCGCC-CTCCACCGATCTGG--AATACCTC-----GTCGCCATTgtttggccatacgggtatgttacctgctgaaaattaatgatagt
gi|9 : atccTGTAAA-CTAAT-A----TAC--CTGTG--TTCTAACGCT-ACACAAACATGGCAGCACAGAAC-ACCGTG--ATCAGAGCAGTATGTTTTTAGGA---TCTGC-CCACTATG-T---CTGGAACATGGTTCTG--T----TG---AAACAAATTTACTCTTCTGT--T-TATC----CCATAT-TTTCACCTTATCCTCTCCCAAAACTTTATGGTTTTTCAAGGCTGG----AAAATTGTTGTGTAAATCTAGACATATTACACAATAAAAATCATCACA---GTTGGTACA--ATAATTAGTTGC-TTCAACAGTTTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CACATTCATTTACTGTTCATTATCACAGTCATGTGATGTGGCATGTACTATTGTTATTTACTGTTGTATGGTGTTTAGGGTCGCTTTCAAGAATTTTTCAGTCATATCGTGACAGTGTCTACTTGAGACAGTATTCTGAGCACTGTCACACTGGAGTATCATGCCGCAGACACATGGTATGATACCCAACCCAGTCACATTATACTGACACCGGGCCAACCAGACCTAGAATGCTTAGCGTCAAGCGAGGAAGCTTCTAGTACCATTTTTAAAGTCTTTTGTATGACCCGGCCGAGGATCGAACCCACGACCTTTCACATGCAAGGCGGACGCTCTACCACTAGACCACGCCGCGGTC
Unaligned ( gi|11 ): TCAATCTAATCGTGGCAGTATTCTGAGCGCTGCTAACATAAAAATGCTGGGCGCCAATCGACGAAGACTCTAGTACCATTTGTGGTATAACCAGGCCGGAGATTGAGCCCACAACCTTCCGCTTGCGAATGTGGATGCTCTAAGACATGCCCACCGTTGCGGTTTCATAATGATTAAGTATAAAGAATTCATGAATATCATTAAGTGCTAAGCAATTAGAATAAA
Unaligned ( gi|12 ): ATGTTTAGCATCGTTTTCACGAGAAGTTTATATTCCCATTTTTCAAGTATTTGGTATGACGCGGCCGGGGAACGAACCCAAAACCATTTAAATGCGAGTCAGGTGTTCTACCACTAAGTCACAACTGCGGTTAGTCAGAGTATGATACCTAAGTTTTCACTTTGTAAATAAACTGAAGTGATGAGGTGCTTC
Unaligned ( gi|13 ): CATGATTCCTATACTAGACCAATTCCAGGTATGCATAGAGACAAGACAGTAGGCTTAAAGTACCATTTTCAAACCTTTGGTACAACACTGTCATGAAACTCACAATACTTAGCATTCAAAGTCAACACTTCCACTAAGCCATCTCAGTCCCCAAAAACAATCTTTGACAACTTTTAAGAGTAAGGATGA
Unaligned ( gi|15 ): CGGGAATTAAACCCCAAACCTTCCAAATGCGAAGTGGATGCTCTGACCGCTACGGTATCATTAAATTTAAAGATTAATGGCATTAT
Unaligned ( gi|16 ): TACATACACAAAATTGAGTCTTTAGTCAATAAA
Alignments
lowQualScore : 33333 22 1111111 333333333333 1111 11 4444444444444444444444 8888888888888888888888888888 1
lowQualScore : 66666 7 33 8 66 1 666 666 1 44 1 2 2 4 1 5555555 1 777 44 777 444 99 5 66 22 777 1 777 4 555555555555 33 8 0 44 1 0 77 44 666 66 1 11 0 22 0 777 888 5 2 4 5 0000 0 66 33 1 11 1 66 1 44 1 2222 5 44 6 11 6 6 0 8888888888888888888888 2222222222222222222222222222 0
lowQualScore : ..... . .. . .. . ... ... . .. . . . . . ....... . ... .. ... ... .. . .. .. ... . ... . ............ .. . . .. . . .. .. ... .. . .. . .. . ... ... . . . . .... . .. .. . .. . .. . .. . .... . .. . .. . . . ...................... ............................ .
lowQualScore : 00000 3 77 9 11 2 999 333 0 77 0 1 4 0 2 1111111 2 000 77 000 555 55 4 11 99 888 1 888 4 444444444444 00 9 9 88 0 1 22 66 888 11 9 99 1 00 7 888 000 3 9 4 4 1111 4 99 66 0 33 0 77 7 99 0 6666 7 99 7 33 7 7 8 2222222222222222222222 2222222222222222222222222222 0
consensus : NNCAATTGTAAACGACAATAATAAG-AG-AAGGTATAAA-CTAAT-A--CTTAC--CTGTGNTCTAANGAC-ACACANGCGCCGCAGCANACCGC-ATCGTG-CNTCA-CGCAGAACGTGTCCAGGA---TGTTC-C---CATGGTG-CAGCTG--ACATCTCTCCG--TGGGCNG---GGACG---TTGCT-TGCTGT-GN-CCTCG--GCCGGGT-CTTCATCTCCGCCTNGTCCAGGATCTNGTGCGTTTTC--GTCTTGCC--AAATCTATTGTGATACTCNAGACATTTNNCACAGAAATATTCATCACA---GTCCACACA--GAAGTTANTCGC-CTCCACATTTTTCCCGTCCGCCGAGCAC--GGTGTACAAGAATAGTCGNAANACACGTCACANCCTCT-NTCCATNGANCNCGCAAAT-CCTCCCCCAGTCGCCATTTTGTAG-CGTTCTGATA-T-TTA-C-CTACG--TAAAGTTTA-C-GATAGCCTAG---AGTA----TTCG-TA-------CTCAATACCAAGAAGA-GATTAT
Reference ( family-913 ) : NNCAATTGTAAACGACAATAATAAG-AG-AAGGTATAAA-CTAAT-A--CTTAC--CTGTGNTCCAANGAC-ACACANGCGCCGCAGCANACCGC-ATCGTG-CNTCA-CGCAGAACGTGTCCAGGA---TGTTC-C---CATGGTG-CAGCTG--ACATCTCTCCG--TGGGCNG---GGACG---TTGCT-TGCTGT-GN-CCTCG--GCCGGGT-CTTCATCTCCGCCTNGTCCAGGATCTNGTGCGTTTTC--GTCTTGCC--AAATCTATTGTGATACTCNAGACATTTNNCACAGAAATATTCATCACA---GTCCACACA--GAAGTTANTCGC-CTCCACATTTTTCCCGTCCGCCGAGCAC--GGTGTACAAGAATAGTCGTAANACACGTCACANCCTCT-NTCCATNGANCNCGCAAAT-CCTCCCCCAGTCGCCATTTTGTAG-CGTTCTAATA-T-TTA-C-CTACG--TAAAGTTTA-C-GACAGCCTAG---AGTA----TTCG-TA-------CTCAATACCAAGAAGA-GATTAT
gi|1 : TATAAA-CAAAA-A--CTTAC--TTGTGATGTAAAGAA-ACGCACGTGCTGCAGCACACCTC-ATCATG-CTTTA-CACAGAATGTGTCCAGAA---TGTTT-C---CATGATG-CAGCTG--ACATCTCGCAG--TGGGTAG---TGACG---ATGTT-TGCTGT-GA-CCCC-----CGGGC-TTTTATCCCCGCCTGGTCCAAGATCTGGTGCGTTTTC--ATCTTGCC--AAATCGATTGTGAAACTGTACACATTTGTCACAGAAATGGTCATCACA---ATCCACACA--GAAGTTAGTGGC-TTCAACATTCCTCCCCTCTGATGAGCAC--GGTGTACAACAATAGTCATAATACAAATCGCAGCCTTT-GTCAATGGACCTTACAAAT-CCTCCCCTAGTCGCCA--TTGTAG-TATACTGATACT-TTA---TTACGCATAAAGTTTA-CTGACAACCTAGTTAAGTACTAGTTTA-TATATATCCCACAATACCAAGAAGA-AATTAT
gi|10 : taactcatacctgcgggataatgtagtaatgtcagatatgtttcccaatatattatacattaagtacatgtacaatatata-A--CTTAC--CTGTGATCCATAGCA-ATACAGGCACAGCAGCAGA-CGCAATTGTGTTGTC--CACAGAACATGT-CAAGT---TGTTTGT---TATGGTGACGGCTGC-ACATCTCTGTGTCTGGGGAGTCCGGAAG---TTTCC-TGATAT------TTGAAGC--AATACTT-------GTTTTATCCTGGAGTACATGTGTCTGC--ATCT--CCGTAAAGCGGTTATGTTGTTGTAGACATGTTTCACACAAGTATGCGTGACATTGGT---CGCA--GTAATT-CTCACATTTCACATATTTCTTCTCCACGGAACAA--GGTGTACacttctatttttacttcttggta
gi|14 : TTAC--CTGTGGT-TAATAGCGATACACGCGGCGCAATAAACGGC-ATCATG--GTCATTACAAAACATGTCCAGGACCTTGTTG-T---TGTGGT--CA--TG--AC
gi|2 : gTATAAA---AGA-A--CCTAC--TTGTGGAATAATGAC-ACACATGTAACGCAGCACACGGC-ATCATG-CCGGA-CGCAGAATGTGTCCAGGA---TGTTC-C---CATGATG-CAGCTG--ACATTTCTCCG--TGGGCTG---TGAAG---TTGTT-TGCTGT-GGGCCTCG--AT----T-CTTCATCTCCTCCTGGTCCAGGATCGTGTGTGTTTTC--AATTTGCC--AATTCTATGGTTATACTTGACACATTTAACACAGAAATATTCCTCACA---CTCCACACA--GAAGTTATTCGC-CTCCACATTTTTTCCATCTGCTGTGCAC--AATGCACACGAATAGTCAAAATATTCGTCACAACCTCC-TTCCGAAAAGTGTCCAAAT-CCTCCCCCAGACGTCATTTTGAAG-TATTC----G-T-T---------G--TGAA---------ACAGCCTAG---CTTA----ATCG-----------TTAATACCAAGAAGA-GA
gi|3 : ggaatgtttactaatatattaataaaactgatgtgctattatCAATTGTAAACGACAATAATAAA-AGTAAGGTATAAAGTTAATCA--CGTAC--GTGTGCTCCAAGGAC-ACGCAAGTACTACAGCATACCGC-ATCATG-TATCA-CACAGAATGTGTCCAGAA---TGTTC-C---CATGGTG-GAGTTG--GCATCTCTCTG--TGGGCAC---GGACG---ATACT-TGTTGT-GT-CCTCG--GCCGGGT-CTTCATTTTAACCTTATCCAGGATTTGGTGCATTTTC--ATTTTGCT--CAACTTATTGTGATAATCCAGACATTTCTGACAGAAATATTCATCACA---GTCCACACA--TAAGCTAATAGC-CTCCACGTTTATCCCGGAAGACGAGCAC--GGTGTACAAGAATAATCGTAAAACACATCACAACCCTT-GTCTATTGAACGCGTAAAT-CCGCCTGCTGTCGCCATTTTATAA-CGTTCT-ATA-T-atttttatctattttagttccggttccttatcgccaatgcggccatcgacgatacataccggatctagag
gi|4 : atgcgatgcgaacgctctaccactatcccatcgctgcggtgttgattatttataaatgtggatatattgaccacacatacaggtattttaattgtattAGT-A--CCTAC--TTGTGAAATAATGAC-ACACATGTACCGCAGCAAACCGC-ATCATG-CCGAA-CGCAGAATGTGTCCAGGA---TGTTC-C---CATGGTG-CAGCTG--GCATTTCTCGG--TTGGATG---GGAAG---TTGTT-TGCTGT-GGGCC------CCGGGT-CTTCATCCCCGCCTGGTCTAGGATCGTGTGTGTTTTC--GTCTTGCC--AAATGTATGGTAATGCTTGACACAATTAAAACAGAAATATTCCTCACA---CTCCACACA--GAAGTTACTCGC-CTCCACATTTTTACCTTCTGCTGAGCAA--GGTGTACAAGAATAGTCGAAATATTCGTCACATTCTCTATTCCA-AGATCTTCCAAAT-CCTCCCCCAGTCGCCATTTTGAAG-CGTTCTAGTA-T-TTACC-CTTTG--TAAAG-ATA-T-GATAGCCTAG---AGTA----TTCG-----------TCAATACCAAGAAGA-GATTAT
gi|5 : aaaCAATTGTAAACGACAATAATGA-----AAGGTATAAAGTTAATCA--CGTAC--ATGTGCTCCAAGGAC-ACGCAAGTACTACAGCATACCGC-ATCATG-TATCA-CACAGAATGTATCCAGAA---TGTTC-C---TATGGTG-GAGTTG--ACATCTCTCTG--TGGGCAG---GGACG---ATACT-TGTTGT-GT-CCTCG--GCCGGGT-CTTCATTTTATCCTTATCCAGGATTTGGTGCAGTTTC--ATTTTGCC--GAACTTATTGTGATAATCCAGACATTTCTGACAGAAATATTCATCGCA---GTCCACGCA--TAAGCTAATAGC-CTCCACATTTTTCCCGATGGACGAGCAC--GGTGTACAAGAATAATCATAAAACACATCAGAACCCTT-GTCTATTGAACGCGTAAAT-CCTCCCCAAGTCGCCATTTTGTAA-CGTTCTAATA-T-TTA-CACTAC-------GTTTAGC-GATAACCTA-------A----TTAGCTA-------CCCAATACGCGGAAAACGATTATaaatctacttctagtttcgcttcccggtaaggagagaagcgttcgacaactcagaccggatctagg
gi|6 : taTAATAAGTAG-A---TCTAGATCTAAT-GTGCTTACACTTGTGAAACAAGGAG-ACACACATGTCACAG---ACCTG-ATCATG-TTTCA-CACAGAATTTGTCCAGAA---TAT-A-C---CATAATG-CAGCTC--ACATCTCTCCG--TGGGTTG---GAACG---TCGCC-TGCGAT-GA-CCC-----CCTGAA-CATCATTGCTGTCTCGTC----ATC----------TC--ATCTTGCC--AAATCTATTATGATCTTTCAAACATCTGACACACAAATATTCATCAAA---GTCCACACA--AAACTTTATAGC-CTCCACATTTTGCCCATCCATGGAGCAC--GTGGTACAAGAATAATCATTGAACACGTCTGATCCTTT-ATCAATAGAACCCGCCAAA-CCTCCCCATGTCGCCATTGTTTGGCCATACGGGTA-TGTTA-C-CTGCT--GAAAATTAA-T-GATAG
gi|8 : taatgtggatatgtcattgttatatgtT-A--CTTAC--CTGTGTCCTATCGCT-ATACAAACTCCACAGCAGACGAC-ATCGTG-AGTGC-CGCAGTACATATCCATCA---CTTTA-CAAGCGTGG-G-T-GCTG---CATATGTCGG--TGGGCAG---GTAAG---TTGGT-TTCTGCAGT-CC-----ACTGGATAC--CATGTCTGCTTTATCAACTATTTTGTGTCCTTTC--GTTATTCC--AAGTTTATTATGAAACACAAGACATTTATCACAAAAGTTCTGCTCACA---GTCGACACATCCACGTAA--CGC-CTCTTTATTGTGACCATCT-CTG-GCACAGGATGAACACGGAAAGTCAAACAAAATGTCTGATCCGCC-CTCCACCGATCTGG--AATACCTC-----GTCGCCATTt
gi|9 : atccTGTAAA-CTAAT-A----TAC--CTGTGTTCTAACGCT-ACACAAACATGGCAGCACAGAAC-ACCGTG--ATCAGAGCAGTATGTTTTTAGGA---TCTGC-C---CACTATG-T--CTGGAACATGGTTCTG--T----TG---AAACAAATTTACTCTTCTGT--T-TATC----CCATAT-TTTCACCTTATCCTCTCCCAAAACTTTATGGTTTTTCAAGGCTGG----AAAATTGTTGTGTAAATCTAGACATATTACACAATAAAAATCATCACA---GTTGGTACA--ATAATTAGTTGC-TTCAACAGTTTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CACATTCATTTACTGTTCATTATCACAGTCATGTGATGTGGCATGTACTATTGTTATTTACTGTTGTATGGTGTTTAGGGTCGCTTTCAAGAATTTTTCAGTCATATCGTGACAGTGTCTACTTGAGACAGTATTCTGAGCACTGTCACACTGGAGTATCATGCCGCAGACACATGGTATGATACCCAACCCAGTCACATTATACTGACACCGGGCCAACCAGACCTAGAATGCTTAGCGTCAAGCGAGGAAGCTTCTAGTACCATTTTTAAAGTCTTTTGTATGACCCGGCCGAGGATCGAACCCACGACCTTTCACATGCAAGGCGGACGCTCTACCACTAGACCACGCCGCGGTC
Unaligned ( gi|11 ): TCAATCTAATCGTGGCAGTATTCTGAGCGCTGCTAACATAAAAATGCTGGGCGCCAATCGACGAAGACTCTAGTACCATTTGTGGTATAACCAGGCCGGAGATTGAGCCCACAACCTTCCGCTTGCGAATGTGGATGCTCTAAGACATGCCCACCGTTGCGGTTTCATAATGATTAAGTATAAAGAATTCATGAATATCATTAAGTGCTAAGCAATTAGAATAAA
Unaligned ( gi|12 ): ATGTTTAGCATCGTTTTCACGAGAAGTTTATATTCCCATTTTTCAAGTATTTGGTATGACGCGGCCGGGGAACGAACCCAAAACCATTTAAATGCGAGTCAGGTGTTCTACCACTAAGTCACAACTGCGGTTAGTCAGAGTATGATACCTAAGTTTTCACTTTGTAAATAAACTGAAGTGATGAGGTGCTTC
Unaligned ( gi|13 ): CATGATTCCTATACTAGACCAATTCCAGGTATGCATAGAGACAAGACAGTAGGCTTAAAGTACCATTTTCAAACCTTTGGTACAACACTGTCATGAAACTCACAATACTTAGCATTCAAAGTCAACACTTCCACTAAGCCATCTCAGTCCCCAAAAACAATCTTTGACAACTTTTAAGAGTAAGGATGA
Unaligned ( gi|15 ): CGGGAATTAAACCCCAAACCTTCCAAATGCGAAGTGGATGCTCTGACCGCTACGGTATCATTAAATTTAAAGATTAATGGCATTAT
Unaligned ( gi|16 ): TACATACACAAAATTGAGTCTTTAGTCAATAAA
Alignments
lowQualScore : 33333 22 1111111 333333333333 1111 11 4444444444444444444444 8888888888888888888888888888 1
lowQualScore : 66666 7 33 8 66 1 666 666 1 44 1 2 2 4 1 5555555 1 777 44 777 444 99 5 66 22 777 1 777 4 555555555555 33 8 0 44 1 0 77 44 666 66 1 11 0 22 0 777 888 5 2 4 5 0000 0 66 22 1 11 1 66 1 44 1 2222 5 44 6 11 6 6 0 8888888888888888888888 2222222222222222222222222222 0
lowQualScore : ..... . .. . .. . ... ... . .. . . . . . ....... . ... .. ... ... .. . .. .. ... . ... . ............ .. . . .. . . .. .. ... .. . .. . .. . ... ... . . . . .... . .. .. . .. . .. . .. . .... . .. . .. . . . ...................... ............................ .
lowQualScore : 00000 3 77 9 11 2 999 333 0 77 0 1 4 0 2 1111111 2 000 77 000 555 55 4 11 99 888 1 888 4 444444444444 00 9 9 88 0 1 22 66 888 11 9 99 1 00 7 888 000 3 9 4 4 1111 4 99 44 0 33 0 77 7 99 0 6666 7 99 7 00 7 7 8 2222222222222222222222 2222222222222222222222222222 0
consensus : NNCAATTGTAAACGACAATAATAAG-AG-AAGGTATAAA-CTAAT-A--CTTAC--CTGTGNTCTAANGAC-ACACANGCGCCGCAGCANACCGC-ATCGTG-CNTCA-CGCAGAACGTGTCCAGGA---TGTTC-C---CATGGTG-CAGCTG--ACATCTCTCCG--TGGGCNG---GGACG---TTGCT-TGCTGT-GN-CCTCG--GCCGGGT-CTTCATCTCCGCCTNGTCCAGGATCTNGTGCGTTTTC--GTCTTGCC--AAATCTATTGTGATACTCNAGACATTTNNCACAGAAATATTCATCACA---GTCCACACA--GAAGTTANTCGC-CTCCACATTTTTCCCGTCCGCCGAGCAC--GGTGTACAAGAATAGTCGNAANACACGTCACANCCTCT-NTCCATNGANCNCGCAAAT-CCTCCCCCAGTCGCCATTTTGTAG-CGTTCTGATA-T-TTA-C-CTACG--TAAAGTTTA-C-GATAGCCTAG---AGTA----TTCG-TA-------CTCAATACCAAGAAGA-GATTAT
Reference ( family-913 ) : NNCAATTGTAAACGACAATAATAAG-AG-AAGGTATAAA-CTAAT-A--CTTAC--CTGTGNTCTAANGAC-ACACANGCGCCGCAGCANACCGC-ATCGTG-CNTCA-CGCAGAACGTGTCCAGGA---TGTTC-C---CATGGTG-CAGCTG--ACATCTCTCCG--TGGGCNG---GGACG---TTGCT-TGCTGT-GN-CCTCG--GCCGGGT-CTTCATCTCCGCCTNGTCCAGGATCTNGTGCGTTTTC--GTCTTGCC--AAATCTATTGTGATACTCNAGACATTTNNCACAGAAATATTCATCACA---GTCCACACA--GAAGTTANTCGC-CTCCACATTTTTCCCGTCCGCCGAGCAC--GGTGTACAAGAATAGTCGNAANACACGTCACANCCTCT-NTCCATNGANCNCGCAAAT-CCTCCCCCAGTCGCCATTTTGTAG-CGTTCTGATA-T-TTA-C-CTACG--TAAAGTTTA-C-GATAGCCTAG---AGTA----TTCG-TA-------CTCAATACCAAGAAGA-GATTAT
gi|1 : TATAAA-CAAAA-A--CTTAC--TTGTGATGTAAAGAA-ACGCACGTGCTGCAGCACACCTC-ATCATG-CTTTA-CACAGAATGTGTCCAGAA---TGTTT-C---CATGATG-CAGCTG--ACATCTCGCAG--TGGGTAG---TGACG---ATGTT-TGCTGT-GA-CCCC-----CGGGC-TTTTATCCCCGCCTGGTCCAAGATCTGGTGCGTTTTC--ATCTTGCC--AAATCGATTGTGAAACTGTACACATTTGTCACAGAAATGGTCATCACA---ATCCACACA--GAAGTTAGTGGC-TTCAACATTCCTCCCCTCTGATGAGCAC--GGTGTACAACAATAGTCATAATACAAATCGCAGCCTTT-GTCAATGGACCTTACAAAT-CCTCCCCTAGTCGCCA--TTGTAG-TATACTGATACT-TTA---TTACGCATAAAGTTTA-CTGACAACCTAGTTAAGTACTAGTTTA-TATATATCCCACAATACCAAGAAGA-AATTAT
gi|10 : taactcatacctgcgggataatgtagtaatgtcagatatgtttcccaatatattatacattaagtacatgtacaatatata-A--CTTAC--CTGTGATCCATAGCA-ATACAGGCACAGCAGCAGA-CGCAATTGTGTTGTC--CACAGAACATGT-CAAGT---TGTTTGT---TATGGTGACGGCTGC-ACATCTCTGTGTCTGGGGAGTCCGGAAG---TTTCC-TGATAT------TTGAAGC--AATACTT-------GTTTTATCCTGGAGTACATGTGTCTGC--ATCT--CCGTAAAGCGGTTATGTTGTTGTAGACATGTTTCACACAAGTATGCGTGACATTGGT---CGCA--GTAATT-CTCACATTTCACATATTTCTTCTCCACGGAACAA--GGTGTACacttctatttttacttcttggta
gi|14 : TTAC--CTGTGGT-TAATAGCGATACACGCGGCGCAATAAACGGC-ATCATG--GTCATTACAAAACATGTCCAGGACCTTGTTG-T---TGTGGT--CA--TG--AC
gi|2 : gTATAAA---AGA-A--CCTAC--TTGTGGAATAATGAC-ACACATGTAACGCAGCACACGGC-ATCATG-CCGGA-CGCAGAATGTGTCCAGGA---TGTTC-C---CATGATG-CAGCTG--ACATTTCTCCG--TGGGCTG---TGAAG---TTGTT-TGCTGT-GGGCCTCG--AT----T-CTTCATCTCCTCCTGGTCCAGGATCGTGTGTGTTTTC--AATTTGCC--AATTCTATGGTTATACTTGACACATTTAACACAGAAATATTCCTCACA---CTCCACACA--GAAGTTATTCGC-CTCCACATTTTTTCCATCTGCTGTGCAC--AATGCACACGAATAGTCAAAATATTCGTCACAACCTCC-TTCCGAAAAGTGTCCAAAT-CCTCCCCCAGACGTCATTTTGAAG-TATTC----G-T-T---------G--TGAA---------ACAGCCTAG---CTTA----ATCG-----------TTAATACCAAGAAGA-GA
gi|3 : ggaatgtttactaatatattaataaaactgatgtgctattatCAATTGTAAACGACAATAATAAA-AGTAAGGTATAAAGTTAATCA--CGTAC--GTGTGCTCCAAGGAC-ACGCAAGTACTACAGCATACCGC-ATCATG-TATCA-CACAGAATGTGTCCAGAA---TGTTC-C---CATGGTG-GAGTTG--GCATCTCTCTG--TGGGCAC---GGACG---ATACT-TGTTGT-GT-CCTCG--GCCGGGT-CTTCATTTTAACCTTATCCAGGATTTGGTGCATTTTC--ATTTTGCT--CAACTTATTGTGATAATCCAGACATTTCTGACAGAAATATTCATCACA---GTCCACACA--TAAGCTAATAGC-CTCCACGTTTATCCCGGAAGACGAGCAC--GGTGTACAAGAATAATCGTAAAACACATCACAACCCTT-GTCTATTGAACGCGTAAAT-CCGCCTGCTGTCGCCATTTTATAA-CGTTCT-ATA-T-atttttatctattttagttccggttccttatcgccaatgcggccatcgacgatacataccggatctagag
gi|4 : atgcgatgcgaacgctctaccactatcccatcgctgcggtgttgattatttataaatgtggatatattgaccacacatacaggtattttaattgtattAGT-A--CCTAC--TTGTGAAATAATGAC-ACACATGTACCGCAGCAAACCGC-ATCATG-CCGAA-CGCAGAATGTGTCCAGGA---TGTTC-C---CATGGTG-CAGCTG--GCATTTCTCGG--TTGGATG---GGAAG---TTGTT-TGCTGT-GGGCC------CCGGGT-CTTCATCCCCGCCTGGTCTAGGATCGTGTGTGTTTTC--GTCTTGCC--AAATGTATGGTAATGCTTGACACAATTAAAACAGAAATATTCCTCACA---CTCCACACA--GAAGTTACTCGC-CTCCACATTTTTACCTTCTGCTGAGCAA--GGTGTACAAGAATAGTCGAAATATTCGTCACATTCTCTATTCCA-AGATCTTCCAAAT-CCTCCCCCAGTCGCCATTTTGAAG-CGTTCTAGTA-T-TTACC-CTTTG--TAAAG-ATA-T-GATAGCCTAG---AGTA----TTCG-----------TCAATACCAAGAAGA-GATTAT
gi|5 : aaaCAATTGTAAACGACAATAATGA-----AAGGTATAAAGTTAATCA--CGTAC--ATGTGCTCCAAGGAC-ACGCAAGTACTACAGCATACCGC-ATCATG-TATCA-CACAGAATGTATCCAGAA---TGTTC-C---TATGGTG-GAGTTG--ACATCTCTCTG--TGGGCAG---GGACG---ATACT-TGTTGT-GT-CCTCG--GCCGGGT-CTTCATTTTATCCTTATCCAGGATTTGGTGCAGTTTC--ATTTTGCC--GAACTTATTGTGATAATCCAGACATTTCTGACAGAAATATTCATCGCA---GTCCACGCA--TAAGCTAATAGC-CTCCACATTTTTCCCGATGGACGAGCAC--GGTGTACAAGAATAATCATAAAACACATCAGAACCCTT-GTCTATTGAACGCGTAAAT-CCTCCCCAAGTCGCCATTTTGTAA-CGTTCTAATA-T-TTA-CACTAC-------GTTTAGC-GATAACCTA-------A----TTAGCTA-------CCCAATACGCGGAAAACGATTATaaatctacttctagtttcgcttcccggtaaggagagaagcgttcgacaactcagaccggatctagg
gi|6 : taTAATAAGTAG-A---TCTAGATCTAAT-GTGCTTACACTTGTGAAACAAGGAG-ACACACATGTCACAG---ACCTG-ATCATG-TTTCA-CACAGAATTTGTCCAGAA---TAT-A-C---CATAATG-CAGCTC--ACATCTCTCCG--TGGGTTG---GAACG---TCGCC-TGCGAT-GA-CCC-----CCTGAA-CATCATTGCTGTCTCGTC----ATC----------TC--ATCTTGCC--AAATCTATTATGATCTTTCAAACATCTGACACACAAATATTCATCAAA---GTCCACACA--AAACTTTATAGC-CTCCACATTTTGCCCATCCATGGAGCAC--GTGGTACAAGAATAATCATTGAACACGTCTGATCCTTT-ATCAATAGAACCCGCCAAA-CCTCCCCATGTCGCCATTGTTTGGCCATACGGGTA-TGTTA-C-CTGCT--GAAAATTAA-T-GATAG
gi|8 : taatgtggatatgtcattgttatatgtT-A--CTTAC--CTGTGTCCTATCGCT-ATACAAACTCCACAGCAGACGAC-ATCGTG-AGTGC-CGCAGTACATATCCATCA---CTTTA-CAAGCGTGG-G-T-GCTG---CATATGTCGG--TGGGCAG---GTAAG---TTGGT-TTCTGCAGT-CC-----ACTGGATAC--CATGTCTGCTTTATCAACTATTTTGTGTCCTTTC--GTTATTCC--AAGTTTATTATGAAACACAAGACATTTATCACAAAAGTTCTGCTCACA---GTCGACACATCCACGTAA--CGC-CTCTTTATTGTGACCATCT-CTG-GCACAGGATGAACACGGAAAGTCAAACAAAATGTCTGATCCGCC-CTCCACCGATCTGG--AATACCTC-----GTCGCCATTt
gi|9 : atccTGTAAA-CTAAT-A----TAC--CTGTGTTCTAACGCT-ACACAAACATGGCAGCACAGAAC-ACCGTG--ATCAGAGCAGTATGTTTTTAGGA---TCTGC-C---CACTATG-T--CTGGAACATGGTTCTG--T----TG---AAACAAATTTACTCTTCTGT--T-TATC----CCATAT-TTTCACCTTATCCTCTCCCAAAACTTTATGGTTTTTCAAGGCTGG----AAAATTGTTGTGTAAATCTAGACATATTACACAATAAAAATCATCACA---GTTGGTACA--ATAATTAGTTGC-TTCAACAGTTTT
blockSeqs : GTAG A GT C TG T ACT ATC A CG G A G A G TTGTC C CCT TG AAG ACG GA T TC GA TCC A AAT C GGGCCTCGA CG A CT T AC TG AAG GT T GT TT TTG TCC C C A C CACG AG AA T AC A AT C AA G GTCC A CA C TA . G CCCTTTGTAAAGATAT GCTTAATCGT C
blockSeqs : . . GT C . T C GAA T A C G A . A GTCAT C . G . CA C C . CT . A . . GTCCTCGG CG A AA G GT TG A . C TG AA . G T C . A TGCT . GT A AC A T T TT A GCGT . CT . TA . . CCTGCTGAAAATTAAT GAGTATTCGT .
blockSeqs : TC . . C C CTC T C T A C . A CCGGA T . C . CA . T . CA . C . . GTCCTCGG CG . CG T TG CA A . A CC CT . G A A . G AGAC . GA T AC T G C TT T TTCC . CA . GG . . CACTACGTTTAGC ATTAGCTACC .
blockSeqs : C . . G T AAA G C A A T . A TATCA T . C . GA . G . AT . A . . TTGAAG CT . AT G GT TG A . C TG AA . T C C . T TGCT . AT A AG A G T TA A GCGT . AA . T . . GTGAA
blockSeqs : . . . C G CTC T C T A A . A CCGAA T . C . CA . T . CA . C . . AGTCCA TG . TG T TG CA G . A CC CT . G A A . G GGAC . AT A TG T A A CC A CCGC . AT . . . .
blockSeqs : . . G T AAA G C A A T . A TATCA T . C . GA . C . TT . C . . GGGCC CA . TG C TT TC A . T TC GA . T A A . A CATG . AA A TG T C C A T TGG . .
blockSeqs : . . T A TCC G G C G G . A TTTCA T . A . CA . G . CA . A . . GACCC . . AT T TT GT A . C CA AT . A G C . A TCT .
blockSeqs : . . T C TTC C T A T C . G AGTGC C . A . T . T . T . C . . TTATC . . G C . . G . A CT TA . A . T .
blockSeqs : . C GT C T A A . . G ATCAG T . C . T .
blockSeqCons : GT GTCCTCGG**** CCCNCTGAATGC**********
originalCons : NNCAATTGTAAACGACAATAATAAG-AG-AAGGTATAAA-CTAAT-A--CTTAC--CTGTGNTCTAANGAC-ACACANGCGCCGCAGCANACCGC-ATCGTG-CNTCA-CGCAGAACGTGTCCAGGA---TGTTC-C---CATGGTG-CAGCTG--ACATCTCTCCG--TGGGCNG---GGACG---TTGCT-TGCTGT-GN-CCTCG--GCCGGGT-CTTCATCTCCGCCTNGTCCAGGATCTNGTGCGTTTTC--GTCTTGCC--AAATCTATTGTGATACTCNAGACATTTNNCACAGAAATATTCATCACA---GTCCACACA--GAAGTTANTCGC-CTCCACATTTTTCCCGTCCGCCGAGCAC--GGTGTACAAGAATAGTCGNAANACACGTCACANCCTCT-NTCCATNGANCNCGCAAAT-CCTCCCCCAGTCGCCATTTTGTAG-CGTTCTGATA-T-TTA-C-CTACG--TAAAGTTTA-C-GATAGCCTAG---AGTA----TTCG-TA-------CTCAATACCAAGAAGA-GATTAT
finalCons : NNCAATTGTAAACGACAATAATAAG-AG-AAGGTATAAAGTTAAT-A--CTTAC--CTGTGNTCTAANGAC-ACACANGCGCCGCAGCANACCGC-ATCGTG-CNTCA-CGCAGAACGTGTCCAGGA---TGTTC-C---CATGGTG-CAGCTG--ACATCTCTCCG--TGGGCNG---GGACG---TTGCT-TGCTGTGTCCTCGG----CCGGGT-CTTCATCTCCGCCTNGTCCAGGATCTNGTGCGTTTTC--GTCTTGCC--AAATCTATTGTGATACTCNAGACATTTNNCACAGAAATATTCATCACA---GTCCACACA--GAAGTTANTCGC-CTCCACATTTTTCCCGTCCGCCGAGCAC--GGTGTACAAGAATAGTCGNAANACACGTCACANCCTCT-NTCCATNGANCNCGCAAAT-CCTCCCCCAGTCGCCATTTTGTAG-CGTTCTGATA-T-TTACCCNCTGAATGC----------GATAGCCTAG---AGTA----TTCG-TA-------CTCAATACCAAGAAGA-GATTAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CACATTCATTTACTGTTCATTATCACAGTCATGTGATGTGGCATGTACTATTGTTATTTACTGTTGTATGGTGTTTAGGGTCGCTTTCAAGAATTTTTCAGTCATATCGTGACAGTGTCTACTTGAGACAGTATTCTGAGCACTGTCACACTGGAGTATCATGCCGCAGACACATGGTATGATACCCAACCCAGTCACATTATACTGACACCGGGCCAACCAGACCTAGAATGCTTAGCGTCAAGCGAGGAAGCTTCTAGTACCATTTTTAAAGTCTTTTGTATGACCCGGCCGAGGATCGAACCCACGACCTTTCACATGCAAGGCGGACGCTCTACCACTAGACCACGCCGCGGTC
Unaligned ( gi|11 ): TCAATCTAATCGTGGCAGTATTCTGAGCGCTGCTAACATAAAAATGCTGGGCGCCAATCGACGAAGACTCTAGTACCATTTGTGGTATAACCAGGCCGGAGATTGAGCCCACAACCTTCCGCTTGCGAATGTGGATGCTCTAAGACATGCCCACCGTTGCGGTTTCATAATGATTAAGTATAAAGAATTCATGAATATCATTAAGTGCTAAGCAATTAGAATAAA
Unaligned ( gi|12 ): ATGTTTAGCATCGTTTTCACGAGAAGTTTATATTCCCATTTTTCAAGTATTTGGTATGACGCGGCCGGGGAACGAACCCAAAACCATTTAAATGCGAGTCAGGTGTTCTACCACTAAGTCACAACTGCGGTTAGTCAGAGTATGATACCTAAGTTTTCACTTTGTAAATAAACTGAAGTGATGAGGTGCTTC
Unaligned ( gi|13 ): CATGATTCCTATACTAGACCAATTCCAGGTATGCATAGAGACAAGACAGTAGGCTTAAAGTACCATTTTCAAACCTTTGGTACAACACTGTCATGAAACTCACAATACTTAGCATTCAAAGTCAACACTTCCACTAAGCCATCTCAGTCCCCAAAAACAATCTTTGACAACTTTTAAGAGTAAGGATGA
Unaligned ( gi|15 ): CGGGAATTAAACCCCAAACCTTCCAAATGCGAAGTGGATGCTCTGACCGCTACGGTATCATTAAATTTAAAGATTAATGGCATTAT
Unaligned ( gi|16 ): TACATACACAAAATTGAGTCTTTAGTCAATAAA
Alignments
lowQualScore : 33333 22 111 333333333333333333333 1111 6666666666666666666666666 8888888888888888888888888888 1
lowQualScore : 66666 7 11 8 66 1 666 666 1 44 1 2 2 4 1 333 4 4 1 777 44 777 444 99 5 66 22 777 1 777 4 888888888888888888888 0 44 1 0 77 44 666 66 1 11 0 22 0 777 888 5 2 4 5 0000 0 66 22 1 11 1 66 1 44 1 2222 5 44 77 3 7 6 6 0 0000000000000000000000000 2222222222222222222222222222 0
lowQualScore : ..... . .. . .. . ... ... . .. . . . . . ... . . . ... .. ... ... .. . .. .. ... . ... . ..................... . .. . . .. .. ... .. . .. . .. . ... ... . . . . .... . .. .. . .. . .. . .. . .... . .. .. . . . . . ......................... ............................ .
lowQualScore : 00000 3 77 9 11 2 999 333 0 77 0 1 4 0 2 999 0 0 2 000 77 000 555 55 4 11 99 888 1 888 4 666666666666666666666 9 88 0 1 22 66 888 11 9 99 1 00 7 888 000 3 9 4 4 1111 4 99 44 0 33 0 77 7 99 0 6666 7 99 77 7 8 7 7 8 6666666666666666666666666 2222222222222222222222222222 0
consensus : NNCAATTGTAAACGACAATAATAAG-AG-AAGGTATAAA-CTAAT-A--CTTAC--CTGTGNTCTAANGAC-ACACANGCGCCGCAGCANACCGC-ATCGTG-CNTCA-C-GCAGAACGTGTCCAGGA---TGTTC-C---CATGGTG-CAGCTG--ACATCTCTCCG--TGGGCNG---GGACG---TTGCT-TGCTGT-GT-CCTCG--GCC--GGGT-CTTCATCTCCGCCTNGTCCAGGATCTNGTGCGTTTTC--GTCTTGCC--AAATCTATTGTGATACTCNAGACATTTNNCACAGAAATATTCATCACA---GTCCACACA--GAAGTTANTCGC-CTCCACATTTTTCCCGTCCGCCGAGCAC--GGTGTACAAGAATAGTCGNAANACACGTCACANCCTCT-NTCCATNGANCNCGCAAAT-CCTCCCCCAGTCGCCATTTTGTAG-CGTTCTGATA-T-TTACC-CGC-TG----AA---T---GC-GACAGCCTAG---AGTA----TTCG-TA-------CTCAATACCAAGAAGA-GATTAT
Reference ( family-913 ) : NNCAATTGTAAACGACAATAATAAG-AG-AAGGTATAAAGTTAAT-A--CTTAC--CTGTGNTCTAANGAC-ACACANGCGCCGCAGCANACCGC-ATCGTG-CNTCA-C-GCAGAACGTGTCCAGGA---TGTTC-C---CATGGTG-CAGCTG--ACATCTCTCCG--TGGGCNG---GGACG---TTGCT-TGCTGT-GT-CCTCG--GCC--GGGT-CTTCATCTCCGCCTNGTCCAGGATCTNGTGCGTTTTC--GTCTTGCC--AAATCTATTGTGATACTCNAGACATTTNNCACAGAAATATTCATCACA---GTCCACACA--GAAGTTANTCGC-CTCCACATTTTTCCCGTCCGCCGAGCAC--GGTGTACAAGAATAGTCGNAANACACGTCACANCCTCT-NTCCATNGANCNCGCAAAT-CCTCCCCCAGTCGCCATTTTGTAG-CGTTCTGATA-T-TTACC-CNC-TG----AA---T---GC-GATAGCCTAG---AGTA----TTCG-TA-------CTCAATACCAAGAAGA-GATTAT
gi|1 : TATAAA-CAAAA-A--CTTAC--TTGTGATGTAAAGAA-ACGCACGTGCTGCAGCACACCTC-ATCATG-CTTTA-C-ACAGAATGTGTCCAGAA---TGTTT-C---CATGATG-CAGCTG--ACATCTCGCAG--TGGGTAG---TGACG---ATGTT-TGCTGT-GA-CCCC-----C--GGGC-TTTTATCCCCGCCTGGTCCAAGATCTGGTGCGTTTTC--ATCTTGCC--AAATCGATTGTGAAACTGTACACATTTGTCACAGAAATGGTCATCACA---ATCCACACA--GAAGTTAGTGGC-TTCAACATTCCTCCCCTCTGATGAGCAC--GGTGTACAACAATAGTCATAATACAAATCGCAGCCTTT-GTCAATGGACCTTACAAAT-CCTCCCCTAGTCGCCA--TTGTAG-TATACTGATACT-TTATTACGCATA----AAGTTT---ACTGACAACCTAGTTAAGTACTAGTTTA-TATATATCCCACAATACCAAGAAGA-AATTAT
gi|10 : taactcatacctgcgggataatgtagtaatgtcagatatgtttcccaatatattatacattaagtacatgtacaatatata-A--CTTAC--CTGTGATCCATAGCA-ATACAGGCACAGCAGCAGA-CGCAATTGTGTTGTC--C-ACAGAACATGT-CAAGT---TGTTTGT---TATGGTGACGGCTGC-ACATCTCTGTGTCTGGGGAGTCCGGAAG---TTTCC-TGATAT------TTGAAGC----AATACTT-------GTTTTATCCTGGAGTACATGTGTCTGC--ATCT--CCGTAAAGCGGTTATGTTGTTGTAGACATGTTTCACACAAGTATGCGTGACATTGGT---CGCA--GTAATT-CTCACATTTCACATATTTCTTCTCCACGGAACAA--GGTGTACacttctatttttacttcttggta
gi|14 : TTAC--CTGTGGT-TAATAGCGATACACGCGGCGCAATAAACGGC-ATCATG--GTCATT-ACAAAACATGTCCAGGACCTTGTTG-T---TGTGGT--CA--TG--AC
gi|2 : gTATAAA---AGA-A--CCTAC--TTGTGGAATAATGAC-ACACATGTAACGCAGCACACGGC-ATCATG-CCGGA-C-GCAGAATGTGTCCAGGA---TGTTC-C---CATGATG-CAGCTG--ACATTTCTCCG--TGGGCTG---TGAAG---TTGTT-TGCTGT-GGGCCTCG--AT------T-CTTCATCTCCTCCTGGTCCAGGATCGTGTGTGTTTTC--AATTTGCC--AATTCTATGGTTATACTTGACACATTTAACACAGAAATATTCCTCACA---CTCCACACA--GAAGTTATTCGC-CTCCACATTTTTTCCATCTGCTGTGCAC--AATGCACACGAATAGTCAAAATATTCGTCACAACCTCC-TTCCGAAAAGTGTCCAAAT-CCTCCCCCAGACGTCATTTTGAAG---------TA-T-T-----CGT-TG---------T---GA-AACAGCCTAG---CTTA----ATCG-----------TTAATACCAAGAAGA-GA
gi|3 : ggaatgtttactaatatattaataaaactgatgtgctattatCAATTGTAAACGACAATAATAAA-AGTAAGGTATAAAGTTAATCA--CGTAC--GTGTGCTCCAAGGAC-ACGCAAGTACTACAGCATACCGC-ATCATG-TATCA-C-ACAGAATGTGTCCAGAA---TGTTC-C---CATGGTG-GAGTTG--GCATCTCTCTG--TGGGCAC---GGACG---ATACT-TGTTGT-GT-CCTCG--GCC--GGGT-CTTCATTTTAACCTTATCCAGGATTTGGTGCATTTTC--ATTTTGCT--CAACTTATTGTGATAATCCAGACATTTCTGACAGAAATATTCATCACA---GTCCACACA--TAAGCTAATAGC-CTCCACGTTTATCCCGGAAGACGAGCAC--GGTGTACAAGAATAATCGTAAAACACATCACAACCCTT-GTCTATTGAACGCGTAAAT-CCGCCTGCTGTCGCCATTTTATAA-CGTTCT-ATA-T-atttttatctattttagttccggttccttatcgccaatgcggccatcgacgatacataccggatctagag
gi|4 : atgcgatgcgaacgctctaccactatcccatcgctgcggtgttgattatttataaatgtggatatattgaccacacatacaggtattttaattgtattAGT-A--CCTAC--TTGTGAAATAATGAC-ACACATGTACCGCAGCAAACCGC-ATCATG-CCGAA-C-GCAGAATGTGTCCAGGA---TGTTC-C---CATGGTG-CAGCTG--GCATTTCTCGG--TTGGATG---GGAAG---TTGTT-TGCTGT-G------G--GCCCCGGGT-CTTCATCCCCGCCTGGTCTAGGATCGTGTGTGTTTTC--GTCTTGCC--AAATGTATGGTAATGCTTGACACAATTAAAACAGAAATATTCCTCACA---CTCCACACA--GAAGTTACTCGC-CTCCACATTTTTACCTTCTGCTGAGCAA--GGTGTACAAGAATAGTCGAAATATTCGTCACATTCTCTATTCCA-AGATCTTCCAAAT-CCTCCCCCAGTCGCCATTTTGAAG-CGTTCTAGTA-T-TTACC-CTT-TGTAAAGA---T---AT-GATAGCCTAG---AGTA----TTCG-----------TCAATACCAAGAAGA-GATTAT
gi|5 : aaaCAATTGTAAACGACAATAATGA-----AAGGTATAAAGTTAATCA--CGTAC--ATGTGCTCCAAGGAC-ACGCAAGTACTACAGCATACCGC-ATCATG-TATCA-C-ACAGAATGTATCCAGAA---TGTTC-C---TATGGTG-GAGTTG--ACATCTCTCTG--TGGGCAG---GGACG---ATACT-TGTTGT-GT-CCTCG--GCC--GGGT-CTTCATTTTATCCTTATCCAGGATTTGGTGCAGTTTC--ATTTTGCC--GAACTTATTGTGATAATCCAGACATTTCTGACAGAAATATTCATCGCA---GTCCACGCA--TAAGCTAATAGC-CTCCACATTTTTCCCGATGGACGAGCAC--GGTGTACAAGAATAATCATAAAACACATCAGAACCCTT-GTCTATTGAACGCGTAAAT-CCTCCCCAAGTCGCCATTTTGTAA-CGTTCTAATA-T-TTA---CAC-TA----CG---TTTAGC-GATAACCTA-------A----TTAGCTA-------CCCAATACGCGGAAAACGATTATaaatctacttctagtttcgcttcccggtaaggagagaagcgttcgacaactcagaccggatctagg
gi|6 : taTAATAAGTAG-A---TCTAGATCTAAT-GTGCTTACACTTGTGAAACAAGGAG-ACACACATGTCACAG---ACCTG-ATCATG-TTTCA-C-ACAGAATTTGTCCAGAA---TAT-A-C---CATAATG-CAGCTC--ACATCTCTCCG--TGGGTTG---GAACG---TCGCC-TGCGAT-GA-CCC-----CC--TGAA-CATCATTGCTGTCTCGTC----ATC----------TC--ATCTTGCC--AAATCTATTATGATCTTTCAAACATCTGACACACAAATATTCATCAAA---GTCCACACA--AAACTTTATAGC-CTCCACATTTTGCCCATCCATGGAGCAC--GTGGTACAAGAATAATCATTGAACACGTCTGATCCTTT-ATCAATAGAACCCGCCAAA-CCTCCCCATGTCGCCATTGTTTGGCCATACGGGTA-TGTTACC-TGC-TG----AA---
gi|8 : taatgtggatatgtcattgttatatgtT-A--CTTAC--CTGTGTCCTATCGCT-ATACAAACTCCACAGCAGACGAC-ATCGTG-AGTGC-C-GCAGTACATATCCATCA---CTTTA-CAAGCGTGG-G-T-GCTG---CATATGTCGG--TGGGCAG---GTAAG---TTGGT-TTCTGCAGT-CC-----ACT--GGATAC--CATGTCTGCTTTATCAACTATTTTGTGTCCTTTC--GTTATTCC--AAGTTTATTATGAAACACAAGACATTTATCACAAAAGTTCTGCTCACA---GTCGACACATCCACGTAA--CGC-CTCTTTATTGTGACCATCT-CTG-GCACAGGATGAACACGGAAAGTCAAACAAAATGTCTGATCCGCC-CTCCACCGATCTGG--AATACCTC-----GTCGCCATTaattaatgatagt
gi|9 : atccTGTAAA-CTAAT-A----TAC--CTGTGTTCTAACGCT-ACACAAACATGGCAGCACAGAAC-ACCGTG--ATCA-GAGCAGTATGTTTTTAGGA---TCTGC-C---CACTATG-T--CTGGAACATGGTTCTG--T----TG---AAACAAATTTACTCTTCTGT--T-TATC----CC--ATAT-TTTCACCTTATCCTCTCCCAAAACTTTATGGTTTTTCAAGGCTGG----AAAATTGTTGTGTAAATCTAGACATATTACACAATAAAAATCATCACA---GTTGGTACA--ATAATTAGTTGC-TTCAACAGTTTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CACATTCATTTACTGTTCATTATCACAGTCATGTGATGTGGCATGTACTATTGTTATTTACTGTTGTATGGTGTTTAGGGTCGCTTTCAAGAATTTTTCAGTCATATCGTGACAGTGTCTACTTGAGACAGTATTCTGAGCACTGTCACACTGGAGTATCATGCCGCAGACACATGGTATGATACCCAACCCAGTCACATTATACTGACACCGGGCCAACCAGACCTAGAATGCTTAGCGTCAAGCGAGGAAGCTTCTAGTACCATTTTTAAAGTCTTTTGTATGACCCGGCCGAGGATCGAACCCACGACCTTTCACATGCAAGGCGGACGCTCTACCACTAGACCACGCCGCGGTC
Unaligned ( gi|11 ): TCAATCTAATCGTGGCAGTATTCTGAGCGCTGCTAACATAAAAATGCTGGGCGCCAATCGACGAAGACTCTAGTACCATTTGTGGTATAACCAGGCCGGAGATTGAGCCCACAACCTTCCGCTTGCGAATGTGGATGCTCTAAGACATGCCCACCGTTGCGGTTTCATAATGATTAAGTATAAAGAATTCATGAATATCATTAAGTGCTAAGCAATTAGAATAAA
Unaligned ( gi|12 ): ATGTTTAGCATCGTTTTCACGAGAAGTTTATATTCCCATTTTTCAAGTATTTGGTATGACGCGGCCGGGGAACGAACCCAAAACCATTTAAATGCGAGTCAGGTGTTCTACCACTAAGTCACAACTGCGGTTAGTCAGAGTATGATACCTAAGTTTTCACTTTGTAAATAAACTGAAGTGATGAGGTGCTTC
Unaligned ( gi|13 ): CATGATTCCTATACTAGACCAATTCCAGGTATGCATAGAGACAAGACAGTAGGCTTAAAGTACCATTTTCAAACCTTTGGTACAACACTGTCATGAAACTCACAATACTTAGCATTCAAAGTCAACACTTCCACTAAGCCATCTCAGTCCCCAAAAACAATCTTTGACAACTTTTAAGAGTAAGGATGA
Unaligned ( gi|15 ): CGGGAATTAAACCCCAAACCTTCCAAATGCGAAGTGGATGCTCTGACCGCTACGGTATCATTAAATTTAAAGATTAATGGCATTAT
Unaligned ( gi|16 ): TACATACACAAAATTGAGTCTTTAGTCAATAAA