lowQualScore : 11111111111111111111111111111
lowQualScore : 1 2222 1 22222 333333 111 1 22222222 11 11 111 11111 33333333333333333333333333333333333333 111111111 11111111111111 4444444444444444444 55555555555555 555 1 111 11 11 111 00000000000000000000000000000 1 33333333333 1111 1 1
lowQualScore : 4 0 3 4 8888 0 3 4 5 4 4 3 11111 4 555555 99 66 888 88 5 4 3 8 0 4 3 66666666 44 33 66 9 111 6 1 2 6 88888 77 55555555555555555555555555555555555555 888888888 3 777 88888888888888 0 3333333333333333333 888 3 00000000000000 666 000 1 2 444 2 55555 4 2 4 33 2 555 444 2 99 33 2 33 2 555 2 11111111111111111111111111111 4 2 3 2 1 1 3 1 33333333333 1 7 1 44 1 6666 1 5 22 1 2 7
lowQualScore : . . . . .... . . . . . . . ..... . ...... .. .. ... .. . . . . . . . ........ .. .. .. . ... . . . . ..... .. ...................................... ......... . ... .............. . ................... ... . .............. ... ... . . ... . ..... . . . .. . ... ... . .. .. . .. . ... . ............................. . . . . . . . . ........... . . . .. . .... . . .. . . .
lowQualScore : 0 5 0 0 3333 6 5 0 7 6 4 1 00000 5 777777 99 11 555 22 2 0 4 9 2 1 3 00000000 66 88 00 0 777 7 0 2 3 00000 77 44444444444444444444444444444444444444 333333333 0 777 11111111111111 1 8888888888888888888 777 0 77777777777777 444 999 5 5 111 4 99999 4 2 4 11 4 888 111 4 33 11 2 99 2 111 4 33333333333333333333333333333 4 2 2 1 7 8 8 9 33333333333 9 4 7 11 7 3333 7 8 55 2 0 0
consensus : NNTCNGTNAAGCGAACTGACCTCNA----CTGTCTTTATCAACNTGATAATGC-CCCTGCA-CATCGCGCACGGCGG---A-CGACTGCTTACC---NTCAGAC--AAACAACGTTCAAGTGATGGATTGGCC--CGCGTTGTCCCCAGACATGGCTCCTNTTGAGCATGTCTGGGATGAGCTCGGNCGGCGGGTCCGTG--CACGCG-TGCCTCCGCCAA--GAAACGTCAAANA--GNTACGCCACG--C--CAT--CGTTCATG---AG---TGNAAC------AACATT----C---TACAAGGTCGTATAGCTA-C-CATAGT--------------GTCGTCTATGAGGCGT---AGATGTCTAGCCNGTATTGCGAGTG-AGGAG-TC-----ATACACGCGGTA---TTAATTTGTGAATTTGACATGAA-GCACCG---ATG-G-----TATTCAGGAC-G-T-TG--TTAT-GT-G-CC---CA-TTTATTGCGATATATCAA--TGAAA-TT-TG-CACAG-A-T-TAT---G-T-NTT-TTTTA--ATTGTTATTG-T-G-TGTATGA-AATTTGAATAAATTTGA-A-TT----GTGTTAACACT-GTT-AAAATCATCATTGTACA--A-C---CTT-TGCG--TTTCTAA-ATCGGTTGAGTGT
Reference ( gi|2 ) : CGTCAGTGAAGAGAACTGACCTCTA----CTGTCTTTATAAACTTGATAATGC-CCTTACA-CATCGCACACGGCGG---C-CGACTGTTTATT---GTCATAC--AAACAACGTTCAAGTGATGGATTGGCC--AGCACTGTCCCAAGACACGACTCCTTTTGAACATGTCTGAGATGGATTCGAACGGCGGGTCCGTG--CACGCG-CGCATCCGCCAA--AACATGTCAGAGA--GATACGCCACG--T--CAT--CGTCCATG---AG---TGGGAC------AACATT----C---TACAAAGTCGTATAGCTA-T-CATAGT--------------GTCGTCTA-GAAGTGT---ATACCTCGAGTCAGTATTGCGAATGTAGGGGCTC-----ATACACGCGGTA---TT---TTGTGAATTTGACATTAA-GCACCG---ATG-G-----TATTCAGGAC-A-T-TG--TTAT-GT-T-CC---CA-TTTATTGCGATAAGTCAA--TGAAA-TG-TG-CACAG-T-T-TAT---T-T-CTT-TTTTAAAATTTTTTTTG-T-G-TGTACGA-AATTTGAATAAATTTGA-A-TG----GTTTTCACACT-GCT-AAAATCATCATTGTACA--A-C---GTT-TGTG--TTTCTTA-ATCGGATGAGTGT
gi|23 : TCAATAAAGCAAACTGACCCTGA----CTGTCTTTATCATATTGATAATGG-CAT-GCA-CGTCGCACACGTCGG---C-CGACTTCTCGCA---ATTCTAC--AAACACCGTTCAAGTGATAGATTGGCC--TTCATTGTTCCTAGA
gi|29 : tctTCTGTTAAGAGAACTGACCTCCGTTGTCTGTCTTTATCAACTTGATAATGC-CTATACA-CAACACGAACAGCAG---A-CAACTGCTTAT
gi|3 : aTCTA----CTAACATGATAA-CTTGAT---GC-CCCTGCA-CATTGCAATTGGAGG---A-TGACTGCTTACC---TTCAAAC--AAACAACATT---------GATTGGCC--TGTGTGATCCCCAGACATTGCTCCTATAGAGCATGTCTGAGA----------------GT--GTG--CCCGTT-TGCCTTTGCCAA--GAAATGTCAGAGA--ATTACACCATG--C--CAT--
gi|8 : acactcgatcgatttagaagtgcaaaggttgtacaacaacaatttttaacattgttaacagaatttatttaaatttcatatataacaatagcaacataagatgcacaatctgtgcaaattccattgatatgtcgcaataaatgggcaacatacattgttctggatatcatcggttcttcatgccaaattcacaaattaataccgtttgcatgatcccccactcataatactggctagacttctacacctcatagacaatactatggtagctacacagccttgtacattaaccatgtgttagttcctgttgccaatgccctgcatgaagtgccatttcccacatgctggtgaaaGTATCTATCAACATGATAATGC-ACCTGTA-CATCGCGTACGGCGA---A-CGACTGCTTA
gi|6 : tacacataaccggtttagaaacggaaatgttgtacaaagatgatgttaacacaataaaaaaaattcaagtttcttacatatcaaaaacgatacaaaatataacatcttttcaaatttcattgatatatcgcaataaatgggcacatggcgtcgtcccgaatacaatcggtgcttcatgtcaaatttacaaactagtaccgtgtgtataatcctaactcacaatacaggttagtcatctaaaacttataatcgacacgttggtagctatacgaccttgtatattagcgatgtgctagtatccgatgccatccatgaagcgccattgatttacttaccggtaTTTATTCACATGATAATGT-CCTTGCA-TATCGCGCACGGAAG---A-CGACTGCTTACC---TTCAGAC--AAACAACATTTTAGTGATGGCTTGact
gi|17 : acactgaaccgatataaaacgcaaaggttgcacaatggtaattttaacagtgttaactcagttcaaatttatgcagatttcatacacaacattaacacataatcagtgcaattttcataaatacaccataaatctttggtatattacaatgacctgaataccattggtgctccatgtcaaattcacaaattagtaccgcgtgttcttgcattacaaacttgatatctatgcttcataaacgacgctaaagaaacggtactatagtaactaaacgactatgtaccttaaatatatactagttgccgtgccagtgtttacatgctgatggaaAACATGATAATACACCTT-CA-TATCGCACATGGAGG---A-TGACTGCCTAcg
gi|4 : ttcctcacatttatggcttatgaatgatactatggtagctatacaaccttgtgcattaacgttgtgttagtttcatttgccataccattcgtgaggtgccattttccatgttctggcggaatctaccTGATAATGC-CCCTAGAATATCAAACATGGAGG---A-CGACTGCTTACC---TTTAGAC--AAACAACGTTCAAGTGATGGATTGGCCTGTGTATTCTCC--AGATACGGCTCCTTTTAAGCATGTCTGAGATGAGTTTGGTCAACAGGTCCATcct
gi|25 : tacaaaacattccatcattgttgttcacaaaatggcttcttttaacaatgtcctgaatactatcggtgttttgtgtcaaattcacaaattaatatctcatatatgatcccccacttgcaatacaggcttgacatctacacctcatatacaccactatggtggctatacaaccatgtacattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaatctgccaaggTTACA-CATAAC-CAAGTCAGAAACACGACTGCTTACCTAAATCAGAC--AAACATCGTTCAGGTGATGGATTGACC--GGCGTTATCCCCAGTTATGA----TCTTGAACGTcctttcttcataagtgcaacaacattccacaaggccatgtagctatcatagtgtgttccatgaggcatagatgtctagccagt
gi|24 : CA-CATCGCGCACGGCGG---A-CAACGGCTGACA---TTTAGAC--AAGCAATATTTAAGTGATGGATTGGCT--CGCGTTGTTCCCAGATATGGCTCCTATTGAGTATATACGGGAtgttt
gi|1 : atagCGG---A-CGACTGTTTACG---ATC-TAGTGAAGCACCGTTCAAGTGATGGAATGGCC--CGCGTTGTCCCCAGACATGGCTCTAGTTAAGCATGTCTGGGATGAGCTCGGGCGACGAGTCTTTG--CACGTG-TGACTCCGCCAA--GAAACGTTACAAA--GTTA--CTACC--C--CATGCCCTTCTTG---A----TG--------------------C---CACACGCTCGCATAGCTT-C-CATGGT--------------ATCGTTTA-caag
gi|19 : tacactcaaccgactacaaacgcaaagattgtatcagtgttaatacaactcaatcttttttaaatgtcatacacaacaataacaatattaaacgcataatctgtgcaaatttcattcatatatcgcaataaatgggcatataataaacgtcctgaataccatcggtgtttcgtgtcaaattcacaatactacgttattccccactcgcaatctttgcgtcataaacgacaatatgatggctatacgaccttgtacattaacgatgtgctaattcccgttgccatgccagtcatgaggcgccatttttacctgctggttagatctacagacatggtaatttgcctgcaAC--AAACAACGTTCAAGTGACGTATTGGTC--AGTGTGATCCCCAGATATCACTCTTATGGAGCATGTCTTGGATGAGCTCGGCCCGCGGTTCCGTGCACACACG-TGCCTCCGCCAA--GAAACGTCAAATA--AAAACGCCATG--T--CCT--CGTtgag
gi|34 : agC--AAACAACGTTCAAGTGACGTACTGGTC--CGTGTGGTCCCCAGACAtgattcgtgaataaataaacaaa
gi|22 : tttaggTATCCCCAGTAATGGCTCCTTTGGAGCATGTTTGTGATGAGCTCGGACGGCGGGACCGTG--CACGCGATACA-CCGTAAAGAAAAACGTCAAATA--TTTAGGCCACA--C--CCC--CGCTCATG---AG---TGGAAC------AACATT----C---AACAAAGTTGTATAGCTA-C-CGTAGT--------------GT
gi|38 : TGTTCCCAGACATGCCTTCAATTGAGCATGTCTGGGATGa
gi|4 : TCCACCAG--CACAT-TGAAAAA--GGCACTTCATGAATGGCAT--GGTCAA-A---AGAACTAGCAC------ATCATT----AATGTACATGGTTGTATAGCCA-C-CATAGT--------------GGTGTATATGAGGTGT---AGATGTCAAGCCTGTATTGCAAGTG--GGGGATC-----ATATATGAGATA---TTAATTTGTGAATTTGACACAAA-ACACCG---ATA-G-----TATTCAGGAC-A-T-TG--TTAag
gi|17 : tacaaaacattccatcattgttgttcacaaaatggcttctttTCCGCCAG--AACATG---GAAAATGGCACCTCACG-----AAT--GGT--ATGGCAAA---TGAAACTAACACAACGTTAATGC----ACAAGGTTGTATAGCTA-C-CATAGT--------------ATCATTCA-TAAGatctgccaaggtgataatgcccctagaatatcaaacatggaggacgactgcttacctttagacaaacaacgttcaagtgatggattggcctgtgtattctccagatacggctccttttaagcatgtctgagatgagtttggtcaacaggtccatcctttcttcataagtgcaacaacattccacaaggccatgtagctatcatagtgtgttccatgaggcatagatgtctagccagt
gi|4 : ttcctcacatttatggTTCATA---AG---TGCAAC------AACATT----C---CACAAGGCCATGTAGCTA-T-CATAGT--------------GTGTTCCATGAGGCAT---AGATGTCTAGCCAGTatctaccaacatgataatacaccttcatatcgcacatggaggatgactgcctacct
gi|7 : tacaaaacattccatcattgttgttcacaaaatggcttcttttaacaatgtcctgaatactatcggtgttttgtgtcaaattcacaaattaatatctcatatatgatcccccacttgcaatacaggcttgacatctacacctcatatacaccactatggtggctatacaaccatgtacattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaatctgccaaggtgataatgcccctagaatatcaaacatggaggacgactgcttacctttagacaaacaacgttcaagtgatggattggcctgtgtattctccagatacggctccttttaagcatgtctgagatgagtttggtcaacaggtccatcctttcCATA---AG---TGCAAC------AACATT----C---CACAAGGCCATGTAGCTA-T-CATAGT--------------GTGTTCCATGAGGCAT---AGATGTCTAGCCAGTA
gi|3 : acttaaccaatttagaaatgcaaagtcctgtacaatgatgattttaccacaattccatacacaacaataacattataaaacccataacctgtgcaaatttcattgatacatcacaacagagggacacatatcattgtcatgaatatcatcagtgcttcatgtcacattcacatgttaataccgcgtgtattgtatgatatctcgctcgcaatactggctagacatatatgcctcatggatgacactatgtactagctagacatctatgcctcatggatgacactatgtactggctagacatnnnnnnnnnncctcatggatgacactatg---TACAAGGCTGTGTAGCTA-C-CATAGT--------------ATTGTCTATGAGGTGT---AGAAGTCTAGCCAGTATTATGAGTG--GGGGATC-----ATGCAAACGGTA---TTAATTTGTGAATTTGGCATGAA-GAACCG---ATG-A-----TATCCAGAAC-A-A-TG--T-AT-GT-TGCC---CA-TTTATTGCGACATATCAA--TGGAA-TT-TG-CACAG-A-T-TGT---G-C-ATC-TT---ATGTTGCTATTGTT-A-TATATGA-AATTTAAATAAATTC-----TG-------TTAACAAT-GTTAAAAATTGTTGTTGTACA--A-C---CTT-TGCA--CTTCTAA-ATCGATCGAGTGTa
gi|8 : ---TACAAGGTCGTATAGCTA-C-CAACGT--------------GTCGATTA-TAAGTTTTAGATGACT--AACCTGTATTGTGAGT-TAGGA--TT-----ATACACACGGTA---CTAGTTTGTAAATTTGACATGAA-GCACCG---ATT-G-----TATTCGGGAC-G-A-CG--CCAT-GT-G-CC---CA-TTTATTGCGATATATCAA--TGAAA-TT-TG-AAAAGATGT-TAT---A-T-TTT-GT-----ATCGTTTTTGAT-A-TGTAAGA-AACTTGAAT---TT-------------TTTTTATTGT-GTT-AACATCATCTTTGTACA--A-C---ATT-TCCG--TTTCTAA-ACCGGTTATGTGTcattaaccatgtgttagttcctgttgccaatgccctgcatgaagtgccatttcccacatgctggtgaaatctactaacatgataacttgatgcccctgcacattgcaattggaggatgactgcttaccttcaaacaaacaacattgattggcctgtgtgatccccagacattgctcctatagagcatgtctgagagtgtgcccgtttgcctttgccaagaaatgtcagagaattacaccatgccat
gi|1 : t---TACAAGGTCGTATAGCCA-T-CATATT--------------GTCGTTTATGACG------------CAA---AG-ATTGCGAGTG--GGGA--------ATA-ACGTAGTA---TT-----GTGAATTTGACACGAA-ACACCG---ATG-G-----TATTCAGGAC-GTT-TA--TTAT-AT-G-CC---CA-TTTATTGCGATATATGAA--TGAAA-TT-TG-CACAG-A-T-TAT--------GC-GTTTAATATTGTTATTGTT-G-TGTATGA-CATTTAAAAAAGATTGA-G-TT----GTATTAACACT-GAT-ACAATC-T--TTG--------C---GTT-TG---------TA-GTCGGTTGAGTGTtattagcgatgtgctagtatccgatgccatccatgaagcgccattgatttacttaccggtagtatctatcaacatgataatgcacctgtacatcgcgtacggcgaacgactgcttaact
gi|6 : t---TACATAGTCGTTTAGTTA-C-TATAGTACCGTTTCTTTAGCGTCGTTTATGAAGCAT---AGATATCAAGT-----TTGT-AATGCAAGA-----------ACACGCGGTA---CTAATTTGTGAATTTGACATGGA-GCACCA---ATG-G-----TATTCAGGTC-A-T-TG--TAAT-AT-A-CCAAAGA-TTTATGGTG-TA--TTTA--TGAAA-AT-TG-CACTG-A-T-TAT---G-T-GTT-------AATGT-------T-G-TGTATGA-AATCTGCATAAATTTGA-A-CT----GAGTTAACACT-GTT-AAAATTACCATTGTGCA--A-C---CTT-TGCG--TT--TTATATCGGTTCAGTGTcattaacgatgtgctaattcccgttgccatgccagtcatgaggcgccatttttacctgctggttagatctacagacatggtaatttgcctgcacggacgactgtttacgatctagtgaagcaccgttcaagtgatggaatggcccgcgttgtccccagacatggctctagttaagcatgtctgggatgagctcgggcgacgagtctttgcacgtgtgactccgccaagaaacgttacaaagttactaccccatgcccttcttgatgccacacgctcgcatagcttccatggtatcgtttatgag
gi|9 : CGTATATTTA-C-AAAAAT--------------TTCGTTT-----GTG----ATGTCT--AGCCTGTATTGCAAGTTTTGGA--CC-----ATGTACGTGGTAGTATT---TTGTGAATTTGACATGAA-GCCCCG---ATG-A-----TATTCAGGAC-G-T-TGATTTGT-GT-T------CA-TTTATTACGGTAAATCAT--TAAAA----------AG-G-T-TATGCGT-T-TTT-TTTTGTAATTGT------T-G-TGTAGGT-AATTTAAATAAATTTGAGA-TA----------ATACT-GCT-----TTATTGTTGTA-A--A-CTATGTTGTGTG--Tccttaaatatatactagttgccgtgccagtgtttacatgctgatggaatttattcacatgataatgtccttgcatatcgcgcacggaagacgactgcttaccttcagacaaacaacattttagtgatggcttgcg
gi|7 : aGTCTAGCTAGTACATAGT--------------GTCATCCATGAGGCAT---ATATGTCTAGCCAGTATTGCGAGCG-AGATA-TCATACAATACACGCGGTA---TTAACATGTGAATGTGACATGAA-GCACTG---ATG-A-----TATTCATGAC-A-A-TG--ATAT-GTGT-CC---C--TCTGTTGTGATGTATCAA--TGAAA-TT-TG-CACAG-G-T-TAT---G-G-GTT-TTATAA---TGTTATTGTT-G-TGTATGG-AATT--------------G-TG----G-------------T-AAAATCATCATTGTACAGGA-C----TT-TGCA--TTTCTAA-ATTGGTTAAGTagtaagtaagt
gi|5 : AGT--------------GTCATCTATGAGGCGT---GGATGTCTATCTTATATTGCGAATGGAGTAGC-------ATACACGCGGTA---TTAATTTGTGAATTTGGCATGAA-CCACCG---ATG-G-----TATTCATGAC-G-T-TA--TTGT-AT-A-CC---TA-TTTATTGCGACACATCAA--TGACA-TT-TG-atctatgcctcatggatgacactatgtactggctagacatnnnnnnnnnncctcatggatgacactatgtactggctagacatctatgcctcatggaacacactatgatagctacatggccttgtggaatgttgttgcacttatga
gi|35 : taaaagatagcatcccaatatgaacatctattcaaccgatttaggaacgcaaagattgtataatattgattttgatagtgttaacacaattaagatttattaaaatttcacactgaacaagattaccatcagcgtttcatgtcaacttcacaaaataacaacaataacaatatcaaacgcataagctgtgtaaatgtcatcgatgtgtcgcaataaataggcatacaacaaatgtcattgatgtgtcgnnnnnnnnnnataaataggcatacaaAGCCTGTATTGCGAGTG-AGGA--TC-----ATGCACGTGGTA---
gi|11 : GTATTGCGAGTG--GGAGATC-----ATGCACGTGGCA---TTAATTTGTGAATTTGATATGAA-ACACCG---ATG-G-----TATTCAGGAC-G-T-TG--TTAT-GT-G-CC---TA-TTTAGTGCGATATATCAA--TAAAA-CT-AG-CACAG-G-T-TAT--------GT-GTTTGATATTGTTATTGTT-A-TGTATGG-AATTTGAATAAATTTGA-A-TT----GTGTAAACACT-GTT-AAAATTATCATTGTACA--A------TT-TGTaaaaacctacgtct
gi|10 : cacattatcgatttaGTGGAGGATT-----ATACAAGCGGTA---TTAATTTGCGAGTTTGACATGAA-GAGCCA---ATG-G-----TATTCAGGAC-A-T-TG--TTAT-GT-G-CC---CA-TTTATGGCGATTTATCAA--TGAAA-TT-TG-TACAG-A-T-TGT---G-T--GT-TTATATGGTTATTGTTG-T-G-TATA--A-AATTCTAATTAATTCTA-T-TT----GTGTTAACACT-GTT-AAAATCATCATTGTACA--A-C---CTT-TGCG--TTTCTTG-ATCCGTTTAGTGacggcaaacatctacgc
gi|13 : g---TTGTGATTTTGACATGAA-G-ACCG---GTG-A-----TATTCAGGAGGA-TGTG--TTGT-GT----C---CA-TTTATTGCGATAA-----------A-TT-TG-CACGG-A-T-TAT---G-C-GTT-TTATA---TTGTTATTG-TTG-TGCATAA-AATTTGAATACATTTAA-A-TG----GTGTTAACACT-GTT-GAAATCAACATTGTACA--A-C---CTC-TGCG--TTTCTAA-ATCGGTCGAGTGttgacagctatgccttatgtacaaca
gi|5 : TGACATTTA--CACAGCTTATGCG-----T-TT---GAT-A-T-TG--TTATTGT-T-GT---TA-TTT--TGTGA--AGTTGACATGAAA-CGCTG--ATGG-T-----------------------AATCTTGTTCA---G-TGT--GA-AATTTTAATAAATCTTA-A-TT----GTGTTAACACT-ATC-AAAATCAATATTATACA--A-T---CTT-TGCG--TTCCTAA-ATCGGTTGAAT
gi|15 : taaaagatagcatcccaatatgaacatctTAATGCACCG---ATG-GGATGGTATTCAGGAC-A-T-TG--TTAC-GC-G-CC---CA-TTTATTGTGATATGTCAA--TGAAATTT-TG-AAAAG-T-TATAC---G-T-TTTATATTGCAATTGT------T-A-TGTATGAGAATTT-AATAAATTTAA-ACTG--------------T-GTT-AAAATCATCATTGTATA--A-C---CTT-TACG--TTTCTAA-ATCGGTTGAGTGTtcgatgtgtcgcaataaataggcatacaacaaatgtcattgatgtgtcgnnnnnnnnnnataaataggcatacaacaaatgtcattgatgtgtcgcaataaataggtatacaataacgtcatgaataccatcggtggttcatgccaaattcacaaattaataccgcgtgtatgctactccattcgcaatataagatagacatccacgcctcatagatgacact
gi|21 : AA-GCACCG---ATG-G-----TATTCAGAACTA-TGTG--TTGT-G----CC---CATTTTTTTGCGATATATCAA--TGGAA-TT-TGTTACAT-A-T-TAT---G-C-GAT-TT---GCATTGTTATCGTT-G-TGTCTGA-AAT----ATGTATT--------------------------T-AAAATCATCATTGTACA--A-C---ATT-TGCG--Tt
gi|16 : tcaatgttcgaattatacttA-GCACCA---ATG-G-----TATTCAGGAC-A-T-TG--TTGT-GT-G-TC---CT-TTTATTGTGATATATCAA--TGAAA-TA-TC-CACAG-A-G-TAT---TAT-GTT-GTT----ATTAT------T-G-TGCATGA-ATATTGAATAAATTTAA-A-TT----GTGTTAACACT-GTT-AAAATCCTCATTGTATA--A-C---CTA-TGCG--TTTCTAA-GTCGGTTGAGTGT
gi|14 : -GCAACG---CTG-A-----TATTCAGGAG-G-T--G--TTTT-GT-G-CC---CA-TTTATTGCGGTATTTCAA--AGACA-TT-TG-CACAG-A-T-TATAA-T-TGCGT-TTC--ATATTGTTATTG-TTG-TGTATGA-AATTTAAATAAATTTGA-A-TC----GTGTCAACACT-GTT-AAAATTATCATTGTACA--ACC---TTT-TGTG--TTTCTTA-ACCAGTTTAGTGTa
gi|20 : CG---GTG-G-----TATTCAGGAC-G-C-TC--TTAT-GT-G-CC---TA-TTTATTGCGATAAAACAA--TGAAA-TT-TA-CACA------TAT---TGTGCAT-TTT--ATATTCTTATTATT-G-CGTATGA-AATTTAAATGAA-TTGA-A-TT----GTGTTTAT-----------ATCACCATTGCACA--T-C---CTT-TGTG--TATCTAA-ATCGGTTGAATG
gi|18 : TCAAGAC-A-T-T-----AT-GT-G-CC---CA-TTTATTGCGATATATCAA--T-AAT-TG-TG-C---G-T-T-T----------TT-TGTTA---------TTG-C-GGTGTA--------TGAATATATTTCC-A-TT----GCGTGAACACT-GTT-TAAATCATCATTGTACA--A-C---ATT-TGCGATTTTATAA-AGCGGTTGAATGT
gi|12 : A--TGAAA-CT-TA-CACAT-A-T-TAT---G-T-ATT-TTATA---TTATTATTG-T-G-TGTA--A-AATTAAAACAAAAATGA-A-TT----GTATTAACACT-GTC-AAAATCATCATTGTACA--A-C---CTG-TGAA--TTTCTAA-ATTGGTTAAGtaaatccacaaataaatacttctgcca
gi|28 : -T-G-TGTATGA-AAATTGAATGAACTTGATA-TGAAATGTGTTAACACT-ATT-AAAATTATCATTGTACA--A-CAT-GTT-TGCG--TTTCTAA-ATCGGTTGAGTagcgcactgaggatgacttatatgttacttacatctcattatatgttaccaatatctcattatatgtta
gi|33 : aGA-AATTTGAATAAATTTGA-A-TT----GTGTTAACACT---T-AAAATCACC
gi|26 : ttagaaacgaATTTGAATAAATTTGA-A-TT----GTGTTAACACTAGTT-AA--TCATCCTTGTACA--A-C---CTT-TGCG--TTTCTAA-A--AGTTGAATGT
gi|30 : atTTTGAATAAATTTGA-A-TT----GTTTTAACATT-GTT-AAATTCAGCACTGTGCAG-A-C---A-T-TGCA--TTTCTAA-ATCGCTTAAGTGTacaattaaaaattattcaattt
gi|27 : tT-AAAATCTTCATTATCCA--A-C---CAT-TACT--TTTCTAA-ATCGGTTGA
gi|36 : aatgaaatttgtacatatcatgcgttttatattgcatttgttgtgtataaaatt-AAAATCCTCATTGTACA--A-C---CAT-AAAG--TTTCTCA-ATCGGTTGGGTG
gi|37 : tgAAATCGTCATTGTACA--A-C---ATT-TGCG--TTTC-AA-ACCGGTCAAGTGT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|31 ): TTAGATGTACGGCACATGGTAATTTACATATTCGGACGACCGTTTCGCGACCGTAAAGCAC
Unaligned ( gi|32 ): TAACACAATTCAATTTCTTTCAAATGTCATACACCACCACAACAACAGACGCACACTCTGT
Alignments
lowQualScore : 2222 11111 11 111 111111 1111 11111111111111 222222 33333333 111
lowQualScore : 1 1 6 1 8888 1 11111 1 4 0 2 88888 4 3 1 3 1 11 8 1 99 1 5 1 77 1 77 2 0 000 6 999999 4444 1 33 33333333333333 55555 1 55 888 111111 88888 55555 0 2 22 2 333 2 0 2 4444 33333333 888 1 0 1 0 0 1 3333 1 1 1 1 22 1 22
lowQualScore : . . . . .... . ..... . . . . ..... . . . . . .. . . .. . . . .. . .. . . ... . ...... .... . .. .............. ..... . .. ... ...... ..... ..... . . .. . ... . . . .... ........ ... . . . . . . .... . . . . .. . ..
lowQualScore : 0 0 7 0 3333 0 11111 9 0 5 5 99999 0 7 0 3 0 00 0 0 22 0 7 0 33 6 99 5 1 000 6 222222 2222 9 77 88888888888888 99999 1 55 888 888888 33333 33333 2 1 99 1 777 1 1 0 2222 55555555 999 9 6 7 2 3 7 5555 7 7 7 7 33 7 44
consensus : NNTCAGTNAAGAGAACTGACCTCNA----CTGTCTCTATCAACATGATAA-----TGCCCCT-GCACATCGCGCACGGCGGACGACTGCTTACCT---TC-AGACAAACAACGTTCAAGTGATGGATTGGCCCGCGTTGTCCCCAGACATGGCTCCTNTTGAGCATGTCTGGGATGAGCTCGGNCGGCGGGTCCGTG--CACGCG-TGCCTCCGCCAAGAAA--CGTCAAANA-GNTACGCCACGCCAT--CGTTCATG---AGTGNAAC------AACATT----CTACAAGGTCGTATAGCTAC--CATAGT--------------GTCGTCCATGAGG-----CGTAGATGTCTAGCCN-GTATTGCGAGTG-AGGAG-T--CATAC-----ACGCGGTATTAATTTGTGAATTTGACATGAAGCACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCC---CA-TTTATTGCGATATATCAATGAAATTTG-CACAGATTATG--CGTTTTNT--A-ATTGTTATTG-T-G-TGTATGA-AATTTGAATAAATTTGA-AT----TGTGT-TAACACT-GTT-AAAATCATCATTGTACA-AC--C-TTTGCG--TTTCTAAATCGGTTGAGTGT
Reference ( family-88 ) : NNTCNGTNAAGCGAACTGACCTCNA----CTGTCTTTATCAACNTGATAA-----TGCCCCT-GCACATCGCGCACGGCGGACGACTGCTTACCN---TC-AGACAAACAACGTTCAAGTGATGGATTGGCCCGCGTTGTCCCCAGACATGGCTCCTNTTGAGCATGTCTGGGATGAGCTCGGNCGGCGGGTCCGTG--CACGCG-TGCCTCCGCCAAGAAA--CGTCAAANA-GNTACGCCACGCCAT--CGTTCATG---AGTGNAAC------AACATT----CTACAAGGTCGTATAGCTAC--CATAGT--------------GTCGTCTATGAGG-----CGTAGATGTCTAGCCN-GTATTGCGAGTG-AGGAG-T--CATAC-----ACGCGGTATTAATTTGTGAATTTGACATGAAGCACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCC---CA-TTTATTGCGATATATCAATGAAATTTG-CACAGATTATG--TNTTTTTT--A-ATTGTTATTG-T-G-TGTATGA-AATTTGAATAAATTTGA-AT----TGTGT-TAACACT-GTT-AAAATCATCATTGTACA-AC--C-TTTGCG--TTTCTAAATCGGTTGAGTGT
gi|1 : TACAAGGTCGTATAGCCAT--CATATT--------------GTCGTTTATGACG-----CAAAGAT--------------TGCGAGTG-GGGA------ATA------ACGTAGTATT-----GTGAATTTGACACGAAACACCGATG-----GTATTCAGGACGTTTATT--ATA-TGCC---CA-TTTATTGCGATATATGAATGAAATTTG-CACAGATTATG--CGTTTAAT--A--TTGTTATTG-TTG-TGTATGA-CATTTAAAAAAGATTGA-GT----TGTAT-TAACACT-G---------------ATACA-AT--C-TTTGCG--TTTGT-AGTCGGTTGAGTGT
gi|1 : tACATGGTAA-----TTTGCCT-GCAC------------GGACGACTGTTTACGA---TCTAGTGAAGCACCGTTCAAGTGATGGAATGGCCCGCGTTGTCCCCAGACATGGCTCTAGTTAAGCATGTCTGGGATGAGCTCGGGCGACGAGTCTTTG--CACGTG-TGACTCCGCCAAGAAA--CGTTACAAA-GTTA--CTACCCCATGCCCTTCTTG---A-TG--------------------CCACACGCTCGCATAGCTTC--CATGGT--------------ATCGTTTATGAGcattaacgatgtgctaattcccgttgccatgccagtcatgaggcgccatttttacctgctggttagatctacagacatggtaatttgcctgcacggacgactgtttacgatctagtgaagcaccgttcaagtgatggaatggcccgcgttgtccccagacatggctctagttaagcatgtctgggatgagctcgggcgacgagtctttgcacgtgtgactccgccaagaaacgttacaaagttactaccccatgcccttcttgatgccacacgctcgcatagcttccatggtatcgtttatgag
gi|10 : tacactcaaccgactacaaacgcaaagattgtatcagtgttaatacaactcaatcttttttaaatgtcatacacaacaataacaatattaaacgcataatctgtgcaaatttcattcatatatcgcaataaatgggcatataataaacgtcctgaataccatcggtgtttcgtgtcaaattcacaatactacgttattccccactcgcaatctttgcgtcataaacgacaatatgatggctatacgaccttgtacattaacgatgtgctaattcccgttgccatgccagtcatgaggcgccatttttacctgctggttagatctacagT--------------GTTGTACATAAGG-----CATAGCTGTCAAG--------TG-----G-AGGA--T--TATAC-----AAGCGGTATTAATTTGCGAGTTTGACATGAAGAGCCAATG-----GTATTCAGGACATT-GTT--ATG-TGCC---CA-TTTATGGCGATTTATCAATGAAATTTG-TACAGATTGTG--TGTTTAT-----ATGGTTATTGTT-G-TGTATAA-AATTCTAATTAATTCTA-TT----TGTGT-TAACACT-GTT-AAAATCATCATTGTACA-AC--C-TTTGCG--TTTCTTGATCCGTTTAGTG
gi|11 : gG-----CGTAGATGTTT-GCCGTGTATTGCGAGTG--GGAGAT--CATGC-----ACGTGGCATTAATTTGTGAATTTGATATGAAACACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCC---TA-TTTAGTGCGATATATCAATAAAACTAG-CACAGGTTATG--TGTTTGAT----ATTGTTATTGTT-A-TGTATGG-AATTTGAATAAATTTGA-AT----TGTGT-AAACACT-GTT-AAAATTATCATTGTACA-A-----TTTG-------TTAAATCGAT--AATGT
gi|12 : cATGAAACTTA-CACATATTATG--TATTTTAT--A--TTATTATTG-T-G-TGTA--A-AATTAAAACAAAAATGA-AT----TGTAT-TAACACT-GTC-AAAATCATCATTGTACA-AC--C-TGTGAA--TTTCTAAATTGGTTAAG
gi|13 : TTGTGATTTTGACATGAAG-ACCGGTG-----ATATTCAGGAGGAT-GTG--TTG-TGTC---CA-TTTATTGCGATA---------AATTTG-CACGGATTATG--CGTTTTAT--A--TTGTTATTG-TTG-TGCATAA-AATTTGAATACATTTAA-AT----GGTGT-TAACACT-GTT-GAAATCAACATTGTACA-AC--C-TCTGCG--TTTCTAAATCGGTCGAGTGagcgcactgaggatgacttatatgttacttacatctcattatatgttaccaatatctcattatatgtta
gi|14 : GCAACGCTG-----ATATTCAGGAGGT--GTT--TTG-TGCC---CA-TTTATTGCGGTATTTCAAAGACATTTG-CACAGATTATAATTGCGTTTC--ATATTGTTATTG-TTG-TGTATGA-AATTTAAATAAATTTGA-AT----CGTGT-CAACACT-GTT-AAAATTATCATTGTACA-AC--CTTTTGTG--TTTCTTAACCAGTTTAGTGT
gi|15 : ATAATGCACCGATGGGATGGTATTCAGGACATT-GTT--ACG-CGCC---CA-TTTATTGTGATATGTCAATGAAATTTT-GAAAAGTTATA--CGTTTTAT----ATTGCAATTGTT-A-TGTATGAGAATTT-AATAAATTTAA-AC----TG----------T-GTT-AAAATCATCATTGTATA-AC--C-TTTACG--TTTCTAAATCGGTTGAGTGT
gi|16 : AGCACCAATG-----GTATTCAGGACATT-GTT--GTG-TGTC---CT-TTTATTGTGATATATCAATGAAATATC-CACAGAGTAT---TAT---------GTTGTTATTA-TTG-TGCATGA-ATATTGAATAAATTTAA-AT----TGTGT-TAACACT-GTT-AAAATCCTCATTGTATA-AC--C-TATGCG--TTTCTAAGTCGGTTGAGTGT
gi|17 : TCCGCCAG--AA--CATGGAAAATGGCACCTCACGA-AT--GGT--ATGGCAAATGAAACTAACACAACGTTAATGC-ACAAGGTTGTATAGCTAC--CATAGT--------------ATCATTCATAAGC-----CATAAATGTa
gi|17 : ttcctcTCTACCAACATGATAA-----TACACCT-TCATATCGCACATGGAGGATGACTGCCTACCatctaccaacatgataatacaccttcatatcgcacatggaggatgactgcctacct
gi|18 : ttcctcacatttatggcttatgaatgatactatggtagctatacaaccttgtgcattaacgttgtgttagtttcatttgccataccattcgtgaggtgccattttccatgttctggcggaaTCAAGACATT------ATG-TGCC---CA-TTTATTGCGATATATCAAT-------------AATTGTG--CGTTTT-------TTGTTATTG-CGG-TGTA--------TGAATATATTTCC-AT----TGCGT-GAACACT-GTT-TAAATCATCATTGTACA-AC--A-TTTGCGATTTTATAAAGCGGTTGAATGTt
gi|19 : -AGACAAACAACGTTCAAGTGACGTATTGGTCAGTGTGATCCCCAGATATCACTCTTATGGAGCATGTCTTGGATGAGCTCGGCCCGCGGTTCCGTGCACACACG-TGCCTCCGCCAAGAAA--CGTCAAATA-AAAACGCCATGTCCT--CGTTGATT---CGTGAAtaaatccacaaataaatacttctgcca
gi|2 : TCAGTGAAGAGAACTGACCTCTA----CTGTCTTTATAAACTTGATAA-----TGCCCTT-ACACATCGCACACGGCGGCCGACTGTTTATTG---TC-ATACAAACAACGTTCAAGTGATGGATTGGCCAGCACTGTCCCAAGACACGACTCCTTTTGAACATGTCTGAGATGGATTCGAACGGCGGGTCCGTG--CACGCG-CGCATCCGCCAAAACA--TGTCAGAGA-GATACGCCACGTCAT--CGTCCATG---AGTGGGAC------AACATT----CTACAAAGTCGTATAGCTAT--CATAGT--------------GTCGTCTA-GAAG-----TGTATACCTCGAGTCA-GTATTGCGAATGTAGGGGCT--CATAC-----ACGCGGTAT---TTTGTGAATTTGACATTAAGCACCGATG-----GTATTCAGGACATT-GTT--ATG-TTCC---CA-TTTATTGCGATAAGTCAATGAAATGTG-CACAGTTTATT--TCTTTTTTAAA-ATTTTTTTTG-T-G-TGTACGA-AATTTGAATAAATTTGA-AT----GGTTT-TCACACT-GCT-AAAATCATCATTGTACA-AC--G-TTTGTG--TTTCTTAATCGGATGAGTGTtaaataaacaaa
gi|20 : cgCGGTG-----GTATTCAGGACGCT-CTT--ATG-TGCC---TA-TTTATTGCGATAAAACAATGAAATTTA-CACATATTGTG--CATTTTAT----ATTCTTATTATT-G-CGTATGA-AATTTAAATGAA-TTGA-AT----TGTGT-T-----T-AT-----ATCACCATTGCACA-TC--C-TTTGTG--TATCTAAATCGGTTGAATG
gi|21 : AAGCACCGATG-----GTATTCAGAACTAT-GTG--TTG-TGCC---CATTTTTTTGCGATATATCAATGGAATTTGTTACATATTATG--CGATTTGC----ATTGTTATCGTT-G-TGTCTGA-AATATGTAT------------------------------TT-AAAATCATCATTGTACA-AC--A-TTTGCG--
gi|22 : tcaatgttcgaattatacttTTATCCCCAGTAATGGCTCCTTTGGAGCATGTTTGTGATGAGCTCGGACGGCGGGACCGTG--CACGCGATACA-CCGTAAAGAAAAACGTCAAATA-TTTAGGCCACACCCC--CGCTCATG---AGTGGAAC------AACATT----CAACAAAGTTGTATAGCTAC--CGTAGT--------------GT
gi|23 : TCAATAAAGCAAACTGACCCTGA----CTGTCTTTATCATATTGATAA-----TGGCA-T-GCACGTCGCACACGTCGGCCGACTTCTCGCAA---TT-CTACAAACACCGTTCAAGTGATAGATTGGCCTTCATTGTTCCTAGA
gi|24 : tct-GCACATCGCGCACGGCGGACAACGGCTGACAT---TT-AGACAAGCAATATTTAAGTGATGGATTGGCTCGCGTTGTTCCCAGATATGGCTCCTATTGAGTATATACGGGACAAG
gi|25 : ataACGACTGCTTACCTAAATC-AGACAAACATCGTTCAGGTGATGGATTGACCGGCGTTATCCCCAGTTATGA----TCTTGAACGT
gi|26 : ttacacataaccaagtcagaaacTTTTT--A-ATTGT-------------------ATTTGAATAAATTTGA-AT----TGTGT-TAACACTAGTT---AATCATCCTTGTACA-AC--C-TTTGCG--TTTCTAAA--AGTTGAATGTtgttt
gi|27 : atAATGAAATTTG-TACATATCATG--CGTTTT------AT----ATTG-C----------------------ATTTG---T----TGTGTATAAAATT---T-AAAATCTTCATTATCCA-AC--C-ATTACT--TTTCTAAATCGGTTGAttattcaattt
gi|28 : -T-G-TGTATGA-AAATTGAATGAACTTGATATGAAATGTGT-TAACACT-ATT-AAAATTATCATTGTACA-ACATG-TTTGCG--TTTCTAAATCGGTTGAGT
gi|29 : aTCTGTTAAGAGAACTGACCTCCGTTGTCTGTCTTTATCAACTTGATAA-----TGCCTAT-ACACAACACGAACAGCAGACAACTGCTTA
gi|3 : aTACAAGGCTGTGTAGCTAC--CATAGT--------------ATTGTCTATGAGG-----TGTAGAAGTCTAGCCA-GTATTATGAGTG-GGGGA-T--CATGC-----AAACGGTATTAATTTGTGAATTTGGCATGAAGAACCGATG-----ATATCCAGAACAAT-G-T--ATGTTGCC---CA-TTTATTGCGACATATCAATGGAATTTG-CACAGATTGTG--CATCTTAT----GTTGCTATTGTT-A-TATATGA-AATTTAAATAAATTC-----------TGT-TAACAAT-GTTAAAAATTGTTGTTGTACA-AC--C-TTTGCA--CTTCTAAATCGATCGAGTGTt
gi|3 : TCTACTAACATGATAACTTGATGCCCCT-GCACATTGCAATTGGAGGATGACTGCTTACCT---TC-AAACAAACAACATT---------GATTGGCCTGTGTGATCCCCAGACATTGCTCCTATAGAGCATGTCTGAGA----------------GT--GTG--CCCGTT-TGCCTTTGCCAAGAAA--TGTCAGAGA-ATTACACCATGCCAT--cattaaccatgtgttagttcctgttgccaatgccctgcatgaagtgccatttcccacatgctggtgaaatctactaacatgataacttgatgcccctgcacattgcaattggaggatgactgcttaccttcaaacaaacaacattgattggcctgtgtgatccccagacattgctcctatagagcatgtctgagagtgtgcccgtttgcctttgccaagaaatgtcagagaattacaccatgccat
gi|30 : acactcgatcgatttagaagtgcaaaggttgtacaacaacaatttttaacattgttaacagaatttatttaaatttcatatataacaatagcaacataagatgcacaatctgtgcaaattccattgatatgtcgcaataaatgggcaacatacattgttctggatatcatcggttcttcatgccaaattcacaaattaataccgtttgcatgatcccccactcataatactggctagacttctacacctcatagacaatactatggtagctacacagccttgtacattaaccatgtgttagttcctgttgccaatgccctgcatgaagtgccatttcccacatgctggtgaaaTTTGAATAAATTTGA-AT----TGTTT-TAACATT-GTT-AAATTCAGCACTGTGCA-GA--C-ATTGCA--TTTCTAAATCGCTTAAGTGT
gi|32 : tACAGAGTGTG--CGTCT-------GTTGTTGTGG-T-GGTGTATGA-CATTTGAAAGAAATTGA-AT----TGTGT-TA
gi|33 : GA-AATTTGAATAAATTTGA-AT----TGTGT-TAACAC---TT-AAAATCACC
gi|34 : ttagaaacga---TT-AGGCAAACAACGTTCAAGTGACGTACTGGTCCGTGTGGTCCCCAGACA
gi|35 : tAGA-----CGTAGGTTTTTAGCCT-GTATTGCGAGTG-AGGA--T--CATGC-----ACGTGGTA
gi|36 : -AAAATCCTCATTGTACA-AC--C-ATAAAG--TTTCTCAATCGGTTGGGTG
gi|37 : tgAAATCGTCATTGTACA-AC--A-TTTGCG--TTTC-AAACCGGTCAAGTGT
gi|38 : tTGTTCCCAGACATGCCTTCAATTGAGCATGTCTGGGATGAG
gi|4 : TACATGGTTGTATAGCCAC--CATAGT--------------GGTGTATATGAGG-----TGTAGATGTCAAGCCT-GTATTGCAAGTG-GGGGA-T--CATAT-----ATGAGATATTAATTTGTGAATTTGACACAAAACACCGATA-----GTATTCAGGACATT-GTTAAAAG-AAGC---CA-TT--TTGTGA-ACAACAATGA
gi|4 : tacaaaacattccaCAAGGTGATAA-----TGCCCCTAGAATATCAAACATGGAGGACGACTGCTTACCT---TT-AGACAAACAACGTTCAAGTGATGGATTGGCCTGTGTATTCTCCAGATACGGCTCCTTTTAAGCATGTCTGAGATGAGTTTGGTCAACAGGTCCATcattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaatctgccaaggtgataatgcccctagaatatcaaacatggaggacgactgcttacctttagacaaacaacgttcaagtgatggattggcctgtgtattctccagatacggctccttttaagcatgtctgagatgagtttggtcaacaggtccatcctttcttcataagtgcaacaacattccacaaggccatgtagctatcatagtgtgttccatgaggcatagatgtctagccagt
gi|4 : tacaaaacattccatcattgttgttcacaaaatggcttcttttaacaatgtcctgaatactatcggtgttttgtgtcaaattcacaaattaatatctcatatatgatcccccacttgcaatacaggcttgacatctacacctcatatacaccactatggtggctatacaaccatgtacattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaatctgcGTCAA-CA-GGT---CCATCCTTT--C-TTCATA---AGTGCAAC------AACATT----CCACAAGGCCATGTAGCTAT--CATAGT--------------GTGTTCCATGAGG-----CATAGATGTCTAGCCA-GTcctttcttcataagtgcaacaacattccacaaggccatgtagctatcatagtgtgttccatgaggcatagatgtctagccagt
gi|5 : tacaaaacattccatcattgttgttcacaaaatggcttcttttaacaatgtcctgaatactatcggtgttttgtgtcaaattcacaaattaatatctcatatatgatcccccacttgcaatacaggcttgacatctacacctcatatacaccactatggtggctatacaaccatgtacattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaatctgccaaggtgataatgcccctagaatatcaaacatggaggacgactgcttacctttagacaaacaacgttcaagtgatggattggcctgtgtattctccagatacggctccttttaagcatgtctgagatgagtttgGTGTGA-AATTTTAATAAATCTTA-AT----TGTGT-TAACACT-ATC-AAAATCAATATTATACA-AT--C-TTTGCG--TTCCTAAATCGGTTGAAT
gi|5 : taaaagatagcatcccaatatgaacatctTGTTATTTTGTGAAGTTGACATGAAACGCTGATG-----GTAATCtgaacaagattaccatcagcgtttcatgtcaacttcacaaaataacaacaataacaatatcaaacgcataagctgtgtaaatgtcatcgatgtgtcgcaataaataggcatacaacaaatgtcattgatgtgtcgnnnnnnnnnnataaataggcatacaacaaatgtcattgatgtgtcgcaataaataggtatacaataacgtcatgaataccatcggtggttcatgccaaattcacaaattaataccgcgtgtatgctactccattcgcaatataagatagacatccacgcctcatagatgacact
gi|5 : taaaagatagcatcccaatatgaacatctattcaaccgatttaggaacgcaaagattgtataatattgattttgatagtgttaacacaattaagatttattaaaatttcacactgaacaaATTTATNNNNNNNNNNCGACACATCAATG-----ACATT--------T-GTT--GTA-TGCC---TA-TTTATTGCGACACATCGATGACATTTA-CACAGCTTATG--CGTTTGAT----ATTGTTATTG-T-acaataacaatatcaaacgcataagctgtgtaaatgtcatcgatgtgtcgcaataaataggcatacaacaaatgtcattgatgtgtcgnnnnnnnnnnataaataggcatacaacaaatgtcattgatgtgtcgcaataaataggtatacaataacgtcatgaataccatcggtggttcatgccaaattcacaaattaataccgcgtgtatgctactccattcgcaatataagatagacatccacgcctcatagatgacact
gi|5 : taaaagatagcatcccaatatgaacatctattcaaccgatttaggaacgcaaagattgtataatattgattttgatagtgttaacacaattaagatttattaaaatttcacactgaacaagattaccatcagcgtttcatgtcaacttcacaaaataacaAGT--------------GTCATCTATGAGG-----CGTGGATGTCTATCTT-ATATTGCGAAT---GGAG-TAGCATAC-----ACGCGGTATTAATTTGTGAATTTGGCATGAACCACCGATG-----GTATTCATGACGTT-ATT--GTA-TACC---TA-TTTATTGCGACACATCAATGACATTTG-aggcatacaacaaatgtcattgatgtgtcgcaataaataggtatacaataacgtcatgaataccatcggtggttcatgccaaattcacaaattaataccgcgtgtatgctactccattcgcaatataagatagacatccacgcctcatagatgacact
gi|6 : taaaagatagcatcccaatatgaacatctattcaaccgatttaggaacgcaaagattgtataatattgattttgatagtgttaacacaattaagatttattaaaatttcacactgaacaagattaccatcagcgtttcatgtcaacttcacaaaataacaacaataacaatatcaaacgcataagctgtgtaaatgtcatcgatgtgtcgcaataaataggcatacaacaaatgtcattgatgtgtcgnnnnnnnnnnataaataggcatacaaTACATAGTCGTTTAGTTAC--TATAGTACCGTTTCTTTAGCGTCGTTTATGAAG-----CATAGATATCAAGTTT-GTAATGCAAG-------------A-AC-----ACGCGGTACTAATTTGTGAATTTGACATGGAGCACCAATG-----GTATTCAGGTCATT-GTA--ATA-TACCAAAGA-TTTAT---GGTGTATTTATGAAAATTG-CACTGATTATG--TG----TT--A-A-TGT------T-G-TGTATGA-AATCTGCATAAATTTGA-AC----TGAGT-TAACACT-GTT-AAAATTACCATTGTGCA-AC--C-TTTGCG--TTT-TATATCGGTTCAGTGT
gi|6 : TTTATTCACATGATAA-----TGTCCTT-GCATATCGCGCACGGAAGACGACTGCTTACCT---TC-AGACAAACAACATTTTAGTGATGGCTTGccttaaatatatactagttgccgtgccagtgtttacatgctgatggaatttattcacatgataatgtccttgcatatcgcgcacggaagacgactgcttaccttcagacaaacaacattttagtgatggcttgcg
gi|7 : acactgaaccgatataaaacgcaaaggttgcacaatggtaattttaacagtgttaactcagttcaaatttatgcagatttcatacacaacattaacacataatcagtgcaattttcataaatacaccataaatctttggtatattacaatgacctgaataccattggtgctccatgtcaaattcacaaattagtaccgcgtgttcttgcattacaaacttgatatctatgcttcataaacgacgctaaagaaacggtactatagtaactaaacgactatgtaccttaaatatatactagttgccgtgccagtgtttacatgctgatggaaGTCTAGCTAGTACATAGT--------------GTCATCCATGAGG-----CATATATGTCTAGCCA-GTATTGCGAGCG-AGATA-T--CATACAATACACGCGGTATTAACATGTGAATGTGACATGAAGCACTGATG-----ATATTCATGACAAT-GAT--ATG-TGTC---CC-TCTGTTGTGATGTATCAATGAAATTTG-CACAGGTTATG--GGTTTTAT--A-A-TGTTATTGTT-G-TGTATG-----------------GA-AT----TGTG----------G-T-AAAATCATCATTGTACAGGA--C-TTTGCA--TTTCTAAATTGGTTAAGTcg
gi|7 : --CATAGT--------------GTCATCCATGAGG-----CATAGATGTCTAGCatctatgcctcatggatgacactatgtactggctagacatnnnnnnnnnncctcatggatgacactatgtactggctagacatctatgcctcatggaacacactatgatagctacatggccttgtggaatgttgttgcacttatga
gi|7 : acttaaccaatttagaaatgcaaagtcctgtacaatgatgattttaccacaattccatacacaacaataacattataaaacccataacctgtgcaaatttcattgatacatcacaacagagggacacatatcattgtcatgaatatcatcagtgcttcatgtcacattcacatgttaataccgcgtgtattgtatgatatctcgctcgcaatactggctagacatatatgcctcatggatgacactatgtacta--CATAGT--------------GTCATCCATGAGGNNNNNNNNNNATGTCTAGCCA-GTAtactggctagacatnnnnnnnnnncctcatggatgacactatgtactggctagacatctatgcctcatggaacacactatgatagctacatggccttgtggaatgttgttgcacttatga
gi|7 : acttaaccaatttagaaatgcaaagtcctgtacaatgatgattttaccacaattccatacacaacaataacattataaaacccataacctgtgcaaatttcattgatacatcacaacagagggacacatatcattgtcatgaatatcatcagtgcttcatgtcacattcacatgttaataccgcgtgtattgtatgatatctcgctcgcaatactggctagacatatatgcctcatggatgacactatgtactagctagacatctatgcctcatggatgacactatgTCATA---AGTGCAAC------AACATT----CCACAAGGCCATGTAGCTAT--CATAGT--------------GTGTTCCATGAGG-----CATAGATGTCTAGCCA-GTAtactggctagacatctatgcctcatggaacacactatgatagctacatggccttgtggaatgttgttgcacttatga
gi|8 : acttaaccaatttagaaatgcaaagtcctgtacaatgatgattttaccacaattccatacacaacaataacattataaaacccataacctgtgcaaatttcattgatacatcacaacagagggacacatatcattgtcatgaatatcatcagtgcttcatgtcacattcacatgttaataccgcgtgtattgtatgatatctcgctcgcaatactggctagacatatatgcctcatggatgacactatgtactagctagacatctatgcctcatggatgacactatgtactggctagacatnnnnnnnnnncctcatggatgacactatgTACAAGGTCGTATAGCTAC--CAACGT--------------GTCGATTATAAGT-----TTTAGATGACTAACCT-GTATTGTGAGTT-AGGA--T--TATAC-----ACACGGTACTAGTTTGTAAATTTGACATGAAGCACCGATT-----GTATTCGGGACGAC-GCC--ATG-TGCC---CA-TTTATTGCGATATATCAATGAAATTTG-AAAAGATGTTA--TATTTTGT----ATCGTTTTTGAT-A-TGTAAGA-AACTTGAAT---TTT----T----TTTAT-TG----T-GTT-AACATCATCTTTGTACA-AC--A-TTTCCG--TTTCTAAACCGGTTATGTGT
gi|8 : tGTATCTATCAACATGATAA-----TGCACCT-GTACATCGCGTACGGCGAACGACTGCTTAtattagcgatgtgctagtatccgatgccatccatgaagcgccattgatttacttaccggtagtatctatcaacatgataatgcacctgtacatcgcgtacggcgaacgactgcttaact
gi|9 : tacacataaccggtttagaaacggaaatgttgtacaaagatgatgttaacacaataaaaaaaattcaagtttcttacatatcaaaaacgatacaaaatataacatcttttcaaatttcattgatatatcgcaataaatgggcacatggcgtcgtcccgaatacaatcggtgcttcatgtcaaatttacaaactagtaccgtgtgtataatcctaactcacaatacaggttagtcatctaaaacttataatcgacacgttggtagctatacgaccttgtatattagcgatgtgctagtatccgatgccatccatgaagcgccattgatttacttaccggtaCGTATATTTAC--AAAAAT--------------TTCGTTTGTGA-------------TGTCTAGCCT-GTATTGCAAGTT-TTGGA-C--CATGT-----ACGTGGTAGTATTTTGTGAATTTGACATGAAGCCCCGATG-----ATATTCAGGACGTT-GAT--TTG-TGTT---CA-TTTATTACGGTAAATCATTAAAA--------AGGTTATG--CGTTTTTT----TTTGTAATTGTT-G-TGTAGGT-AATTTAAATAAATTTGA----------GA-TAATACT-GCT-----TTATTGTTGTA-A-AC--act
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|31 ): TTAGATGTACGGCACATGGTAATTTACATATTCGGACGACCGTTTCGCGACCGTAAAGCAC
Alignments
lowQualScore : 2222 11111 11 111 111 111111 1111 11111111111111 2222222222 2222 11111
lowQualScore : 1 1 8888 4 3 11111 1 4 0 2 3 666 4 3 1 3 1 11 8 000 1 5 1 77 1 77 2 0 000 6 999999 4444 1 33 33333333333333 55555 1 55 1111111111 88888 55555 0 2 22 2 333 2 0 2 22 4444 4 6666 1 99999 555555 0 1 3333 7777777777 22 1 3333 44444 1 66666666666 1 1 666666666 1 22 1 22
lowQualScore : . . .... . . ..... . . . . . ... . . . . . .. . ... . . . .. . .. . . ... . ...... .... . .. .............. ..... . .. .......... ..... ..... . . .. . ... . . . .. .... . .... . ..... ...... . . .... .......... .. . .... ..... . ........... . . ......... . .. . ..
lowQualScore : 0 0 3333 4 9 11111 9 0 5 5 6 444 0 7 0 3 0 00 0 222 0 7 0 33 6 99 5 1 000 6 222222 2222 9 77 88888888888888 99999 1 55 8888888888 33333 66666 2 1 99 1 777 1 1 0 88 2222 3 4444 9 44444 222222 6 7 5555 3333333333 33 7 5555 22222 7 66666666666 7 7 444444444 7 33 7 44
consensus : NNTCAGTNAAGAGAACTGACCTCNA----CTGTCTCTACCA-ACATGATAA-----TGCCCCT-GCACATCGCGCACGGCGGACGACTGCTTACC-T---TC-AGACAAACAACGTTCAAGTGATGGATTGGCCCGCGTTGTCCCCAGACATGGCTCCTNTTGAGCATGTCTGGGATGAGCTCGGNCGGCGGGTCCGTG--CACGCG-TGCCTCCGCCAAG--AAACGTCAAANA-GNTACGCCACGCCAT--CGTTCATG---AGTGNAAC------AACATT----CTACAAGGTCGTATAGCTAC--CATAGT--------------GTCGTCCATGAGG-----CGTAGATGTCTAGCCN-GTATTGCGAGTG-AGGAG-T--CATAC-----ACGCGGTATTAATTTGTGAATTTGACATGAAGCACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCC---CA-TTTATTGCGATATATCAATGAAATTTG-CACAGA--TTAT----GCGTTTTAT--AATTGTTA-TTG-T-G-TG------TATGA-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----T-TAACA---C-------T-GTT-AAAATCATC---------ATTGTACA-AC--C-TTTGCG--TTTCTAAATCGGTTGAGTGT
Reference ( family-88 ) : NNTCAGTNAAGAGAACTGACCTCNA----CTGTCTCTATCA-ACATGATAA-----TGCCCCT-GCACATCGCGCACGGCGGACGACTGCTTACC-T---TC-AGACAAACAACGTTCAAGTGATGGATTGGCCCGCGTTGTCCCCAGACATGGCTCCTNTTGAGCATGTCTGGGATGAGCTCGGNCGGCGGGTCCGTG--CACGCG-TGCCTCCGCCAAG--AAACGTCAAANA-GNTACGCCACGCCAT--CGTTCATG---AGTGNAAC------AACATT----CTACAAGGTCGTATAGCTAC--CATAGT--------------GTCGTCCATGAGG-----CGTAGATGTCTAGCCN-GTATTGCGAGTG-AGGAG-T--CATAC-----ACGCGGTATTAATTTGTGAATTTGACATGAAGCACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCC---CA-TTTATTGCGATATATCAATGAAATTTG-CACAGA--TTAT----GCGTTTTNT--AATTGTTA-TTG-T-G-TG------TATGA-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----T-TAACA---C-------T-GTT-AAAATCATC---------ATTGTACA-AC--C-TTTGCG--TTTCTAAATCGGTTGAGTGT
gi|1 : TACAAGGTCGTATAGCCAT--CATATT--------------GTCGTTTATGACG-----CAAAGAT--------------TGCGAGTG-GGGA------ATA------ACGTAGTATT-----GTGAATTTGACACGAAACACCGATG-----GTATTCAGGACGTTTATT--ATA-TGCC---CA-TTTATTGCGATATATGAATGAAATTTG-CACAGA--TTAT----GCGTTTAAT--A-TTGTTA-TTG-TTG-TG------TATGA-CATT----TAAA----------AAAGATTG--A-GT----TGTA-----T-TAACA---C-------T-G------------------------ATACA-AT--C-TTTGCG--TTTGT-AGTCGGTTGAGTGT
gi|1 : tTCTACAG-ACATGGTAA-----TTTGCCT-GCAC------------GGACGACTGTTTACG-A---TCTAGTGAAGCACCGTTCAAGTGATGGAATGGCCCGCGTTGTCCCCAGACATGGCTCTAGTTAAGCATGTCTGGGATGAGCTCGGGCGACGAGTCTTTG--CACGTG-TGACTCCGCCAAG--AAACGTTACAAA-GTTA--CTACCCCATGCCCTTCTTG---A-TG--------------------CCACACGCTCGCATAGCTTC--CATGGT--------------ATCGTTTATGAGcattaacgatgtgctaattcccgttgccatgccagtcatgaggcgccatttttacctgctggttagatctacagacatggtaatttgcctgcacggacgactgtttacgatctagtgaagcaccgttcaagtgatggaatggcccgcgttgtccccagacatggctctagttaagcatgtctgggatgagctcgggcgacgagtctttgcacgtgtgactccgccaagaaacgttacaaagttactaccccatgcccttcttgatgccacacgctcgcatagcttccatggtatcgtttatgag
gi|10 : tacactcaaccgactacaaacgcaaagattgtatcagtgttaatacaactcaatcttttttaaatgtcatacacaacaataacaatattaaacgcataatctgtgcaaatttcattcatatatcgcaataaatgggcatataataaacgtcctgaataccatcggtgtttcgtgtcaaattcacaatactacgttattccccactcgcaatctttgcgtcataaacgacaatatgatggctatacgaccttgtacattaacgatgtgctaattcccgttgccatgccagtcatgaggcgccatttttacctgctggttagaT--------------GTTGTACATAAGG-----CATAGCTGTCAAG--------TG-----G-AGGA--T--TATAC-----AAGCGGTATTAATTTGCGAGTTTGACATGAAGAGCCAATG-----GTATTCAGGACATT-GTT--ATG-TGCC---CA-TTTATGGCGATTTATCAATGAAATTTG-TACAGA--TTGT----GTG-TTTAT---ATGGTTA-TTGTT-G-TG------TATAA-AATT----CTAA----------TTAATTCT--A-TT----TGTG-----T-TAACA---C-------T-GTT-AAAATCATC---------ATTGTACA-AC--C-TTTGCG--TTTCTTGATCCGTTTAGTG
gi|11 : gG-----CGTAGATGTTT-GCCGTGTATTGCGAGTG--GGAGAT--CATGC-----ACGTGGCATTAATTTGTGAATTTGATATGAAACACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCC---TA-TTTAGTGCGATATATCAATAAAACTAG-CACAGG--TTAT----GTGTTTGAT---ATTGTTA-TTGTT-A-TG------TATGG-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----T-AAACA---C-------T-GTT-AAAATTATC---------ATTGTACA-A-----TTTG-------TTAAATCGAT--AATGT
gi|12 : cATGAAACTTA-CACATA--TTAT----GTATTTTAT--A-TTATTA-TTG-T-G-TG------TA--A-AATT----AAAA----------CAAAAATG--A-AT----TGTA-----T-TAACA---C-------T-GTC-AAAATCATC---------ATTGTACA-AC--C-TGTGAA--TTTCTAAATTGGTTAAG
gi|13 : TTGTGATTTTGACATGAAG-ACCGGTG-----ATATTCAGGAGGAT-GTG--TTG-TGTC---CA-TTTATTGCGATA---------AATTTG-CACGGA--TTAT----GCGTTTTAT--A-TTGTTA-TTG-TTG-TG------CATAA-AATT----TGAA----------TACATTTA--A-AT----GGTG-----T-TAACA---C-------T-GTT-GAAATCAAC---------ATTGTACA-AC--C-TCTGCG--TTTCTAAATCGGTCGAGTGagcgcactgaggatgacttatatgttacttacatctcattatatgttaccaatatctcattatatgtta
gi|14 : GCAACGCTG-----ATATTCAGGAGGT--GTT--TTG-TGCC---CA-TTTATTGCGGTATTTCAAAGACATTTG-CACAGA--TTATAATTGCGTTTCAT--A-TTGTTA-TTG-TTG-TG------TATGA-AATT----TAAA----------TAAATTTG--A-AT----CGTG-----T-CAACA---C-------T-GTT-AAAATTATC---------ATTGTACA-AC--CTTTTGTG--TTTCTTAACCAGTTTAGTGT
gi|15 : ATAATGCACCGATGGGATGGTATTCAGGACATT-GTT--ACG-CGCC---CA-TTTATTGTGATATGTCAATGAAATTTT-GAAAAG--TTAT----ACGTTTTAT---ATTGCAA-TTGTT-A-TG------TATGAGAATT----T-AA----------TAAATTTA--A-AC----TG-------------------------T-GTT-AAAATCATC---------ATTGTATA-AC--C-TTTACG--TTTCTAAATCGGTTGAGTGT
gi|16 : AGCACCAATG-----GTATTCAGGACATT-GTT--GTG-TGTC---CT-TTTATTGTGATATATCAATGAAATATC-CACAGA--GTAT----------TAT--G-TTGTTA-TTA-TTG-TG------CATGA-ATAT----TGAA----------TAAATTTA--A-AT----TGTG-----T-TAACA---C-------T-GTT-AAAATCCTC---------ATTGTATA-AC--C-TATGCG--TTTCTAAGTCGGTTGAGTGT
gi|17 : TCCGCCAG----AACATGGAAAATGGCACCTCACGA-AT--GGT--ATGGCAAATGAAACTAACACAACGTTAATGC-ACAAGGTTGTATAGCTAC--CATAGT--------------ATCATTCATAAGC-----CATAAATGTa
gi|17 : ttcctcTCTACCA-ACATGATAA-----TACACCT-TCATATCGCACATGGAGGATGACTGCCTACC-T---atctaccaacatgataatacaccttcatatcgcacatggaggatgactgcctacct
gi|18 : ttcctcacatttatggcttatgaatgatactatggtagctatacaaccttgtgcattaacgttgtgttagtttcatttgccataccattcgtgaggtgccattttccatgttctggcggaaTCAAGACATT------ATG-TGCC---CA-TTTATTGCGATATATCAAT-------------AA--TTGT----GCGTTTT------TTGTTA-TTG-CGG-TG------TA------------TGAA----------TATATTTC--C-AT----TGCG-----T-GAACA---C-------T-GTT-TAAATCATC---------ATTGTACA-AC--A-TTTGCGATTTTATAAAGCGGTTGAATGT
gi|19 : -AGACAAACAACGTTCAAGTGACGTATTGGTCAGTGTGATCCCCAGATATCACTCTTATGGAGCATGTCTTGGATGAGCTCGGCCCGCGGTTCCGTGCACACACG-TGCCTCCGCCAAG--AAACGTCAAATA-AAAACGCCATGTCCT--CGTTGATT---CGTGAAtaaatccacaaataaatacttctgcca
gi|2 : TCAGTGAAGAGAACTGACCTCTA----CTGTCTTTATAA-ACTTGATAA-----TGCCCTT-ACACATCGCACACGGCGGCCGACTGTTTATT-G---TC-ATACAAACAACGTTCAAGTGATGGATTGGCCAGCACTGTCCCAAGACACGACTCCTTTTGAACATGTCTGAGATGGATTCGAACGGCGGGTCCGTG--CACGCG-CGCATCCGCCAAA--ACATGTCAGAGA-GATACGCCACGTCAT--CGTCCATG---AGTGGGAC------AACATT----CTACAAAGTCGTATAGCTAT--CATAGT--------------GTCGTCTA-GAAG-----TGTATACCTCGAGTCA-GTATTGCGAATGTAGGGGCT--CATAC-----ACGCGGTAT---TTTGTGAATTTGACATTAAGCACCGATG-----GTATTCAGGACATT-GTT--ATG-TTCC---CA-TTTATTGCGATAAGTCAATGAAATGTG-CACAGT--TTAT----TTCTTTTTTAAAATTTTTT-TTG-T-G-TG------TACGA-AATT----TGAA----------TAAATTTG--A-AT----GGTT-----T-TCACA---C-------T-GCT-AAAATCATC---------ATTGTACA-AC--G-TTTGTG--TTTCTTAATCGGATGAGTGTtaaataaacaaa
gi|20 : cgCGGTG-----GTATTCAGGACGCT-CTT--ATG-TGCC---TA-TTTATTGCGATAAAACAATGAAATTTA-CACATA--TTGT----GCATTTTAT---ATTCTTA-TTATT-G-CG------TATGA-AATT----TAAA----------TGAA-TTG--A-AT----TGTG-----T-T---------------T-AT-----ATCACC---------ATTGCACA-TC--C-TTTGTG--TATCTAAATCGGTTGAATG
gi|21 : AAGCACCGATG-----GTATTCAGAACTAT-GTG--TTG-TGCC---CATTTTTTTGCGATATATCAATGGAATTTGTTACATA--TTAT----GCGATTTGC---ATTGTTA-TCGTT-G-TG------TCTGA-AATA----TGTA----------T-----------------------------------------------TT-AAAATCATC---------ATTGTACA-AC--A-TTTGCG--
gi|22 : tcaatgttcgaattatacttTTATCCCCAGTAATGGCTCCTTTGGAGCATGTTTGTGATGAGCTCGGACGGCGGGACCGTG--CACGCGATACA-CCGTAAAGAAAAACGTCAAATA-TTTAGGCCACACCCC--CGCTCATG---AGTGGAAC------AACATT----CAACAAAGTTGTATAGCTAC--CGTAGT--------------GT
gi|23 : TCAATAAAGCAAACTGACCCTGA----CTGTCTTTATCATAT-TGATAA-----TGGCA-T-GCACGTCGCACACGTCGGCCGACTTCTCGCAAT---TC--TACAAACACCGTTCAAGTGATAGATTGGCCTTCATTGTTCCTAGA
gi|24 : tct-GCACATCGCGCACGGCGGACAACGGCTGACA-T---TT-AGACAAGCAATATTTAAGTGATGGATTGGCTCGCGTTGTTCCCAGATATGGCTCCTATTGAGTATATACGGGACAAG
gi|25 : ataACGACTGCTTACC-TAAATC-AGACAAACATCGTTCAGGTGATGGATTGACCGGCGTTATCCCCAGTTATGA----TCTTGAACGT
gi|26 : ttacacataaccaagtcagaaacT--AATTTTTAATTG-T------------------ATT----TGAA----------TAAATTTG--A-AT----TGTG-----T-TAACA---C-------TAGTT---AATCATC---------CTTGTACA-AC--C-TTTGCG--TTTCTAAA--AGTTGAATGTtgttt
gi|27 : atAATGAAATTTG-TACATA--TCAT----GCGTTTTAT--A--------TTG-C------------------------------------------ATTTG-----T----TGTG-----TATAAAA---T-------T---T-AAAATCTTC---------ATTATCCA-AC--C-ATTACT--TTTCTAAATCGGTTGAttcaattt
gi|28 : -T-G-TG------TATGA-AAAT----TGAA----------TGAACTTG--ATATGAAATGTG-----T-TAACA---C-------T-ATT-AAAATTATC---------ATTGTACA-ACATG-TTTGCG--TTTCTAAATCGGTTGAGT
gi|29 : aTCTGTTAAGAGAACTGACCTCCGTTGTCTGTCTTTATCA-ACTTGATAA-----TGCCTAT-ACACAACACGAACAGCAGACAACTGCTTA
gi|3 : aTACAAGGCTGTGTAGCTAC--CATAGT--------------ATTGTCTATGAGG-----TGTAGAAGTCTAGCCA-GTATTATGAGTG-GGGGA-T--CATGC-----AAACGGTATTAATTTGTGAATTTGGCATGAAGAACCGATG-----ATATCCAGAACAAT-G-T--ATGTTGCC---CA-TTTATTGCGACATATCAATGGAATTTG-CACAGA--TTGT----GCATCTTAT---GTTGCTA-TTGTT-A-TA------TATGA-AATT----TAAA----------TAAATTC-------------TG-----T-TAACA---A-------T-GTTAAAAATTGTT---------GTTGTACA-AC--C-TTTGCA--CTTCTAAATCGATCGAGTGTt
gi|3 : TCTACTA-ACATGATAACTTGATGCCCCT-GCACATTGCAATTGGAGGATGACTGCTTACC-T---TC-AAACAAACAACATT---------GATTGGCCTGTGTGATCCCCAGACATTGCTCCTATAGAGCATGTCTGAGA----------------GT--GTG--CCCGTT-TGCCTTTGCCAAG--AAATGTCAGAGA-ATTACACCATGCCAT--cattaaccatgtgttagttcctgttgccaatgccctgcatgaagtgccatttcccacatgctggtgaaatctactaacatgataacttgatgcccctgcacattgcaattggaggatgactgcttaccttcaaacaaacaacattgattggcctgtgtgatccccagacattgctcctatagagcatgtctgagagtgtgcccgtttgcctttgccaagaaatgtcagagaattacaccatgccat
gi|30 : acactcgatcgatttagaagtgcaaaggttgtacaacaacaatttttaacattgttaacagaatttatttaaatttcatatataacaatagcaacataagatgcacaatctgtgcaaattccattgatatgtcgcaataaatgggcaacatacattgttctggatatcatcggttcttcatgccaaattcacaaattaataccgtttgcatgatcccccactcataatactggctagacttctacacctcatagacaatactatggtagctacacagccttgtacattaaccatgtgttagttcctgttgccaatgccctgcatgaagtgccatttcccacatgctggtgaaaTT----TGAA----------TAAATTTG--A-AT----TGTT-----T-TAACA---T-------T-GTT-AAATTCAGC---------ACTGTGCA-GA--C-ATTGCA--TTTCTAAATCGCTTAAGTGT
gi|32 : tACAGA--GTGT----GCGTCT------GTTGTTG-TGG-T-GGTG------TATGA-CATT----TGAA----------AGAAATTG--A-AT----TGTG-----T-TA
gi|33 : GA-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----T-TAACA---C----------TT-AAAATCACC---------
gi|34 : ttagaaacga-T---TT-AGGCAAACAACGTTCAAGTGACGTACTGGTCCGTGTGGTCCCCAGACA
gi|35 : AGA-----CGTAGGTTTTTAGCCT-GTATTGCGAGTG-AGGA--T--CATGC-----ACGTGGTA
gi|36 : -AAAATCCTC---------ATTGTACA-AC--C-ATAAAG--TTTCTCAATCGGTTGGGTG
gi|37 : tgAAATCGTC---------ATTGTACA-AC--A-TTTGCG--TTTC-AAACCGGTCAAGTGT
gi|38 : tTGTTCCCAGACATGCCTTCAATTGAGCATGTCTGGGATGAG
gi|4 : TACATGGTTGTATAGCCAC--CATAGT--------------GGTGTATATGAGG-----TGTAGATGTCAAGCCT-GTATTGCAAGTG-GGGGA-T--CATAT-----ATGAGATATTAATTTGTGAATTTGACACAAAACACCGATA-----GTATTCAGGACATT-GTTAAAAG-AAGC---CA-TT--TTGTGA-ACAACAATGA
gi|4 : tacaaaacattccaTCTGCCA-AGGTGATAA-----TGCCCCTAGAATATCAAACATGGAGGACGACTGCTTACC-T---TT-AGACAAACAACGTTCAAGTGATGGATTGGCCTGTGTATTCTCCAGATACGGCTCCTTTTAAGCATGTCTGAGATGAGTTTGGTCAACAGGTCCATcattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaatctgccaaggtgataatgcccctagaatatcaaacatggaggacgactgcttacctttagacaaacaacgttcaagtgatggattggcctgtgtattctccagatacggctccttttaagcatgtctgagatgagtttggtcaacaggtccatcctttcttcataagtgcaacaacattccacaaggccatgtagctatcatagtgtgttccatgaggcatagatgtctagccagt
gi|4 : tacaaaacattccatcattgttgttcacaaaatggcttcttttaacaatgtcctgaatactatcggtgttttgtgtcaaattcacaaattaatatctcatatatgatcccccacttgcaatacaggcttgacatctacacctcatatacaccactatggtggctatacaaccatgtacattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaaGTCAA-CA-GGT---CCATCCTTT--C-TTCATA---AGTGCAAC------AACATT----CCACAAGGCCATGTAGCTAT--CATAGT--------------GTGTTCCATGAGG-----CATAGATGTCTAGCCA-GTcctttcttcataagtgcaacaacattccacaaggccatgtagctatcatagtgtgttccatgaggcatagatgtctagccagt
gi|5 : tacaaaacattccatcattgttgttcacaaaatggcttcttttaacaatgtcctgaatactatcggtgttttgtgtcaaattcacaaattaatatctcatatatgatcccccacttgcaatacaggcttgacatctacacctcatatacaccactatggtggctatacaaccatgtacattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaatctgccaaggtgataatgcccctagaatatcaaacatggaggacgactgcttacctttagacaaacaacgttcaagtgatggattggcctgtgtattctccagatacggctccttttaagcatgtctgagatgagtttgATTTATNNNNNNNNNNCGACACATCAATG-----ACATT--------T-GTT--GTA-TGCC---TA-TTTATTGCGACACATCGATGACATTTA-CACAGC--TTAT----GCGTTTGAT---ATTGTTA-TTG-T---TGTTATTTTGTGA-AGTTGACATGAAACGCTGATGGTAATCTTGTTC-AG----TGTGAAATTT-TAATAAATCTTAATTGT-GTT-AACACTATCAAAATCAATATTATACA-AT--C-TTTGCG--TTCCTAAATCGGTTGAAT
gi|5 : taaaagatagcatcccaatatgaacatctAGT--------------GTCATCTATGAGG-----CGTGGATGTCTATCTT-ATATTGCGAATG---GAG-TAGCATAC-----ACGCGGTATTAATTTGTGAATTTGGCATGAACCACCGATG-----GTATTCATGACGTT-ATT--GTA-TACC---TA-TTTATTGCGACACATCAATGACATTTG-aggcatacaacaaatgtcattgatgtgtcgcaataaataggtatacaataacgtcatgaataccatcggtggttcatgccaaattcacaaattaataccgcgtgtatgctactccattcgcaatataagatagacatccacgcctcatagatgacact
gi|6 : taaaagatagcatcccaatatgaacatctattcaaccgatttaggaacgcaaagattgtataatattgattttgatagtgttaacacaattaagatttattaaaatttcacactgaacaagattaccatcagcgtttcatgtcaacttcacaaaataacaacaataacaatatcaaacgcataagctgtgtaaatgtcatcgatgtgtcgcaataaataggcatacaacaaatgtcattgatgtgtcgnnnnnnnnnnataaataggcatacaaTACATAGTCGTTTAGTTAC--TATAGTACCGTTTCTTTAGCGTCGTTTATGAAG-----CATAGATATCAAGTTT-GTAATGCAAG-------------A-AC-----ACGCGGTACTAATTTGTGAATTTGACATGGAGCACCAATG-----GTATTCAGGTCATT-GTA--ATA-TACCAAAGA-TTTAT---GGTGTATTTATGAAAATTG-CACTGA--TTAT----GTGT----T--AA-TGT-------T-G-TG------TATGA-AATC----TGCA----------TAAATTTG--A-AC----TGAG-----T-TAACA---C-------T-GTT-AAAATTACC---------ATTGTGCA-AC--C-TTTGCG--TTT-TATATCGGTTCAGTGT
gi|6 : TTTATTC-ACATGATAA-----TGTCCTT-GCATATCGCGCACGGAAGACGACTGCTTACC-T---TC-AGACAAACAACATTTTAGTGATGGCTTGccttaaatatatactagttgccgtgccagtgtttacatgctgatggaatttattcacatgataatgtccttgcatatcgcgcacggaagacgactgcttaccttcagacaaacaacattttagtgatggcttgcg
gi|7 : acactgaaccgatataaaacgcaaaggttgcacaatggtaattttaacagtgttaactcagttcaaatttatgcagatttcatacacaacattaacacataatcagtgcaattttcataaatacaccataaatctttggtatattacaatgacctgaataccattggtgctccatgtcaaattcacaaattagtaccgcgtgttcttgcattacaaacttgatatctatgcttcataaacgacgctaaagaaacggtactatagtaactaaacgactatgtaccttaaatatatactagttgccgtgccagtgtttacatgctgatggaaGTCTAGCTAGTACATAGT--------------GTCATCCATGAGG-----CATATATGTCTAGCCA-GTATTGCGAGCG-AGATA-T--CATACAATACACGCGGTATTAACATGTGAATGTGACATGAAGCACTGATG-----ATATTCATGACAAT-GAT--ATG-TGTC---CC-TCTGTTGTGATGTATCAATGAAATTTG-CACAGG--TTAT----GGGTTTTAT--AA-TGTTA-TTGTT-G-TG------TATG-------------------------------G--A-AT----TGTG-------------------------G-T-AAAATCATC---------ATTGTACAGGA--C-TTTGCA--TTTCTAAATTGGTTAAGTcg
gi|7 : --CATAGT--------------GTCATCCATGAGG-----CATAGATGTCTAGCatctatgcctcatggatgacactatgtactggctagacatnnnnnnnnnncctcatggatgacactatgtactggctagacatctatgcctcatggaacacactatgatagctacatggccttgtggaatgttgttgcacttatga
gi|7 : acttaaccaatttagaaatgcaaagtcctgtacaatgatgattttaccacaattccatacacaacaataacattataaaacccataacctgtgcaaatttcattgatacatcacaacagagggacacatatcattgtcatgaatatcatcagtgcttcatgtcacattcacatgttaataccgcgtgtattgtatgatatctcgctcgcaatactggctagacatatatgcctcatggatgacactatgtacta--CATAGT--------------GTCATCCATGAGGNNNNNNNNNNATGTCTAGCCA-GTAtactggctagacatnnnnnnnnnncctcatggatgacactatgtactggctagacatctatgcctcatggaacacactatgatagctacatggccttgtggaatgttgttgcacttatga
gi|7 : acttaaccaatttagaaatgcaaagtcctgtacaatgatgattttaccacaattccatacacaacaataacattataaaacccataacctgtgcaaatttcattgatacatcacaacagagggacacatatcattgtcatgaatatcatcagtgcttcatgtcacattcacatgttaataccgcgtgtattgtatgatatctcgctcgcaatactggctagacatatatgcctcatggatgacactatgtactagctagacatctatgcctcatggatgacactatgTCATA---AGTGCAAC------AACATT----CCACAAGGCCATGTAGCTAT--CATAGT--------------GTGTTCCATGAGG-----CATAGATGTCTAGCCA-GTAtactggctagacatctatgcctcatggaacacactatgatagctacatggccttgtggaatgttgttgcacttatga
gi|8 : acttaaccaatttagaaatgcaaagtcctgtacaatgatgattttaccacaattccatacacaacaataacattataaaacccataacctgtgcaaatttcattgatacatcacaacagagggacacatatcattgtcatgaatatcatcagtgcttcatgtcacattcacatgttaataccgcgtgtattgtatgatatctcgctcgcaatactggctagacatatatgcctcatggatgacactatgtactagctagacatctatgcctcatggatgacactatgtactggctagacatnnnnnnnnnncctcatggatgacactatgTACAAGGTCGTATAGCTAC--CAACGT--------------GTCGATTATAAGT-----TTTAGATGACTAACCT-GTATTGTGAGTT-AGGA--T--TATAC-----ACACGGTACTAGTTTGTAAATTTGACATGAAGCACCGATT-----GTATTCGGGACGAC-GCC--ATG-TGCC---CA-TTTATTGCGATATATCAATGAAATTTG-AAAAGATGTTAT------ATTTTGT---ATCGTTT-TTGAT-A-TG------TAAGA-AACT----TGAA----------T---TTT------T----TTTA-----T-TG--------------T-GTT-AACATCATC---------TTTGTACA-AC--A-TTTCCG--TTTCTAAACCGGTTATGTGT
gi|8 : tGTATCTATCA-ACATGATAA-----TGCACCT-GTACATCGCGTACGGCGAACGACTGCTTAAC-T---tattagcgatgtgctagtatccgatgccatccatgaagcgccattgatttacttaccggtagtatctatcaacatgataatgcacctgtacatcgcgtacggcgaacgactgcttaact
gi|9 : tacacataaccggtttagaaacggaaatgttgtacaaagatgatgttaacacaataaaaaaaattcaagtttcttacatatcaaaaacgatacaaaatataacatcttttcaaatttcattgatatatcgcaataaatgggcacatggcgtcgtcccgaatacaatcggtgcttcatgtcaaatttacaaactagtaccgtgtgtataatcctaactcacaatacaggttagtcatctaaaacttataatcgacacgttggtagctatacgaccttgtatattagcgatgtgctagtatccgatgccatccatgaagcgccattgatttacttaccggtaCGTATATTTAC--AAAAAT--------------TTCGTTTGTGA-------------TGTCTAGCCT-GTATTGCAAGTT-TTGGA-C--CATGT-----ACGTGGTAGTATTTTGTGAATTTGACATGAAGCCCCGATG-----ATATTCAGGACGTT-GAT--TTG-TGTT---CA-TTTATTACGGTAAATCATTAAAA--------AGG--TTAT----GCGTTTTTT---TTTGTAA-TTGTT-G-TG------TAGGT-AATT----TAAA----------TAAATTTG--A----------G-----A-TAATA---C-------T-GCT-----TTATT---------GTTGTA-A-AC--
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|31 ): TTAGATGTACGGCACATGGTAATTTACATATTCGGACGACCGTTTCGCGACCGTAAAGCAC
Alignments
lowQualScore : 2222 11111 11 111 111 111111 1111 11111111111111 2222222222 22 11111
lowQualScore : 1 1 8888 4 3 11111 1 4 0 2 3 666 4 3 1 3 1 11 8 000 1 5 1 77 1 77 2 0 000 6 999999 4444 1 33 33333333333333 55555 1 55 1111111111 88888 55555 0 2 22 2 333 2 0 2 22 22 4444 22 1 99999 555555 0 1 3333 7777777777 22 1 3333 44444 1 66666666666 1 1 666666666 1 22 1 22
lowQualScore : . . .... . . ..... . . . . . ... . . . . . .. . ... . . . .. . .. . . ... . ...... .... . .. .............. ..... . .. .......... ..... ..... . . .. . ... . . . .. .. .... .. . ..... ...... . . .... .......... .. . .... ..... . ........... . . ......... . .. . ..
lowQualScore : 0 0 3333 4 9 11111 9 0 5 5 6 444 0 7 0 3 0 00 0 222 0 7 0 33 6 99 5 1 000 6 222222 2222 9 77 88888888888888 99999 1 22 8888888888 33333 66666 2 1 99 1 777 1 1 0 88 88 2222 77 9 44444 222222 6 7 5555 3333333333 33 7 5555 22222 7 66666666666 7 7 444444444 7 33 7 44
consensus : NNTCAGTNAAGAGAACTGACCTCNA----CTGTCTCTACCA-ACATGATAA-----TGCCCCT-GCACATCGCGCACGGCGGACGACTGCTTACC-T---TC-AGACAAACAACGTTCAAGTGATGGATTGGCCCGCGTTGTCCCCAGACATGGCTCCTNTTGAGCATGTCTGGGATGAGCTCGGNCGGCGGGTCCGTG--CACGCG-TGCCTCCGCCAAG--AAACGTCAAANA-GNTACGCCACGCCAT--CGTTCATG---AGTGNAAC------AACATT----CTACAAGGTCGTATAGCTAC--CATAGT--------------GTCGTCCATGAGG-----CGTAGATGTCTAGCCN-GTATTGCGAGTG-AGGAG-T--CATAC-----ACGCGGTATTAATTTGTGAATTTGACATGAAGCACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCC---CA-TTTATTGCGATATATCAATGAAATTTG-CACAGA--TTA--T----GCGTTTTATAATTGTTA-TTGTT-G-TG------TATGA-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----T-TAACA---C-------T-GTT-AAAATCATC---------ATTGTACA-AC--C-TTTGCG--TTTCTAAATCGGTTGAGTGT
Reference ( family-88 ) : NNTCAGTNAAGAGAACTGACCTCNA----CTGTCTCTACCA-ACATGATAA-----TGCCCCT-GCACATCGCGCACGGCGGACGACTGCTTACC-T---TC-AGACAAACAACGTTCAAGTGATGGATTGGCCCGCGTTGTCCCCAGACATGGCTCCTNTTGAGCATGTCTGGGATGAGCTCGGNCGGCGGGTCCGTG--CACGCG-TGCCTCCGCCAAG--AAACGTCAAANA-GNTACGCCACGCCAT--CGTTCATG---AGTGNAAC------AACATT----CTACAAGGTCGTATAGCTAC--CATAGT--------------GTCGTCCATGAGG-----CGTAGATGTCTAGCCN-GTATTGCGAGTG-AGGAG-T--CATAC-----ACGCGGTATTAATTTGTGAATTTGACATGAAGCACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCC---CA-TTTATTGCGATATATCAATGAAATTTG-CACAGA--TTA--T----GCGTTTTATAATTGTTA-TTG-T-G-TG------TATGA-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----T-TAACA---C-------T-GTT-AAAATCATC---------ATTGTACA-AC--C-TTTGCG--TTTCTAAATCGGTTGAGTGT
gi|1 : TACAAGGTCGTATAGCCAT--CATATT--------------GTCGTTTATGACG-----CAAAGAT--------------TGCGAGTG-GGGA------ATA------ACGTAGTATT-----GTGAATTTGACACGAAACACCGATG-----GTATTCAGGACGTTTATT--ATA-TGCC---CA-TTTATTGCGATATATGAATGAAATTTG-CACAGA--TTA--T----GCGTTTAATA-TTGTTA-TTG-TTG-TG------TATGA-CATT----TAAA----------AAAGATTG--A-GT----TGTA-----T-TAACA---C-------T-G------------------------ATACA-AT--C-TTTGCG--TTTGT-AGTCGGTTGAGTGT
gi|1 : tTCTACAG-ACATGGTAA-----TTTGCCT-GCAC------------GGACGACTGTTTACG-A---TCTAGTGAAGCACCGTTCAAGTGATGGAATGGCCCGCGTTGTCCCCAGACATGGCTCTAGTTAAGCATGTCTGGGATGAGCTCGGGCGACGAGTCTTTG--CACGTG-TGACTCCGCCAAG--AAACGTTACAAA-GTTA--CTACCCCATGCCCTTCTTG---A-TG--------------------CCACACGCTCGCATAGCTTC--CATGGT--------------ATCGTTTATGAGcattaacgatgtgctaattcccgttgccatgccagtcatgaggcgccatttttacctgctggttagatctacagacatggtaatttgcctgcacggacgactgtttacgatctagtgaagcaccgttcaagtgatggaatggcccgcgttgtccccagacatggctctagttaagcatgtctgggatgagctcgggcgacgagtctttgcacgtgtgactccgccaagaaacgttacaaagttactaccccatgcccttcttgatgccacacgctcgcatagcttccatggtatcgtttatgag
gi|10 : tacactcaaccgactacaaacgcaaagattgtatcagtgttaatacaactcaatcttttttaaatgtcatacacaacaataacaatattaaacgcataatctgtgcaaatttcattcatatatcgcaataaatgggcatataataaacgtcctgaataccatcggtgtttcgtgtcaaattcacaatactacgttattccccactcgcaatctttgcgtcataaacgacaatatgatggctatacgaccttgtacattaacgatgtgctaattcccgttgccatgccagtcatgaggcgccatttttacctgctggttagaT--------------GTTGTACATAAGG-----CATAGCTGTCAAG--------TG-----G-AGGA--T--TATAC-----AAGCGGTATTAATTTGCGAGTTTGACATGAAGAGCCAATG-----GTATTCAGGACATT-GTT--ATG-TGCC---CA-TTTATGGCGATTTATCAATGAAATTTG-TACAGA--TTG--T----GTG-TTTAT-ATGGTTA-TTGTT-G-TG------TATAA-AATT----CTAA----------TTAATTCT--A-TT----TGTG-----T-TAACA---C-------T-GTT-AAAATCATC---------ATTGTACA-AC--C-TTTGCG--TTTCTTGATCCGTTTAGTG
gi|11 : gG-----CGTAGATGTTT-GCCGTGTATTGCGAGTG--GGAGAT--CATGC-----ACGTGGCATTAATTTGTGAATTTGATATGAAACACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCC---TA-TTTAGTGCGATATATCAATAAAACTAG-CACAGG--TTA--T----GTGTTTGAT-ATTGTTA-TTGTT-A-TG------TATGG-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----T-AAACA---C-------T-GTT-AAAATTATC---------ATTGTACA-A-----TTTG-------TTAAATCGAT--AATGT
gi|12 : cATGAAACTTA-CACATA--TTA--T----GTATTTTATA-TTATTA-TTG-T-G-TG------TA--A-AATT----AAAA----------CAAAAATG--A-AT----TGTA-----T-TAACA---C-------T-GTC-AAAATCATC---------ATTGTACA-AC--C-TGTGAA--TTTCTAAATTGGTTAAG
gi|13 : TTGTGATTTTGACATGAAG-ACCGGTG-----ATATTCAGGAGGAT-GTG--TTG-TGTC---CA-TTTATTGCGATA---------AATTTG-CACGGA--TTA--T----GCGTTTTAT-ATTGTTA-TTGTT-G-TG------CATAA-AATT----TGAA----------TACATTTA--A-AT----GGTG-----T-TAACA---C-------T-GTT-GAAATCAAC---------ATTGTACA-AC--C-TCTGCG--TTTCTAAATCGGTCGAGTGagcgcactgaggatgacttatatgttacttacatctcattatatgttaccaatatctcattatatgtta
gi|14 : GCAACGCTG-----ATATTCAGGAGGT--GTT--TTG-TGCC---CA-TTTATTGCGGTATTTCAAAGACATTTG-CACAGA--TTA--TAATTGCGTTTCATA-TTGTTA-TTG-TTG-TG------TATGA-AATT----TAAA----------TAAATTTG--A-AT----CGTG-----T-CAACA---C-------T-GTT-AAAATTATC---------ATTGTACA-AC--CTTTTGTG--TTTCTTAACCAGTTTAGTGT
gi|15 : ATAATGCACCGATGGGATGGTATTCAGGACATT-GTT--ACG-CGCC---CA-TTTATTGTGATATGTCAATGAAATTTT-GAAAAG--TTA--T----ACGTTTTAT-ATTGCAA-TTGTT-A-TG------TATGAGAATT----T-AA----------TAAATTTA--A-AC----TG-------------------------T-GTT-AAAATCATC---------ATTGTATA-AC--C-TTTACG--TTTCTAAATCGGTTGAGTGT
gi|16 : AGCACCAATG-----GTATTCAGGACATT-GTT--GTG-TGTC---CT-TTTATTGTGATATATCAATGAAATATC-CACAGA--GTA--T----------TATG-TTGTTA-TTA-TTG-TG------CATGA-ATAT----TGAA----------TAAATTTA--A-AT----TGTG-----T-TAACA---C-------T-GTT-AAAATCCTC---------ATTGTATA-AC--C-TATGCG--TTTCTAAGTCGGTTGAGTGT
gi|17 : TCCGCCAG----AACATGGAAAATGGCACCTCACGA-AT--GGT--ATGGCAAATGAAACTAACACAACGTTAATGC-ACAAGGTTGTATAGCTAC--CATAGT--------------ATCATTCATAAGC-----CATAAATGTa
gi|17 : ttcctcTCTACCA-ACATGATAA-----TACACCT-TCATATCGCACATGGAGGATGACTGCCTACC-T---atctaccaacatgataatacaccttcatatcgcacatggaggatgactgcctacct
gi|18 : ttcctcacatttatggcttatgaatgatactatggtagctatacaaccttgtgcattaacgttgtgttagtttcatttgccataccattcgtgaggtgccattttccatgttctggcggaaTCAAGACATT------ATG-TGCC---CA-TTTATTGCGATATATCAAT-------------AA--TTG--T----GCGTTTT----TTGTTA-TTG-CGG-TG------TA------------TGAA----------TATATTTC--C-AT----TGCG-----T-GAACA---C-------T-GTT-TAAATCATC---------ATTGTACA-AC--A-TTTGCGATTTTATAAAGCGGTTGAATGT
gi|19 : -AGACAAACAACGTTCAAGTGACGTATTGGTCAGTGTGATCCCCAGATATCACTCTTATGGAGCATGTCTTGGATGAGCTCGGCCCGCGGTTCCGTGCACACACG-TGCCTCCGCCAAG--AAACGTCAAATA-AAAACGCCATGTCCT--CGTTGATT---CGTGAAtaaatccacaaataaatacttctgcca
gi|2 : TCAGTGAAGAGAACTGACCTCTA----CTGTCTTTATAA-ACTTGATAA-----TGCCCTT-ACACATCGCACACGGCGGCCGACTGTTTATT-G---TC-ATACAAACAACGTTCAAGTGATGGATTGGCCAGCACTGTCCCAAGACACGACTCCTTTTGAACATGTCTGAGATGGATTCGAACGGCGGGTCCGTG--CACGCG-CGCATCCGCCAAA--ACATGTCAGAGA-GATACGCCACGTCAT--CGTCCATG---AGTGGGAC------AACATT----CTACAAAGTCGTATAGCTAT--CATAGT--------------GTCGTCTA-GAAG-----TGTATACCTCGAGTCA-GTATTGCGAATGTAGGGGCT--CATAC-----ACGCGGTAT---TTTGTGAATTTGACATTAAGCACCGATG-----GTATTCAGGACATT-GTT--ATG-TTCC---CA-TTTATTGCGATAAGTCAATGAAATGTG-CACAGT--TTATTT----CTTTTTTAAAATTTTTT-TTG-T-G-TG------TACGA-AATT----TGAA----------TAAATTTG--A-AT----GGTT-----T-TCACA---C-------T-GCT-AAAATCATC---------ATTGTACA-AC--G-TTTGTG--TTTCTTAATCGGATGAGTGTtaaataaacaaa
gi|20 : cgCGGTG-----GTATTCAGGACGCT-CTT--ATG-TGCC---TA-TTTATTGCGATAAAACAATGAAATTTA-CACATA--TTG--T----GCATTTTAT-ATTCTTA-TTATT-G-CG------TATGA-AATT----TAAA----------TGAA-TTG--A-AT----TGTG-----T-T---------------T-AT-----ATCACC---------ATTGCACA-TC--C-TTTGTG--TATCTAAATCGGTTGAATG
gi|21 : AAGCACCGATG-----GTATTCAGAACTAT-GTG--TTG-TGCC---CATTTTTTTGCGATATATCAATGGAATTTGTTACATA--TTA--T----GCGATTTGC-ATTGTTA-TCGTT-G-TG------TCTGA-AATA----TGTA----------T-----------------------------------------------TT-AAAATCATC---------ATTGTACA-AC--A-TTTGCG--
gi|22 : tcaatgttcgaattatacttTTATCCCCAGTAATGGCTCCTTTGGAGCATGTTTGTGATGAGCTCGGACGGCGGGACCGTG--CACGCGATACA-CCGTAAAGAAAAACGTCAAATA-TTTAGGCCACACCCC--CGCTCATG---AGTGGAAC------AACATT----CAACAAAGTTGTATAGCTAC--CGTAGT--------------GT
gi|23 : TCAATAAAGCAAACTGACCCTGA----CTGTCTTTATCATAT-TGATAA-----TGGCA-T-GCACGTCGCACACGTCGGCCGACTTCTCGCAAT---TC--TACAAACACCGTTCAAGTGATAGATTGGCCTTCATTGTTCCTAGA
gi|24 : tct-GCACATCGCGCACGGCGGACAACGGCTGACA-T---TT-AGACAAGCAATATTTAAGTGATGGATTGGCTCGCGTTGTTCCCAGATATGGCTCCTATTGAGTATATACGGGACAAG
gi|25 : ataACGACTGCTTACC-TAAATC-AGACAAACATCGTTCAGGTGATGGATTGACCGGCGTTATCCCCAGTTATGA----TCTTGAACGT
gi|26 : ttacacataaccaagtcagaaacATAATTTTTAATTG-T------------------ATT----TGAA----------TAAATTTG--A-AT----TGTG-----T-TAACA---C-------TAGTT---AATCATC---------CTTGTACA-AC--C-TTTGCG--TTTCTAAA--AGTTGAATGTtgttt
gi|27 : atAATGAAATTTG-TACATA--TCA--T----GCGTTTTATA--------TTG-C------------------------------------------ATTTG-----T----TGTG-----TATAAAA---T-------T---T-AAAATCTTC---------ATTATCCA-AC--C-ATTACT--TTTCTAAATCGGTTGAtcaattt
gi|28 : -T-G-TG------TATGA-AAAT----TGAA----------TGAACTTG--ATATGAAATGTG-----T-TAACA---C-------T-ATT-AAAATTATC---------ATTGTACA-ACATG-TTTGCG--TTTCTAAATCGGTTGAGT
gi|29 : aTCTGTTAAGAGAACTGACCTCCGTTGTCTGTCTTTATCA-ACTTGATAA-----TGCCTAT-ACACAACACGAACAGCAGACAACTGCTTA
gi|3 : aTACAAGGCTGTGTAGCTAC--CATAGT--------------ATTGTCTATGAGG-----TGTAGAAGTCTAGCCA-GTATTATGAGTG-GGGGA-T--CATGC-----AAACGGTATTAATTTGTGAATTTGGCATGAAGAACCGATG-----ATATCCAGAACAAT-G-T--ATGTTGCC---CA-TTTATTGCGACATATCAATGGAATTTG-CACAGA--TTG--T----GCATCTTAT-GTTGCTA-TTGTT-A-TA------TATGA-AATT----TAAA----------TAAATTC-------------TG-----T-TAACA---A-------T-GTTAAAAATTGTT---------GTTGTACA-AC--C-TTTGCA--CTTCTAAATCGATCGAGTGTt
gi|3 : TCTACTA-ACATGATAACTTGATGCCCCT-GCACATTGCAATTGGAGGATGACTGCTTACC-T---TC-AAACAAACAACATT---------GATTGGCCTGTGTGATCCCCAGACATTGCTCCTATAGAGCATGTCTGAGA----------------GT--GTG--CCCGTT-TGCCTTTGCCAAG--AAATGTCAGAGA-ATTACACCATGCCAT--cattaaccatgtgttagttcctgttgccaatgccctgcatgaagtgccatttcccacatgctggtgaaatctactaacatgataacttgatgcccctgcacattgcaattggaggatgactgcttaccttcaaacaaacaacattgattggcctgtgtgatccccagacattgctcctatagagcatgtctgagagtgtgcccgtttgcctttgccaagaaatgtcagagaattacaccatgccat
gi|30 : acactcgatcgatttagaagtgcaaaggttgtacaacaacaatttttaacattgttaacagaatttatttaaatttcatatataacaatagcaacataagatgcacaatctgtgcaaattccattgatatgtcgcaataaatgggcaacatacattgttctggatatcatcggttcttcatgccaaattcacaaattaataccgtttgcatgatcccccactcataatactggctagacttctacacctcatagacaatactatggtagctacacagccttgtacattaaccatgtgttagttcctgttgccaatgccctgcatgaagtgccatttcccacatgctggtgaaaTT----TGAA----------TAAATTTG--A-AT----TGTT-----T-TAACA---T-------T-GTT-AAATTCAGC---------ACTGTGCA-GA--C-ATTGCA--TTTCTAAATCGCTTAAGTGT
gi|32 : tACAGA--GTG--T----GCGTCT----GTTGTTG-TGG-T-GGTG------TATGA-CATT----TGAA----------AGAAATTG--A-AT----TGTG-----T-TA
gi|33 : GA-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----T-TAACA---C----------TT-AAAATCACC---------
gi|34 : ttagaaacga-T---TT-AGGCAAACAACGTTCAAGTGACGTACTGGTCCGTGTGGTCCCCAGACA
gi|35 : AGA-----CGTAGGTTTTTAGCCT-GTATTGCGAGTG-AGGA--T--CATGC-----ACGTGGTA
gi|36 : -AAAATCCTC---------ATTGTACA-AC--C-ATAAAG--TTTCTCAATCGGTTGGGTG
gi|37 : tgAAATCGTC---------ATTGTACA-AC--A-TTTGCG--TTTC-AAACCGGTCAAGTGT
gi|38 : tTGTTCCCAGACATGCCTTCAATTGAGCATGTCTGGGATGAG
gi|4 : TACATGGTTGTATAGCCAC--CATAGT--------------GGTGTATATGAGG-----TGTAGATGTCAAGCCT-GTATTGCAAGTG-GGGGA-T--CATAT-----ATGAGATATTAATTTGTGAATTTGACACAAAACACCGATA-----GTATTCAGGACATT-GTTAAAAG-AAGC---CA-TT--TTGTGA-ACAACAATGA
gi|4 : tacaaaacattccaTCTGCCA-AGGTGATAA-----TGCCCCTAGAATATCAAACATGGAGGACGACTGCTTACC-T---TT-AGACAAACAACGTTCAAGTGATGGATTGGCCTGTGTATTCTCCAGATACGGCTCCTTTTAAGCATGTCTGAGATGAGTTTGGTCAACAGGTCCATcattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaatctgccaaggtgataatgcccctagaatatcaaacatggaggacgactgcttacctttagacaaacaacgttcaagtgatggattggcctgtgtattctccagatacggctccttttaagcatgtctgagatgagtttggtcaacaggtccatcctttcttcataagtgcaacaacattccacaaggccatgtagctatcatagtgtgttccatgaggcatagatgtctagccagt
gi|4 : tacaaaacattccatcattgttgttcacaaaatggcttcttttaacaatgtcctgaatactatcggtgttttgtgtcaaattcacaaattaatatctcatatatgatcccccacttgcaatacaggcttgacatctacacctcatatacaccactatggtggctatacaaccatgtacattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaaGTCAA-CA-GGT---CCATCCTTT--C-TTCATA---AGTGCAAC------AACATT----CCACAAGGCCATGTAGCTAT--CATAGT--------------GTGTTCCATGAGG-----CATAGATGTCTAGCCA-GTcctttcttcataagtgcaacaacattccacaaggccatgtagctatcatagtgtgttccatgaggcatagatgtctagccagt
gi|5 : tacaaaacattccatcattgttgttcacaaaatggcttcttttaacaatgtcctgaatactatcggtgttttgtgtcaaattcacaaattaatatctcatatatgatcccccacttgcaatacaggcttgacatctacacctcatatacaccactatggtggctatacaaccatgtacattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaatctgccaaggtgataatgcccctagaatatcaaacatggaggacgactgcttacctttagacaaacaacgttcaagtgatggattggcctgtgtattctccagatacggctccttttaagcatgtctgagatgagtttgATTTATNNNNNNNNNNCGACACATCAATG-----ACATT--------T-GTT--GTA-TGCC---TA-TTTATTGCGACACATCGATGACATTTA-CACAGC--TTA--T----GCGTTTGAT-ATTGTTA-TTG-T---TGTTATTTTGTGA-AGTTGACATGAAACGCTGATGGTAATCTTGTTC-AG----TGTGAAATTT-TAATAAATCTTAATTGT-GTT-AACACTATCAAAATCAATATTATACA-AT--C-TTTGCG--TTCCTAAATCGGTTGAAT
gi|5 : taaaagatagcatcccaatatgaacatctAGT--------------GTCATCTATGAGG-----CGTGGATGTCTATCTT-ATATTGCGAATG---GAG-TAGCATAC-----ACGCGGTATTAATTTGTGAATTTGGCATGAACCACCGATG-----GTATTCATGACGTT-ATT--GTA-TACC---TA-TTTATTGCGACACATCAATGACATTTG-aggcatacaacaaatgtcattgatgtgtcgcaataaataggtatacaataacgtcatgaataccatcggtggttcatgccaaattcacaaattaataccgcgtgtatgctactccattcgcaatataagatagacatccacgcctcatagatgacact
gi|6 : taaaagatagcatcccaatatgaacatctattcaaccgatttaggaacgcaaagattgtataatattgattttgatagtgttaacacaattaagatttattaaaatttcacactgaacaagattaccatcagcgtttcatgtcaacttcacaaaataacaacaataacaatatcaaacgcataagctgtgtaaatgtcatcgatgtgtcgcaataaataggcatacaacaaatgtcattgatgtgtcgnnnnnnnnnnataaataggcatacaaTACATAGTCGTTTAGTTAC--TATAGTACCGTTTCTTTAGCGTCGTTTATGAAG-----CATAGATATCAAGTTT-GTAATGCAAG-------------A-AC-----ACGCGGTACTAATTTGTGAATTTGACATGGAGCACCAATG-----GTATTCAGGTCATT-GTA--ATA-TACCAAAGA-TTTAT---GGTGTATTTATGAAAATTG-CACTGA--TTA--T----GTGT----TAA-TGT-------T-G-TG------TATGA-AATC----TGCA----------TAAATTTG--A-AC----TGAG-----T-TAACA---C-------T-GTT-AAAATTACC---------ATTGTGCA-AC--C-TTTGCG--TTT-TATATCGGTTCAGTGT
gi|6 : -ACATGATAA-----TGTCCTT-GCATATCGCGCACGGAAGACGACTGCTTACC-T---TC-AGACAAACAACATTTTAGTGATGGCTTGccttaaatatatactagttgccgtgccagtgtttacatgctgatggaatttattcacatgataatgtccttgcatatcgcgcacggaagacgactgcttaccttcagacaaacaacattttagtgatggcttgcg
gi|7 : acactgaaccgatataaaacgcaaaggttgcacaatggtaattttaacagtgttaactcagttcaaatttatgcagatttcatacacaacattaacacataatcagtgcaattttcataaatacaccataaatctttggtatattacaatgacctgaataccattggtgctccatgtcaaattcacaaattagtaccgcgtgttcttgcattacaaacttgatatctatgcttcataaacgacgctaaagaaacggtactatagtaactaaacgactatgtaccttaaatatatactagttgccgtgccagtgtttacatgctgatggaatttattcGTCTAGCTAGTACATAGT--------------GTCATCCATGAGG-----CATATATGTCTAGCCA-GTATTGCGAGCG-AGATA-T--CATACAATACACGCGGTATTAACATGTGAATGTGACATGAAGCACTGATG-----ATATTCATGACAAT-GAT--ATG-TGTC---CC-TCTGTTGTGATGTATCAATGAAATTTG-CACAGG--TTA--T----GGGTTTTATAA-TGTTA-TTGTT-G-TG------TATG-------------------------------G--A-AT----TGTG-------------------------G-T-AAAATCATC---------ATTGTACAGGA--C-TTTGCA--TTTCTAAATTGGTTAAGTcg
gi|7 : --CATAGT--------------GTCATCCATGAGG-----CATAGATGTCTAGCTA-GTAatctatgcctcatggatgacactatgtactggctagacatnnnnnnnnnncctcatggatgacactatgtactggctagacatctatgcctcatggaacacactatgatagctacatggccttgtggaatgttgttgcacttatga
gi|7 : acttaaccaatttagaaatgcaaagtcctgtacaatgatgattttaccacaattccatacacaacaataacattataaaacccataacctgtgcaaatttcattgatacatcacaacagagggacacatatcattgtcatgaatatcatcagtgcttcatgtcacattcacatgttaataccgcgtgtattgtatgatatctcgctcgcaatactggctagacatatatgcctcatggatgacactatg--CATAGT--------------GTCATCCATGAGGNNNNNNNNNNATGTCTAGCCA-GTAtactggctagacatnnnnnnnnnncctcatggatgacactatgtactggctagacatctatgcctcatggaacacactatgatagctacatggccttgtggaatgttgttgcacttatga
gi|7 : acttaaccaatttagaaatgcaaagtcctgtacaatgatgattttaccacaattccatacacaacaataacattataaaacccataacctgtgcaaatttcattgatacatcacaacagagggacacatatcattgtcatgaatatcatcagtgcttcatgtcacattcacatgttaataccgcgtgtattgtatgatatctcgctcgcaatactggctagacatatatgcctcatggatgacactatgtactagctagacatctatgcctcatggatgacactatgTCATA---AGTGCAAC------AACATT----CCACAAGGCCATGTAGCTAT--CATAGT--------------GTGTTCCATGAGG-----CATAGATGTCTAGCCA-GTAtactggctagacatctatgcctcatggaacacactatgatagctacatggccttgtggaatgttgttgcacttatga
gi|8 : acttaaccaatttagaaatgcaaagtcctgtacaatgatgattttaccacaattccatacacaacaataacattataaaacccataacctgtgcaaatttcattgatacatcacaacagagggacacatatcattgtcatgaatatcatcagtgcttcatgtcacattcacatgttaataccgcgtgtattgtatgatatctcgctcgcaatactggctagacatatatgcctcatggatgacactatgtactagctagacatctatgcctcatggatgacactatgtactggctagacatnnnnnnnnnncctcatggatgacactatgTACAAGGTCGTATAGCTAC--CAACGT--------------GTCGATTATAAGT-----TTTAGATGACTAACCT-GTATTGTGAGTT-AGGA--T--TATAC-----ACACGGTACTAGTTTGTAAATTTGACATGAAGCACCGATT-----GTATTCGGGACGAC-GCC--ATG-TGCC---CA-TTTATTGCGATATATCAATGAAATTTG-AAAAGATGTTA--T------ATTTTGT-ATCGTTT-TTGAT-A-TG------TAAGA-AACT----TGAA----------T---TTT------T----TTTA-----T-TG--------------T-GTT-AACATCATC---------TTTGTACA-AC--A-TTTCCG--TTTCTAAACCGGTTATGTGT
gi|8 : tGTATCTATCA-ACATGATAA-----TGCACCT-GTACATCGCGTACGGCGAACGACTGCTTAAC-T---tattagcgatgtgctagtatccgatgccatccatgaagcgccattgatttacttaccggtagtatctatcaacatgataatgcacctgtacatcgcgtacggcgaacgactgcttaact
gi|9 : tacacataaccggtttagaaacggaaatgttgtacaaagatgatgttaacacaataaaaaaaattcaagtttcttacatatcaaaaacgatacaaaatataacatcttttcaaatttcattgatatatcgcaataaatgggcacatggcgtcgtcccgaatacaatcggtgcttcatgtcaaatttacaaactagtaccgtgtgtataatcctaactcacaatacaggttagtcatctaaaacttataatcgacacgttggtagctatacgaccttgtatattagcgatgtgctagtatccgatgccatccatgaagcgccattgatttacttaccggtaCGTATATTTAC--AAAAAT--------------TTCGTTTGTGA-------------TGTCTAGCCT-GTATTGCAAGTT-TTGGA-C--CATGT-----ACGTGGTAGTATTTTGTGAATTTGACATGAAGCCCCGATG-----ATATTCAGGACGTT-GAT--TTG-TGTT---CA-TTTATTACGGTAAATCATTAAAA--------AGG--TTA--T----GCGTTTT-TTTTTGTAA-TTGTT-G-TG------TAGGT-AATT----TAAA----------TAAATTTG--A----------G-----A-TAATA---C-------T-GCT-----TTATT---------GTTGTA-A-AC--
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|31 ): TTAGATGTACGGCACATGGTAATTTACATATTCGGACGACCGTTTCGCGACCGTAAAGCAC
Alignments
lowQualScore : 2222 11111 11 111 111 111111 1111 11111111111111 2222222222 22
lowQualScore : 1 1 8888 4 3 11111 1 4 0 2 3 666 4 3 1 3 1 11 8 000 1 5 1 77 1 77 2 0 000 6 999999 4444 1 33 33333333333333 55555 1 55 1111111111 88888 55555 0 2 22 2 555 0 2 22 22 4444 55 3333 1 3333 7777777777 333 1 3333 44444 333 7777777 1 666666666 1 22 1 22
lowQualScore : . . .... . . ..... . . . . . ... . . . . . .. . ... . . . .. . .. . . ... . ...... .... . .. .............. ..... . .. .......... ..... ..... . . .. . ... . . .. .. .... .. .... . .... .......... ... . .... ..... ... ....... . ......... . .. . ..
lowQualScore : 0 0 3333 4 9 11111 9 0 5 5 6 444 0 7 0 3 0 00 0 222 0 7 0 33 6 99 5 1 000 6 222222 2222 9 77 88888888888888 99999 1 22 8888888888 33333 66666 2 1 99 1 888 1 0 88 88 2222 00 9999 7 5555 3333333333 777 7 5555 22222 000 4444444 7 777777777 7 33 7 44
consensus : NNTCAGTNAAGAGAACTGACCTCNA----CTGTCTCTACCA-ACATGATAA-----TGCCCCT-GCACATCGCGCACGGCGGACGACTGCTTACC-T---TC-AGACAAACAACGTTCAAGTGATGGATTGGCCCGCGTTGTCCCCAGACATGGCTCCTNTTGAGCATGTCTGGGATGAGCTCGGNCGGCGGGTCCGTG--CACGCG-TGCCTCCGCCAAG--AAACGTCAAANA-GNTACGCCACGCCAT--CGTTCATG---AGTGNAAC------AACATT----CTACAAGGTCGTATAGCTAC--CATAGT--------------GTCGTCCATGAGG-----CGTAGATGTCTAGCCN-GTATTGCGAGTG-AGGAG-T--CATAC-----ACGCGGTATTAATTTGTGAATTTGACATGAAGCACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCCCA---TTTATTGCGATATATCAATGAAATTTG-CACAGA--TTA--T----GCGTTTTAT-ATTGTTATTGTTG----TGTATGA-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----TTAACA---CT-------GTT-AAAATCATCA---------TTGTACA-AC--C-TTTGCG--TTTCTAAATCGGTTGAGTGT
Reference ( family-88 ) : NNTCAGTNAAGAGAACTGACCTCNA----CTGTCTCTACCA-ACATGATAA-----TGCCCCT-GCACATCGCGCACGGCGGACGACTGCTTACC-T---TC-AGACAAACAACGTTCAAGTGATGGATTGGCCCGCGTTGTCCCCAGACATGGCTCCTNTTGAGCATGTCTGGGATGAGCTCGGNCGGCGGGTCCGTG--CACGCG-TGCCTCCGCCAAG--AAACGTCAAANA-GNTACGCCACGCCAT--CGTTCATG---AGTGNAAC------AACATT----CTACAAGGTCGTATAGCTAC--CATAGT--------------GTCGTCCATGAGG-----CGTAGATGTCTAGCCN-GTATTGCGAGTG-AGGAG-T--CATAC-----ACGCGGTATTAATTTGTGAATTTGACATGAAGCACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCCCA---TTTATTGCGATATATCAATGAAATTTG-CACAGA--TTA--T----GCGTTTTATAATTGTTATTGTTG----TGTATGA-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----TTAACA---CT-------GTT-AAAATCATCA---------TTGTACA-AC--C-TTTGCG--TTTCTAAATCGGTTGAGTGT
gi|1 : TACAAGGTCGTATAGCCAT--CATATT--------------GTCGTTTATGACG-----CAAAGAT--------------TGCGAGTG-GGGA------ATA------ACGTAGTATT-----GTGAATTTGACACGAAACACCGATG-----GTATTCAGGACGTTTATT--ATA-TGCCCA---TTTATTGCGATATATGAATGAAATTTG-CACAGA--TTA--T----GCGTTTAATA-TTGTTATTGTTG----TGTATGA-CATT----TAAA----------AAAGATTG--A-GT----TGTA-----TTAACA---CT-------G------------------------ATACA-AT--C-TTTGCG--TTTGT-AGTCGGTTGAGTGT
gi|1 : tTCTACAG-ACATGGTAA-----TTTGCCT-GCAC------------GGACGACTGTTTACG-A---TCTAGTGAAGCACCGTTCAAGTGATGGAATGGCCCGCGTTGTCCCCAGACATGGCTCTAGTTAAGCATGTCTGGGATGAGCTCGGGCGACGAGTCTTTG--CACGTG-TGACTCCGCCAAG--AAACGTTACAAA-GTTA--CTACCCCATGCCCTTCTTG---A-TG--------------------CCACACGCTCGCATAGCTTC--CATGGT--------------ATCGTTTATGAGcattaacgatgtgctaattcccgttgccatgccagtcatgaggcgccatttttacctgctggttagatctacagacatggtaatttgcctgcacggacgactgtttacgatctagtgaagcaccgttcaagtgatggaatggcccgcgttgtccccagacatggctctagttaagcatgtctgggatgagctcgggcgacgagtctttgcacgtgtgactccgccaagaaacgttacaaagttactaccccatgcccttcttgatgccacacgctcgcatagcttccatggtatcgtttatgag
gi|10 : tacactcaaccgactacaaacgcaaagattgtatcagtgttaatacaactcaatcttttttaaatgtcatacacaacaataacaatattaaacgcataatctgtgcaaatttcattcatatatcgcaataaatgggcatataataaacgtcctgaataccatcggtgtttcgtgtcaaattcacaatactacgttattccccactcgcaatctttgcgtcataaacgacaatatgatggctatacgaccttgtacattaacgatgtgctaattcccgttgccatgccagtcatgaggcgccatttttacctgctggttagaT--------------GTTGTACATAAGG-----CATAGCTGTCAAG--------TG-----G-AGGA--T--TATAC-----AAGCGGTATTAATTTGCGAGTTTGACATGAAGAGCCAATG-----GTATTCAGGACATT-GTT--ATG-TGCCCA---TTTATGGCGATTTATCAATGAAATTTG-TACAGA--TTG--T----GTG-TTTAT-ATGGTTATTGTTG----TGTATAA-AATT----CTAA----------TTAATTCT--A-TT----TGTG-----TTAACA---CT-------GTT-AAAATCATCA---------TTGTACA-AC--C-TTTGCG--TTTCTTGATCCGTTTAGTG
gi|11 : gG-----CGTAGATGTTT-GCCGTGTATTGCGAGTG--GGAGAT--CATGC-----ACGTGGCATTAATTTGTGAATTTGATATGAAACACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCCTA---TTTAGTGCGATATATCAATAAAACTAG-CACAGG--TTA--T----GTGTTTGAT-ATTGTTATTGTTA----TGTATGG-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----TAAACA---CT-------GTT-AAAATTATCA---------TTGTACA-A-----TTTG-------TTAAATCGAT--AATGT
gi|12 : cATGAAACTTA-CACATA--TTA--T----GTATTTTATA----TTATTATTG----TGTGTAA-AATT----AAAA----------CAAAAATG--A-AT----TGTA-----TTAACA---CT-------GTC-AAAATCATCA---------TTGTACA-AC--C-TGTGAA--TTTCTAAATTGGTTAAG
gi|13 : TTGTGATTTTGACATGAAG-ACCGGTG-----ATATTCAGGAGGAT-GTG--TTG-TGTCCA---TTTATTGCGATA---------AATTTG-CACGGA--TTA--T----GCGTTTTATA-TTGTTATTGTTG----TGCATAA-AATT----TGAA----------TACATTTA--A-AT----GGTG-----TTAACA---CT-------GTT-GAAATCAACA---------TTGTACA-AC--C-TCTGCG--TTTCTAAATCGGTCGAGTGagcgcactgaggatgacttatatgttacttacatctcattatatgttaccaatatctcattatatgtta
gi|14 : GCAACGCTG-----ATATTCAGGAGGT--GTT--TTG-TGCCCA---TTTATTGCGGTATTTCAAAGACATTTG-CACAGA--TTA--TAATTGCGTTTCATA-TTGTTATTGTTG----TGTATGA-AATT----TAAA----------TAAATTTG--A-AT----CGTG-----TCAACA---CT-------GTT-AAAATTATCA---------TTGTACA-AC--CTTTTGTG--TTTCTTAACCAGTTTAGTGT
gi|15 : ATAATGCACCGATGGGATGGTATTCAGGACATT-GTT--ACG-CGCCCA---TTTATTGTGATATGTCAATGAAATTTT-GAAAAG--TTA--T----ACGTTTTAT-ATTGCAATTGTTA----TGTATGAGAATT----T-AA----------TAAATTTA--A-AC----TG-----------------T-------GTT-AAAATCATCA---------TTGTATA-AC--C-TTTACG--TTTCTAAATCGGTTGAGTGT
gi|16 : AGCACCAATG-----GTATTCAGGACATT-GTT--GTG-TGTCCT---TTTATTGTGATATATCAATGAAATATC-CACAGA--GTA--T----------TATG-TTGTTATTATTG----TGCATGA-ATAT----TGAA----------TAAATTTA--A-AT----TGTG-----TTAACA---CT-------GTT-AAAATCCTCA---------TTGTATA-AC--C-TATGCG--TTTCTAAGTCGGTTGAGTGT
gi|17 : TCCGCCAG----AACATGGAAAATGGCACCTCACGA-AT--GGT--ATGGCAAATGAAACTAACACAACGTTAATGC-ACAAGGTTGTATAGCTAC--CATAGT--------------ATCATTCATAAGC-----CATAAATGTa
gi|17 : ttcctcTCTACCA-ACATGATAA-----TACACCT-TCATATCGCACATGGAGGATGACTGCCTACC-T---atctaccaacatgataatacaccttcatatcgcacatggaggatgactgcctacct
gi|18 : ttcctcacatttatggcttatgaatgatactatggtagctatacaaccttgtgcattaacgttgtgttagtttcatttgccataccattcgtgaggtgccattttccatgttctggcggaaTCAAGACATT------ATG-TGCCCA---TTTATTGCGATATATCAAT-------------AA--TTG--T----GCGTTTT----TTGTTATTGCGG----TGTA------------TGAA----------TATATTTC--C-AT----TGCG-----TGAACA---CT-------GTT-TAAATCATCA---------TTGTACA-AC--A-TTTGCGATTTTATAAAGCGGTTGAATGT
gi|19 : -AGACAAACAACGTTCAAGTGACGTATTGGTCAGTGTGATCCCCAGATATCACTCTTATGGAGCATGTCTTGGATGAGCTCGGCCCGCGGTTCCGTGCACACACG-TGCCTCCGCCAAG--AAACGTCAAATA-AAAACGCCATGTCCT--CGTTGATT---CGTGAAtaaatccacaaataaatacttctgcca
gi|2 : TCAGTGAAGAGAACTGACCTCTA----CTGTCTTTATAA-ACTTGATAA-----TGCCCTT-ACACATCGCACACGGCGGCCGACTGTTTATT-G---TC-ATACAAACAACGTTCAAGTGATGGATTGGCCAGCACTGTCCCAAGACACGACTCCTTTTGAACATGTCTGAGATGGATTCGAACGGCGGGTCCGTG--CACGCG-CGCATCCGCCAAA--ACATGTCAGAGA-GATACGCCACGTCAT--CGTCCATG---AGTGGGAC------AACATT----CTACAAAGTCGTATAGCTAT--CATAGT--------------GTCGTCTA-GAAG-----TGTATACCTCGAGTCA-GTATTGCGAATGTAGGGGCT--CATAC-----ACGCGGTAT---TTTGTGAATTTGACATTAAGCACCGATG-----GTATTCAGGACATT-GTT--ATG-TTCCCA---TTTATTGCGATAAGTCAATGAAATGTG-CACAGT--TTATTT----CTTTTTTAAAATTTTTTTTG-TG----TGTACGA-AATT----TGAA----------TAAATTTG--A-AT----GGTT-----TTCACA---CT-------GCT-AAAATCATCA---------TTGTACA-AC--G-TTTGTG--TTTCTTAATCGGATGAGTGTtaaataaacaaa
gi|20 : cgCGGTG-----GTATTCAGGACGCT-CTT--ATG-TGCCTA---TTTATTGCGATAAAACAATGAAATTTA-CACATA--TTG--T----GCATTTTAT-ATTCTTATTATTG----CGTATGA-AATT----TAAA----------TGAA-TTG--A-AT----TGTG-----TT--------T-------AT-----ATCACCA---------TTGCACA-TC--C-TTTGTG--TATCTAAATCGGTTGAATG
gi|21 : AAGCACCGATG-----GTATTCAGAACTAT-GTG--TTG-TGCCCAT--TTTTTTGCGATATATCAATGGAATTTGTTACATA--TTA--T----GCGATTTGC-ATTGTTATCGTTG----TGTCTGA-AATA----TGTA----------T---------------------------------------------TT-AAAATCATCA---------TTGTACA-AC--A-TTTGCG--
gi|22 : tcaatgttcgaattatacttTTATCCCCAGTAATGGCTCCTTTGGAGCATGTTTGTGATGAGCTCGGACGGCGGGACCGTG--CACGCGATACA-CCGTAAAGAAAAACGTCAAATA-TTTAGGCCACACCCC--CGCTCATG---AGTGGAAC------AACATT----CAACAAAGTTGTATAGCTAC--CGTAGT--------------GT
gi|23 : TCAATAAAGCAAACTGACCCTGA----CTGTCTTTATCATAT-TGATAA-----TGGCA-T-GCACGTCGCACACGTCGGCCGACTTCTCGCAAT---TC--TACAAACACCGTTCAAGTGATAGATTGGCCTTCATTGTTCCTAGA
gi|24 : tct-GCACATCGCGCACGGCGGACAACGGCTGACA-T---TT-AGACAAGCAATATTTAAGTGATGGATTGGCTCGCGTTGTTCCCAGATATGGCTCCTATTGAGTATATACGGGACAAG
gi|25 : ataACGACTGCTTACC-TAAATC-AGACAAACATCGTTCAGGTGATGGATTGACCGGCGTTATCCCCAGTTATGA----TCTTGAACGT
gi|26 : ttacacataaccaagtcagaaacATAATTTTTA--ATTG----T--------ATT----TGAA----------TAAATTTG--A-AT----TGTG-----TTAACA---CTA------GTT---AATCATCC---------TTGTACA-AC--C-TTTGCG--TTTCTAAA--AGTTGAATGTtgttt
gi|27 : atAATGAAATTTG-TACATA--TCA--T----GCGTTTTAT-ATTGCATTTGTTG----TGTATAA-AATT----TA-------------AAATCT----------------------------------------------TCATTA---------TC---CA-AC--C-ATTACT--TTTCTAAATCGGTTGAtcaattt
gi|28 : TG----TGTATGA-AAAT----TGAA----------TGAACTTG--ATATGAAATGTG-----TTAACA---CT-------ATT-AAAATTATCA---------TTGTACA-ACATG-TTTGCG--TTTCTAAATCGGTTGAGT
gi|29 : aTCTGTTAAGAGAACTGACCTCCGTTGTCTGTCTTTATCA-ACTTGATAA-----TGCCTAT-ACACAACACGAACAGCAGACAACTGCTTA
gi|3 : aTACAAGGCTGTGTAGCTAC--CATAGT--------------ATTGTCTATGAGG-----TGTAGAAGTCTAGCCA-GTATTATGAGTG-GGGGA-T--CATGC-----AAACGGTATTAATTTGTGAATTTGGCATGAAGAACCGATG-----ATATCCAGAACAAT-G-T--ATGTTGCCCA---TTTATTGCGACATATCAATGGAATTTG-CACAGA--TTG--T----GCATCTTAT-GTTGCTATTGTTA----TATATGA-AATT----TAAA----------TAAATTC-------------TG-----TTAACA---AT-------GTTAAAAATTGTTG---------TTGTACA-AC--C-TTTGCA--CTTCTAAATCGATCGAGTGTt
gi|3 : TCTACTA-ACATGATAACTTGATGCCCCT-GCACATTGCAATTGGAGGATGACTGCTTACC-T---TC-AAACAAACAACATT---------GATTGGCCTGTGTGATCCCCAGACATTGCTCCTATAGAGCATGTCTGAGA----------------GT--GTG--CCCGTT-TGCCTTTGCCAAG--AAATGTCAGAGA-ATTACACCATGCCAT--cattaaccatgtgttagttcctgttgccaatgccctgcatgaagtgccatttcccacatgctggtgaaatctactaacatgataacttgatgcccctgcacattgcaattggaggatgactgcttaccttcaaacaaacaacattgattggcctgtgtgatccccagacattgctcctatagagcatgtctgagagtgtgcccgtttgcctttgccaagaaatgtcagagaattacaccatgccat
gi|30 : acactcgatcgatttagaagtgcaaaggttgtacaacaacaatttttaacattgttaacagaatttatttaaatttcatatataacaatagcaacataagatgcacaatctgtgcaaattccattgatatgtcgcaataaatgggcaacatacattgttctggatatcatcggttcttcatgccaaattcacaaattaataccgtttgcatgatcccccactcataatactggctagacttctacacctcatagacaatactatggtagctacacagccttgtacattaaccatgtgttagttcctgttgccaatgccctgcatgaagtgccatttcccacatgctggtgaaaTT----TGAA----------TAAATTTG--A-AT----TGTT-----TTAACA---TT-------GTT-AAATTCAGCA---------CTGTGCA-GA--C-ATTGCA--TTTCTAAATCGCTTAAGTGT
gi|32 : tACAGA--GTG--T----GCGTCT----GTTGTTGTGGTGG----TGTATGA-CATT----TGAA----------AGAAATTG--A-AT----TGTG-----TTA
gi|33 : GA-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----TTAACA---C---------TT-AAAATCACC
gi|34 : ttagaaacga-T---TT-AGGCAAACAACGTTCAAGTGACGTACTGGTCCGTGTGGTCCCCAGACA
gi|35 : AGA-----CGTAGGTTTTTAGCCT-GTATTGCGAGTG-AGGA--T--CATGC-----ACGTGGTA
gi|36 : -AAAATCCTCA---------TTGTACA-AC--C-ATAAAG--TTTCTCAATCGGTTGGGTG
gi|37 : tgAAATCGTCA---------TTGTACA-AC--A-TTTGCG--TTTC-AAACCGGTCAAGTGT
gi|38 : tTGTTCCCAGACATGCCTTCAATTGAGCATGTCTGGGATGAG
gi|4 : TACATGGTTGTATAGCCAC--CATAGT--------------GGTGTATATGAGG-----TGTAGATGTCAAGCCT-GTATTGCAAGTG-GGGGA-T--CATAT-----ATGAGATATTAATTTGTGAATTTGACACAAAACACCGATA-----GTATTCAGGACATT-GTTAAAAG-AAGCCA---TT--TTGTGA-ACAACAATGA
gi|4 : tacaaaacattccaTCTGCCA-AGGTGATAA-----TGCCCCTAGAATATCAAACATGGAGGACGACTGCTTACC-T---TT-AGACAAACAACGTTCAAGTGATGGATTGGCCTGTGTATTCTCCAGATACGGCTCCTTTTAAGCATGTCTGAGATGAGTTTGGTCAACAGGTCCATcattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaatctgccaaggtgataatgcccctagaatatcaaacatggaggacgactgcttacctttagacaaacaacgttcaagtgatggattggcctgtgtattctccagatacggctccttttaagcatgtctgagatgagtttggtcaacaggtccatcctttcttcataagtgcaacaacattccacaaggccatgtagctatcatagtgtgttccatgaggcatagatgtctagccagt
gi|4 : tacaaaacattccatcattgttgttcacaaaatggcttcttttaacaatgtcctgaatactatcggtgttttgtgtcaaattcacaaattaatatctcatatatgatcccccacttgcaatacaggcttgacatctacacctcatatacaccactatggtggctatacaaccatgtacattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaaGTCAA-CA-GGT---CCATCCTTT--C-TTCATA---AGTGCAAC------AACATT----CCACAAGGCCATGTAGCTAT--CATAGT--------------GTGTTCCATGAGG-----CATAGATGTCTAGCCA-GTcctttcttcataagtgcaacaacattccacaaggccatgtagctatcatagtgtgttccatgaggcatagatgtctagccagt
gi|5 : tacaaaacattccatcattgttgttcacaaaatggcttcttttaacaatgtcctgaatactatcggtgttttgtgtcaaattcacaaattaatatctcatatatgatcccccacttgcaatacaggcttgacatctacacctcatatacaccactatggtggctatacaaccatgtacattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaatctgccaaggtgataatgcccctagaatatcaaacatggaggacgactgcttacctttagacaaacaacgttcaagtgatggattggcctgtgtattctccagatacggctccttttaagcatgtctgagatgagtttgATTTATNNNNNNNNNNCGACACATCAATG-----ACATT--------T-GTT--GTA-TGCCTA---TTTATTGCGACACATCGATGACATTTA-CACAGC--TTA--T----GCGTTTGAT-ATTGTTATTGTTGTTATTTTGTGA-AGTTGACATGAAACGCTGATGGTAATCTTGTTC-AG----TGTGAAATTTTAATAAATCTTAATTGTGTT-AACACTATCAAAATCAATATTATACA-AT--C-TTTGCG--TTCCTAAATCGGTTGAAT
gi|5 : taaaagatagcatcccaatatgaacatctAGT--------------GTCATCTATGAGG-----CGTGGATGTCTATCTT-ATATTGCGAATG---GAG-TAGCATAC-----ACGCGGTATTAATTTGTGAATTTGGCATGAACCACCGATG-----GTATTCATGACGTT-ATT--GTA-TACCTA---TTTATTGCGACACATCAATGACATTTG-aggcatacaacaaatgtcattgatgtgtcgcaataaataggtatacaataacgtcatgaataccatcggtggttcatgccaaattcacaaattaataccgcgtgtatgctactccattcgcaatataagatagacatccacgcctcatagatgacact
gi|6 : taaaagatagcatcccaatatgaacatctattcaaccgatttaggaacgcaaagattgtataatattgattttgatagtgttaacacaattaagatttattaaaatttcacactgaacaagattaccatcagcgtttcatgtcaacttcacaaaataacaacaataacaatatcaaacgcataagctgtgtaaatgtcatcgatgtgtcgcaataaataggcatacaacaaatgtcattgatgtgtcgnnnnnnnnnnataaataggcatacaaTACATAGTCGTTTAGTTAC--TATAGTACCGTTTCTTTAGCGTCGTTTATGAAG-----CATAGATATCAAGTTT-GTAATGCAAG-------------A-AC-----ACGCGGTACTAATTTGTGAATTTGACATGGAGCACCAATG-----GTATTCAGGTCATT-GTA--ATA-TACCAAAGATTTAT---GGTGTATTTATGAAAATTG-CACTGA--TTA--T----G-----------TGTTAATGTTG----TGTATGA-AATC----TGCA----------TAAATTTG--A-AC----TGAG-----TTAACA---CT-------GTT-AAAATTACCA---------TTGTGCA-AC--C-TTTGCG--TTT-TATATCGGTTCAGTGT
gi|6 : -ACATGATAA-----TGTCCTT-GCATATCGCGCACGGAAGACGACTGCTTACC-T---TC-AGACAAACAACATTTTAGTGATGGCTTGccttaaatatatactagttgccgtgccagtgtttacatgctgatggaatttattcacatgataatgtccttgcatatcgcgcacggaagacgactgcttaccttcagacaaacaacattttagtgatggcttgcg
gi|7 : acactgaaccgatataaaacgcaaaggttgcacaatggtaattttaacagtgttaactcagttcaaatttatgcagatttcatacacaacattaacacataatcagtgcaattttcataaatacaccataaatctttggtatattacaatgacctgaataccattggtgctccatgtcaaattcacaaattagtaccgcgtgttcttgcattacaaacttgatatctatgcttcataaacgacgctaaagaaacggtactatagtaactaaacgactatgtaccttaaatatatactagttgccgtgccagtgtttacatgctgatggaatttattcGTCTAGCTAGTACATAGT--------------GTCATCCATGAGG-----CATATATGTCTAGCCA-GTATTGCGAGCG-AGATA-T--CATACAATACACGCGGTATTAACATGTGAATGTGACATGAAGCACTGATG-----ATATTCATGACAAT-GAT--ATG-TGTCCC---TCTGTTGTGATGTATCAATGAAATTTG-CACAGG--TTA--T----GGGTTTTATAA-TGTTATTGTTG----TGTATG-------------------------------G--A-AT----TGTG-----------------------G-T-AAAATCATCA---------TTGTACAGGA--C-TTTGCA--TTTCTAAATTGGTTAAGTcg
gi|7 : --CATAGT--------------GTCATCCATGAGG-----CATAGATGTCTAGCTA-GTAatctatgcctcatggatgacactatgtactggctagacatnnnnnnnnnncctcatggatgacactatgtactggctagacatctatgcctcatggaacacactatgatagctacatggccttgtggaatgttgttgcacttatga
gi|7 : acttaaccaatttagaaatgcaaagtcctgtacaatgatgattttaccacaattccatacacaacaataacattataaaacccataacctgtgcaaatttcattgatacatcacaacagagggacacatatcattgtcatgaatatcatcagtgcttcatgtcacattcacatgttaataccgcgtgtattgtatgatatctcgctcgcaatactggctagacatatatgcctcatggatgacactatg--CATAGT--------------GTCATCCATGAGGNNNNNNNNNNATGTCTAGCCA-GTAtactggctagacatnnnnnnnnnncctcatggatgacactatgtactggctagacatctatgcctcatggaacacactatgatagctacatggccttgtggaatgttgttgcacttatga
gi|7 : acttaaccaatttagaaatgcaaagtcctgtacaatgatgattttaccacaattccatacacaacaataacattataaaacccataacctgtgcaaatttcattgatacatcacaacagagggacacatatcattgtcatgaatatcatcagtgcttcatgtcacattcacatgttaataccgcgtgtattgtatgatatctcgctcgcaatactggctagacatatatgcctcatggatgacactatgtactagctagacatctatgcctcatggatgacactatgTCATA---AGTGCAAC------AACATT----CCACAAGGCCATGTAGCTAT--CATAGT--------------GTGTTCCATGAGG-----CATAGATGTCTAGCCA-GTAtactggctagacatctatgcctcatggaacacactatgatagctacatggccttgtggaatgttgttgcacttatga
gi|8 : acttaaccaatttagaaatgcaaagtcctgtacaatgatgattttaccacaattccatacacaacaataacattataaaacccataacctgtgcaaatttcattgatacatcacaacagagggacacatatcattgtcatgaatatcatcagtgcttcatgtcacattcacatgttaataccgcgtgtattgtatgatatctcgctcgcaatactggctagacatatatgcctcatggatgacactatgtactagctagacatctatgcctcatggatgacactatgtactggctagacatnnnnnnnnnncctcatggatgacactatgTACAAGGTCGTATAGCTAC--CAACGT--------------GTCGATTATAAGT-----TTTAGATGACTAACCT-GTATTGTGAGTT-AGGA--T--TATAC-----ACACGGTACTAGTTTGTAAATTTGACATGAAGCACCGATT-----GTATTCGGGACGAC-GCC--ATG-TGCCCA---TTTATTGCGATATATCAATGAAATTTG-AAAAGATGTTA--T------ATTTTGT-ATCGTTTTTGATA----TGTAAGA-AACT----TGAA----------T---TTT------T----TTTA-----TTG-------T-------GTT-AACATCATCT---------TTGTACA-AC--A-TTTCCG--TTTCTAAACCGGTTATGTGT
gi|8 : tGTATCTATCA-ACATGATAA-----TGCACCT-GTACATCGCGTACGGCGAACGACTGCTTAAC-T---tattagcgatgtgctagtatccgatgccatccatgaagcgccattgatttacttaccggtagtatctatcaacatgataatgcacctgtacatcgcgtacggcgaacgactgcttaact
gi|9 : tacacataaccggtttagaaacggaaatgttgtacaaagatgatgttaacacaataaaaaaaattcaagtttcttacatatcaaaaacgatacaaaatataacatcttttcaaatttcattgatatatcgcaataaatgggcacatggcgtcgtcccgaatacaatcggtgcttcatgtcaaatttacaaactagtaccgtgtgtataatcctaactcacaatacaggttagtcatctaaaacttataatcgacacgttggtagctatacgaccttgtatattagcgatgtgctagtatccgatgccatccatgaagcgccattgatttacttaccggtaCGTATATTTAC--AAAAAT--------------TTCGTTTGTGA-------------TGTCTAGCCT-GTATTGCAAGTT-TTGGA-C--CATGT-----ACGTGGTAGTATTTTGTGAATTTGACATGAAGCCCCGATG-----ATATTCAGGACGTT-GAT--TTG-TGTTCA---TTTATTACGGTAAATCATTAAAA--------AGG--TTA--T----GCGTTTT-TTTTTGTAATTGTTG----TGTAGGT-AATT----TAAA----------TAAATTTG--A----------G-----ATAATA---CT-------GCT-----TTATTG---------TTGTA-A-AC--
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|31 ): TTAGATGTACGGCACATGGTAATTTACATATTCGGACGACCGTTTCGCGACCGTAAAGCAC
Alignments
lowQualScore : 2222 11111 11 111 111 111111 1111 11111111111111 2222222222
lowQualScore : 1 1 8888 4 3 11111 1 4 0 2 3 666 4 3 1 3 1 11 8 000 1 5 1 77 1 77 2 0 000 6 999999 4444 1 33 33333333333333 55555 1 55 1111111111 88888 55555 0 2 22 2 555 0 2 22 4444 333 4444 1 3333 7777777777 333 1 3333 44444 333 7777777 1 666666666 1 22 1 22
lowQualScore : . . .... . . ..... . . . . . ... . . . . . .. . ... . . . .. . .. . . ... . ...... .... . .. .............. ..... . .. .......... ..... ..... . . .. . ... . . .. .... ... .... . .... .......... ... . .... ..... ... ....... . ......... . .. . ..
lowQualScore : 0 0 3333 4 9 11111 9 0 5 5 6 444 0 7 0 3 0 00 0 222 0 7 0 33 6 99 5 1 000 6 222222 2222 9 77 88888888888888 99999 1 55 8888888888 33333 66666 2 1 99 1 888 1 0 88 2222 555 0000 8 5555 3333333333 777 7 5555 22222 000 4444444 7 777777777 7 33 7 44
consensus : NNTCAGTNAAGAGAACTGACCTCNA----CTGTCTCTACCA-ACATGATAA-----TGCCCCT-GCACATCGCGCACGGCGGACGACTGCTTACC-T---TC-AGACAAACAACGTTCAAGTGATGGATTGGCCCGCGTTGTCCCCAGACATGGCTCCTNTTGAGCATGTCTGGGATGAGCTCGGNCGGCGGGTCCGTG--CACGCG-TGCCTCCGCCAAG--AAACGTCAAANA-GNTACGCCACGCCAT--CGTTCATG---AGTGNAAC------AACATT----CTACAAGGTCGTATAGCTAC--CATAGT--------------GTCGTCCATGAGG-----CGTAGATGTCTAGCCN-GTATTGCGAGTG-AGGAG-T--CATAC-----ACGCGGTATTAATTTGTGAATTTGACATGAAGCACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCCCA---TTTATTGCGATATATCAATGAAATTTG-CACAGA--TTAT----GCGTTTT---ATATTGTTATTGTTG----TGTATGA-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----TTAACA---CT-------GTT-AAAATCATCA---------TTGTACA-AC--C-TTTGCG--TTTCTAAATCGGTTGAGTGT
Reference ( family-88 ) : NNTCAGTNAAGAGAACTGACCTCNA----CTGTCTCTACCA-ACATGATAA-----TGCCCCT-GCACATCGCGCACGGCGGACGACTGCTTACC-T---TC-AGACAAACAACGTTCAAGTGATGGATTGGCCCGCGTTGTCCCCAGACATGGCTCCTNTTGAGCATGTCTGGGATGAGCTCGGNCGGCGGGTCCGTG--CACGCG-TGCCTCCGCCAAG--AAACGTCAAANA-GNTACGCCACGCCAT--CGTTCATG---AGTGNAAC------AACATT----CTACAAGGTCGTATAGCTAC--CATAGT--------------GTCGTCCATGAGG-----CGTAGATGTCTAGCCN-GTATTGCGAGTG-AGGAG-T--CATAC-----ACGCGGTATTAATTTGTGAATTTGACATGAAGCACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCCCA---TTTATTGCGATATATCAATGAAATTTG-CACAGA--TTAT----GCGTTTT---ATATTGTTATTGTTG----TGTATGA-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----TTAACA---CT-------GTT-AAAATCATCA---------TTGTACA-AC--C-TTTGCG--TTTCTAAATCGGTTGAGTGT
gi|1 : TACAAGGTCGTATAGCCAT--CATATT--------------GTCGTTTATGACG-----CAAAGAT--------------TGCGAGTG-GGGA------ATA------ACGTAGTATT-----GTGAATTTGACACGAAACACCGATG-----GTATTCAGGACGTTTATT--ATA-TGCCCA---TTTATTGCGATATATGAATGAAATTTG-CACAGA--TTAT----GCGTTTA---ATATTGTTATTGTTG----TGTATGA-CATT----TAAA----------AAAGATTG--A-GT----TGTA-----TTAACA---CT-------G------------------------ATACA-AT--C-TTTGCG--TTTGT-AGTCGGTTGAGTGT
gi|1 : tTCTACAG-ACATGGTAA-----TTTGCCT-GCAC------------GGACGACTGTTTACG-A---TCTAGTGAAGCACCGTTCAAGTGATGGAATGGCCCGCGTTGTCCCCAGACATGGCTCTAGTTAAGCATGTCTGGGATGAGCTCGGGCGACGAGTCTTTG--CACGTG-TGACTCCGCCAAG--AAACGTTACAAA-GTTA--CTACCCCATGCCCTTCTTG---A-TG--------------------CCACACGCTCGCATAGCTTC--CATGGT--------------ATCGTTTATGAGcattaacgatgtgctaattcccgttgccatgccagtcatgaggcgccatttttacctgctggttagatctacagacatggtaatttgcctgcacggacgactgtttacgatctagtgaagcaccgttcaagtgatggaatggcccgcgttgtccccagacatggctctagttaagcatgtctgggatgagctcgggcgacgagtctttgcacgtgtgactccgccaagaaacgttacaaagttactaccccatgcccttcttgatgccacacgctcgcatagcttccatggtatcgtttatgag
gi|10 : tacactcaaccgactacaaacgcaaagattgtatcagtgttaatacaactcaatcttttttaaatgtcatacacaacaataacaatattaaacgcataatctgtgcaaatttcattcatatatcgcaataaatgggcatataataaacgtcctgaataccatcggtgtttcgtgtcaaattcacaatactacgttattccccactcgcaatctttgcgtcataaacgacaatatgatggctatacgaccttgtacattaacgatgtgctaattcccgttgccatgccagtcatgaggcgccatttttacctgctggttagaT--------------GTTGTACATAAGG-----CATAGCTGTCAAG--------TG-----G-AGGA--T--TATAC-----AAGCGGTATTAATTTGCGAGTTTGACATGAAGAGCCAATG-----GTATTCAGGACATT-GTT--ATG-TGCCCA---TTTATGGCGATTTATCAATGAAATTTG-TACAGA--TTGT----GTG-TTT---ATATGGTTATTGTTG----TGTATAA-AATT----CTAA----------TTAATTCT--A-TT----TGTG-----TTAACA---CT-------GTT-AAAATCATCA---------TTGTACA-AC--C-TTTGCG--TTTCTTGATCCGTTTAGTG
gi|11 : gG-----CGTAGATGTTT-GCCGTGTATTGCGAGTG--GGAGAT--CATGC-----ACGTGGCATTAATTTGTGAATTTGATATGAAACACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCCTA---TTTAGTGCGATATATCAATAAAACTAG-CACAGG--TTAT----GTGTTTG---ATATTGTTATTGTTA----TGTATGG-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----TAAACA---CT-------GTT-AAAATTATCA---------TTGTACA-A-----TTTG-------TTAAATCGAT--AATGT
gi|12 : cATGAAACTTA-CACATA--TTAT----GTATTTT---ATATTATTATTGT-G----TGTA--A-AATT----AAAA----------CAAAAATG--A-AT----TGTA-----TTAACA---CT-------GTC-AAAATCATCA---------TTGTACA-AC--C-TGTGAA--TTTCTAAATTGGTTAAG
gi|13 : TTGTGATTTTGACATGAAG-ACCGGTG-----ATATTCAGGAGGAT-GTG--TTG-TGTCCA---TTTATTGCGATA---------AATTTG-CACGGA--TTAT----GCGTTTT---ATATTGTTATTGTTG----TGCATAA-AATT----TGAA----------TACATTTA--A-AT----GGTG-----TTAACA---CT-------GTT-GAAATCAACA---------TTGTACA-AC--C-TCTGCG--TTTCTAAATCGGTCGAGTGagcgcactgaggatgacttatatgttacttacatctcattatatgttaccaatatctcattatatgtta
gi|14 : GCAACGCTG-----ATATTCAGGAGGT--GTT--TTG-TGCCCA---TTTATTGCGGTATTTCAAAGACATTTG-CACAGA--TTATAATTGCGTTTC---ATATTGTTATTGTTG----TGTATGA-AATT----TAAA----------TAAATTTG--A-AT----CGTG-----TCAACA---CT-------GTT-AAAATTATCA---------TTGTACA-AC--CTTTTGTG--TTTCTTAACCAGTTTAGTGT
gi|15 : ATAATGCACCGATGGGATGGTATTCAGGACATT-GTT--ACG-CGCCCA---TTTATTGTGATATGTCAATGAAATTTT-GAAAAG--TTAT----ACGTTTT---ATATTGCAATTGTTA----TGTATGAGAATT----T-AA----------TAAATTTA--A-AC----TG-----------------T-------GTT-AAAATCATCA---------TTGTATA-AC--C-TTTACG--TTTCTAAATCGGTTGAGTGT
gi|16 : AGCACCAATG-----GTATTCAGGACATT-GTT--GTG-TGTCCT---TTTATTGTGATATATCAATGAAATATC-CACAGA--GTAT----------T---ATGTTGTTATTATTG----TGCATGA-ATAT----TGAA----------TAAATTTA--A-AT----TGTG-----TTAACA---CT-------GTT-AAAATCCTCA---------TTGTATA-AC--C-TATGCG--TTTCTAAGTCGGTTGAGTGT
gi|17 : TCCGCCAG----AACATGGAAAATGGCACCTCACGA-AT--GGT--ATGGCAAATGAAACTAACACAACGTTAATGC-ACAAGGTTGTATAGCTAC--CATAGT--------------ATCATTCATAAGC-----CATAAATGTa
gi|17 : ttcctcTCTACCA-ACATGATAA-----TACACCT-TCATATCGCACATGGAGGATGACTGCCTACC-T---atctaccaacatgataatacaccttcatatcgcacatggaggatgactgcctacct
gi|18 : ttcctcacatttatggcttatgaatgatactatggtagctatacaaccttgtgcattaacgttgtgttagtttcatttgccataccattcgtgaggtgccattttccatgttctggcggaaTCAAGACATT------ATG-TGCCCA---TTTATTGCGATATATCAAT-------------AA--TTGT----GCGTTTT------TTGTTATTGCGG----TGTA------------TGAA----------TATATTTC--C-AT----TGCG-----TGAACA---CT-------GTT-TAAATCATCA---------TTGTACA-AC--A-TTTGCGATTTTATAAAGCGGTTGAATGT
gi|19 : -AGACAAACAACGTTCAAGTGACGTATTGGTCAGTGTGATCCCCAGATATCACTCTTATGGAGCATGTCTTGGATGAGCTCGGCCCGCGGTTCCGTGCACACACG-TGCCTCCGCCAAG--AAACGTCAAATA-AAAACGCCATGTCCT--CGTTGATT---CGTGAAtaaatccacaaataaatacttctgcca
gi|2 : TCAGTGAAGAGAACTGACCTCTA----CTGTCTTTATAA-ACTTGATAA-----TGCCCTT-ACACATCGCACACGGCGGCCGACTGTTTATT-G---TC-ATACAAACAACGTTCAAGTGATGGATTGGCCAGCACTGTCCCAAGACACGACTCCTTTTGAACATGTCTGAGATGGATTCGAACGGCGGGTCCGTG--CACGCG-CGCATCCGCCAAA--ACATGTCAGAGA-GATACGCCACGTCAT--CGTCCATG---AGTGGGAC------AACATT----CTACAAAGTCGTATAGCTAT--CATAGT--------------GTCGTCTA-GAAG-----TGTATACCTCGAGTCA-GTATTGCGAATGTAGGGGCT--CATAC-----ACGCGGTAT---TTTGTGAATTTGACATTAAGCACCGATG-----GTATTCAGGACATT-GTT--ATG-TTCCCA---TTTATTGCGATAAGTCAATGAAATGTG-CACAGT--TTAT----TTCTTTTTTAAAATTTTTTTTG-TG----TGTACGA-AATT----TGAA----------TAAATTTG--A-AT----GGTT-----TTCACA---CT-------GCT-AAAATCATCA---------TTGTACA-AC--G-TTTGTG--TTTCTTAATCGGATGAGTGTtaaataaacaaa
gi|20 : cgCGGTG-----GTATTCAGGACGCT-CTT--ATG-TGCCTA---TTTATTGCGATAAAACAATGAAATTTA-CACATA--TTGT----GCATTTT---ATATTCTTATTATTG----CGTATGA-AATT----TAAA----------TGAA-TTG--A-AT----TGTG-----TT--------T-------AT-----ATCACCA---------TTGCACA-TC--C-TTTGTG--TATCTAAATCGGTTGAATG
gi|21 : AAGCACCGATG-----GTATTCAGAACTAT-GTG--TTG-TGCCCAT--TTTTTTGCGATATATCAATGGAATTTGTTACATA--TTAT----GCGATTT---GCATTGTTATCGTTG----TGTCTGA-AATA----TGTA----------T---------------------------------------------TT-AAAATCATCA---------TTGTACA-AC--A-TTTGCG--
gi|22 : tcaatgttcgaattatacttTTATCCCCAGTAATGGCTCCTTTGGAGCATGTTTGTGATGAGCTCGGACGGCGGGACCGTG--CACGCGATACA-CCGTAAAGAAAAACGTCAAATA-TTTAGGCCACACCCC--CGCTCATG---AGTGGAAC------AACATT----CAACAAAGTTGTATAGCTAC--CGTAGT--------------GT
gi|23 : TCAATAAAGCAAACTGACCCTGA----CTGTCTTTATCATAT-TGATAA-----TGGCA-T-GCACGTCGCACACGTCGGCCGACTTCTCGCAAT---TC--TACAAACACCGTTCAAGTGATAGATTGGCCTTCATTGTTCCTAGA
gi|24 : tct-GCACATCGCGCACGGCGGACAACGGCTGACA-T---TT-AGACAAGCAATATTTAAGTGATGGATTGGCTCGCGTTGTTCCCAGATATGGCTCCTATTGAGTATATACGGGACAAG
gi|25 : ataACGACTGCTTACC-TAAATC-AGACAAACATCGTTCAGGTGATGGATTGACCGGCGTTATCCCCAGTTATGA----TCTTGAACGT
gi|26 : ttacacataaccaagtcagaaacATT----TGAA----------TAAATTTG--A-AT----TGTG-----TTAACA---CTA------GTT---AATCATCC---------TTGTACA-AC--C-TTTGCG--TTTCTAAA--AGTTGAATGTtgttt
gi|27 : atAATGAAATTTG-TACATA--TCAT----GCGTTTT---ATATTGCATTTGTTG----TGTATAA-AATT----TA-------------AAATCT----------------------------------------------TCATTA---------TC---CA-AC--C-ATTACT--TTTCTAAATCGGTTGAacaattaaaaattattcaattt
gi|28 : TG----TGTATGA-AAAT----TGAA----------TGAACTTG--ATATGAAATGTG-----TTAACA---CT-------ATT-AAAATTATCA---------TTGTACA-ACATG-TTTGCG--TTTCTAAATCGGTTGAGT
gi|29 : aTCTGTTAAGAGAACTGACCTCCGTTGTCTGTCTTTATCA-ACTTGATAA-----TGCCTAT-ACACAACACGAACAGCAGACAACTGCTTA
gi|3 : aTACAAGGCTGTGTAGCTAC--CATAGT--------------ATTGTCTATGAGG-----TGTAGAAGTCTAGCCA-GTATTATGAGTG-GGGGA-T--CATGC-----AAACGGTATTAATTTGTGAATTTGGCATGAAGAACCGATG-----ATATCCAGAACAAT-G-T--ATGTTGCCCA---TTTATTGCGACATATCAATGGAATTTG-CACAGA--TTGT----GCATCTT---ATGTTGCTATTGTTA----TATATGA-AATT----TAAA----------TAAATTC-------------TG-----TTAACA---AT-------GTTAAAAATTGTTG---------TTGTACA-AC--C-TTTGCA--CTTCTAAATCGATCGAGTGTt
gi|3 : TCTACTA-ACATGATAACTTGATGCCCCT-GCACATTGCAATTGGAGGATGACTGCTTACC-T---TC-AAACAAACAACATT---------GATTGGCCTGTGTGATCCCCAGACATTGCTCCTATAGAGCATGTCTGAGA----------------GT--GTG--CCCGTT-TGCCTTTGCCAAG--AAATGTCAGAGA-ATTACACCATGCCAT--cattaaccatgtgttagttcctgttgccaatgccctgcatgaagtgccatttcccacatgctggtgaaatctactaacatgataacttgatgcccctgcacattgcaattggaggatgactgcttaccttcaaacaaacaacattgattggcctgtgtgatccccagacattgctcctatagagcatgtctgagagtgtgcccgtttgcctttgccaagaaatgtcagagaattacaccatgccat
gi|30 : acactcgatcgatttagaagtgcaaaggttgtacaacaacaatttttaacattgttaacagaatttatttaaatttcatatataacaatagcaacataagatgcacaatctgtgcaaattccattgatatgtcgcaataaatgggcaacatacattgttctggatatcatcggttcttcatgccaaattcacaaattaataccgtttgcatgatcccccactcataatactggctagacttctacacctcatagacaatactatggtagctacacagccttgtacattaaccatgtgttagttcctgttgccaatgccctgcatgaagtgccatttcccacatgctggtgaaaTT----TGAA----------TAAATTTG--A-AT----TGTT-----TTAACA---TT-------GTT-AAATTCAGCA---------CTGTGCA-GA--C-ATTGCA--TTTCTAAATCGCTTAAGTGT
gi|32 : tACAGA--GTGT----GCGTCT------GTTGTTGTGGTGG----TGTATGA-CATT----TGAA----------AGAAATTG--A-AT----TGTG-----TTA
gi|33 : GA-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----TTAACA---C---------TT-AAAATCACC
gi|34 : ttagaaacga-T---TT-AGGCAAACAACGTTCAAGTGACGTACTGGTCCGTGTGGTCCCCAGACA
gi|35 : AGA-----CGTAGGTTTTTAGCCT-GTATTGCGAGTG-AGGA--T--CATGC-----ACGTGGTA
gi|36 : -AAAATCCTCA---------TTGTACA-AC--C-ATAAAG--TTTCTCAATCGGTTGGGTG
gi|37 : tgAAATCGTCA---------TTGTACA-AC--A-TTTGCG--TTTC-AAACCGGTCAAGTGT
gi|38 : tTGTTCCCAGACATGCCTTCAATTGAGCATGTCTGGGATGAG
gi|4 : TACATGGTTGTATAGCCAC--CATAGT--------------GGTGTATATGAGG-----TGTAGATGTCAAGCCT-GTATTGCAAGTG-GGGGA-T--CATAT-----ATGAGATATTAATTTGTGAATTTGACACAAAACACCGATA-----GTATTCAGGACATT-GTTAAAAG-AAGCCA---TT--TTGTGA-ACAACAATGA
gi|4 : tacaaaacattccaTCTGCCA-AGGTGATAA-----TGCCCCTAGAATATCAAACATGGAGGACGACTGCTTACC-T---TT-AGACAAACAACGTTCAAGTGATGGATTGGCCTGTGTATTCTCCAGATACGGCTCCTTTTAAGCATGTCTGAGATGAGTTTGGTCAACAGGTCCATcattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaatctgccaaggtgataatgcccctagaatatcaaacatggaggacgactgcttacctttagacaaacaacgttcaagtgatggattggcctgtgtattctccagatacggctccttttaagcatgtctgagatgagtttggtcaacaggtccatcctttcttcataagtgcaacaacattccacaaggccatgtagctatcatagtgtgttccatgaggcatagatgtctagccagt
gi|4 : tacaaaacattccatcattgttgttcacaaaatggcttcttttaacaatgtcctgaatactatcggtgttttgtgtcaaattcacaaattaatatctcatatatgatcccccacttgcaatacaggcttgacatctacacctcatatacaccactatggtggctatacaaccatgtacattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaaGTCAA-CA-GGT---CCATCCTTT--C-TTCATA---AGTGCAAC------AACATT----CCACAAGGCCATGTAGCTAT--CATAGT--------------GTGTTCCATGAGG-----CATAGATGTCTAGCCA-GTcctttcttcataagtgcaacaacattccacaaggccatgtagctatcatagtgtgttccatgaggcatagatgtctagccagt
gi|5 : tacaaaacattccatcattgttgttcacaaaatggcttcttttaacaatgtcctgaatactatcggtgttttgtgtcaaattcacaaattaatatctcatatatgatcccccacttgcaatacaggcttgacatctacacctcatatacaccactatggtggctatacaaccatgtacattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaatctgccaaggtgataatgcccctagaatatcaaacatggaggacgactgcttacctttagacaaacaacgttcaagtgatggattggcctgtgtattctccagatacggctccttttaagcatgtctgagatgagtttgATTTATNNNNNNNNNNCGACACATCAATG-----ACATT--------T-GTT--GTA-TGCCTA---TTTATTGCGACACATCGATGACATTTA-CACAGC--TTAT----GCGTTTG---ATATTGTTATTGTTGTTATTTTGTGA-AGTTGACATGAAACGCTGATGGTAATCTTGTTC-AG----TGTGAAATTTTAATAAATCTTAATTGTGTT-AACACTATCAAAATCAATATTATACA-AT--C-TTTGCG--TTCCTAAATCGGTTGAAT
gi|5 : taaaagatagcatcccaatatgaacatctAGT--------------GTCATCTATGAGG-----CGTGGATGTCTATCTT-ATATTGCGAATG---GAG-TAGCATAC-----ACGCGGTATTAATTTGTGAATTTGGCATGAACCACCGATG-----GTATTCATGACGTT-ATT--GTA-TACCTA---TTTATTGCGACACATCAATGACATTTG-aggcatacaacaaatgtcattgatgtgtcgcaataaataggtatacaataacgtcatgaataccatcggtggttcatgccaaattcacaaattaataccgcgtgtatgctactccattcgcaatataagatagacatccacgcctcatagatgacact
gi|6 : taaaagatagcatcccaatatgaacatctattcaaccgatttaggaacgcaaagattgtataatattgattttgatagtgttaacacaattaagatttattaaaatttcacactgaacaagattaccatcagcgtttcatgtcaacttcacaaaataacaacaataacaatatcaaacgcataagctgtgtaaatgtcatcgatgtgtcgcaataaataggcatacaacaaatgtcattgatgtgtcgnnnnnnnnnnataaataggcatacaaTACATAGTCGTTTAGTTAC--TATAGTACCGTTTCTTTAGCGTCGTTTATGAAG-----CATAGATATCAAGTTT-GTAATGCAAG-------------A-AC-----ACGCGGTACTAATTTGTGAATTTGACATGGAGCACCAATG-----GTATTCAGGTCATT-GTA--ATA-TACCAAAGATTTAT---GGTGTATTTATGAAAATTG-CACTGA--TTAT----G-------------TGTTAATGTTG----TGTATGA-AATC----TGCA----------TAAATTTG--A-AC----TGAG-----TTAACA---CT-------GTT-AAAATTACCA---------TTGTGCA-AC--C-TTTGCG--TTT-TATATCGGTTCAGTGT
gi|6 : -ACATGATAA-----TGTCCTT-GCATATCGCGCACGGAAGACGACTGCTTACC-T---TC-AGACAAACAACATTTTAGTGATGGCTTGccttaaatatatactagttgccgtgccagtgtttacatgctgatggaatttattcacatgataatgtccttgcatatcgcgcacggaagacgactgcttaccttcagacaaacaacattttagtgatggcttgcg
gi|7 : acactgaaccgatataaaacgcaaaggttgcacaatggtaattttaacagtgttaactcagttcaaatttatgcagatttcatacacaacattaacacataatcagtgcaattttcataaatacaccataaatctttggtatattacaatgacctgaataccattggtgctccatgtcaaattcacaaattagtaccgcgtgttcttgcattacaaacttgatatctatgcttcataaacgacgctaaagaaacggtactatagtaactaaacgactatgtaccttaaatatatactagttgccgtgccagtgtttacatgctgatggaatttattcGTCTAGCTAGTACATAGT--------------GTCATCCATGAGG-----CATATATGTCTAGCCA-GTATTGCGAGCG-AGATA-T--CATACAATACACGCGGTATTAACATGTGAATGTGACATGAAGCACTGATG-----ATATTCATGACAAT-GAT--ATG-TGTCCC---TCTGTTGTGATGTATCAATGAAATTTG-CACAGG--TTAT----GGGTTTT---ATAATGTTATTGTTG----TGTATG-------------------------------G--A-AT----TGTG-----------------------G-T-AAAATCATCA---------TTGTACAGGA--C-TTTGCA--TTTCTAAATTGGTTAAGTcg
gi|7 : --CATAGT--------------GTCATCCATGAGG-----CATAGATGTCTAGCatctatgcctcatggatgacactatgtactggctagacatnnnnnnnnnncctcatggatgacactatgtactggctagacatctatgcctcatggaacacactatgatagctacatggccttgtggaatgttgttgcacttatga
gi|7 : acttaaccaatttagaaatgcaaagtcctgtacaatgatgattttaccacaattccatacacaacaataacattataaaacccataacctgtgcaaatttcattgatacatcacaacagagggacacatatcattgtcatgaatatcatcagtgcttcatgtcacattcacatgttaataccgcgtgtattgtatgatatctcgctcgcaatactggctagacatatatgcctcatggatgacactatgtacta--CATAGT--------------GTCATCCATGAGGNNNNNNNNNNATGTCTAGCCA-GTAtactggctagacatnnnnnnnnnncctcatggatgacactatgtactggctagacatctatgcctcatggaacacactatgatagctacatggccttgtggaatgttgttgcacttatga
gi|7 : acttaaccaatttagaaatgcaaagtcctgtacaatgatgattttaccacaattccatacacaacaataacattataaaacccataacctgtgcaaatttcattgatacatcacaacagagggacacatatcattgtcatgaatatcatcagtgcttcatgtcacattcacatgttaataccgcgtgtattgtatgatatctcgctcgcaatactggctagacatatatgcctcatggatgacactatgtactagctagacatctatgcctcatggatgacactatgTCATA---AGTGCAAC------AACATT----CCACAAGGCCATGTAGCTAT--CATAGT--------------GTGTTCCATGAGG-----CATAGATGTCTAGCCA-GTAtactggctagacatctatgcctcatggaacacactatgatagctacatggccttgtggaatgttgttgcacttatga
gi|8 : acttaaccaatttagaaatgcaaagtcctgtacaatgatgattttaccacaattccatacacaacaataacattataaaacccataacctgtgcaaatttcattgatacatcacaacagagggacacatatcattgtcatgaatatcatcagtgcttcatgtcacattcacatgttaataccgcgtgtattgtatgatatctcgctcgcaatactggctagacatatatgcctcatggatgacactatgtactagctagacatctatgcctcatggatgacactatgtactggctagacatnnnnnnnnnncctcatggatgacactatgTACAAGGTCGTATAGCTAC--CAACGT--------------GTCGATTATAAGT-----TTTAGATGACTAACCT-GTATTGTGAGTT-AGGA--T--TATAC-----ACACGGTACTAGTTTGTAAATTTGACATGAAGCACCGATT-----GTATTCGGGACGAC-GCC--ATG-TGCCCA---TTTATTGCGATATATCAATGAAATTTG-AAAAGATGTTAT------ATTTT---GTATCGTTTTTGATA----TGTAAGA-AACT----TGAA----------T---TTT------T----TTTA-----TTG-------T-------GTT-AACATCATCT---------TTGTACA-AC--A-TTTCCG--TTTCTAAACCGGTTATGTGT
gi|8 : tGTATCTATCA-ACATGATAA-----TGCACCT-GTACATCGCGTACGGCGAACGACTGCTTAAC-T---tattagcgatgtgctagtatccgatgccatccatgaagcgccattgatttacttaccggtagtatctatcaacatgataatgcacctgtacatcgcgtacggcgaacgactgcttaact
gi|9 : tacacataaccggtttagaaacggaaatgttgtacaaagatgatgttaacacaataaaaaaaattcaagtttcttacatatcaaaaacgatacaaaatataacatcttttcaaatttcattgatatatcgcaataaatgggcacatggcgtcgtcccgaatacaatcggtgcttcatgtcaaatttacaaactagtaccgtgtgtataatcctaactcacaatacaggttagtcatctaaaacttataatcgacacgttggtagctatacgaccttgtatattagcgatgtgctagtatccgatgccatccatgaagcgccattgatttacttaccggtaCGTATATTTAC--AAAAAT--------------TTCGTTTGTGA-------------TGTCTAGCCT-GTATTGCAAGTT-TTGGA-C--CATGT-----ACGTGGTAGTATTTTGTGAATTTGACATGAAGCCCCGATG-----ATATTCAGGACGTT-GAT--TTG-TGTTCA---TTTATTACGGTAAATCATTAAAA--------AGG--TTAT----GCGTTTT---TTTTTGTAATTGTTG----TGTAGGT-AATT----TAAA----------TAAATTTG--A----------G-----ATAATA---CT-------GCT-----TTATTG---------TTGTA-A-AC--
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|31 ): TTAGATGTACGGCACATGGTAATTTACATATTCGGACGACCGTTTCGCGACCGTAAAGCAC
Alignments
lowQualScore : 2222 11111 11 111 111 111111 1111 11111111111111 2222222222
lowQualScore : 1 1 8888 4 3 11111 1 4 0 2 3 666 4 3 1 3 1 11 8 000 1 5 1 77 1 77 2 0 000 6 999999 4444 1 33 33333333333333 55555 1 55 1111111111 88888 55555 0 2 22 2 555 0 2 22 4444 333 4444 1 3333 7777777777 333 1 3333 44444 333 7777777 1 666666666 1 22 1 22
lowQualScore : . . .... . . ..... . . . . . ... . . . . . .. . ... . . . .. . .. . . ... . ...... .... . .. .............. ..... . .. .......... ..... ..... . . .. . ... . . .. .... ... .... . .... .......... ... . .... ..... ... ....... . ......... . .. . ..
lowQualScore : 0 0 3333 4 9 11111 9 0 5 5 6 444 0 7 0 3 0 00 0 222 0 7 0 33 6 99 5 1 000 6 222222 2222 9 77 88888888888888 99999 1 55 8888888888 33333 66666 2 1 99 1 888 1 0 88 2222 555 0000 8 5555 3333333333 777 7 5555 22222 000 4444444 7 777777777 7 33 7 44
consensus : NNTCAGTNAAGAGAACTGACCTCNA----CTGTCTCTACCA-ACATGATAA-----TGCCCCT-GCACATCGCGCACGGCGGACGACTGCTTACC-T---TC-AGACAAACAACGTTCAAGTGATGGATTGGCCCGCGTTGTCCCCAGACATGGCTCCTNTTGAGCATGTCTGGGATGAGCTCGGNCGGCGGGTCCGTG--CACGCG-TGCCTCCGCCAAG--AAACGTCAAANA-GNTACGCCACGCCAT--CGTTCATG---AGTGNAAC------AACATT----CTACAAGGTCGTATAGCTAC--CATAGT--------------GTCGTCCATGAGG-----CGTAGATGTCTAGCCN-GTATTGCGAGTG-AGGAG-T--CATAC-----ACGCGGTATTAATTTGTGAATTTGACATGAAGCACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCCCA---TTTATTGCGATATATCAATGAAATTTG-CACAGA--TTAT----GCGTTTT---ATATTGTTATTGTTG----TGTATGA-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----TTAACA---CT-------GTT-AAAATCATCA---------TTGTACA-AC--C-TTTGCG--TTTCTAAATCGGTTGAGTGT
Reference ( family-88 ) : NNTCAGTNAAGAGAACTGACCTCNA----CTGTCTCTACCA-ACATGATAA-----TGCCCCT-GCACATCGCGCACGGCGGACGACTGCTTACC-T---TC-AGACAAACAACGTTCAAGTGATGGATTGGCCCGCGTTGTCCCCAGACATGGCTCCTNTTGAGCATGTCTGGGATGAGCTCGGNCGGCGGGTCCGTG--CACGCG-TGCCTCCGCCAAG--AAACGTCAAANA-GNTACGCCACGCCAT--CGTTCATG---AGTGNAAC------AACATT----CTACAAGGTCGTATAGCTAC--CATAGT--------------GTCGTCCATGAGG-----CGTAGATGTCTAGCCN-GTATTGCGAGTG-AGGAG-T--CATAC-----ACGCGGTATTAATTTGTGAATTTGACATGAAGCACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCCCA---TTTATTGCGATATATCAATGAAATTTG-CACAGA--TTAT----GCGTTTT---ATATTGTTATTGTTG----TGTATGA-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----TTAACA---CT-------GTT-AAAATCATCA---------TTGTACA-AC--C-TTTGCG--TTTCTAAATCGGTTGAGTGT
gi|1 : TACAAGGTCGTATAGCCAT--CATATT--------------GTCGTTTATGACG-----CAAAGAT--------------TGCGAGTG-GGGA------ATA------ACGTAGTATT-----GTGAATTTGACACGAAACACCGATG-----GTATTCAGGACGTTTATT--ATA-TGCCCA---TTTATTGCGATATATGAATGAAATTTG-CACAGA--TTAT----GCGTTTA---ATATTGTTATTGTTG----TGTATGA-CATT----TAAA----------AAAGATTG--A-GT----TGTA-----TTAACA---CT-------G------------------------ATACA-AT--C-TTTGCG--TTTGT-AGTCGGTTGAGTGT
gi|1 : tTCTACAG-ACATGGTAA-----TTTGCCT-GCAC------------GGACGACTGTTTACG-A---TCTAGTGAAGCACCGTTCAAGTGATGGAATGGCCCGCGTTGTCCCCAGACATGGCTCTAGTTAAGCATGTCTGGGATGAGCTCGGGCGACGAGTCTTTG--CACGTG-TGACTCCGCCAAG--AAACGTTACAAA-GTTA--CTACCCCATGCCCTTCTTG---A-TG--------------------CCACACGCTCGCATAGCTTC--CATGGT--------------ATCGTTTATGAGcattaacgatgtgctaattcccgttgccatgccagtcatgaggcgccatttttacctgctggttagatctacagacatggtaatttgcctgcacggacgactgtttacgatctagtgaagcaccgttcaagtgatggaatggcccgcgttgtccccagacatggctctagttaagcatgtctgggatgagctcgggcgacgagtctttgcacgtgtgactccgccaagaaacgttacaaagttactaccccatgcccttcttgatgccacacgctcgcatagcttccatggtatcgtttatgag
gi|10 : tacactcaaccgactacaaacgcaaagattgtatcagtgttaatacaactcaatcttttttaaatgtcatacacaacaataacaatattaaacgcataatctgtgcaaatttcattcatatatcgcaataaatgggcatataataaacgtcctgaataccatcggtgtttcgtgtcaaattcacaatactacgttattccccactcgcaatctttgcgtcataaacgacaatatgatggctatacgaccttgtacattaacgatgtgctaattcccgttgccatgccagtcatgaggcgccatttttacctgctggttagaT--------------GTTGTACATAAGG-----CATAGCTGTCAAG--------TG-----G-AGGA--T--TATAC-----AAGCGGTATTAATTTGCGAGTTTGACATGAAGAGCCAATG-----GTATTCAGGACATT-GTT--ATG-TGCCCA---TTTATGGCGATTTATCAATGAAATTTG-TACAGA--TTGT----GTG-TTT---ATATGGTTATTGTTG----TGTATAA-AATT----CTAA----------TTAATTCT--A-TT----TGTG-----TTAACA---CT-------GTT-AAAATCATCA---------TTGTACA-AC--C-TTTGCG--TTTCTTGATCCGTTTAGTG
gi|11 : gG-----CGTAGATGTTT-GCCGTGTATTGCGAGTG--GGAGAT--CATGC-----ACGTGGCATTAATTTGTGAATTTGATATGAAACACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCCTA---TTTAGTGCGATATATCAATAAAACTAG-CACAGG--TTAT----GTGTTTG---ATATTGTTATTGTTA----TGTATGG-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----TAAACA---CT-------GTT-AAAATTATCA---------TTGTACA-A-----TTTG-------TTAAATCGAT--AATGT
gi|12 : cATGAAACTTA-CACATA--TTAT----GTATTTT---ATATTATTATTGT-G----TGTA--A-AATT----AAAA----------CAAAAATG--A-AT----TGTA-----TTAACA---CT-------GTC-AAAATCATCA---------TTGTACA-AC--C-TGTGAA--TTTCTAAATTGGTTAAG
gi|13 : TTGTGATTTTGACATGAAG-ACCGGTG-----ATATTCAGGAGGAT-GTG--TTG-TGTCCA---TTTATTGCGATA---------AATTTG-CACGGA--TTAT----GCGTTTT---ATATTGTTATTGTTG----TGCATAA-AATT----TGAA----------TACATTTA--A-AT----GGTG-----TTAACA---CT-------GTT-GAAATCAACA---------TTGTACA-AC--C-TCTGCG--TTTCTAAATCGGTCGAGTGagcgcactgaggatgacttatatgttacttacatctcattatatgttaccaatatctcattatatgtta
gi|14 : GCAACGCTG-----ATATTCAGGAGGT--GTT--TTG-TGCCCA---TTTATTGCGGTATTTCAAAGACATTTG-CACAGA--TTATAATTGCGTTTC---ATATTGTTATTGTTG----TGTATGA-AATT----TAAA----------TAAATTTG--A-AT----CGTG-----TCAACA---CT-------GTT-AAAATTATCA---------TTGTACA-AC--CTTTTGTG--TTTCTTAACCAGTTTAGTGT
gi|15 : ATAATGCACCGATGGGATGGTATTCAGGACATT-GTT--ACG-CGCCCA---TTTATTGTGATATGTCAATGAAATTTT-GAAAAG--TTAT----ACGTTTT---ATATTGCAATTGTTA----TGTATGAGAATT----T-AA----------TAAATTTA--A-AC----TG-----------------T-------GTT-AAAATCATCA---------TTGTATA-AC--C-TTTACG--TTTCTAAATCGGTTGAGTGT
gi|16 : AGCACCAATG-----GTATTCAGGACATT-GTT--GTG-TGTCCT---TTTATTGTGATATATCAATGAAATATC-CACAGA--GTAT----------T---ATGTTGTTATTATTG----TGCATGA-ATAT----TGAA----------TAAATTTA--A-AT----TGTG-----TTAACA---CT-------GTT-AAAATCCTCA---------TTGTATA-AC--C-TATGCG--TTTCTAAGTCGGTTGAGTGT
gi|17 : TCCGCCAG----AACATGGAAAATGGCACCTCACGA-AT--GGT--ATGGCAAATGAAACTAACACAACGTTAATGC-ACAAGGTTGTATAGCTAC--CATAGT--------------ATCATTCATAAGC-----CATAAATGTa
gi|17 : ttcctcTCTACCA-ACATGATAA-----TACACCT-TCATATCGCACATGGAGGATGACTGCCTACC-T---atctaccaacatgataatacaccttcatatcgcacatggaggatgactgcctacct
gi|18 : ttcctcacatttatggcttatgaatgatactatggtagctatacaaccttgtgcattaacgttgtgttagtttcatttgccataccattcgtgaggtgccattttccatgttctggcggaaTCAAGACATT------ATG-TGCCCA---TTTATTGCGATATATCAAT-------------AA--TTGT----GCGTTTT------TTGTTATTGCGG----TGTA------------TGAA----------TATATTTC--C-AT----TGCG-----TGAACA---CT-------GTT-TAAATCATCA---------TTGTACA-AC--A-TTTGCGATTTTATAAAGCGGTTGAATGT
gi|19 : -AGACAAACAACGTTCAAGTGACGTATTGGTCAGTGTGATCCCCAGATATCACTCTTATGGAGCATGTCTTGGATGAGCTCGGCCCGCGGTTCCGTGCACACACG-TGCCTCCGCCAAG--AAACGTCAAATA-AAAACGCCATGTCCT--CGTTGATT---CGTGAAtaaatccacaaataaatacttctgcca
gi|2 : TCAGTGAAGAGAACTGACCTCTA----CTGTCTTTATAA-ACTTGATAA-----TGCCCTT-ACACATCGCACACGGCGGCCGACTGTTTATT-G---TC-ATACAAACAACGTTCAAGTGATGGATTGGCCAGCACTGTCCCAAGACACGACTCCTTTTGAACATGTCTGAGATGGATTCGAACGGCGGGTCCGTG--CACGCG-CGCATCCGCCAAA--ACATGTCAGAGA-GATACGCCACGTCAT--CGTCCATG---AGTGGGAC------AACATT----CTACAAAGTCGTATAGCTAT--CATAGT--------------GTCGTCTA-GAAG-----TGTATACCTCGAGTCA-GTATTGCGAATGTAGGGGCT--CATAC-----ACGCGGTAT---TTTGTGAATTTGACATTAAGCACCGATG-----GTATTCAGGACATT-GTT--ATG-TTCCCA---TTTATTGCGATAAGTCAATGAAATGTG-CACAGT--TTAT----TTCTTTTTTAAAATTTTTTTTG-TG----TGTACGA-AATT----TGAA----------TAAATTTG--A-AT----GGTT-----TTCACA---CT-------GCT-AAAATCATCA---------TTGTACA-AC--G-TTTGTG--TTTCTTAATCGGATGAGTGTtaaataaacaaa
gi|20 : cgCGGTG-----GTATTCAGGACGCT-CTT--ATG-TGCCTA---TTTATTGCGATAAAACAATGAAATTTA-CACATA--TTGT----GCATTTT---ATATTCTTATTATTG----CGTATGA-AATT----TAAA----------TGAA-TTG--A-AT----TGTG-----TT--------T-------AT-----ATCACCA---------TTGCACA-TC--C-TTTGTG--TATCTAAATCGGTTGAATG
gi|21 : AAGCACCGATG-----GTATTCAGAACTAT-GTG--TTG-TGCCCAT--TTTTTTGCGATATATCAATGGAATTTGTTACATA--TTAT----GCGATTT---GCATTGTTATCGTTG----TGTCTGA-AATA----TGTA----------T---------------------------------------------TT-AAAATCATCA---------TTGTACA-AC--A-TTTGCG--
gi|22 : tcaatgttcgaattatacttTTATCCCCAGTAATGGCTCCTTTGGAGCATGTTTGTGATGAGCTCGGACGGCGGGACCGTG--CACGCGATACA-CCGTAAAGAAAAACGTCAAATA-TTTAGGCCACACCCC--CGCTCATG---AGTGGAAC------AACATT----CAACAAAGTTGTATAGCTAC--CGTAGT--------------GT
gi|23 : TCAATAAAGCAAACTGACCCTGA----CTGTCTTTATCATAT-TGATAA-----TGGCA-T-GCACGTCGCACACGTCGGCCGACTTCTCGCAAT---TC--TACAAACACCGTTCAAGTGATAGATTGGCCTTCATTGTTCCTAGA
gi|24 : tct-GCACATCGCGCACGGCGGACAACGGCTGACA-T---TT-AGACAAGCAATATTTAAGTGATGGATTGGCTCGCGTTGTTCCCAGATATGGCTCCTATTGAGTATATACGGGACAAG
gi|25 : ataACGACTGCTTACC-TAAATC-AGACAAACATCGTTCAGGTGATGGATTGACCGGCGTTATCCCCAGTTATGA----TCTTGAACGT
gi|26 : ttacacataaccaagtcagaaacATT----TGAA----------TAAATTTG--A-AT----TGTG-----TTAACA---CTA------GTT---AATCATCC---------TTGTACA-AC--C-TTTGCG--TTTCTAAA--AGTTGAATGTtgttt
gi|27 : atAATGAAATTTG-TACATA--TCAT----GCGTTTT---ATATTGCATTTGTTG----TGTATAA-AATT----TA-------------AAATCT----------------------------------------------TCATTA---------TC---CA-AC--C-ATTACT--TTTCTAAATCGGTTGAacaattaaaaattattcaattt
gi|28 : TG----TGTATGA-AAAT----TGAA----------TGAACTTG--ATATGAAATGTG-----TTAACA---CT-------ATT-AAAATTATCA---------TTGTACA-ACATG-TTTGCG--TTTCTAAATCGGTTGAGT
gi|29 : aTCTGTTAAGAGAACTGACCTCCGTTGTCTGTCTTTATCA-ACTTGATAA-----TGCCTAT-ACACAACACGAACAGCAGACAACTGCTTA
gi|3 : aTACAAGGCTGTGTAGCTAC--CATAGT--------------ATTGTCTATGAGG-----TGTAGAAGTCTAGCCA-GTATTATGAGTG-GGGGA-T--CATGC-----AAACGGTATTAATTTGTGAATTTGGCATGAAGAACCGATG-----ATATCCAGAACAAT-G-T--ATGTTGCCCA---TTTATTGCGACATATCAATGGAATTTG-CACAGA--TTGT----GCATCTT---ATGTTGCTATTGTTA----TATATGA-AATT----TAAA----------TAAATTC-------------TG-----TTAACA---AT-------GTTAAAAATTGTTG---------TTGTACA-AC--C-TTTGCA--CTTCTAAATCGATCGAGTGTt
gi|3 : TCTACTA-ACATGATAACTTGATGCCCCT-GCACATTGCAATTGGAGGATGACTGCTTACC-T---TC-AAACAAACAACATT---------GATTGGCCTGTGTGATCCCCAGACATTGCTCCTATAGAGCATGTCTGAGA----------------GT--GTG--CCCGTT-TGCCTTTGCCAAG--AAATGTCAGAGA-ATTACACCATGCCAT--cattaaccatgtgttagttcctgttgccaatgccctgcatgaagtgccatttcccacatgctggtgaaatctactaacatgataacttgatgcccctgcacattgcaattggaggatgactgcttaccttcaaacaaacaacattgattggcctgtgtgatccccagacattgctcctatagagcatgtctgagagtgtgcccgtttgcctttgccaagaaatgtcagagaattacaccatgccat
gi|30 : acactcgatcgatttagaagtgcaaaggttgtacaacaacaatttttaacattgttaacagaatttatttaaatttcatatataacaatagcaacataagatgcacaatctgtgcaaattccattgatatgtcgcaataaatgggcaacatacattgttctggatatcatcggttcttcatgccaaattcacaaattaataccgtttgcatgatcccccactcataatactggctagacttctacacctcatagacaatactatggtagctacacagccttgtacattaaccatgtgttagttcctgttgccaatgccctgcatgaagtgccatttcccacatgctggtgaaaTT----TGAA----------TAAATTTG--A-AT----TGTT-----TTAACA---TT-------GTT-AAATTCAGCA---------CTGTGCA-GA--C-ATTGCA--TTTCTAAATCGCTTAAGTGT
gi|32 : tACAGA--GTGT----GCGTCT------GTTGTTGTGGTGG----TGTATGA-CATT----TGAA----------AGAAATTG--A-AT----TGTG-----TTA
gi|33 : GA-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----TTAACA---C---------TT-AAAATCACC
gi|34 : ttagaaacga-T---TT-AGGCAAACAACGTTCAAGTGACGTACTGGTCCGTGTGGTCCCCAGACA
gi|35 : AGA-----CGTAGGTTTTTAGCCT-GTATTGCGAGTG-AGGA--T--CATGC-----ACGTGGTA
gi|36 : -AAAATCCTCA---------TTGTACA-AC--C-ATAAAG--TTTCTCAATCGGTTGGGTG
gi|37 : tgAAATCGTCA---------TTGTACA-AC--A-TTTGCG--TTTC-AAACCGGTCAAGTGT
gi|38 : tTGTTCCCAGACATGCCTTCAATTGAGCATGTCTGGGATGAG
gi|4 : TACATGGTTGTATAGCCAC--CATAGT--------------GGTGTATATGAGG-----TGTAGATGTCAAGCCT-GTATTGCAAGTG-GGGGA-T--CATAT-----ATGAGATATTAATTTGTGAATTTGACACAAAACACCGATA-----GTATTCAGGACATT-GTTAAAAG-AAGCCA---TT--TTGTGA-ACAACAATGA
gi|4 : tacaaaacattccaTCTGCCA-AGGTGATAA-----TGCCCCTAGAATATCAAACATGGAGGACGACTGCTTACC-T---TT-AGACAAACAACGTTCAAGTGATGGATTGGCCTGTGTATTCTCCAGATACGGCTCCTTTTAAGCATGTCTGAGATGAGTTTGGTCAACAGGTCCATcattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaatctgccaaggtgataatgcccctagaatatcaaacatggaggacgactgcttacctttagacaaacaacgttcaagtgatggattggcctgtgtattctccagatacggctccttttaagcatgtctgagatgagtttggtcaacaggtccatcctttcttcataagtgcaacaacattccacaaggccatgtagctatcatagtgtgttccatgaggcatagatgtctagccagt
gi|4 : tacaaaacattccatcattgttgttcacaaaatggcttcttttaacaatgtcctgaatactatcggtgttttgtgtcaaattcacaaattaatatctcatatatgatcccccacttgcaatacaggcttgacatctacacctcatatacaccactatggtggctatacaaccatgtacattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaaGTCAA-CA-GGT---CCATCCTTT--C-TTCATA---AGTGCAAC------AACATT----CCACAAGGCCATGTAGCTAT--CATAGT--------------GTGTTCCATGAGG-----CATAGATGTCTAGCCA-GTcctttcttcataagtgcaacaacattccacaaggccatgtagctatcatagtgtgttccatgaggcatagatgtctagccagt
gi|5 : tacaaaacattccatcattgttgttcacaaaatggcttcttttaacaatgtcctgaatactatcggtgttttgtgtcaaattcacaaattaatatctcatatatgatcccccacttgcaatacaggcttgacatctacacctcatatacaccactatggtggctatacaaccatgtacattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaatctgccaaggtgataatgcccctagaatatcaaacatggaggacgactgcttacctttagacaaacaacgttcaagtgatggattggcctgtgtattctccagatacggctccttttaagcatgtctgagatgagtttgATTTATNNNNNNNNNNCGACACATCAATG-----ACATT--------T-GTT--GTA-TGCCTA---TTTATTGCGACACATCGATGACATTTA-CACAGC--TTAT----GCGTTTG---ATATTGTTATTGTTGTTATTTTGTGA-AGTTGACATGAAACGCTGATGGTAATCTTGTTC-AG----TGTGAAATTTTAATAAATCTTAATTGTGTT-AACACTATCAAAATCAATATTATACA-AT--C-TTTGCG--TTCCTAAATCGGTTGAAT
gi|5 : taaaagatagcatcccaatatgaacatctAGT--------------GTCATCTATGAGG-----CGTGGATGTCTATCTT-ATATTGCGAATG---GAG-TAGCATAC-----ACGCGGTATTAATTTGTGAATTTGGCATGAACCACCGATG-----GTATTCATGACGTT-ATT--GTA-TACCTA---TTTATTGCGACACATCAATGACATTTG-aggcatacaacaaatgtcattgatgtgtcgcaataaataggtatacaataacgtcatgaataccatcggtggttcatgccaaattcacaaattaataccgcgtgtatgctactccattcgcaatataagatagacatccacgcctcatagatgacact
gi|6 : taaaagatagcatcccaatatgaacatctattcaaccgatttaggaacgcaaagattgtataatattgattttgatagtgttaacacaattaagatttattaaaatttcacactgaacaagattaccatcagcgtttcatgtcaacttcacaaaataacaacaataacaatatcaaacgcataagctgtgtaaatgtcatcgatgtgtcgcaataaataggcatacaacaaatgtcattgatgtgtcgnnnnnnnnnnataaataggcatacaaTACATAGTCGTTTAGTTAC--TATAGTACCGTTTCTTTAGCGTCGTTTATGAAG-----CATAGATATCAAGTTT-GTAATGCAAG-------------A-AC-----ACGCGGTACTAATTTGTGAATTTGACATGGAGCACCAATG-----GTATTCAGGTCATT-GTA--ATA-TACCAAAGATTTAT---GGTGTATTTATGAAAATTG-CACTGA--TTAT----G-------------TGTTAATGTTG----TGTATGA-AATC----TGCA----------TAAATTTG--A-AC----TGAG-----TTAACA---CT-------GTT-AAAATTACCA---------TTGTGCA-AC--C-TTTGCG--TTT-TATATCGGTTCAGTGT
gi|6 : -ACATGATAA-----TGTCCTT-GCATATCGCGCACGGAAGACGACTGCTTACC-T---TC-AGACAAACAACATTTTAGTGATGGCTTGccttaaatatatactagttgccgtgccagtgtttacatgctgatggaatttattcacatgataatgtccttgcatatcgcgcacggaagacgactgcttaccttcagacaaacaacattttagtgatggcttgcg
gi|7 : acactgaaccgatataaaacgcaaaggttgcacaatggtaattttaacagtgttaactcagttcaaatttatgcagatttcatacacaacattaacacataatcagtgcaattttcataaatacaccataaatctttggtatattacaatgacctgaataccattggtgctccatgtcaaattcacaaattagtaccgcgtgttcttgcattacaaacttgatatctatgcttcataaacgacgctaaagaaacggtactatagtaactaaacgactatgtaccttaaatatatactagttgccgtgccagtgtttacatgctgatggaatttattcGTCTAGCTAGTACATAGT--------------GTCATCCATGAGG-----CATATATGTCTAGCCA-GTATTGCGAGCG-AGATA-T--CATACAATACACGCGGTATTAACATGTGAATGTGACATGAAGCACTGATG-----ATATTCATGACAAT-GAT--ATG-TGTCCC---TCTGTTGTGATGTATCAATGAAATTTG-CACAGG--TTAT----GGGTTTT---ATAATGTTATTGTTG----TGTATG-------------------------------G--A-AT----TGTG-----------------------G-T-AAAATCATCA---------TTGTACAGGA--C-TTTGCA--TTTCTAAATTGGTTAAGTcg
gi|7 : --CATAGT--------------GTCATCCATGAGG-----CATAGATGTCTAGCatctatgcctcatggatgacactatgtactggctagacatnnnnnnnnnncctcatggatgacactatgtactggctagacatctatgcctcatggaacacactatgatagctacatggccttgtggaatgttgttgcacttatga
gi|7 : acttaaccaatttagaaatgcaaagtcctgtacaatgatgattttaccacaattccatacacaacaataacattataaaacccataacctgtgcaaatttcattgatacatcacaacagagggacacatatcattgtcatgaatatcatcagtgcttcatgtcacattcacatgttaataccgcgtgtattgtatgatatctcgctcgcaatactggctagacatatatgcctcatggatgacactatgtacta--CATAGT--------------GTCATCCATGAGGNNNNNNNNNNATGTCTAGCCA-GTAtactggctagacatnnnnnnnnnncctcatggatgacactatgtactggctagacatctatgcctcatggaacacactatgatagctacatggccttgtggaatgttgttgcacttatga
gi|7 : acttaaccaatttagaaatgcaaagtcctgtacaatgatgattttaccacaattccatacacaacaataacattataaaacccataacctgtgcaaatttcattgatacatcacaacagagggacacatatcattgtcatgaatatcatcagtgcttcatgtcacattcacatgttaataccgcgtgtattgtatgatatctcgctcgcaatactggctagacatatatgcctcatggatgacactatgtactagctagacatctatgcctcatggatgacactatgTCATA---AGTGCAAC------AACATT----CCACAAGGCCATGTAGCTAT--CATAGT--------------GTGTTCCATGAGG-----CATAGATGTCTAGCCA-GTAtactggctagacatctatgcctcatggaacacactatgatagctacatggccttgtggaatgttgttgcacttatga
gi|8 : acttaaccaatttagaaatgcaaagtcctgtacaatgatgattttaccacaattccatacacaacaataacattataaaacccataacctgtgcaaatttcattgatacatcacaacagagggacacatatcattgtcatgaatatcatcagtgcttcatgtcacattcacatgttaataccgcgtgtattgtatgatatctcgctcgcaatactggctagacatatatgcctcatggatgacactatgtactagctagacatctatgcctcatggatgacactatgtactggctagacatnnnnnnnnnncctcatggatgacactatgTACAAGGTCGTATAGCTAC--CAACGT--------------GTCGATTATAAGT-----TTTAGATGACTAACCT-GTATTGTGAGTT-AGGA--T--TATAC-----ACACGGTACTAGTTTGTAAATTTGACATGAAGCACCGATT-----GTATTCGGGACGAC-GCC--ATG-TGCCCA---TTTATTGCGATATATCAATGAAATTTG-AAAAGATGTTAT------ATTTT---GTATCGTTTTTGATA----TGTAAGA-AACT----TGAA----------T---TTT------T----TTTA-----TTG-------T-------GTT-AACATCATCT---------TTGTACA-AC--A-TTTCCG--TTTCTAAACCGGTTATGTGT
gi|8 : tGTATCTATCA-ACATGATAA-----TGCACCT-GTACATCGCGTACGGCGAACGACTGCTTAAC-T---tattagcgatgtgctagtatccgatgccatccatgaagcgccattgatttacttaccggtagtatctatcaacatgataatgcacctgtacatcgcgtacggcgaacgactgcttaact
gi|9 : tacacataaccggtttagaaacggaaatgttgtacaaagatgatgttaacacaataaaaaaaattcaagtttcttacatatcaaaaacgatacaaaatataacatcttttcaaatttcattgatatatcgcaataaatgggcacatggcgtcgtcccgaatacaatcggtgcttcatgtcaaatttacaaactagtaccgtgtgtataatcctaactcacaatacaggttagtcatctaaaacttataatcgacacgttggtagctatacgaccttgtatattagcgatgtgctagtatccgatgccatccatgaagcgccattgatttacttaccggtaCGTATATTTAC--AAAAAT--------------TTCGTTTGTGA-------------TGTCTAGCCT-GTATTGCAAGTT-TTGGA-C--CATGT-----ACGTGGTAGTATTTTGTGAATTTGACATGAAGCCCCGATG-----ATATTCAGGACGTT-GAT--TTG-TGTTCA---TTTATTACGGTAAATCATTAAAA--------AGG--TTAT----GCGTTTT---TTTTTGTAATTGTTG----TGTAGGT-AATT----TAAA----------TAAATTTG--A----------G-----ATAATA---CT-------GCT-----TTATTG---------TTGTA-A-AC--
blockSeqs : A G TTGT T A CTTGA C A A A AAA . A A C C CA A GAA A T G CC A . G GCA A TAACAC AATG C TA ACCGTTTCTTTAGC NNNNN A GT TAGGGGCT AATAC GGATG . AA T AGA T TG AATT TTA TTAT G GACA ACGCTGATGG GTT T GAAA AAATT AAT TAATTGT A AAATCAATA G AT T AT
blockSeqs : T C . . T . T . C . . . A T A G . . G T . A CG C . G . A . . T . . . G A GGAGAT . . . . . T . . . . . . . . T . . . . A . . . . . .
blockSeqs : . T . A . C . . . T T A G . . A G . A CG A . G . G . . A . . . A A GGGGAT . . . . . . . . . . . . . . G . . . . . . . . . . .
blockSeqs : . A . C . C . . . C A T A . . G T . T GG C . G . G . . T . . . G T GGGGAT . . . . . . . . . . . . . . G . . . . . . . . . . .
blockSeqs : . G . C . C . . . G C . . . G . T CA A . . . C . . T . . . G T GAGTAG . . . . . . . . . . . . . . A . . . . . . . . . . .
blockSeqs : . A . T . A . . . T A C . G . T . . C C . . . G A AGATAT . . . . . . . . . . . . . . G . . . . . . . . . . .
blockSeqs : . A . C . A . . . C A T . . . G T TTGGAC . . . . . . . . . . . . . . A . . . . . . . . . . .
blockSeqs : . . . . . A . . . T T C . . . A T AGGAT . . . . . . . . . . . . . . A . . . . . . . . . . .
blockSeqs : . C . . . T . . . G A AGGAT . . . . . . . . . . . . . . C . . . . . . . . . . .
blockSeqs : . . . . . . A A AGGAT . . . . . . . . . . . . . . G . . . . . . . . . . .
blockSeqs : . . . A A . . . . . . . . . . . . . . . G . . . . . . . . . . .
blockSeqs : . . . A T . . . . . . . . . . . . . G . . . . . . . . . . .
blockSeqs : . . . N T . . . . . . . . . . . . . G . . . . . . . . . . .
blockSeqs : . . . A . . . . . . . . . . . . . . G . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . G . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . G . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . G . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . G . . . . . . . . . . .
blockSeqs : . . . . . . . . G . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons : CG ** N* GGGGAT****
originalCons : NNTCAGTNAAGAGAACTGACCTCNA----CTGTCTCTACCA-ACATGATAA-----TGCCCCT-GCACATCGCGCACGGCGGACGACTGCTTACC-T---TC-AGACAAACAACGTTCAAGTGATGGATTGGCCCGCGTTGTCCCCAGACATGGCTCCTNTTGAGCATGTCTGGGATGAGCTCGGNCGGCGGGTCCGTG--CACGCG-TGCCTCCGCCAAG--AAACGTCAAANA-GNTACGCCACGCCAT--CGTTCATG---AGTGNAAC------AACATT----CTACAAGGTCGTATAGCTAC--CATAGT--------------GTCGTCCATGAGG-----CGTAGATGTCTAGCCN-GTATTGCGAGTG-AGGAG-T--CATAC-----ACGCGGTATTAATTTGTGAATTTGACATGAAGCACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCCCA---TTTATTGCGATATATCAATGAAATTTG-CACAGA--TTAT----GCGTTTT---ATATTGTTATTGTTG----TGTATGA-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----TTAACA---CT-------GTT-AAAATCATCA---------TTGTACA-AC--C-TTTGCG--TTTCTAAATCGGTTGAGTGT
finalCons : NNTCAGTNAAGAGAACTGACCTCNA----CTGTCTCTACCA-ACATGATAA-----TGCCCCT-GCACATCGCGCACGGCGGACGACTGCTTACC-T---TC-AGACAAACAACGTTCAAGTGATGGATTGGCCCGCGTTGTCCCCAGACATGGCTCCTNTTGAGCATGTCTGGGATGAGCTCGGNCGGCGGGTCCGTG--CACGCG-TGCCTCCGCCAAG--AAACGTCAAANA-GNTACGCCACGCCAT--CGTTCATG---AGTGNAAC------AACATT----CTACAAGGTCGTATAGCTAC--CATAGT--------------GTCGTCCATGAGG-----CGTAGATGTCTAGCCN-GTATTGCGAGTGGGGGAT----CATAC-----ACGCGGTATTAATTTGTGAATTTGACATGAAGCACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCCCA---TTTATTGCGATATATCAATGAAATTTG-CACAGA--TTAT----GCGTTTT---ATATTGTTATTGTTG----TGTATGA-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----TTAACA---CT-------GTT-AAAATCATCA---------TTGTACA-AC--C-TTTGCG--TTTCTAAATCGGTTGAGTGT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|31 ): TTAGATGTACGGCACATGGTAATTTACATATTCGGACGACCGTTTCGCGACCGTAAAGCAC
Alignments
lowQualScore : 2222 11111 11 111 111 111111 1111 11111111111111
lowQualScore : 1 1 8888 4 3 11111 1 4 0 2 3 666 4 3 1 3 1 11 8 000 1 5 1 77 1 77 2 0 000 6 999999 4444 1 33 33333333333333 55555 1 0 55 44 1 1 88888 55555 0 2 22 2 555 0 2 22 4444 333 4444 1 3333 7777777777 333 1 3333 44444 333 7777777 1 666666666 1 22 1 22
lowQualScore : . . .... . . ..... . . . . . ... . . . . . .. . ... . . . .. . .. . . ... . ...... .... . .. .............. ..... . . .. .. . . ..... ..... . . .. . ... . . .. .... ... .... . .... .......... ... . .... ..... ... ....... . ......... . .. . ..
lowQualScore : 0 0 3333 4 9 11111 9 0 5 5 6 444 0 7 0 3 0 00 0 222 0 7 0 33 6 99 5 1 000 6 222222 2222 9 77 88888888888888 99999 1 3 22 66 8 8 33333 66666 2 1 99 1 888 1 0 88 2222 555 0000 8 5555 3333333333 777 7 5555 22222 000 4444444 7 777777777 7 33 7 44
consensus : NNTCAGTNAAGAGAACTGACCTCNA----CTGTCTCTACCA-ACATGATAA-----TGCCCCT-GCACATCGCGCACGGCGGACGACTGCTTACC-T---TC-AGACAAACAACGTTCAAGTGATGGATTGGCCCGCGTTGTCCCCAGACATGGCTCCTNTTGAGCATGTCTGGGATGAGCTCGGNCGGCGGGTCCGTG--CACGCG-TGCCTCCGCCAAG--AAACGTCAAANA-GNTACGCCACGCCAT--CGTTCATG---AGTGNAAC------AACATT----CTACAAGGTCGTATAGCTAC--CATAGT--------------GTCGTCCATGAGG-----CGTAGATGTCTAGCCN-GTATTGCGA--GTGGGGGATCATAC-----ACGCGGTATTAATTTGTGAATTTGACATGAAGCACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCCCA---TTTATTGCGATATATCAATGAAATTTG-CACAGA--TTAT----GCGTTTT---ATATTGTTATTGTTG----TGTATGA-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----TTAACA---CT-------GTT-AAAATCATCA---------TTGTACA-AC--C-TTTGCG--TTTCTAAATCGGTTGAGTGT
Reference ( family-88 ) : NNTCAGTNAAGAGAACTGACCTCNA----CTGTCTCTACCA-ACATGATAA-----TGCCCCT-GCACATCGCGCACGGCGGACGACTGCTTACC-T---TC-AGACAAACAACGTTCAAGTGATGGATTGGCCCGCGTTGTCCCCAGACATGGCTCCTNTTGAGCATGTCTGGGATGAGCTCGGNCGGCGGGTCCGTG--CACGCG-TGCCTCCGCCAAG--AAACGTCAAANA-GNTACGCCACGCCAT--CGTTCATG---AGTGNAAC------AACATT----CTACAAGGTCGTATAGCTAC--CATAGT--------------GTCGTCCATGAGG-----CGTAGATGTCTAGCCN-GTATTGCGA--GTGGGGGATCATAC-----ACGCGGTATTAATTTGTGAATTTGACATGAAGCACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCCCA---TTTATTGCGATATATCAATGAAATTTG-CACAGA--TTAT----GCGTTTT---ATATTGTTATTGTTG----TGTATGA-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----TTAACA---CT-------GTT-AAAATCATCA---------TTGTACA-AC--C-TTTGCG--TTTCTAAATCGGTTGAGTGT
gi|1 : TACAAGGTCGTATAGCCAT--CATATT--------------GTCGTTTATGACG-----CAAAGAT--------------TGCGA--GTGGGGAAT---A------ACGTAGTATT-----GTGAATTTGACACGAAACACCGATG-----GTATTCAGGACGTTTATT--ATA-TGCCCA---TTTATTGCGATATATGAATGAAATTTG-CACAGA--TTAT----GCGTTTA---ATATTGTTATTGTTG----TGTATGA-CATT----TAAA----------AAAGATTG--A-GT----TGTA-----TTAACA---CT-------G------------------------ATACA-AT--C-TTTGCG--TTTGT-AGTCGGTTGAGTGT
gi|1 : tTCTACAG-ACATGGTAA-----TTTGCCT-GCAC------------GGACGACTGTTTACG-A---TCTAGTGAAGCACCGTTCAAGTGATGGAATGGCCCGCGTTGTCCCCAGACATGGCTCTAGTTAAGCATGTCTGGGATGAGCTCGGGCGACGAGTCTTTG--CACGTG-TGACTCCGCCAAG--AAACGTTACAAA-GTTA--CTACCCCATGCCCTTCTTG---A-TG--------------------CCACACGCTCGCATAGCTTC--CATGGT--------------ATCGTTTATGAGcattaacgatgtgctaattcccgttgccatgccagtcatgaggcgccatttttacctgctggttagatctacagacatggtaatttgcctgcacggacgactgtttacgatctagtgaagcaccgttcaagtgatggaatggcccgcgttgtccccagacatggctctagttaagcatgtctgggatgagctcgggcgacgagtctttgcacgtgtgactccgccaagaaacgttacaaagttactaccccatgcccttcttgatgccacacgctcgcatagcttccatggtatcgtttatgag
gi|10 : tacactcaaccgactacaaacgcaaagattgtatcagtgttaatacaactcaatcttttttaaatgtcatacacaacaataacaatattaaacgcataatctgtgcaaatttcattcatatatcgcaataaatgggcatataataaacgtcctgaataccatcggtgtttcgtgtcaaattcacaatactacgttattccccactcgcaatctttgcgtcataaacgacaatatgatggctatacgaccttgtacattaacgatgtgctaattcccgttgccatgccagtcatgaggcgccatttttacctgctggttagaT--------------GTTGTACATAAGG-----CATAGCTGTC--------------AA--GTGGAGGATTATAC-----AAGCGGTATTAATTTGCGAGTTTGACATGAAGAGCCAATG-----GTATTCAGGACATT-GTT--ATG-TGCCCA---TTTATGGCGATTTATCAATGAAATTTG-TACAGA--TTGT----GTG-TTT---ATATGGTTATTGTTG----TGTATAA-AATT----CTAA----------TTAATTCT--A-TT----TGTG-----TTAACA---CT-------GTT-AAAATCATCA---------TTGTACA-AC--C-TTTGCG--TTTCTTGATCCGTTTAGTG
gi|11 : gG-----CGTAGATGTTT-GCCGTGTATTGCGA--GTGGGAGATCATGC-----ACGTGGCATTAATTTGTGAATTTGATATGAAACACCGATG-----GTATTCAGGACGTT-GTT--ATG-TGCCTA---TTTAGTGCGATATATCAATAAAACTAG-CACAGG--TTAT----GTGTTTG---ATATTGTTATTGTTA----TGTATGG-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----TAAACA---CT-------GTT-AAAATTATCA---------TTGTACA-A-----TTTG-------TTAAATCGAT--AATGT
gi|12 : cATGAAACTTA-CACATA--TTAT----GTATTTT---ATATTATTATTGT-G----TGTA--A-AATT----AAAA----------CAAAAATG--A-AT----TGTA-----TTAACA---CT-------GTC-AAAATCATCA---------TTGTACA-AC--C-TGTGAA--TTTCTAAATTGGTTAAG
gi|13 : TTGTGATTTTGACATGAAG-ACCGGTG-----ATATTCAGGAGGAT-GTG--TTG-TGTCCA---TTTATTGCGATA---------AATTTG-CACGGA--TTAT----GCGTTTT---ATATTGTTATTGTTG----TGCATAA-AATT----TGAA----------TACATTTA--A-AT----GGTG-----TTAACA---CT-------GTT-GAAATCAACA---------TTGTACA-AC--C-TCTGCG--TTTCTAAATCGGTCGAGTGagcgcactgaggatgacttatatgttacttacatctcattatatgttaccaatatctcattatatgtta
gi|14 : GCAACGCTG-----ATATTCAGGAGGT--GTT--TTG-TGCCCA---TTTATTGCGGTATTTCAAAGACATTTG-CACAGA--TTATAATTGCGTTTC---ATATTGTTATTGTTG----TGTATGA-AATT----TAAA----------TAAATTTG--A-AT----CGTG-----TCAACA---CT-------GTT-AAAATTATCA---------TTGTACA-AC--CTTTTGTG--TTTCTTAACCAGTTTAGTGT
gi|15 : ATAATGCACCGATGGGATGGTATTCAGGACATT-GTT--ACG-CGCCCA---TTTATTGTGATATGTCAATGAAATTTT-GAAAAG--TTAT----ACGTTTT---ATATTGCAATTGTTA----TGTATGAGAATT----T-AA----------TAAATTTA--A-AC----TG-----------------T-------GTT-AAAATCATCA---------TTGTATA-AC--C-TTTACG--TTTCTAAATCGGTTGAGTGT
gi|16 : AGCACCAATG-----GTATTCAGGACATT-GTT--GTG-TGTCCT---TTTATTGTGATATATCAATGAAATATC-CACAGA--GTAT----------T---ATGTTGTTATTATTG----TGCATGA-ATAT----TGAA----------TAAATTTA--A-AT----TGTG-----TTAACA---CT-------GTT-AAAATCCTCA---------TTGTATA-AC--C-TATGCG--TTTCTAAGTCGGTTGAGTGT
gi|17 : TCCGCCAG----AACATGGAAAATGGCACCTCACGA-AT--GGT--ATGGCAAATGAAACTAACACAACGTTAATGC-ACAAGGTTGTATAGCTAC--CATAGT--------------ATCATTCATAAGC-----CATAAATGTa
gi|17 : ttcctcTCTACCA-ACATGATAA-----TACACCT-TCATATCGCACATGGAGGATGACTGCCTACC-T---atctaccaacatgataatacaccttcatatcgcacatggaggatgactgcctacct
gi|18 : ttcctcacatttatggcttatgaatgatactatggtagctatacaaccttgtgcattaacgttgtgttagtttcatttgccataccattcgtgaggtgccattttccatgttctggcggaaTCAAGACATT------ATG-TGCCCA---TTTATTGCGATATATCAAT-------------AA--TTGT----GCGTTTT------TTGTTATTGCGG----TGTA------------TGAA----------TATATTTC--C-AT----TGCG-----TGAACA---CT-------GTT-TAAATCATCA---------TTGTACA-AC--A-TTTGCGATTTTATAAAGCGGTTGAATGT
gi|19 : -AGACAAACAACGTTCAAGTGACGTATTGGTCAGTGTGATCCCCAGATATCACTCTTATGGAGCATGTCTTGGATGAGCTCGGCCCGCGGTTCCGTGCACACACG-TGCCTCCGCCAAG--AAACGTCAAATA-AAAACGCCATGTCCT--CGTTGATT---CGTGAAtaaatccacaaataaatacttctgcca
gi|2 : TCAGTGAAGAGAACTGACCTCTA----CTGTCTTTATAA-ACTTGATAA-----TGCCCTT-ACACATCGCACACGGCGGCCGACTGTTTATT-G---TC-ATACAAACAACGTTCAAGTGATGGATTGGCCAGCACTGTCCCAAGACACGACTCCTTTTGAACATGTCTGAGATGGATTCGAACGGCGGGTCCGTG--CACGCG-CGCATCCGCCAAA--ACATGTCAGAGA-GATACGCCACGTCAT--CGTCCATG---AGTGGGAC------AACATT----CTACAAAGTCGTATAGCTAT--CATAGT--------------GTCGTCTA-GAAG-----TGTATACCTCGAGTCA-GTATTGCGAATGTAGGGGCTCATAC-----ACGCGGTAT---TTTGTGAATTTGACATTAAGCACCGATG-----GTATTCAGGACATT-GTT--ATG-TTCCCA---TTTATTGCGATAAGTCAATGAAATGTG-CACAGT--TTAT----TTCTTTTTTAAAATTTTTTTTG-TG----TGTACGA-AATT----TGAA----------TAAATTTG--A-AT----GGTT-----TTCACA---CT-------GCT-AAAATCATCA---------TTGTACA-AC--G-TTTGTG--TTTCTTAATCGGATGAGTGTtaaataaacaaa
gi|20 : cgCGGTG-----GTATTCAGGACGCT-CTT--ATG-TGCCTA---TTTATTGCGATAAAACAATGAAATTTA-CACATA--TTGT----GCATTTT---ATATTCTTATTATTG----CGTATGA-AATT----TAAA----------TGAA-TTG--A-AT----TGTG-----TT--------T-------AT-----ATCACCA---------TTGCACA-TC--C-TTTGTG--TATCTAAATCGGTTGAATG
gi|21 : AAGCACCGATG-----GTATTCAGAACTAT-GTG--TTG-TGCCCAT--TTTTTTGCGATATATCAATGGAATTTGTTACATA--TTAT----GCGATTT---GCATTGTTATCGTTG----TGTCTGA-AATA----TGTA----------T---------------------------------------------TT-AAAATCATCA---------TTGTACA-AC--A-TTTGCG--
gi|22 : tcaatgttcgaattatacttTTATCCCCAGTAATGGCTCCTTTGGAGCATGTTTGTGATGAGCTCGGACGGCGGGACCGTG--CACGCGATACA-CCGTAAAGAAAAACGTCAAATA-TTTAGGCCACACCCC--CGCTCATG---AGTGGAAC------AACATT----CAACAAAGTTGTATAGCTAC--CGTAGT--------------GT
gi|23 : TCAATAAAGCAAACTGACCCTGA----CTGTCTTTATCATAT-TGATAA-----TGGCA-T-GCACGTCGCACACGTCGGCCGACTTCTCGCAAT---TC--TACAAACACCGTTCAAGTGATAGATTGGCCTTCATTGTTCCTAGA
gi|24 : tct-GCACATCGCGCACGGCGGACAACGGCTGACA-T---TT-AGACAAGCAATATTTAAGTGATGGATTGGCTCGCGTTGTTCCCAGATATGGCTCCTATTGAGTATATACGGGACAAG
gi|25 : ataACGACTGCTTACC-TAAATC-AGACAAACATCGTTCAGGTGATGGATTGACCGGCGTTATCCCCAGTTATGA----TCTTGAACGT
gi|26 : ttacacataaccaagtcagaaacATT----TGAA----------TAAATTTG--A-AT----TGTG-----TTAACA---CTA------GTT---AATCATCC---------TTGTACA-AC--C-TTTGCG--TTTCTAAA--AGTTGAATGTtgttt
gi|27 : atAATGAAATTTG-TACATA--TCAT----GCGTTTT---ATATTGCATTTGTTG----TGTATAA-AATT----TA-------------AAATCT----------------------------------------------TCATTA---------TC---CA-AC--C-ATTACT--TTTCTAAATCGGTTGAacaattaaaaattattcaattt
gi|28 : TG----TGTATGA-AAAT----TGAA----------TGAACTTG--ATATGAAATGTG-----TTAACA---CT-------ATT-AAAATTATCA---------TTGTACA-ACATG-TTTGCG--TTTCTAAATCGGTTGAGT
gi|29 : aTCTGTTAAGAGAACTGACCTCCGTTGTCTGTCTTTATCA-ACTTGATAA-----TGCCTAT-ACACAACACGAACAGCAGACAACTGCTTA
gi|3 : aTACAAGGCTGTGTAGCTAC--CATAGT--------------ATTGTCTATGAGG-----TGTAGAAGTCTAGCCA-GTATTATGA--GTGGGGGATCATGC-----AAACGGTATTAATTTGTGAATTTGGCATGAAGAACCGATG-----ATATCCAGAACAAT-G-T--ATGTTGCCCA---TTTATTGCGACATATCAATGGAATTTG-CACAGA--TTGT----GCATCTT---ATGTTGCTATTGTTA----TATATGA-AATT----TAAA----------TAAATTC-------------TG-----TTAACA---AT-------GTTAAAAATTGTTG---------TTGTACA-AC--C-TTTGCA--CTTCTAAATCGATCGAGTGTt
gi|3 : TCTACTA-ACATGATAACTTGATGCCCCT-GCACATTGCAATTGGAGGATGACTGCTTACC-T---TC-AAACAAACAACATT---------GATTGGCCTGTGTGATCCCCAGACATTGCTCCTATAGAGCATGTCTGAGA----------------GT--GTG--CCCGTT-TGCCTTTGCCAAG--AAATGTCAGAGA-ATTACACCATGCCAT--cattaaccatgtgttagttcctgttgccaatgccctgcatgaagtgccatttcccacatgctggtgaaatctactaacatgataacttgatgcccctgcacattgcaattggaggatgactgcttaccttcaaacaaacaacattgattggcctgtgtgatccccagacattgctcctatagagcatgtctgagagtgtgcccgtttgcctttgccaagaaatgtcagagaattacaccatgccat
gi|30 : acactcgatcgatttagaagtgcaaaggttgtacaacaacaatttttaacattgttaacagaatttatttaaatttcatatataacaatagcaacataagatgcacaatctgtgcaaattccattgatatgtcgcaataaatgggcaacatacattgttctggatatcatcggttcttcatgccaaattcacaaattaataccgtttgcatgatcccccactcataatactggctagacttctacacctcatagacaatactatggtagctacacagccttgtacattaaccatgtgttagttcctgttgccaatgccctgcatgaagtgccatttcccacatgctggtgaaaTT----TGAA----------TAAATTTG--A-AT----TGTT-----TTAACA---TT-------GTT-AAATTCAGCA---------CTGTGCA-GA--C-ATTGCA--TTTCTAAATCGCTTAAGTGT
gi|32 : tACAGA--GTGT----GCGTCT------GTTGTTGTGGTGG----TGTATGA-CATT----TGAA----------AGAAATTG--A-AT----TGTG-----TTA
gi|33 : GA-AATT----TGAA----------TAAATTTG--A-AT----TGTG-----TTAACA---C---------TT-AAAATCACC
gi|34 : ttagaaacga-T---TT-AGGCAAACAACGTTCAAGTGACGTACTGGTCCGTGTGGTCCCCAGACA
gi|35 : AGA-----CGTAGGTTTTTAGCCT-GTATTGCGA--GT-GAGGATCATGC-----ACGTGGTA
gi|36 : -AAAATCCTCA---------TTGTACA-AC--C-ATAAAG--TTTCTCAATCGGTTGGGTG
gi|37 : tgAAATCGTCA---------TTGTACA-AC--A-TTTGCG--TTTC-AAACCGGTCAAGTGT
gi|38 : tTGTTCCCAGACATGCCTTCAATTGAGCATGTCTGGGATGAG
gi|4 : TACATGGTTGTATAGCCAC--CATAGT--------------GGTGTATATGAGG-----TGTAGATGTCAAGCCT-GTATTGCAA--GTGGGGGATCATAT-----ATGAGATATTAATTTGTGAATTTGACACAAAACACCGATA-----GTATTCAGGACATT-GTTAAAAG-AAGCCA---TT--TTGTGA-ACAACAATGA
gi|4 : tacaaaacattccaTCTGCCA-AGGTGATAA-----TGCCCCTAGAATATCAAACATGGAGGACGACTGCTTACC-T---TT-AGACAAACAACGTTCAAGTGATGGATTGGCCTGTGTATTCTCCAGATACGGCTCCTTTTAAGCATGTCTGAGATGAGTTTGGTCAACAGGTCCATcattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaatctgccaaggtgataatgcccctagaatatcaaacatggaggacgactgcttacctttagacaaacaacgttcaagtgatggattggcctgtgtattctccagatacggctccttttaagcatgtctgagatgagtttggtcaacaggtccatcctttcttcataagtgcaacaacattccacaaggccatgtagctatcatagtgtgttccatgaggcatagatgtctagccagt
gi|4 : tacaaaacattccatcattgttgttcacaaaatggcttcttttaacaatgtcctgaatactatcggtgttttgtgtcaaattcacaaattaatatctcatatatgatcccccacttgcaatacaggcttgacatctacacctcatatacaccactatggtggctatacaaccatgtacattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaaGTCAA-CA-GGT---CCATCCTTT--C-TTCATA---AGTGCAAC------AACATT----CCACAAGGCCATGTAGCTAT--CATAGT--------------GTGTTCCATGAGG-----CATAGATGTCTAGCCA-GTcctttcttcataagtgcaacaacattccacaaggccatgtagctatcatagtgtgttccatgaggcatagatgtctagccagt
gi|5 : tacaaaacattccatcattgttgttcacaaaatggcttcttttaacaatgtcctgaatactatcggtgttttgtgtcaaattcacaaattaatatctcatatatgatcccccacttgcaatacaggcttgacatctacacctcatatacaccactatggtggctatacaaccatgtacattaatgatgtgctagttcttttgaccatgccattcatgaagtgcctttttcaatgtgctggtggaatctgccaaggtgataatgcccctagaatatcaaacatggaggacgactgcttacctttagacaaacaacgttcaagtgatggattggcctgtgtattctccagatacggctccttttaagcatgtctgagatgagtttgATTTATNNNNNNNNNNCGACACATCAATG-----ACATT--------T-GTT--GTA-TGCCTA---TTTATTGCGACACATCGATGACATTTA-CACAGC--TTAT----GCGTTTG---ATATTGTTATTGTTGTTATTTTGTGA-AGTTGACATGAAACGCTGATGGTAATCTTGTTC-AG----TGTGAAATTTTAATAAATCTTAATTGTGTT-AACACTATCAAAATCAATATTATACA-AT--C-TTTGCG--TTCCTAAATCGGTTGAAT
gi|5 : taaaagatagcatcccaatatgaacatctAGT--------------GTCATCTATGAGG-----CGTGGATGTCTATCTT-ATATTGCGA--ATGGAGTAGCATAC-----ACGCGGTATTAATTTGTGAATTTGGCATGAACCACCGATG-----GTATTCATGACGTT-ATT--GTA-TACCTA---TTTATTGCGACACATCAATGACATTTG-aggcatacaacaaatgtcattgatgtgtcgcaataaataggtatacaataacgtcatgaataccatcggtggttcatgccaaattcacaaattaataccgcgtgtatgctactccattcgcaatataagatagacatccacgcctcatagatgacact
gi|6 : taaaagatagcatcccaatatgaacatctattcaaccgatttaggaacgcaaagattgtataatattgattttgatagtgttaacacaattaagatttattaaaatttcacactgaacaagattaccatcagcgtttcatgtcaacttcacaaaataacaacaataacaatatcaaacgcataagctgtgtaaatgtcatcgatgtgtcgcaataaataggcatacaacaaatgtcattgatgtgtcgnnnnnnnnnnataaataggcatacaaTACATAGTCGTTTAGTTAC--TATAGTACCGTTTCTTTAGCGTCGTTTATGAAG-----CATAGATATCAAGTTT-GTAATGCAA--G---------A-AC-----ACGCGGTACTAATTTGTGAATTTGACATGGAGCACCAATG-----GTATTCAGGTCATT-GTA--ATA-TACCAAAGATTTAT---GGTGTATTTATGAAAATTG-CACTGA--TTAT----G-------------TGTTAATGTTG----TGTATGA-AATC----TGCA----------TAAATTTG--A-AC----TGAG-----TTAACA---CT-------GTT-AAAATTACCA---------TTGTGCA-AC--C-TTTGCG--TTT-TATATCGGTTCAGTGT
gi|6 : -ACATGATAA-----TGTCCTT-GCATATCGCGCACGGAAGACGACTGCTTACC-T---TC-AGACAAACAACATTTTAGTGATGGCTTGccttaaatatatactagttgccgtgccagtgtttacatgctgatggaatttattcacatgataatgtccttgcatatcgcgcacggaagacgactgcttaccttcagacaaacaacattttagtgatggcttgcg
gi|7 : acactgaaccgatataaaacgcaaaggttgcacaatggtaattttaacagtgttaactcagttcaaatttatgcagatttcatacacaacattaacacataatcagtgcaattttcataaatacaccataaatctttggtatattacaatgacctgaataccattggtgctccatgtcaaattcacaaattagtaccgcgtgttcttgcattacaaacttgatatctatgcttcataaacgacgctaaagaaacggtactatagtaactaaacgactatgtaccttaaatatatactagttgccgtgccagtgtttacatgctgatggaatttattcGTCTAGCTAGTACATAGT--------------GTCATCCATGAGG-----CATATATGTCTAGCCA-GTATTGCGA--GCGAGATATCATACAATACACGCGGTATTAACATGTGAATGTGACATGAAGCACTGATG-----ATATTCATGACAAT-GAT--ATG-TGTCCC---TCTGTTGTGATGTATCAATGAAATTTG-CACAGG--TTAT----GGGTTTT---ATAATGTTATTGTTG----TGTATG-------------------------------G--A-AT----TGTG-----------------------G-T-AAAATCATCA---------TTGTACAGGA--C-TTTGCA--TTTCTAAATTGGTTAAGTcg
gi|7 : --CATAGT--------------GTCATCCATGAGG-----CATAGATGTCTAGCTA-GTAatctatgcctcatggatgacactatgtactggctagacatnnnnnnnnnncctcatggatgacactatgtactggctagacatctatgcctcatggaacacactatgatagctacatggccttgtggaatgttgttgcacttatga
gi|7 : acttaaccaatttagaaatgcaaagtcctgtacaatgatgattttaccacaattccatacacaacaataacattataaaacccataacctgtgcaaatttcattgatacatcacaacagagggacacatatcattgtcatgaatatcatcagtgcttcatgtcacattcacatgttaataccgcgtgtattgtatgatatctcgctcgcaatactggctagacatatatgcctcatggatgacactatg--CATAGT--------------GTCATCCATGAGGNNNNNNNNNNATGTCTAGCCA-GTAtactggctagacatnnnnnnnnnncctcatggatgacactatgtactggctagacatctatgcctcatggaacacactatgatagctacatggccttgtggaatgttgttgcacttatga
gi|7 : acttaaccaatttagaaatgcaaagtcctgtacaatgatgattttaccacaattccatacacaacaataacattataaaacccataacctgtgcaaatttcattgatacatcacaacagagggacacatatcattgtcatgaatatcatcagtgcttcatgtcacattcacatgttaataccgcgtgtattgtatgatatctcgctcgcaatactggctagacatatatgcctcatggatgacactatgtactagctagacatctatgcctcatggatgacactatgTCATA---AGTGCAAC------AACATT----CCACAAGGCCATGTAGCTAT--CATAGT--------------GTGTTCCATGAGG-----CATAGATGTCTAGCCA-GTAtactggctagacatctatgcctcatggaacacactatgatagctacatggccttgtggaatgttgttgcacttatga
gi|8 : acttaaccaatttagaaatgcaaagtcctgtacaatgatgattttaccacaattccatacacaacaataacattataaaacccataacctgtgcaaatttcattgatacatcacaacagagggacacatatcattgtcatgaatatcatcagtgcttcatgtcacattcacatgttaataccgcgtgtattgtatgatatctcgctcgcaatactggctagacatatatgcctcatggatgacactatgtactagctagacatctatgcctcatggatgacactatgtactggctagacatnnnnnnnnnncctcatggatgacactatgTACAAGGTCGTATAGCTAC--CAACGT--------------GTCGATTATAAGT-----TTTAGATGACTAACCT-GTATTGTGA--GTTAGG-ATTATAC-----ACACGGTACTAGTTTGTAAATTTGACATGAAGCACCGATT-----GTATTCGGGACGAC-GCC--ATG-TGCCCA---TTTATTGCGATATATCAATGAAATTTG-AAAAGATGTTAT------ATTTT---GTATCGTTTTTGATA----TGTAAGA-AACT----TGAA----------T---TTT------T----TTTA-----TTG-------T-------GTT-AACATCATCT---------TTGTACA-AC--A-TTTCCG--TTTCTAAACCGGTTATGTGT
gi|8 : tGTATCTATCA-ACATGATAA-----TGCACCT-GTACATCGCGTACGGCGAACGACTGCTTAAC-T---tattagcgatgtgctagtatccgatgccatccatgaagcgccattgatttacttaccggtagtatctatcaacatgataatgcacctgtacatcgcgtacggcgaacgactgcttaact
gi|9 : tacacataaccggtttagaaacggaaatgttgtacaaagatgatgttaacacaataaaaaaaattcaagtttcttacatatcaaaaacgatacaaaatataacatcttttcaaatttcattgatatatcgcaataaatgggcacatggcgtcgtcccgaatacaatcggtgcttcatgtcaaatttacaaactagtaccgtgtgtataatcctaactcacaatacaggttagtcatctaaaacttataatcgacacgttggtagctatacgaccttgtatattagcgatgtgctagtatccgatgccatccatgaagcgccattgatttacttaccggtaCGTATATTTAC--AAAAAT--------------TTCGTTTGTGA-------------TGTCTAGCCT-GTATTGCAA--GTTTTGGACCATGT-----ACGTGGTAGTATTTTGTGAATTTGACATGAAGCCCCGATG-----ATATTCAGGACGTT-GAT--TTG-TGTTCA---TTTATTACGGTAAATCATTAAAA--------AGG--TTAT----GCGTTTT---TTTTTGTAATTGTTG----TGTAGGT-AATT----TAAA----------TAAATTTG--A----------G-----ATAATA---CT-------GCT-----TTATTG---------TTGTA-A-AC--
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|31 ): TTAGATGTACGGCACATGGTAATTTACATATTCGGACGACCGTTTCGCGACCGTAAAGCAC