lowQualScore : 1111 333333 222 111111 22222222 5555555555555555 1 222222 1111111111111111111 8888888888888888888888888888888888888888888888888888888 1111111 1111 11111111 333333333333333 11 444444444444 3333333333 999999999999999999999999999999999999 111111 111111 11111 222222 1111111111 2222222 4444444444444444444444444444444444444444444444444444444444444 33333333333333333333 11111 666666 111111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555
lowQualScore : 5555 111111 4 5 333 5 222222 22 55 2 4 5555 55555555 888 7 5555555555555555 1 333333 4 2 6 6666666666666666666 4 2 6666666 7777777777777777777777777777777777777777777777777777777 33 2 4444444 2 2 0000 5555 6 2 6 3 4 2 888888888 22 2 777777 00000000 3 1 444444444444444 44 3 2 3 77777 2 22 66666 3 555555555555 555 44 77777 2 2222222222 2 4 33 000000000000000000000000000000000000 33 66 6 666666 0 555555 00000 888888 3 66 3333333333 2 6666666 2 88 3333333333333333333333333333333333333333333333333333333333333 3 77777777777777777777 44 22222 3 222222 0 44 44 77777 8888 3 44 3 111111 5555 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3
lowQualScore : .... ...... . . ... . ...... .. .. . . .... ........ ... . ................ . ...... . . . ................... . . ....... ....................................................... .. . ....... . . .... .... . . . . . . ......... .. . ...... ........ . . ............... .. . . . ..... . .. ..... . ............ ... .. ..... . .......... . . .. .................................... .. .. . ...... . ...... ..... ...... . .. .......... . ....... . .. ............................................................. . .................... .. ..... . ...... . .. .. ..... .... . .. . ...... .... ...................................................................................................... .
lowQualScore : 0000 000000 6 0 666 0 444444 11 44 2 0 7777 22222222 999 3 3333333333333333 8 222222 2 7 0 7777777777777777777 5 9 4444444 2222222222222222222222222222222222222222222222222222222 44 5 4444444 4 4 5555 3333 6 5 1 1 1 5 222222222 88 5 222222 44444444 3 9 222222222222222 22 1 6 8 77777 8 11 66666 1 777777777777 000 33 11111 9 6666666666 9 4 22 888888888888888888888888888888888888 99 22 8 444444 4 888888 88888 666666 1 22 2222222222 9 2222222 9 55 1111111111111111111111111111111111111111111111111111111111111 1 44444444444444444444 22 00000 1 444444 6 22 22 77777 6666 1 22 6 999999 7777 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6
consensus : AAGTGATGCNGAATAGG-GGACCGATGTAA-A-C-A-TG-GCGG-TACTGTTAANTTTAGT-T-T--TT--T-CN--GAAANGGTAGCT-GGC-GG---C-G-C---ATATTAACTTCTTTATTTATTA-----ACCGATTT-TAATAATGTT--TA---T-----------ATGTT-T--A----GAAA-GC---TTA----AGA-----------T-----G-T-----TTC------CGA--AACTGAAAA--GATA-ATTAA------AA-T-CCATTATCAAA---T----GAATGAGATAC-AGACAGTTGAACTGAGCTGGT-CAT------T--GCGATTA-A------ATT--------TACACAATATTTTTC--GCTCG---G---A--A-AAACCTGGCGG-----TACCCTTT---TAAC-TTTTT-----C----ATTTATTA---TTCGAT-----T-TTAA-A-ATTC-TTT-ATATTTCTATGTAAGAAACATAATGTAGTTC--TAGGAAA----GCT-----TA------AA--GTTATTGAAAA-TCGATCAAG-AATTACAGAAGATAC-A-C-CTTTC-----AAAATACG-T----AC-TGAAAATATAT--TAT-----TTCGCAT-TAAATTTTN-CNG-TTGG-AAAAAA---C--A-GGCG---GTA----C-CCCTTAA------------AA-TC-T--T-TATACT-TTTATTT-ATATGA--A--TA--ATG--CTG---A--AGTTCTGTA----GTTT-TATGTG---G-ATATAAACAA--AAT--CAA-----ANTCGG-A--TAATTTGAAGAC------AAATAATAAAG----AT---CTN-TGAG---TA---AAA---------TTN------TGA----------A-------AA--CT-C--A-----AT-N-C-TGA---TTGG-G-A---GAA-TTTTGAA
Reference ( gi|6 ) : AAGTGATGCAAAGTAAG-CGGCTGGTGTAA-A-T-A-TG-ACAA-TACTGTTAAATTTAGT-T-T--TT--T-CT--GAAAGGATAGCT-G-C-AA---C-T-C---ATATTTATTTCTTTATTTATTT-----ACCAATTT-TAATAACGTT--AA---T-----------ATATT-T--A----GAAA-AA---TCA----AGA-----------T-----G-T-----TTC------CGA--AACTGAAAA--GATA-ATTAA------GA-T-CCATTATCAAG---T----GAATGAGGTAC-AGGCAGTTAAACTGAGCTGGT-CAT------T--GCAATTA-A------ATT--------TACACAATATTTTTT--ACTTG---G---A--A-AAACCTGACGG-----TACCCTTT---TAAC-TTTAC-----C----ATTTATTA---TTTGAT-----T-TTAA-A-ATTG-CTT-ATGTTTCTATGTAAGAAACATAATGGAGTTC--TGGTAAA----GCTTAGTATA------AA--GTTATTGAAAA-TCGACCAAG-AGTAATAGAAGATAC-A-C-CTTTC-----AAAATATG-A----AC-TGAAAATGTAT--CAT-----TTTGCAT-TAAATGTTT-CCG-TTGG-GAAAAA---C--A-GTTG---GTA----C-CCCTTAA------------AA-CC-T--T-TACACT-TTTATTT-ATATGA--A--TA--ATA--ATA---A--AGTTCTGTG----GTTT-TATGTGTCAG-ATATAAACAA--AAT--CAA-----AATCTG-A--TAATTTGAAAAC------AAATAATAAAG----AT---CTG-TGAG---TA---AAA---------TTA------TGA----------A-------AA--CT-C--A-----AT-T-C-TGA---TTGG---A---GAA-TTTTGAA
gi|13 : AAGTGATGCAGCATAGGGCAAC--ATGTAA-AAC-A-TG-GCGA-TACTGTTATATATA-T-A-T--TT--T-TA--GAAATGGTTACT-GGC-AG---T-G-C---ATATTGACTTCTTTAATTGTTA-----ACCGATTT-TAATAATGTT--AA---CTGATTTTAATCATGTT-TTAA----GAAA-GC---TTA----GGA-----------TATTTTG-T-----TTT------AGA--AACTGAAAA--GATA-ATTAA-------A-T-CCATTATCAAA---T----GAATTAGATAT-AGACATTTAAACTGAGCTGGT-CAT------T--GCAATTA-A------A------------------GTTTTTC--CCT-----G---A--A-AAAAATGATGG-----TACCCTTT---TATT-TTT
gi|1 : gttgcaaccaacctccactggtctggttcactccacttcctgttctgaacaatacttagacttactgtatgcaggttattgtctaacaagttcTGCTGAATAGG-GGATCGTTGTAA-AAC-A-TG-GCAC-TACTGTTAACTTTTTT-T-T--TT--TTCT--GAAAGAGTAGCT-G-C-TG---G-TGC---ATATTAACTATTTTATTTATCA-----ACTGATTT-TAATATTGTT--TA---T-----------AGGTT-T--A----GAAA-GC---TTAGAACATA-----------T-----ACT-----TTT------CAA--CACTGAAAA--AATA-ATTAA------AA-T-CCATTTTTAAA---T----GGATAAGATAA-AGACAGTTAAACAGAGCTGGT-TAT------T--GTGATTA-A------ATT--------TACACAA-A-TTTTT--A--TC---A---A--A-AAACCTGGCGC-----TACCTTTTAAATACC-GTTTT-----C----ATTTATTA---TTTAAT-----T-TTAA-T-ATTG-TCT-ATATTTCTATGTAAGAAACATAATGTTATTC--TGGGAAA----GCTT------------AA--GTTACTGAAAA-GTGATCAAG-AATTACAGAAGATAC-A-C-CTTTT-----AAAATATG-T----AC-TGAAAATAAAT--TAT-----TTCCAAT-TAAATTTTG-CAG-ATGG-AAAAAA---C--T-GGGG---GTA----C-CCTTTAA----------------T-T--T-TCCA---TTTATTt
gi|2 : taagtttaacataaattaggaaattacttggtaatgcgcagctaaaatgcgtcatataatggtcagtgcatattcactgtgtaaaagtgatgtatatatacaattgAATAAG-GGACAGGTGTAA-A-A-AATGGACGG-TACTGTTAACATTAGTGT-TAATTAAT-CT--G------TAACT-GGC-TA---C-G-C---AAATTAAACTCTTTATTGATTA-----ACCATTTT-TAATCATGG---AA---T--------------CT-T--A----GAAT-A----TCT----AG--------------------T-----TTA------TAT--AACAGAACA--GATG-GTTAA------TA-T-CCATGATCAAA---T----GCATGAGACAC-AAACAATTGAAAGGAGATGGT-CATAACGATT--ACA-TTA-A------ATTGACTCGTTTACACGATACTTTTC--GCTCG---A---A--A-AATACTGGCAG-----TACCCTTT----GAC-TTTTT-----TTTTTATTTGTTA---TTCGATACGATT-TCGA-T-ATT--CTTGACATTTTT-T-TAA-----ATAATA------------AGA----AC---GT-TA------AT--GTTA--GAAAAATCGATCAAG-AATTACAAAAGATAC-AAC-CTTTA-----CATATATGTACGGTAC-TGAAAATATAT--TTG-----TTCGCAT-TAA-T-CTT-GCG-TTTG-AAAAAA---C--ATGGCG---GTA----C-CGCTTAA------------AA-TG-T--T-TG-A-T-TTTATTG-ATATGA--A--TA---TA--ATGCTGA--AGTTCTTTA----GTTT-TATATG-----ATATCAACAA--AAT--AAA-----AATCTG-A--TCATTTGAAGAC------AAAAAATAAAG----AT---gttcggttttaatattatttacatttctatgtaagaaacataatagagttttaagaaagctaaagttattgaagagtgatcaagaacaacagaagatacagcctttcataatatgtgctgaaaatatattatttcaaaattaaattttgaaatggaaaaattttgtttttcagattttaacttacactt
gi|4 : acaattgtgtcgTAAG-GAACAGATGTAAGA-C-A-TG-GTGG-TTTTGGCAAACGCAGT-T-T--TT--G-A---GAAAGGGTAGCT-G----G---T-T-GGGAATCTTAGCGTCGTTATTTATT-------------------AATGTT--TA---T-----------ATGTT-T--A----GAAA-TA---TTA----CAA-----------T-------------TTC------TAGTTAA-TGAAAA--TATA-ATTAA------AA-C-TCATTATTCAA---T----GAATTAGATAC-AGACAGTTAAACTGACCTGGT-CAT------T--GCGATTATATTTCATATT--------TACACAATATCTATC--GCTC----G---A--A-AAGCATGCTGG-----TACC--TT---TAAT-TTTTT-----T----AATTATGA---TTCGAT-----T-TTAT-A---TGTTTT-ATATTTCTGCGTATGAATCATAGTGTTGTTCTATGG--AA----G------ACA------AA--GTTATTGAAAA-TCAATCAAG-AATTTCAGGAGTTACAA-C-CTTTC-----ACTATACG-A----AC-TGAAAATATATAGTAT-----TTCACAT-TGAATTTTA-CGG-TTGG-AAAAAA------A-CCTGGCAGTG----C-CCCTTAAGTATATTATTTTAA-TT-T--T-GA---T-TTTATTT-ATATAAGTA--TA--ATG--CTG---A--AATTATGTA----GTTT-TATGTGT-----TATTTACAT--AAT--CAA-----ACTTGG-A--TAATTTAAACAC------AAA-AA-AAAG----A----CT----AC---TG---AAATCTGACTTTTTG------TG-----------A-------AA--TT-T--A-----AT-C-T-TGG----TGT---A---GAAGTTTTAAAggactactgacatctaactcttggggagttttaatcttggagtagaactttaaaaactcaatgctgattggagtagaattttgaaaactcaattctaattagagtaggatttcgaaaa
gi|20 : ttgtaacacatattttcactgtgtaaaagggagtactcagttttgtcgacTGATGTAG-A-TTA-TG-GGAAATGCGGT---ATT--GT-T-A--TT--T--T--GAAATGGTAGCTTG-C-GG---T-G-C---ATATA-ATTACTTTATTTATTA-----ACAGATTT-TAATTATGTT--actcaatgctgcttaggagttg
gi|3 : accccactggacgggtttattcagaaaaatatgaagactggctacgttatgcagtgtaacacgtagaagGTAA-AGC-A-TG-ACAC-TGCTG----ATTAAGT-T-T--TT--T-A---GAAAGGGTAGTT-G-CTAA---CGTGC---ATATCAATTTCTTTATTTATTA-----ACCGACTT-AAATAGTATT--CA---T-----------ATGT----------------G---TCG----AGAG----------C-----G-T--------------------------AG--GATA-TTTAG------GT-T-CCA--A--AAC---T----GAA------A--AGATAATTGAACTAAGCCGGT-TAT------T--ATGACTA-A------ATT--------TACTCAATAGTTTTT--ATTTA---GCCTATTA-AAACCAGACGG-----TA----TT---TGTT-TTT------------ATATAATA---TTCGAA-----T-TTAA-T-ATTT-CTG-GTATTTCTGTGTCAG-AACATAATGTAGCTC-------AC----G--------A------AA--GCTAT--AGAA-T----CAAT-AATTACAGAAAATAC-ATC-CTTTC-----AAAGTAGG-C----AC-TGAAAATATAT--TACCGGTATTTA-ATATAAACTTTT-GCG-GTTG-GAAAAA---C--G---TA---GCAATTTC-CCAGT-A------------AA-TA-T--T-TTCAAT-ATTGTGT-TTATGAACA--TA--CTT--CTG---A--AGTTCTTTC----ATTT-TATGT----G-ATATAAACAA--TAT--CAG-----A--CTA-AGTTGATTTCAAGAA------AAATATTAAAA----AT---taagtgatttgaatgctgaat
gi|12 : ttactatgtattaattatgtgtacagttatatcgaatattggacattaTAA-A-C-C-TG-GTGG-TAGTGTTAAGATTAGG-T-A--TA--T-AA--GAAAGAGTAGTT-G-G-TGGTTC-T-T---ATACTTACTTATTTATTCATTA-----ACCGATTTATAA-AATGTT--TA---T-----------A-ATT-T--T----AAAA-AGCT-TCA----TTA-----------TCTT--G-T-----TTC------TGA--AACTGAAAA--TACA-TTTAG------AA-T-CCATTATCAAA---T----GAAAGAGATAC-AGACAGTTGAAATGAGTTGGT-GAT------A--GCGATTA-A------ATT--------TACAAAATATTTTTC--GCT-G---G---A--A-AAACTTGTCAG-----TAGC-TTT---TAAC-----------------TTTTTCA---CTT-AT-----TATTGA-A-A------------TTCAATGTA---------------TTC--TG-TA--------TT--TATATTTTTTGA--ATAATTGAAA--TCGATCAAG-AATTTAAGAAGA--------------------AATACA-T----AC-TGAAAATATAT--TAT-----TTTGCAT-TAAATTTTG-CTG-ATGA-AAAGAC---C--T-GGCG---ATA----C-TCCTTAA------------Agaactcctgaaatctggcgtttggtgagtttaaatctttgagtacaattgtgaaaactcagtagtacttcgagtagaatttcgaaaaaatataatcccatatctccaagaagccgcctgcagagcagcgctttgatt
gi|19 : gaaaggaccagtttAA-A-T-A-AA-GCAG-CACTGTTACTTTTAGT-TGT--TT--T-CTTAGAAATGACAGTTGG-C-GG---T-G-C---CTATTTATTT
gi|9 : tttgacgtcgtgtaatcactggactggttcactcttatttcctgtttggaaaattacgtagactggcttatgtaagcagtttattgtgtaaaacgtaatcgtaattgacagtataataaggaaaatatttaGT-T-T--AT--T-CA--GAAA--ATA--T-G-T-AGGGGT-T-T---ATATTAACATCTTTGTCAATTTTGTTAACCGATTT-TAATAATGTT--CA---T-----------ATGTT-T--A----GAAA-GC---TGA----ATATATCT------T-----G-T-----TTT------CGA--AACTGAAAA--GATA-ATTAA------AAGT-CCATTATCAAA---T----AAATAAGATAC-ACACATTTAt
gi|26 : GT-T-T--TT--C-CA--AAAATGGTAGCT-GGC-GA---A-G-C---ATATCAATT-CGTTATTGGTTA-----ACCGGTTT-TGATAATACT--TA---T-----------ATGTT-T--A----GATA-GC---T-------GA-----------------------------------GA--AACTGACAT--GATA-GTTAA------AA-T-CAATTttattcaattttgaacattctttatatgtctagttcaaacataatgtagttctaggaaagctaaagttattgaaaatagatcaagactgacagaaggtacacctgaagtctttatattttaatttatatgaatataatgctgaagttttgtagttttatgtgatataacaaaatcaaattcagatgattggaagacaaataataaagttggactactgaaatttgaatctagggaattttcaattgttgagtagaattttgaaaactcgatgcaacttggagaagatttttgaaaaatgtcttaatctacttttccgtcaccatcccaagacttttagcgctcacagtgctttgattaaatattggacaaattagtaaaaatgc
gi|7 : AAAAGGTAGCT-GGC-AG---T-G-C---ATATATTCTTCTTTATACATTA-----ACCGATTT-TAATAATTTT--TA---T-----------ATGTTGT--ATGTTGAAA-GAACTTAA----AGATTAAAATATTTT-----G-T-----TTT------CAA--AACGGAAAA--GAAA-ATTAA------GA-TAATATTATTAAGGAATTTAGGAATGAGATAC-ATACAGTTAA-------------GT------T--GCGATTA-A------AAT--------TATACACTACGTTTT--GCTT--------A--ATAAACCTTGCGG-----TA-CTTTT---TAAC-TTT-CTTTCTC----ATTTATAA---TTGGAT-----A-TTAA-T-ATAA-TTT-ATATTTCTATGTAAGGTATATAACGTAGTTC--CAGGAAA----GC------TA------AA--ATTATTAGAAA-TCGTTCAAC-AATTACGGAA-ATAA-A-C-TTTTC-----AAAATACT-C----CC-TTAAAA-GT------T-----TTTCCAT-TAAA--TTT-GCGATTGG-AAAAGT---C--T-GGCG---GTA----C-CCATTTA------------AT-TA-T--T-T-TAGC-TTTATTT-ATATGA--C--TATTATG--CTC---A--GGTTCCATA----GTAT-AAT-----AGAATGTTAACAATTAATGACAA-----A---CG-A--TAAtaaacatgaaat
gi|8 : tatttgagaATTTCTTT-TTTGTTA-----ACAGATTC-GAACAATGCT--TA---T-----------ATGAT-T--A----GAAG-C----TTA----AGA-----------T-----A-T-----TTTATTTTTTGA--AACTGAAAA--GATA-ATAAA------AA-T-AAATCATCATA---T----GAGTGAGATAC-TGACAATTGAACTGAGTTGGT-CG-------------ATCA-A------ATT-----------ACG------------CTTG---A---A--A-AAAT-TGACGG-----TACCCTTT----AAC-TTTA----------------------TTTGAT-----T-TTAA-T-ATTC-TTT-ATATAACTATGTAAGAAACATAATTTAGTTC--TGA-AAA----GCTT------------AA--GTCATTGAAAA-CCAATAAAA-AATTATTGAAGATAC-ATC-CTTTC-----AAAATATG-T----AC-TGAAAATATAT--GAT-----TTCACAT-AAAATACCT--------------AG---C--A--------GTA------CCCTTAA------------AA-TA-T--T-TATACT-TTCATTT-ATATGA--ATGTA--ATG--CTG---A--AGTTTTGTA----CTTT-TATG----AG-ATAT-GATAT--AAT--TAT-----AA-CTGAA--TAA-TTGAAGAC------AAATAATAAAG----ATGGACTACTGAAATCTG---ACA---------CT-------TGG----------A-------AATTTT-T--A-----AT-G-CATGA-----GT---A---GAA-TTTTGAAgatactactgatactactattgatactactgaaatctgactctcaaatttcaatattgaagtatagttatggaaac
gi|17 : ttagaaatggtactggttgtgaatataTTTCTTT--TCATT----------ATCT-TAATAATGTTTAAA---T-----------ATGTT-T--A----AAAACAA---TTA----GAG-----------T-----A-TCGAGATTC------TAA--AACTGAAAAAAGACA-ATTAA------AA-C-CCGTTATCAAA---T----GAACTAGATAC-AGACTGTTGAAATGAGCTGGG-CAA------T--GCGATCA-A------ATT--------TACACAATAATTTTC--GC-TGAAAA---A--A-AAACTTATCAG-----TACCA-TT---TAACTTTTTT-----C----ATTTATTA---TTGGAT-----T-TT------TT---TT--TATTTATATGTAAaattcaattcttcttggaacagagttttgaaaaat
gi|23 : CTTTATTTATAT-----AGCAATTT-TTAAAATGTT--TG---T-----------ATGTT-T--T----GAAT-GT---TTA----GAA-----------TATCTTG-T-----TTC------TAA--GTCTGAAAA--TATA-ATTAA------AA-T-CCGTTGTCAAT---T----AAATGAGATATGAGG---------TGAGCCGGT-CAT------TTCGTAACCA-A------GTattccatacgggtgtaga
gi|5 : TATTA-----ACTGGTTT-T--TAATATT--GAGTAT-----------ATGTT-T--A----GAAA-GC---TGA----AGA-----------TATCTTG-T-----TTT------CGA--AACTGAAAA--GATA------------------CATTATCAAA---T----GAATGAGATAC-AGACATTTAAAGTGAGCTGGTACAT------T--TCGCTCA-A------Acatttcgtaaccgttttt
gi|24 : tttaaaagaaatataaatttgatatgcgagcataatgcactatatgcatacaatggccagtctacgtaatttgcctggcgctgaataccagtccaagttgtgctgggcgggtttattctgaaaaatagtgatgtaaaggcgtaactgatattttagaaacggtagatggcgatgca-----ACCAATTT-TAATAATGTG--TA---T-----------ACATT-T--A----GAAA-GC---TTC----AG--------------------------TTC------T------CTTATTA--GATACACTAAATATATGA-T-ATAC-ATCAAA---T----ATATGATATAC-A--CAGCTGAAATGAGCTAAT-CAT------T--GTGTTTT-A------ATT--------T--ACAAT-TTTTTT--Aaaaaactgttattgaaaatcgaacaattatagaagctacattctttcggattacgtccttaaataaattattttgcattaaattttgttgttggaaaaacccggcggtacgccttaacacttgtatacattaatttatataaatataatgctgacgttctgtagctgtatgtgttataaacacaatcaaattcgaataatttgagaacaattctaaattatggagatttaagaaaaaaaaacaaaaactaccgaaatctgattcttgggaatttttaatcttggagcagaattttaaaaactcgatgctgcttagagtagagttttaaagaatatctgacctacttct
gi|11 : a-----G-T-----TCC------CAA--AACTGAAA---GATA-ATTAA------AA-T-CTATTGTCAAA---T----GAACGAGA-------CAGTT----------GGT-CAT------TTGGCA-TCA-A------ATT--------TACACAATATCTTT---------------------AACCTGGTGG-----TACCATTT---T-AC-TTTTT-----C----ATTTATTA----------------TTAA-ATATTC-TTT-ATA-TTCTATGTAAGAAACATTAT---GTTC--TAGGAAA----GCTTAAT--------------TTATTGAAAA-TTTATC--------ATAGA------------TTTC-----AAAATATGTATGT-AC-TGAAAATATAT--TAT-----TTTGC-------TGT-----------------------------G---GTA----CATCC---A------------AA-TC-T--TATAGACTATTTGTTTGATTTTA--AT-TT--ATAAGATA---A--AGTTCTGTA----GGTT-CATGT----G-ATATATACTA--AAT--CAA-----AATCAG-A--TAATATGAGTAC------AAATTATAAAG----AT---gg
gi|10 : catgatcaattatttctttttaaaatcattaagcttggagtatcta--GATA-ATTAAA-----GA-T-C-ATTATGAAA---T----GAGTGAGATGC-TGACAGTTGAAGTGAGCAGGT-CAT------T--GCAGTTA-A------ATT--------TTTACAATATTTTTTTCATTTG---G---A--A-AAACTTGGCAG-----TATCC-TT---TAAC-TTTTT-----A----GTTTATTA---TTTGAT-----T-TTAGTA-ATC--TTT-ATATTTCTATGTAAGAAACATTATGTAGTTC--TAGAAAA----G------------------------TGAAA----GCTTAAG-AATTATGGAAGATGC-AGC-TTTTCA----AAAATTTG-T----CT-TGAAAA-------CATG----TTTGCAA-TAAATTTTG-TTG-TTGG-AAAAAA---C--A-GGCC---GTA----C-AACTTAA------------AAGTC-TTCT-TAAA---TTTATTA-ATATAA--A--TG--A-A--ATG---CTTAGTTCTGTA----GTTT-TATGT----G-ATATAAACAA--AAT--TAA-----AATCAG-A--TAATTTGAAGAC------AAATAATATAG----A----CTG-ggaccactgaaattggacttttaacatgaattttacaaggtcaatgctgcttcgagtagagt
gi|33 : TAA------AA-T-TCATTATCAAA---T----GAATGAAATAC-AGACAGTTGAACTGAGCTAGT--AT------T--actacttaaatctgactcttttcaaaattttattcttttatgtaaaattttaaaaacgtgatactgctagaagtaaaaattttaagatttctaacctacttctccgccaagccatctgca
gi|16 : aAGCTGAGCCGGT-CAT------T--GCGATTA-C------ATT--------TACACAACGTTTTTC--GGTCG---A---A--A-AAA-TTGATGG-----TACCCATT---T----TTTTT-----T----ATTTATTA---TTCTAC-----C-TTAA-ATATTC-TTT-ATATATCTACGTAAGG-------------TC--AAGTAAA----GC------TA------AA--GTGATTGACA---CG-CTA-----TATT--------------CTTTC-----GAAGTACG-T----AC-TGAAAGTAGAT--TA------TTTG-AT-TA-----TT-TGG-TTGG-AAAAAA---CCTA-G-CA---GTA----A-CACTTAA------------AA-CC-T--T-TATACG-TTTATTT-ATATGttcgctcgaaaaggttaacgatgtcc
gi|15 : ATTA-A------ATT--------T-CACTATGTTTTTC--GCT-A---G---A--A-TAACCTGGCATATAATTAACGTTT---TCAT-TTT-------------TTTATTAGAATTTAGT-----T-TTT-----TTG--TT-ATGTTTGTATGTAAGTAACATAGCGTAGTTT--TAGGAAA----GC------TA------AA--GGTGTTTAAAT-TCGATCATGCAATTACGGAAGATAC-A-A-TCTTCAGTCAAAAATATG-T----ACGTGAAAATATAC--TAT-----TTCGCAT-CAAAT-TTT---G-TTGGAGGAAAA---A--A-ACTG---GCA---------TT---------------A-CCAT--T-TATAA--TCTAAAT-ATATGG--T--CA--ATA--A----------TTCTGTGAACAGTTTATAT-TGTtctataatgctgatgttg
gi|14 : g-----C----ATTTATTA---TTCAAT-----T-TTAG-ATATTC-TTT-ATGTGTCTATGTTCGAAACATATTGTAATTC--TAGGAAA----G------GTA------AA--TATATTGTAAA-TCGAACAAG-AATTATAAATGACA-------TTTC-----GAAACGTG-C----AC-TG-GAATAAAT--GAT-----TTGGCAT-T-TCTGTTTACGG-TTGC-AAAAAATCTC--G-GCT----GTA----C-----------------------------T-TATACT-TTGATTT-ATATAA--A--T---ATA--TTGCCTA--CGTTCTGAA----GTTT-CATGT----G-ATATAAACAA--AAT--CAA-----ATTCGG-A--CAATTTGAACAC------AAATAATAAAG----AT-------TGAC---TATG-AAA---------TCA------TGGATTAGAATTTA-------AA--CT-C--A-----AT-G-C-TGC---TTGGAGTA---GAG-TTTTGattcataattatctaaaaatgtaaataa
gi|9 : ttt-----C----ATTTATTA---TTCAAT-----T-TTGA-ACATTC-TTT-ATATGTCTA-GTTC-AAACATAATGTAGTTC--TAGGAAA----GCT------A------AA--GTTATTGAAAA-TAGATCAAG-ACTGACAGAAGGTAC-A-C-CT
gi|5 : gtttattcagaaaatatgtaggggtttatattaacatctttgtcaattttgttaaccgattttaataatgttcatatgtttagaaagctgaatatatcttgttttcgaaactgaaaagataattaaaagtccattatcaaataaataagatacacaC--TGGTACATTTCGCTCAAAAAA------AACTGTTATTGAAAA-TCGAACAA----TTATAGAAGCTAC-A-TTCTTTC-----GGATTACG-T----CC-TTAAA-TAAAT--TAT-----TTTGCAT-TAAATTTTG-TTG-TTGG-AAAAAC---C--C-GGCG---GTA----C-GCCTTAA------------CA-CT-T--G-TATACA-TTAATTT-ATATAAATA--TA--ATG--CTG---A--CGTTCTGTA----GCTG-TATGTGT-----TATAAACAC--AAT--CAA-----ATTCGA-A--TAATTTGAGAACAATTCTAAATTATGGAG----AT---TTA-AGAA----A---AAA---------AAA------CAA----------A-------AA--CTACCGA-----AA-T-C-TGATTCTTGG-------GAA-TTTTTAAgaagtctttatattttaatttatatgaatataatgctgaagttttgtagttttatgtgatataacaaaatcaaattcagatgattggaagacaaataataaagttggactactgaaatttgaatctagggaattttcaattgttgagtagaattttgaaaactcgatgcaacttggagaagatttttgaaaaatgtcttaatctacttttccgtcaccatcccaagacttttagcgctcacagtgctttgattaaatattggacaaattagtaaaaatgc
gi|35 : tttaaaagaaatataaatttgatatgcgagcataatgcactatatgcatacaatggccagtctacgtaatttgcctggcgctgaataccagtccaagttgtgctgggcgggtttattctgaaaaatagtgatgtaaaggcgtaactgatattttagaaacggtagatggcgatgcatattaactggtttttaatattgagtatatgtttagaaagctgaagatatcttgttttcgaaactgaaaagatacattatcaaatgaatgagatacagacatttaaagtgagAT--AAT-----TTTGCAT-TAAATTTTG-CAG-TTCG-CAAAAA---C--tcttggagcagaattttaaaaactcgatgctgcttagagtagagttttaaagaatatctgacctacttct
gi|9 : A---C--A-GAAG---GTA----C-ACCT-GA------------AG-TC-T--T-TATATT-TTAATTT-ATATGA--A--TA---TA--ATGCTGA--AGTTTTGTA----GTTT-TATGTG-----ATATAA-CAA--AAT--CAA-----ATTCAG-A--TGATTGGAAGAC------AAATAATAAAG---------TTG--GAC---TACTGAAA---------TT-------TGA----------ATCTAGGGAATTTT-C--A-----AT-TGT-TGA-----GT---A---GAA-TTTTGAActggcgatatctttaacg
gi|21 : gtttattcagaaaatatgtaggggtttatattaacatctttgtcaattttgttaaccgattttaataatgttcatatgtttagaaagctgaatatatcttgttttcgaaactgaaaagataattaaaagtccattatcaaataaataagatacacacatttattattcaattttgaacattctttatatgtctagttcaaacataatgtagttctaggaaagctaaagttattgaaaatagatcaagactgCT-TTTATTG-ATATGA--A--TAGAATG--TTG---A--AGTTCTGAA----GTTT-TATGTG-----ATATAAACAA--AAT--CAACTACGACTTTG-T--TAAT---AAAAC------aactcgatgcaacttggagaagatttttgaaaaatgtcttaatctacttttccgtcaccatcccaagacttttagcgctcacagtgctttgattaaatattggacaaattagtaaaaatgc
gi|22 : atg--ATA--CTG---A--AGTTTTGTA----GTTT-TATGCG-----ATATAAACAA--AAT--AAA-----AATCGG-A--TAATCTGAAAAC------CAATATTAAAG----AT---tttattcaatttagcagtattagaatattttgaactgccaaagttatagagagaatcttttgatggtcagtatatatt
gi|18 : tcaatatgtgcttcagtttattggTAAACAC--AAT--CCA-----AATCAG-A--TGATTTTAAGAC------AAATAATAAAGAATAAC---TTC-TCAG---TG---AAA---------TCGGATTCTTGG----------C-------AATTTT-T--A-----ATCT-C-TAA-----GT---A---GAA-TTTTGAggactatcgatatctgacccttgaaatgttctaatcttaaagtagaattttcaaaactc
gi|2 : ataaatgtgatgttaagtgcaaaatatggcggtatttttttttatttTTTAAAAACT-----CAATGCT---G----AT----TG--GAG---TA---GAA---------TTT------TGA----------A-------AA--CT-C--A-----AT-T-C-TAA---TTAGAGTA---GGA-TTTCGAAgaactcaatgctgctttgagttgagtttggaaaaatatttaacctacttctcctccaagccatctgca
gi|2 : acaattgtgtcgaataagggacaggtgtaaaaaatggacggtactgttaacattagtgttaattaatctgtaactggctacgcaaattaaactctttattgattaaccatttttaatcatggaatcttagaatatctagtttatataacagaacagatggttaatatccatgatcaaatgcatgagacacaaacaattgaaaggagatggtcataacgattacattaaattgactcgtttacacgatacttttcgctcgaaaaatactggcagtaccctttgacttttttttttatttgttattcgatacgatttcgatattcttgacatttttttaaataataagaacgttaatgttagaaaaatcgatcaagaattacaaaagatacaacctttacatatatgtacggtactgaaaatatatttgttcgcattaatcttgcgtttgaaaaaacatggcggtaccgcttaaaatgtttgattttattgatatgaatataatgctgaagttctttagttttatatgatatcaacaaaataaaaatctgatcatttgaagacaaaaaataaagatggactactgacatctaactcttggggagttttaatcttggagtagaac----AT---CTT-GGAG---TA---GAA---------CTT------TAA----------A-------AA--CT-C--A-----AT-G-C-TGA---TTGGAGTA---GAA-TTTTGAAaa
gi|3 : acaattgtgtcgaataagggacaggtgtaaaaaatggacggtactgttaacattagtgttaattaatctgtaactggctacgcaaattaaactctttattgattaaccatttttaatcatggaatcttagaatatctagtttatataacagaacagatggttaatatccatgatcaaatgcatgagacacaaacaattgaaaggagatggtcataacgattacattaaattgactcgtttacacgatacttttcgctcgaaaaatactggcagtaccctttgacttttttttttatttgttattcgatacgatttcgatattcttgacatttttttaaataataagaacgttaatgttagaaaaatcgatcaagaattacaaaagatacaacctttacatatatgtacggtactgaaaatatatttgttcgcattaatcttgcgtttgaaaaaacatggcggtaccgcttaaaatgtttgattttattgatatgaatataatgctgaagttctttagttttatatgatatcaacaaaataaaaatctgatcatttgaagacaaaaaataaagatggactactgacatctaactcttggggagtttta----AT---CTT-TGAG---TA---CAA---------TTG------TGA----------A-------AA--CT-C--AGTAGTAC-T-T-CGA-----GT---A---GAA-TTTCGAAaactcaattctaattagagtaggatttcgaaaa
gi|18 : ttactatgtattaattatgtgtacagttatatcgaatattggacattagtaaagcatgacactgctgattaagttttttagaaagggtagttgctaacgtgcatatcaatttctttatttattaaccgacttaaatagtattcatatgtgtcgagagcgtaggatatttaggttccaaaactgaaaagataattgaactaagccggttattatgactaaatttactcaatagtttttatttagcctattaaaaccagacggtatttgtttttatataatattcgaatttaatatttctggtatttctgtgtcagaacataatgtagctcacgaaagctatagaatcaataattacagaaaatacatcctttcaaagtaggcactgaaaatatattaccggtatttaatataaacttttgcggttggaaaaacgtagcaatttcccagtaaatattttcaatattgtgtttatgaacatacttctgaagttctttcattttatgtgatataaacaatatcagactaagttgatttcaagaaaaatattaaaaatgaactcctgaaatctggcgtttggtgagtttaa----AT---CTC-TAAG---TA---GAA---------TTT------TGA----------G-------AA--CT-C--A-----AT-G-C-TGC---TTTG---AGTTGAG-TTTGGAAaaaatataatcccatatctccaagaagccgcctgcagagcagcgctttgatt
gi|28 : ataaatgtgatgttaagtgcaaaatatggcggtatttttttttattttaaacacaatccaaatcagatgattttaagacaaataataaagaataacttctcagtgaaatcggattcttggcaattttta----------A-------AA--CT-C--A-----AT-G-C-TGC---TTGGAGCA---GAG-TTTTGAAaaatatttaacctacttctcctccaagccatctgca
10 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|25 ): TGATGTTGCGTAACTAAACTTCATTTGACTGGTTCATTTTACTTCCTGTTCGAAAAAGTACGAATACTGTCAACTGTATGCAGGCTATTGTGTTAGTGATGCAAAGTAAGGAAAATGGGTAAAACATATA
Unaligned ( gi|27 ): TAAATTTGCACATAATTAAGGCAAATGATATAGATGGACTACTGAAATCTGTCTCTTTGGAATTATTTAATCTTGGAGAATTTTGAGAACTCAATGCTGCATGGAGAAGAGTTTTGT
Unaligned ( gi|29 ): TCCGGTCATTTTGTAACCAAGTCATTTCGTAACTGCGTTTTTGGTCATTTCGTAACAGGTTTGAACTGTTGGATAATGTCGTAACCACTTTTTAGGTC
Unaligned ( gi|30 ): TCCGGTCATTTCGTAACCAAGTCATTTCGTAACTGTTTTTTTTTTGGTCGTTTCGTAACCATTTTTTCAGTCATTTCGTAACCACTT
Unaligned ( gi|31 ): TCTGGTCATTTCGTAACCAAGTCATTTTGTAACTGTTTTTTTTGGTCGTTTGTAACTATTTTTTCGGTCATTTCGTAACCAC
Unaligned ( gi|32 ): CTGTCATTTCGTAACCAAGTCATTTCGTAACCAAGTCTTTTCGTAACCCGTTTAAAATGTTGGTCAATCCGTAACCATATTT
Unaligned ( gi|34 ): TAACCAAGTCATTTCGTAACCGGGTTTTTTTTTCGGTCGTTTCGTAACCATTTTTTCGTTTTTTTACGAAATGACCG
Unaligned ( gi|36 ): TATGAGCACATGGATTTGATTCAATGCTGCTTGGAGTAGAGTTTTGA
Unaligned ( gi|37 ): GCACAAACACCACTGGACTGGTTCACTCCACTTCCTGT
Unaligned ( gi|38 ): TGAAGACAAATAATAAAGATGGACTACTGAA
Alignments
lowQualScore : 1111 1111 111111111111 11111 6666666666666666666666666666666666666666666666666666666 111111 11111111 222222222 111111111111 11 222222222 111 111111 22 111111111 11 11 22222 111111 3333333333333333333333333333333333333333 11 44444444444444
lowQualScore : 1 4 8888 55 666 3 4444 3 3 3 666 888888888888 3 44 2 77777 3 444 5 33 66666 1 66666 2 0 2 999999999 66 2 9999999999 33 33 2 3333333333333333333333333333333333333333333333333333333 33 444 33 2 666666 2 2 333 2 4444 3 2 33 222222 2 22222222 3 444 33 0 444444444 33 2 0 0 2 1 66 666666666666 5555 2 3 66666 55 0 33 1 2 2 333333333 00 44 2 1 666 2 66666 88888888 0 2 2 000000 1 555 444 888 5555 777 00 33 2 111111111 2 999999 444 2 6666 33 11 33 33 88 2 0 44444 3 33 33 1 1 666666 555 6666 5555 8888888 444 7777777777777777777777777777777777777777 6 8888888 11 2 33 66 2 00000000000000 33
lowQualScore : . . .... .. ... . .... . . . ... ............ . .. . ..... . ... . .. ..... . ..... . . . ......... .. . .......... .. .. . ....................................................... .. ... .. . ...... . . ... . .... . . .. ...... . ........ . ... .. . ......... .. . . . . . .. ............ .... . . ..... .. . .. . . . ......... .. .. . . ... . ..... ........ . . . ...... . ... ... ... .... ... .. .. . ......... . ...... ... . .... .. .. .. .. .. . . ..... . .. .. . . ...... ... .... .... ....... ... ........................................ . ....... .. . .. .. . .............. ..
lowQualScore : 0 2 8888 55 444 6 1111 6 6 6 444 333333333333 1 22 9 55555 6 777 1 77 00000 1 22222 5 7 4 444444444 55 4 6666666666 11 11 2 0000000000000000000000000000000000000000000000000000000 22 111 11 2 111111 1 1 777 1 5555 9 2 11 666666 4 55555555 4 444 44 9 999999999 77 7 9 3 7 1 33 777777777777 3333 5 4 22222 55 8 44 2 1 5 888888888 66 22 5 1 333 7 77777 77777777 2 7 7 666666 8 666 444 666 3333 888 88 33 5 555555555 9 666666 222 9 1111 99 88 99 99 66 9 9 88888 4 99 99 0 1 555555 444 5555 0000 5555555 555 3333333333333333333333333333333333333333 6 7777777 00 7 77 33 7 00000000000000 77
consensus : AAGTGATGCCGAATAAGGGACC-GAT--GT---AA-A-CA-TGG-C-GGT-ACTGT---TAANTTTA-----GTT-TT--T-T-CA--GAAANGGTAGCTG---GCGGTGC--ATATTAA----CTTCTTTAT-----TTAT-TAACCGATTT-TAATAATGTT---------TA--TATGTT-T-----A----GAAAG--C--TT-A----AG-A-----------T-----G-T-----T--TC------CG---------A--A---ACTGAAAA--GATA-ATTAAA------A-T-CCATTATCA---A-AT----GAATGAGATACAGACAGTTGAANTGAGCTGGT-CATT--GCGATTA------A-ATT--------TACACAAT---ATTTTT--CGCTCG---G---A--A-AAACCTGGCG-GTACCCTTT---TAA----C-TTTTTC----ATTTATT-ATTCGAT-----TTTAAN-ATTCTT--TATATTTCTATGTAAGAAACATAATGTAGTTCTA-GGAAAGCT-----TAAAGTTATTGAAAA-TCGATCAAG-AATTACAGAAGATACA-C-CTTT-C-----AAA---A----TACG-TAC-TGAAAATATAT------TATTTC-GCATTAAAT---TTTGCGGTTGG----AAAAAA---CC-GGCGGTAC-CCC-TTAAA---A-TC--TT-T-A----TACT-TTTATTT-AT----ATG--A--A--T--A--A-TGCTGAAGTTCTGTAGTTTTATGTG---GATATAAACAA--AAT--CAAAATCGGATAATTTGAAGAC------AAA---TAATAAA----G----A---T---CT-NTGA--------------G---------TA---GAA--------TTTTGAA-------AA--CT-C--AAT-GC-TG-N---TT-G-GA--A--GAATTTTGAA
Reference ( family-870 ) : AAGTGATGCNGAATAGGGGACC-GAT--GT---AA-A-CA-TGG-C-GGT-ACTGT---TAANTTTA-----GTT-TT--T-T-CN--GAAANGGTAGCTG---GCGGCGC--ATATTAA----CTTCTTTAT-----TTAT-TAACCGATTT-TAATAATGTT---------TA--TATGTT-T-----A----GAAAG--C--TT-A----AG-A-----------T-----G-T-----T--TC------CG---------A--A---ACTGAAAA--GATA-ATTAAA------A-T-CCATTATCA---A-AT----GAATGAGATACAGACAGTTGAACTGAGCTGGT-CATT--GCGATTA------A-ATT--------TACACAAT---ATTTTT--CGCTCG---G---A--A-AAACCTGGCG-GTACCCTTT---TAA----C-TTTTTC----ATTTATT-ATTCGAT-----TTTAAA-ATTCTT--TATATTTCTATGTAAGAAACATAATGTAGTTCTA-GGAAAGCT-----TAAAGTTATTGAAAA-TCGATCAAG-AATTACAGAAGATACA-C-CTTT-C-----AAA---A----TACG-TAC-TGAAAATATAT------TATTTC-GCATTAAAT---TTTNCNGTTGG----AAAAAA---CA-GGCGGTAC-CCC-TTAAA---A-TC--TT-T-A----TACT-TTTATTT-AT----ATG--A--A--T--A--A-TGCTGAAGTTCTGTAGTTTTATGTG---GATATAAACAA--AAT--CAAANTCGGATAATTTGAAGAC------AAA---TAATAAA----G----A---T---CT-NTGA--------------G---------TA---AAA--------TTNTGAA-------AA--CT-C--AAT-NC-TG-A---TT-G-GG--A--GAATTTTGAA
gi|1 : TGCTGAATAGGGGATC-GTT--GT---AA-AACA-TGG-C-ACT-ACTGT---TAACTTTT-----TTT-TT--T-TTCT--GAAAGAGTAGCTG---CTGGTGC--ATATTAA----CTATTTTAT-----TTAT-CAACTGATTT-TAATATTGTT---------TA--TAGGTT-T-----A----GAAAG--C--TT-AGAACAT-A-----------T-----ACT-----T--TT------CA---------A--C---ACTGAAAA--AATA-ATTAAA------A-T-CCATTTTTA---A-AT----GGATAAGATAAAGACAGTTAAACAGAGCTGGT-TATT--GTGATTA------A-ATT--------TACACAA----ATTTTT--A--TCA-------A--A-AAACCTGGCG-CTACCTTTTAAATAC----C-GTTTTC----ATTTATT-ATTTAAT-----TTTAAT-ATTGTC--TATATTTCTATGTAAGAAACATAATGTTATTCTG-GGAAAGCT-----TAA-GTTACTGAAAA-GTGATCAAG-AATTACAGAAGATACA-C-CTTT-T-----AAA---A----TATG-TAC-TGAAAATAAAT------TATTTC-CAATTAAAT---TTTGCAGATGG----AAAAAA---CT-GGGGGTAC-CCT-TTAA----------TT-T------TCCA-TTTATT
gi|1 : taagtttaacataaattaggaaattacttggtaatgcgcagctaaaatgcgtcatataatggtcagtgcatattcactgtgtaaaagtgatgtatatatacaattgT---AA-A-CA-GAG-CTGGTTATTGTGATTAAATTTACACAAATT-TT--TAT-CA--AAAA----ACCTG---GCGCTAC--CTTTTAAATACCGTTTTCAT-----TTAT-TATTTAATTT-TAATATTGTC---------TA--TATTTC-TATGTAA----GAAA---C--AT-A----A--------------T-----G-T-----TATTC------TGGGAAAGCTTA--AGTTACTGAAAA--G-TG-ATCAAG------A-----ATTA-CA---G-A----------AGATACAC-CTTTTAAAATA---TG---TACT--GAAAATA------A-ATTAT------TTC-CAATTAAATTTTG--CAGATG---G---A--A-AAAACTGGGG-GTACCCTTT----AA------TTTTCC----ATTTATT-GTTCGGT-----TTTAAT-ATTATT--TACATTTCTATGTAAGAAACATAATAGAGTTTTA-AGAAAGC------TAAAGTTATTGAAGA-GTGATCAAG-AACAACAGAAGATACAGC-CTTT-C-----ATA---A----TATG-TGC-TGAAAATATAT------TATTTCAAAATTAAAT---TTTGAAA-TGG----AAAAAgttcggttttaatattatttacatttctatgtaagaaacataatagagttttaagaaagctaaagttattgaagagtgatcaagaacaacagaagatacagcctttcataatatgtgctgaaaatatattatttcaaaattaaattttgaaatggaaaaattttgtttttcagattttaacttacactt
gi|10 : taagtttaacataaattaggaaattacttggtaatgcgcagctaaaatgcgtcatataatggtcagtgcatattcactgtgtaaaagtgatgtatatatacaattgtgctgaataggggatcgttgtaaaacatggcactactgttaacttttttttttttctgaaagagtagctgctggtgcatattaactattttatttatcaactgattttaatattgtttataggtttagaaagcttagaacatatacttttcaacactgaaaaaataattaaaatccatttttaaatggataagataaagacagt--GATA-ATTAAA------G-A-TCATTATGA---A-AT----GAGTGAGATGCTGACAGTTGAAGTGAGCAGGT-CATT--GCAGTTA------A-ATT--------TTTACAAT---ATTTTTTTCATTTG---G---A--A-AAACTTGGCA-GTATCCTTT----AA----C-TTTTTA----GTTTATT-ATTTGAT-----TTTAGT-AATCTT--TATATTTCTATGTAAGAAACATTATGTAGTTCTA-GAAAAG----------------TGAAA----GCTTAAG-AATTATGGAAGATGCAGC-TTTT-C-----AAA---AA---TTTG-TCT-TGAAAACATGT------T----T-GCAATAAAT---TTTGTTGTTGG----AAAAAA---CA-GGCCGTAC-AAC-TTAAA---AGTC--TT-C-T----TAAA-TTTATTA-AT----ATA--A--A--TGAA--A-TGCTTA-GTTCTGTAGTTTTATGTG----ATATAAACAA--AAT--TAAAATCAGATAATTTGAAGAC------AAA---TAATATA----G----A----------CTGA--------------C---------TACTTAAATCTGACTCTTTTCAA-------AA--TT-T--TAT-TC-TT-----TT-ATGT--A--AAATTTTAAAttttgtttttcagattttaacttacactt
gi|11 : AAG--C--TT-GG---AGTA-----------TCTA--G-T-----T--CC------CA---------A--A---ACTGAAA---GATA-ATTAAA------A-T-CTATTGTCA---A-AT----GAACG------AGACAGT----------TGGT-CATTTGGC-ATCA------A-ATT--------TACACAAT---ATCTTT---------------------AACCTGGTG-GTACCATTT---T-A----C-TTTTTC----ATTTATT-A------------TTAAATATTCTT--TATA-TTCTATGTAAGAAACATTAT---GTTCTA-GGAAAGCT-----T-AATTTATTGAAAA-TTTATC--------ATAGA-----------TTT-C-----AAA---ATATGTATG-TAC-TGAAAATATAT------T-------------AT---TTTGCTGT----------------------GGTACATCC----AA---A-TC--TTAT-A----GACTATTTGTTTGATTTTAATT--T--A--T--A--A--GATAAAGTTCTGTAGGTTCATGT----GATATATACTA--AAT--CAAAATCAGATAATATGAGTAC------AAA---TTATAAA----G----A---T---aacgtgatactgctagaagtaaaaattttaagatttctaacctacttctccgccaagccatctgca
gi|12 : catgatcaattatttctttttaaaatcattGGACCAGTT--TT---AA-A-CC-TGG-T-GGT-AGTGT---TAAGATTA-----GGT-AT--A-T-AA--GAAAGAGTAGTTG---GTGGTTCTTATACTTA----CTTATTTAT-----TCAT-TAACCGATTTATAA-AATGTT---------TA--TAATTT-T-----A----AAAAG--C--TT-C----ATTA-----------TCTT--G-T-----T--TC------TG---------A--A---ACTGAAAA--TACA-TTTAGA------A-T-CCATTATCA---A-AT----GAAAGAGATACAGACAGTTGAAATGAGTTGGT-GATA--GCGATTA------A-ATT--------TACAAAAT---ATTTTT--CGCT-G---G---A--A-AAACTTGTCA-GTAGC-TTT---TAA----C-TTTTTC----ACTTATT-ATT------------GAA-ATTCAA--TGTATT-CTGTAT--------T--TATA-TTTT---------T-----TGAA-TAATTGAAA--TCGATCAAG-AATTTAAGAAG--------------------AA---A----TACA-TAC-TGAAAATATAT------TATTTT-GCATTAAAT---TTTGCTGATGA----AAAGAC---CT-GGCGATAC-TCC-TTAAA---ggaccactgaaattggacttttaacatgaattttacaaggtcaatgctgcttcgagtagagt
gi|13 : gaaaAAGTGATGCAGCATAGGGCAAC--AT--GT---AA-AACA-TGG-C-GAT-ACTGT---TATATATA------TA-TT--T-T-TA--GAAATGGTTACTG---GCAGTGC--ATATTGA----CTTCTTTAA-----TTGT-TAACCGATTT-TAATAATGTTAACTGATTTTAATCATGTT-TTA---A----GAAAG--C--TT-A----GG-A-----------TATTTTG-T-----T--TT------AG---------A--A---ACTGAAAA--GATA-ATTAAA--------T-CCATTATCA---A-AT----GAATTAGATATAGACATTTAAACTGAGCTGGT-CATT--GCAATTA------A-A---------------------GTTTTT--CCCT-----G---A--A-AAAAATGATG-GTACCCTTT---TA-------TTTTT
gi|14 : gttgcaaccaacctccactggtctggttcactccacttcctgttctgaacaatacttagacttactgtatgcaggttattgtctaacaagttcTTTC----ATTTATT-ATTCAAT-----TTTAGATATTCTT--TATGTGTCTATGTTCGAAACATATTGTAATTCTA-GGAAAG-G-----TAAATATATTGTAAA-TCGAACAAG-AATTATAAATGACA------TTT-C-----GAA---A----CGTG-CAC-TG-GAATAAAT------GATTTG-GCATT---TCTGTTTACGGTTGC----AAAAAATCTC--GGCTGTAC--------------------T-T-A----TACT-TTGATTT-AT----ATA--A--A--T--AT-ATTGCCTACGTTCTGAAGTTTCATGT----GATATAAACAA--AAT--CAAATTCGGACAATTTGAACAC------AAA---TAATAAA----G----A---TTGACT-ATGA--------------AATCATGGATTA---GAA--------TTT---A-------AA--CT-C--AAT-GC-TG-C---TT-G-GAGTA--GAGTTTTGt
gi|15 : GATTA------A-ATT--------T-CACTAT---GTTTTT--CGCT-A---G---A--A-TAACCTGGCATATAA----T---TAA----C-GTTTTC----ATTTTTTTATTAGAA-----TTTAGT-TTTTTTGTTATGTTTGTATGTAAGTAACATAGCGTAGTTTTA-GGAAAGC------TAAAGGTGTTTAAAT-TCGATCATGCAATTACGGAAGATACA-A-TCTT-CAGTCAAAA---A----TATG-TACGTGAAAATATAC------TATTTC-GCATCAAAT---TTT---GTTGGAGGAAAAAAA---CT-GGCATTAC-CAT-TTATA---A-TC--T
gi|16 : AGCTGAGCCGGT-CATT--GCGATTA------C-ATT--------TACACAAC---GTTTTT--CGGTCG---A---A--A-AAA-TTGATG-GTACCCATT---T--------TTTTTT----ATTTATT-ATTCTAC-----CTTAAATATTCTT--TATATATCTACGTAAGG-------------TCAA-GTAAAGC------TAAAGTGATTGACAC-GCTAT------ATT---------------CTTT-C-----GAA---G----TACG-TAC-TGAAAGTAGAT------TATTT--G-ATT--AT---TT---GGTTGG----AAAAAA---CCTAGCAGTAA-CAC-TTAAA---A-CC--TT-T-A----TACG-TTTATTT-AT----ATGTCT--A--T--A--A-TGCTGATGTTaaatatatggtcaataattctgtgaacagtttatattgtattcataattatctaaaaatgtaaataa
gi|17 : TTCTTT-------TCAT-TA-----TCT-TAATAATGTT---------TAAATATGTT-T-----A----AAAA---CAATT-A----GA-G-----------T-----A-TCGAGAT--TC------TA---------A--A---ACTGAAAAAAGACA-ATTAAA------A-C-CCGTTATCA---A-AT----GAACTAGATACAGACTGTTGAAATGAGCTGGG-CAAT--GCGATCA------A-ATT--------TACACAAT---AATTTT--CGCT-GAAAA---A--A-AAACTTATCA-GTACCA-TT---TAA----CTTTTTTC----ATTTATT-ATTGGAT-----TTT--------TT--TTTATTTATATGTAAg
gi|18 : tTTTTATTT--------TAAACAC--AAT--CCAAATCAGATGATTTTAAGAC------AAA---TAATAAA----GAATAA---C---TT-CTCA--------------G---------TG---AAATCGGAT--TCTTGGC-------AATTTT-T--AATCTC-TA-A--------GT--A--GAATTTTGAattccatacgggtgtaga
gi|18 : ataaatgtgatgttaagtgcaaaatatggcggtatttttAAATCGGATTCTT----GGC------AAT---TTTTA-----------A---T---CT-CTAA--------------G---------TA---GAA--------TTTTGAG-------AA--CT-C--AAT-GC-TG-C---TT-T-GA--GTTGAGTTTGGAAgaactcaatgctgctttgagttgagtttggaaaaatatttaacctacttctcctccaagccatctgca
gi|19 : ataaatgtgatgttaagtgcaaaatatggcggtatttttttttattttaaacacaatccaaatcagatgattttaagacaaataataaagaataacttctcagtgAATAAGGAA---AAT--ATTTAAA-A-TA-AAG-C-AGC-ACTGT---TACTTTTA-----GTTGTT--T-T-CTTAGAAATGACAGTTG---GCGGTGC--CTATTTA----TTTaaatatttaacctacttctcctccaagccatctgca
gi|2 : tttgacgtcgtgtaatcactggactggttcactcttatttcctgtttggaaaattacgtagactggcttatgtaagcagtttattgtgtaaaacgtaatcgtaattgacagtatTGTCGAATAAGGGACA-GGT--GT---AA-A-AAATGGAC-GGT-ACTGT---TAACATTA-----GTG-TTAAT-T------AATCTGTAACTG---GCTACGC--AAATTAA----ACTCTTTAT-----TGAT-TAACCATTTT-TAATCATG------------G--AAT-CT-T-----A----GAATA--T--CT-A-------------------------G-T-----T--TA------TA---------T--A---ACAGAACA--GATG-GTTAAT------A-T-CCATGATCA---A-AT----GCATGAGACACAAACAATTGAAAGGAGATGGT-CATA--ACGATTACATTA-A-ATTGACTCGTTTACACGAT---ACTTTT--CGCTCG---A---A--A-AATACTGGCA-GTACCCTTT----GA----C-TTTTTTTTTTATTTGTT-ATTCGATACGATTTCGAT-ATTCTT--GACATTTTT-T-TAA-----ATAAT--------A-AGAACG-T-----TAATGTTA--GAAAAATCGATCAAG-AATTACAAAAGATACAAC-CTTTAC-----ATATATG----TACGGTAC-TGAAAATATAT------TTGTTC-GCATTAA-T---CTTGC-GTTTG----AAAAAA---CATGGCGGTAC-CGC-TTAAA---A-TG--TT-T-G-----A-T-TTTATTG-AT----ATG--A--A--T--ATAA-TGCTGAAGTTCTTTAGTTTTATATG----ATATCAACAA--AAT--AAAAATCTGATCATTTGAAGAC------AAA---AAATAAA----G----A---T---t
gi|2 : acaattg----A---T---CT-TGGA--------------G---------TA---GAA--------CTTTAAA-------AA--CT-C--AAT-GC-TG-A---TT-G-GAGTA--GAATTTTGAAggactactgacatctaactcttggggagttttaatcttggagtagaactttaaaaactcaatgctgattggagtagaattttgaaaactcaattctaattagagtaggatttcgaaaa
gi|2 : acaattgtgtcgaataagggacaggtgtaaaaaatggacggtactgttaacattagtgttaattaatctgtaactggctacgcaaattaaactctttattgattaaccatttttaatcatggaatcttagaatatctagtttatataacagaacagatggttaatatccatgatcaaatgcatgagacacaaacaattgaaaggagatggtcataacgattacattaaattgactcgtttacacgatacttttcgctcgaaaaatactggcagtaccctttgacttttttttttatttgttattcgatacgatttcgatattcttgacatttttttaaataataagaacgttaatgttagaaaaatcgatcaagaattacaaaagatacaacctttacatatatgtacggtactgaaaatatatttgttcgcattaatcttgcgtttgaaaaaacatggcggtaccgcttaaaatgtttgattttattgatatgaatataatgctgaagttctttagttttatatgatatcaacaaaataaaaatctgatcatttgaagacaaaaaataaagatggactactgacatctaactcttggggagttttaGA--------------G---------TA---GAA--------TTTTGAA-------AA--CT-C--AAT-TC-TA-A---TT-A-GAGTA--GGATTTCGAAaactcaattctaattagagtaggatttcgaaaa
gi|20 : acaattgtgtcgaataagggacaggtgtaaaaaatggacggtactgttaacattagtgttaattaatctgtaactggctacgcaaattaaactctttattgattaaccatttttaatcatggaatcttagaatatctagtttatataacagaacagatggttaatatccatgatcaaatgcatgagacacaaacaattgaaaggagatggtcataacgattacattaaattgactcgtttacacgatacttttcgctcgaaaaatactggcagtaccctttgacttttttttttatttgttattcgatacgatttcgatattcttgacatttttttaaataataagaacgttaatgttagaaaaatcgatcaagaattacaaaagatacaacctttacatatatgtacggtactgaaaatatatttgttcgcattaatcttgcgtttgaaaaaacatggcggtaccgcttaaaatgtttgattttattgatatgaatataatgctgaagttctttagttttatatgatatcaacaaaataaaaatctgatcatttgaagacaaaaaataaagatggactactgacatctaactcttggggagttttaatcttggagtagaactttaaaaactcaatgctgattgAAGTGATGTAGATTATGGGA---AAT-----------------G-C-GGT-ATTGT---TA------------TT-TT----------GAAATGGTAGCTT---GCGGTGC--ATA-TAA----TTACTTTAT-----TTAT-TAACAGATTT-TAATTATGTT---------TA--AGTGAT-T-----T----GAATG--C--TG-A----Aaa
gi|21 : accccactggacgggtttattcagaaaaatatgaagactggctacgttatgcagtgtaacacgtag-A----TGCT-TTTATTG-AT----ATG--A--A--T--AGAA-TGTTGAAGTTCTGAAGTTTTATGT----GATATAAACAA--AAT--CAAt
gi|22 : -T-G----TGCT-TCAGTTT-AT-----TG--G--A--T--A------CTGAAGTTTTGTAGTTTTATGCG----ATATAAACAA--AAT--AAAAATCGGATAATCTGAAAAC------CAA---TATTAAA----G----A---T---ctacgactttgttaataaaactttattcaatttagcagtattagaatattttgaactgccaaagttatagagagaatcttttgatggtcagtatatatt
gi|23 : tcaataCTTTAT-----TTATATAGCAATTTT-TAA-AATGTT---------TG--TATGTT-T-----T----GAATG--T--TT-A----GA-A-----------TATCTTG-T-----T--TC------TA---------A--G---TCTGAAAA--TATA-ATTAAA------A-T-CCGTTGTCA---A-TT----AAATGAGATA--------TGAGGTGAGCCGGT-CATT--TCGggactatcgatatctgacccttgaaatgttctaatcttaaagtagaattttcaaaactc
gi|24 : AACCAATTT-TAATAATGTG---------TA--TACATT-T-----A----GAAAG--C--TT-C----AG---------------------------T--TC------T------------------CTTATTA--GATACACTAAATATATGA-T-ATAC-ATCA---A-AT----ATATGATATACA--CAGCTGAAATGAGCTAAT-CATT--GTGTTTT------A-ATT--------T--ACAAT---TTTTTT--taaccaagtcatttcgtaaccgttttt
gi|26 : -----GTT-TT--T-C-CA--AAAATGGTAGCTG---GCGAAGC--ATATCAA-----TTCGTTAT-----TGGT-TAACCGGTTT-TGATAATACT---------TA--TATGTT-T-----A----GATAG--C--T--------G-A-------------------------------------G---------A--A---ACTGACAT--GATA-GTTAAA------A-T-CAATT-TAA---ACAT----GAAagg
gi|27 : ----A---T---CT-TGGA--------------G---------------AA--------TTTTGAG-------AA--CT-C--AAT-GC-TGCA---TG-GAGA--A--GAGTTTTGat
gi|28 : taaatttgcacataattaaggcaaatgatatagatggactactgaaatctgtctctttggaattatttaA-------AA--CT-C--AAT-GC-TG-C---TT-G-GAGCA--GAGTTTTGAAt
gi|3 : AGTTATATCGAATATTGGAC---ATTAGT---AA-AGCA-TGA-C-----ACTGC---TGA-TTAA-----GTT-TT--T-T--A--GAAAGGGTAGTTGCTAACG-TGC--ATATCAA----TTTCTTTAT-----TTAT-TAACCGACTT-AAATAGTATT---------CA--TATGTG-T-----C----GAGAG--C--GT-A----GG-A-----------T-----A-T-----T--T--------------------------------A--GGT----------------T-CCA-----A---A-AC-------TGAAA---AGATAATTGAACTAAGCCGGT-TATT--ATGACTA------A-ATT--------TACTCAAT---AGTTTT--TATTTA---GCCTATTA-AAACCAGACG-GTA----TT---TG--------TTTTT----ATATAAT-ATTCGAA-----TTTAAT-ATTTCT--GGTATTTCTGTGTCAG-AACATAATGTAGCTC-A-CGAAAGC------------TATAGA-------ATCAAT-AATTACAGAAAATACATC-CTTT-C-----AAA---G----TAGG-CAC-TGAAAATATATTACCGGTATTTA-ATATAAACT---TTTGCGGTTGG-----AAAAA---CGTAGCAATTT-CCCAGTAAAT--A-TT--TT-CAA----TA-T-TGTGTT---T----ATG--AACA--T--A--C-TTCTGAAGTTCTTTCATTTTATGT----GATATAAACAA--TAT--CAGACTAAGTTGATTTCAAGAA------AAA---TATTAAA----A----A---T---aaatgtctgatctatttctctactgatccatcaccagcccaagactttcagtgcttacagcactctgat
gi|3 : ttactatgtattaattatgtgtac----A---T---CT-TTGA--------------G---------TA---CAA--------TTGTGAA-------AA--CT-C--AGT-AG-TA-C---TTCG-AGT-A--GAATTTCGAAgaactcctgaaatctggcgtttggtgagtttaaatctttgagtacaattgtgaaaactcagtagtacttcgagtagaatttcgaaaaaatataatcccatatctccaagaagccgcctgcagagcagcgctttgatt
gi|33 : ttactatgtattaattatgtgtacagttatatcgaatattggacattagtaaagcatgacactgctgattaagttttttagaaagggtagttgctaacgtgcatatcaatttctttatttattaaccgacttaaatagtattcatatgtgtcgagagcgtaggatatttaggttccaaaactgaaaagataattgaactaagccggttattatgactaaatttactcaatagtttttatttagcctattaaaaccagacggtatttgtttttatataatattcgaatttaatatttctggtatttctgtgtcagaacataatgtagctcacgaaagctatagaatcaataattacagaaaatacatcctttcaaagtaggcactgaaaatatattaccggtatttaatataaacttttgcggttggaaaaacgtagcaatttcccagtaaatattttcaatattgtgtttatgaacatacttctgaagttctttcattttatgtgatataaacaatatcagactaagttgatttcaagaaaaatattaaaaatgaactcctgaaatctggcgtttggtgagtttaaTAAA------A-T-TCATTATCA---A-AT----GAATGAAATACAGACAGTTGAACTGAGCTAGT--ATT--aaaatataatcccatatctccaagaagccgcctgcagagcagcgctttgatt
gi|35 : aAT------AATTTT-GCATTAAAT---TTTGCAGTTCG----CAAAAA---CCTGGCGATA--TCT-TTAAttcgctcgaaaaggttaacgatgtcc
gi|4 : TGTCGACTAAGGAACA-GAT--GT---AAGA-CA-TGG-T-GGT-TTTGG---CAAACGCA-----GTT-TT--T-G--A--GAAAGGGTAGCTG---GTTGGGA--ATCTTAG----CGTCGTTAT-----TTAT-TAA--------------TGTT---------TA--TATGTT-T-----A----GAAAT--A--TT-A----CA-A-----------T-------------T--TC------TA---------GTTA---A-TGAAAA--TATA-ATTAAA------A-C-TCATTATTC---A-AT----GAATTAGATACAGACAGTTAAACTGACCTGGT-CATT--GCGATTATATTTCATATT--------TACACAAT---ATCTAT--CGCTCG-------A--A-AAGCATGCTG-GTACC--TT---TAA----T-TTTTTT----AATTATG-ATTCGAT-----TTTATA--TGTTT--TATATTTCTGCGTATGAATCATAGTGTTGTTCTATGGAAGAC-------AAAGTTATTGAAAA-TCAATCAAG-AATTTCAGGAGTTACAAC-CTTT-C-----ACT---A----TACG-AAC-TGAAAATATATAG----TATTTC-ACATTGAAT---TTTACGGTTGG----AAAAAAAC-CT-GGCAGTGC-CCC-TTAAGTATA-TTATTT-T-AATTTTGAT-TTTATTT-AT----ATA--AGTA--T--A--A-TGCTGAAATTATGTAGTTTTATGTG---T-TATTTACAT--AAT--CAAACTTGGATAATTTAAACACAAAAA-AAAGACTACTGAAATCTG----ACTTT---TT-GTGAAATTTAATCTTGGTG---------TA---GAA--------GTTTTAA-------AA--CT-C--AAT-GC-TG-C---TT-A-GG--A--cg
gi|5 : ttgtaacacatattttcactgtgtaaaagggagtactcagttt-GAT--GT---AA-A-----GG-C-GTA-ACTGA---TA----------------T--T-T-TA--GAAACGGTAGATG---GCGATGC--ATATTAA----CTGGTTT---------------------T-TAATATTGAG---------TA--TATGTT-T-----A----GAAAG--C--TG-A----AG-A-----------TATCTTG-T-----T--TT------CG---------A--A---ACTGAAAA--GATA------------------CATTATCA---A-AT----GAATGAGATACAGACATTTAAAGTGAGCTGGTACATT--TCGCTCA------A-Attg
gi|5 : tttaaaagaaatataaatttgatatgcgagcataatgcactatatgcatacaatggccagtctacgtaatttgcctggcgctgaataccagtccaagttgtgctgggcgggtttattctgaaaaatagtGCTCAA-AAAAAACT---------GTTATTGAAAA-TCGA---AC-AATTATAGAAGCTACA-TTCTTT-C-----GGA---T----TACG-TCC-TTAAA-TAAAT------TATTTT-GCATTAAAT---TTTGTTGTTGG----AAAAAC---CC-GGCGGTAC-GCC-TTAAC---A-CT--TG-T-A----TACA-TTAATTT-AT----ATA--AATA--T--A--A-TGCTGACGTTCTGTAGCTGTATGTG---T-TATAAACAC--AAT--CAAATTCGAATAATTTGAGAACAATTCTAAA---TTATGGA----G----A---T---TT-AAGA--------------A----------A---AAA--------AAACAAA-------AA--CTACCGAAA-TC-TG-ATTCTT-G-G------GAATTTTTAAaaaaactgttattgaaaatcgaacaattatagaagctacattctttcggattacgtccttaaataaattattttgcattaaattttgttgttggaaaaacccggcggtacgccttaacacttgtatacattaatttatataaatataatgctgacgttctgtagctgtatgtgttataaacacaatcaaattcgaataatttgagaacaattctaaattatggagatttaagaaaaaaaaacaaaaactaccgaaatctgattcttgggaatttttaatcttggagcagaattttaaaaactcgatgctgcttagagtagagttttaaagaatatctgacctacttct
gi|5 : tttaaaagaaatataaatttgatatgcgagcataatgcactatatgcatacaatggccagtctacgtaatttgcctggcgctgaataccagtccaagttgtgctgggcgggtttattctgaaaaatagtgatgtaaaggcgtaactgatattttagaaacggtagatggcgatgcatattaactggtttttaatattgagtatatgtttagaaagctgaagatatcttgttttcgaaactgaaaagatacattatcaaatgaatgagatacagacatttaaagtgagctggtacatttc----A---T---CT-TGGA--------------G---------CA---GAA--------TTTTAAA-------AA--CT-C--GAT-GC-TG-C---TT-A-GAGTA--GAGTTTTAAAtcttggagcagaattttaaaaactcgatgctgcttagagtagagttttaaagaatatctgacctacttct
gi|6 : tttaaaagaaatataaatttgatatgcgagcataatgcactatatgcatacaatggccagtctacgtaatttgcctggcgctgaataccagtccaagttgtgctgggcgggtttattctgaaaaatagtgatgtaaaggcgtaactgatattttagaaacggtagatggcgatgcatattaactggtttttaatattgagtatatgtttagaaagctgaagatatcttgttttcgaaactgaaaagatacattatcaaatgaatgagatacagacatttaaagtgagctggtacatttcgctcaaaaaaaactgttattgaaaatcgaacaattatagaagctacattctttcggattacgtccttaaataaattattttgcattaaattttgttgttggaaaaacccggcggtacgccttaacacttgtatacattaatttatataaatataatgctgacgttctgtagctgtatgtgttataaacacaatcaaattcgaataatttgagaacaattctaaattatggagatttaagaaaaaaaaacaaaaactaccgaaatctgattcttgggaatttttaAAGTGATGCAAAGTAAGCGGCT-GGT--GT---AA-A-TA-TGA-C-AAT-ACTGT---TAAATTTA-----GTT-TT--T-T-CT--GAAAGGATAGCTG----CAACTC--ATATTTA----TTTCTTTAT-----TTAT-TTACCAATTT-TAATAACGTT---------AA--TATATT-T-----A----GAAAA--A--TC-A----AG-A-----------T-----G-T-----T--TC------CG---------A--A---ACTGAAAA--GATA-ATTAAG------A-T-CCATTATCA---A-GT----GAATGAGGTACAGGCAGTTAAACTGAGCTGGT-CATT--GCAATTA------A-ATT--------TACACAAT---ATTTTT--TACTTG---G---A--A-AAACCTGACG-GTACCCTTT---TAA----C-TTTACC----ATTTATT-ATTTGAT-----TTTAAA-ATTGCT--TATGTTTCTATGTAAGAAACATAATGGAGTTCTG-GTAAAGCTTAGTATAAAGTTATTGAAAA-TCGACCAAG-AGTAATAGAAGATACA-C-CTTT-C-----AAA---A----TATG-AAC-TGAAAATGTAT------CATTTT-GCATTAAAT---GTTTCCGTTGG----GAAAAA---CA-GTTGGTAC-CCC-TTAAA---A-CC--TT-T-A----CACT-TTTATTT-AT----ATG--A--A--T--A--A-TAATAAAGTTCTGTGGTTTTATGTGTCAGATATAAACAA--AAT--CAAAATCTGATAATTTGAAAAC------AAA---TAATAAA----G----A---T---CT-GTGA--------------G---------TA---AAA--------TTATGAA-------AA--CT-C--AAT-TC-TG-A---TT---GG--A--GAATTTTGAAgaatatctgacctacttct
gi|7 : AAAAGGTAGCTG---GCAGTGC--ATATATT----CTTCTTTAT-----ACAT-TAACCGATTT-TAATAATTTT---------TA--TATGTTGT-----ATGTTGAAAGAAC--TTAA----AG-ATTAAAATATTTT-----G-T-----T--TT------CA---------A--A---ACGGAAAA--GAAA-ATTAAG------A-TAATATTATTAAGGA-ATTTAGGAATGAGATACATACAGTTAA-------------GTT--GCGATTA------A-AAT--------TATACACT---ACGTTT--TGCTT--------A--ATAAACCTTGCG-GTA-CTTTT---TAACTTTC-TTTCTC----ATTTATA-ATTGGAT-----ATTAAT-ATAATT--TATATTTCTATGTAAGGTATATAACGTAGTTCCA-GGAAAGC------TAAAATTATTAGAAA-TCGTTCAAC-AATTACGGAA-ATAAA-C-TTTT-C-----AAA---A----TACT-CCC-TTAAAA---GT------T-TTTC--CATTAAA----TTTGCGATTGG----AAAAGT---CT-GGCGGTAC-CCA-TTTAA---T-TA--TT-T------TAGC-TTTATTT-AT----ATG--A--C--T--ATTA-TGCTCAGGTTCCATAGTATAATA-G---AATGTTAACAATTAATGACAAAC---GATAA
gi|8 : tatttgaga-T-TA--GAAATGGTA-CTG---GTTGTGA--ATAT-AA----TTTCTTT-T-----TTGT-TAACAGATTC-GAACAATGCT---------TA--TATGAT-T-----A----GAA-G--C--TT-A----AG-A-----------T-----A-T-----T--TTATTTTTTG---------A--A---ACTGAAAA--GATA-ATAAAA------A-T-AAATCATCA---T-AT----GAGTGAGATACTGACAATTGAACTGAGTTGGT-C-------GATCA------A-ATT-------------------A-------CGCTTG---A---A--A-AAAT-TGACG-GTACCCTTT----AA----C-TTT---------------ATTTGAT-----TTTAAT-ATTCTT--TATATAACTATGTAAGAAACATAATTTAGTTCT--GAAAAGCT-----T-AAGTCATTGAAAA-CCAATAAAA-AATTATTGAAGATACATC-CTTT-C-----AAA---A----TATG-TAC-TGAAAATATAT------GATTTC-ACATAAAAT----------------------AC---CT-AGCAGTA--CCC-TTAAA---A-TA--TT-T-A----TACT-TTCATTT-AT----ATG--A--ATGT--A--A-TGCTGAAGTTTTGTACTTTTATG-A---GATAT-GATAT--AAT--TATAACTGAATAA-TTGAAGAC------AAA---TAATAAA----G----A---TGGACTACTGA--------------AATC------TG---ACA--------CT-TGGA-------AATTTT-T--AAT-GCATG-A--------GT--A--GAATTTTGAAgatactactgatactactattgatactactgaaatctgactctcaaatttcaatattgaagtatagttatggaaac
gi|9 : -----GTT-TA--T-T-CA--GAAAA--TATGTA---GGGGTTT--ATATTAA----CATCTTTGTCAATTTTGT-TAACCGATTT-TAATAATGTT---------CA--TATGTT-T-----A----GAAAG--C--TG-A----AT-ATATCT------T-----G-T-----T--TT------CG---------A--A---ACTGAAAA--GATA-ATTAAA------AGT-CCATTATCA---A-AT----AAATAAGATACACACATTTaattcaattcttcttggaacagagttttgaaaaat
gi|9 : C----ATTTATT-ATTCAAT-----TTTGAACATTCTT--TATATGTCTA-GTTC-AAACATAATGTAGTTCTA-GGAAAGCT------AAAGTTATTGAAAA-TAGATCAAG-ACTGACAGAAGGTACA-C-CTattattcaattttgaacattctttatatgtctagttcaaacataatgtagttctaggaaagctaaagttattgaaaatagatcaagactgacagaaggtacacctgaagtctttatattttaatttatatgaatataatgctgaagttttgtagttttatgtgatataacaaaatcaaattcagatgattggaagacaaataataaagttggactactgaaatttgaatctagggaattttcaattgttgagtagaattttgaaaactcgatgcaacttggagaagatttttgaaaaatgtcttaatctacttttccgtcaccatcccaagacttttagcgctcacagtgctttgattaaatattggacaaattagtaaaaatgc
gi|9 : gtttattcagaaaatatgtaggggtttatattaacatctttgtcaattttgttaaccgattttaataatgttcatatgtttagaaagctgaatatatcttgttttcgaaactgaaaagataattaaaagtccattatcaaataaataagatacacaA---CA-GAAGGTAC-ACC-T-GAA---G-TC--TT-T-A----TATT-TTAATTT-AT----ATG--A--A--T--ATAA-TGCTGAAGTTTTGTAGTTTTATGT----GATAT-AACAA--AAT--CAAATTCAGATGATTGGAAGAC------AAA---TAATAAA----G-------------T-TGGA--------------C---------TACTGAAA--------TT-TGAATCTAGGGAATTTT-C--AAT----TG-----TT-G-AGT-A--GAATTTTGAAgaagtctttatattttaatttatatgaatataatgctgaagttttgtagttttatgtgatataacaaaatcaaattcagatgattggaagacaaataataaagttggactactgaaatttgaatctagggaattttcaattgttgagtagaattttgaaaactcgatgcaacttggagaagatttttgaaaaatgtcttaatctacttttccgtcaccatcccaagacttttagcgctcacagtgctttgattaaatattggacaaattagtaaaaatgc
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TGATGTTGCGTAACTAAACTTCATTTGACTGGTTCATTTTACTTCCTGTTCGAAAAAGTACGAATACTGTCAACTGTATGCAGGCTATTGTGTTAGTGATGCAAAGTAAGGAAAATGGGTAAAACATATA
Unaligned ( gi|29 ): TCCGGTCATTTTGTAACCAAGTCATTTCGTAACTGCGTTTTTGGTCATTTCGTAACAGGTTTGAACTGTTGGATAATGTCGTAACCACTTTTTAGGTC
Unaligned ( gi|30 ): TCCGGTCATTTCGTAACCAAGTCATTTCGTAACTGTTTTTTTTTTGGTCGTTTCGTAACCATTTTTTCAGTCATTTCGTAACCACTT
Unaligned ( gi|31 ): TCTGGTCATTTCGTAACCAAGTCATTTTGTAACTGTTTTTTTTGGTCGTTTGTAACTATTTTTTCGGTCATTTCGTAACCAC
Unaligned ( gi|32 ): CTGTCATTTCGTAACCAAGTCATTTCGTAACCAAGTCTTTTCGTAACCCGTTTAAAATGTTGGTCAATCCGTAACCATATTT
Unaligned ( gi|34 ): TAACCAAGTCATTTCGTAACCGGGTTTTTTTTTCGGTCGTTTCGTAACCATTTTTTCGTTTTTTTACGAAATGACCG
Unaligned ( gi|36 ): TATGAGCACATGGATTTGATTCAATGCTGCTTGGAGTAGAGTTTTGA
Unaligned ( gi|37 ): GCACAAACACCACTGGACTGGTTCACTCCACTTCCTGT
Unaligned ( gi|38 ): TGAAGACAAATAATAAAGATGGACTACTGAA
Alignments
lowQualScore : 1111 1111 111111111111 1111 6666666666666666666666666666666666666666666666666666666 111111 11111111 222222222 111111111111 222222222 111 111111 111111 111111111 11 11 222222 77777777777777777777777777777777777777777777777777777777777777777777777777777777 111111111111111 111111111111 22
lowQualScore : 3 0 8888 55 666 3 4444 3 3 3 666 888888888888 3 33 2 4444 66 444 33 66666 1 66666 2 0 2 999999999 66 2 9999999999 33 33 2 3333333333333333333333333333333333333333333333333333333 33 444 33 2 666666 2 2 333 2 4444 2 2 33 222222 2 22222222 3 444 33 0 444444444 33 2 0 0 2 1 66 666666666666 5555 2 3 66666 5 2 1 1 33 1 444 2 333333333 00 44 2 1 666 2 66666 88888888 0 2 2 000000 44 1 0 444 2 5555 333333 33 2 111111111 2 999999 444 2 6666 33 11 33 33 77 2 0 444444 2 33 5555 3 2 77777 555 0 6666 55555555555555555555555555555555555555555555555555555555555555555555555555555555 000000000000000 2 5555 7777777 555555555555 1 2 1 2 666 77 33
lowQualScore : . . .... .. ... . .... . . . ... ............ . .. . .... .. ... .. ..... . ..... . . . ......... .. . .......... .. .. . ....................................................... .. ... .. . ...... . . ... . .... . . .. ...... . ........ . ... .. . ......... .. . . . . . .. ............ .... . . ..... . . . . .. . ... . ......... .. .. . . ... . ..... ........ . . . ...... .. . . ... . .... ...... .. . ......... . ...... ... . .... .. .. .. .. .. . . ...... . .. .... . . ..... ... . .... ................................................................................ ............... . .... ....... ............ . . . . ... .. ..
lowQualScore : 0 1 8888 55 444 6 1111 6 6 6 444 333333333333 1 99 7 5555 33 777 77 00000 1 22222 5 7 4 444444444 55 4 6666666666 11 11 2 0000000000000000000000000000000000000000000000000000000 22 111 11 2 111111 1 1 777 1 5555 6 2 11 666666 4 55555555 4 444 44 9 999999999 77 7 9 3 7 1 33 777777777777 3333 5 4 22222 0 5 9 8 44 2 222 5 888888888 66 22 5 1 333 7 77777 77777777 2 7 7 666666 88 1 1 444 4 3333 888888 77 5 555555555 9 666666 222 9 1111 77 00 77 77 33 7 2 222222 6 77 7777 7 4 11111 444 8 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111 444444444444444 5 3333 6666666 333333333333 9 5 0 5 222 55 44
consensus : AAGTGATGCCGAATAAGGGACC-GAT--GT---AA-A-CA-TGG-C-GGT-ACTGT---TAANTTTA-----GTT-TT--T-T-C--AGAAAN-GGTAGCTG---GCGGTGC--ATATTAA----CTTCTTTAT-----TTAT-TAACCGATTT-TAATAATGTT---------TA--TATGTT-T-----A----GAAAG--C--TT-A----AG-A-----------T-----G-T-----T--TC------CG---------A--A---ACTGAAAA--GATA-ATTAAA------A-T-CCATTATCA---A-AT----GAATGAGATACAGACAGTTGAANTGAGCTGGT-CATT--GCGATTA------A-ATT--------TACACAAT---ATTTTT--CGCTCG---G---A--A-AAACCTGGCG-GTACCCTTT---TAA----C-TTTTTC----ATTTATT-ATTCGAT-----TTT-A-ATATTCTT--TATATTTCTATGTAAGAAACATAATGTAGTTCTA-GGAAAGCT-----TAAAGTTATTGAAAA-TCGATCAAG-AATTACAGAAGATACA-C-CTTT-C-----AAA---A----TACG-TAC-TGAAAATATAT------TATTTC-GCATTAAAT---TTTGCGGTTGG----AAAAAA--C-C-G--GCGGTACCCC-TTAAA---A-TC--TT-T-A----TACT-TTTATTT-AT----ATG--A--A--T--A--A-TGCTGAAGTTCTGTAGTTTTATGTG---GATATAAACAA--AA----TCAAAATCGGATAATTTGAAGAC-----AAA---TAATAAA----GA------T-----------------CT---------------NTG-A--------------G---------TA---G----AA--------T------T-TTG----AA-------AA--C---------TCAATGC-TGCT-TG--GAGTA--GAGTTTTGAA
Reference ( family-870 ) : AAGTGATGCCGAATAAGGGACC-GAT--GT---AA-A-CA-TGG-C-GGT-ACTGT---TAANTTTA-----GTT-TT--T-T-C--AGAAAN-GGTAGCTG---GCGGTGC--ATATTAA----CTTCTTTAT-----TTAT-TAACCGATTT-TAATAATGTT---------TA--TATGTT-T-----A----GAAAG--C--TT-A----AG-A-----------T-----G-T-----T--TC------CG---------A--A---ACTGAAAA--GATA-ATTAAA------A-T-CCATTATCA---A-AT----GAATGAGATACAGACAGTTGAANTGAGCTGGT-CATT--GCGATTA------A-ATT--------TACACAAT---ATTTTT--CGCTCG---G---A--A-AAACCTGGCG-GTACCCTTT---TAA----C-TTTTTC----ATTTATT-ATTCGAT-----TTT-A-ANATTCTT--TATATTTCTATGTAAGAAACATAATGTAGTTCTA-GGAAAGCT-----TAAAGTTATTGAAAA-TCGATCAAG-AATTACAGAAGATACA-C-CTTT-C-----AAA---A----TACG-TAC-TGAAAATATAT------TATTTC-GCATTAAAT---TTTGCGGTTGG----AAAAAA--C-C-G--GCGGTACCCC-TTAAA---A-TC--TT-T-A----TACT-TTTATTT-AT----ATG--A--A--T--A--A-TGCTGAAGTTCTGTAGTTTTATGTG---GATATAAACAA--AA----TCAAAATCGGATAATTTGAAGAC-----AAA---TAATAAA----GA------T-----------------CT---------------NTG-A--------------G---------TA---G----AA--------T------T-TTG----AA-------AA--C---------TCAATGC-TGNT-TG--GA--A--GAATTTTGAA
gi|1 : TGCTGAATAGGGGATC-GTT--GT---AA-AACA-TGG-C-ACT-ACTGT---TAACTTTT-----TTT-TT--T-TTC--TGAAAG-AGTAGCTG---CTGGTGC--ATATTAA----CTATTTTAT-----TTAT-CAACTGATTT-TAATATTGTT---------TA--TAGGTT-T-----A----GAAAG--C--TT-AGAACAT-A-----------T-----ACT-----T--TT------CA---------A--C---ACTGAAAA--AATA-ATTAAA------A-T-CCATTTTTA---A-AT----GGATAAGATAAAGACAGTTAAACAGAGCTGGT-TATT--GTGATTA------A-ATT--------TACACAA----ATTTTT--A--TCA-------A--A-AAACCTGGCG-CTACCTTTTAAATAC----C-GTTTTC----ATTTATT-ATTTAAT-----TTT-A-ATATTGTC--TATATTTCTATGTAAGAAACATAATGTTATTCTG-GGAAAGCT-----TAA-GTTACTGAAAA-GTGATCAAG-AATTACAGAAGATACA-C-CTTT-T-----AAA---A----TATG-TAC-TGAAAATAAAT------TATTTC-CAATTAAAT---TTTGCAGATGG----AAAAAA--C-T-G--GGGGTACCCT-TTAA----------TT-T------TCCA-TTTATT
gi|1 : taagtttaacataaattaggaaattacttggtaatgcgcagctaaaatgcgtcatataatggtcagtgcatattcactgtgtaaaagtgatgtatatatacaattgT---AA-A-CA-GAG-CTGGTTATTGTGATTAAATTTACACAAATT-TT--TAT-C--AAAAA-----ACCTG---GCGCTAC--CTTTTAAATACCGTTTTCAT-----TTAT-TATTTAATTT-TAATATTGTC---------TA--TATTTC-TATGTAA----GAAA---C--AT-A----A--------------T-----G-T-----TATTC------TGGGAAAGCTTA--AGTTACTGAAAA--G-TG-ATCAAG------A-----ATTA-CA---G-A----------AGATACAC-CTTTTAAAATA---TG---TACT--GAAAATA------A-ATTAT------TTC-CAATTAAATTTTG--CAGATG---G---A--A-AAAACTGGGG-GTACCCTTT----AA------TTTTCC----ATTTATT-GTTCGGT-----TTT-A-ATATTATT--TACATTTCTATGTAAGAAACATAATAGAGTTTTA-AGAAAGC------TAAAGTTATTGAAGA-GTGATCAAG-AACAACAGAAGATACAGC-CTTT-C-----ATA---A----TATG-TGC-TGAAAATATAT------TATTTCAAAATTAAAT---TTTGAAA-TGG----AAAAAgttcggttttaatattatttacatttctatgtaagaaacataatagagttttaagaaagctaaagttattgaagagtgatcaagaacaacagaagatacagcctttcataatatgtgctgaaaatatattatttcaaaattaaattttgaaatggaaaaattttgtttttcagattttaacttacactt
gi|10 : taagtttaacataaattaggaaattacttggtaatgcgcagctaaaatgcgtcatataatggtcagtgcatattcactgtgtaaaagtgatgtatatatacaattgtgctgaataggggatcgttgtaaaacatggcactactgttaacttttttttttttctgaaagagtagctgctggtgcatattaactattttatttatcaactgattttaatattgtttataggtttagaaagcttagaacatatacttttcaacactgaaaaaataattaaaatccatttttaaatggataagataaagacagt--GATA-ATTAAA------G-A-TCATTATGA---A-AT----GAGTGAGATGCTGACAGTTGAAGTGAGCAGGT-CATT--GCAGTTA------A-ATT--------TTTACAAT---ATTTTTTTCATTTG---G---A--A-AAACTTGGCA-GTATCCTTT----AA----C-TTTTTA----GTTTATT-ATTTGAT-----TTT-A-GTAATCTT--TATATTTCTATGTAAGAAACATTATGTAGTTCTA-GAAAAG----------------TGAAA----GCTTAAG-AATTATGGAAGATGCAGC-TTTT-C-----AAA---AA---TTTG-TCT-TGAAAACATGT------T----T-GCAATAAAT---TTTGTTGTTGG----AAAAAA--C-A-G--GCCGTACAAC-TTAAA---AGTC--TT-C-T----TAAA-TTTATTA-AT----ATA--A--A--TGAA--A-TGCTTA-GTTCTGTAGTTTTATGTG----ATATAAACAA--AA----TTAAAATCAGATAATTTGAAGAC-----AAA---TAATATA----GA-----------------------------------------CTG-A--------------C---------TACTTA----AATCTGACTCT------T-TTC----AA-------AA--T---------TTTATTC-TTTTATG--TA--A---AATTTTAAAttttgtttttcagattttaacttacactt
gi|11 : AAG--C--TT-GG---AGTA-----------TCTA--G-T-----T--CC------CA---------A--A---ACTGAAA---GATA-ATTAAA------A-T-CTATTGTCA---A-AT----GAACG------AGACAGT----------TGGT-CATTTGGC-ATCA------A-ATT--------TACACAAT---ATCTTT---------------------AACCTGGTG-GTACCATTT---T-A----C-TTTTTC----ATTTATT-ATT--A----------A-ATATTCTT--TATA-TTCTATGTAAGAAACATTAT---GTTCTA-GGAAAGCT-----T-AATTTATTGAAAA-TTTATC--------ATAGA-----------TTT-C-----AAA---ATATGTATG-TAC-TGAAAATATAT------TATTTT-GC------------TGTGGT------------A--C-----------ATCC-----AA---A-TC--TTAT-A----GACTATTTGTTTGATTTTAATT--T--A--T--A--A--GATAAAGTTCTGTAGGTTCATGT----GATATATACTA--AA----TCAAAATCAGATAATATGAGTAC-----AAA---TTATAAA----GA------TGGACCACTGAAATTGGACT---------------TTT-A--------------A---------CAT--G----AA--------T------T-TTA----CA-------AG--G---------TCAATGC-TGCT-TC--GAGTA--GAGTaacgtgatactgctagaagtaaaaattttaagatttctaacctacttctccgccaagccatctgca
gi|12 : catgatcaattatttctttttaaaatcattAAAGGACCAGTT--TT---AA-A-CC-TGG-T-GGT-AGTGT---TAAGATTA-----GGT-AT--A-T-A--AGAAAG-AGTAGTTG---GTGGTTCTTATACTTA----CTTATTTAT-----TCAT-TAACCGATTTATAA-AATGTT---------TA--TAATTT-T-----A----AAAAG--C--TT-C----ATTA-----------TCTT--G-T-----T--TC------TG---------A--A---ACTGAAAA--TACA-TTTAGA------A-T-CCATTATCA---A-AT----GAAAGAGATACAGACAGTTGAAATGAGTTGGT-GATA--GCGATTA------A-ATT--------TACAAAAT---ATTTTT--CGCT-G---G---A--A-AAACTTGTCA-GTAGC-TTT---TAA----C-TTTTTC----ACTTATT-ATTGAAA-----TTC-A-ATGTATTC--TGTATTT-------------ATA------TTTT---------T-----TGAA-TAATTGAAA--TCGATCAAG-AATTTAAGAAG--------------------AA---A----TACA-TAC-TGAAAATATAT------TATTTT-GCATTAAAT---TTTGCTGATGA----AAAGAC--C-T-G--GCGATACTCC-TTAAA---
gi|13 : gAAGTGATGCAGCATAGGGCAAC--AT--GT---AA-AACA-TGG-C-GAT-ACTGT---TATATATA------TA-TT--T-T-T--AGAAAT-GGTTACTG---GCAGTGC--ATATTGA----CTTCTTTAA-----TTGT-TAACCGATTT-TAATAATGTTAACTGATTTTAATCATGTT-TTA---A----GAAAG--C--TT-A----GG-A-----------TATTTTG-T-----T--TT------AG---------A--A---ACTGAAAA--GATA-ATTAAA--------T-CCATTATCA---A-AT----GAATTAGATATAGACATTTAAACTGAGCTGGT-CATT--GCAATTA------A-A---------------------GTTTTT--CCCT-----G---A--A-AAAAATGATG-GTACCCTTT---TA-------TTTTT
gi|14 : gttgcaaccaacctccactggtctggttcactccacttcctgttctgaacaatacttagacttactgtatgcaggttattgtctaacaagttcTTTC----ATTTATT-ATTCAAT-----TTT-AGATATTCTT--TATGTGTCTATGTTCGAAACATATTGTAATTCTA-GGAAAG-G-----TAAATATATTGTAAA-TCGAACAAG-AATTATAAATGACA------TTT-C-----GAA---A----CGTG-CAC-TG-GAATAAAT------GATTTG-GCATT---TCTGTTTACGGTTGC----AAAAAATCT-C-G--GCTGTAC-------------------T-T-A----TACT-TTGATTT-AT----ATA--A--A--T--AT-ATTGCCTACGTTCTGAAGTTTCATGT----GATATAAACAA--AA----TCAAATTCGGACAATTTGAACAC-----AAA---TAATAAA----GA------TTGA--------------CT---------------ATG-A--------------AATCATGGATTA---G----AA--------T------T-T-------A-------AA--C---------TCAATGC-TGCT-TG--GAGTA--GAGTTTTGt
gi|15 : GATTA------A-ATT--------T-CACTAT---GTTTTT--CGCT-A---G---A--A-TAACCTGGCATATAA----T---TAA----C-GTTTTC----ATTTTTTTATTAGAA-----TTT-A-GTTTTTTTGTTATGTTTGTATGTAAGTAACATAGCGTAGTTTTA-GGAAAGC------TAAAGGTGTTTAAAT-TCGATCATGCAATTACGGAAGATACA-A-TCTT-CAGTCAAAA---A----TATG-TACGTGAAAATATAC------TATTTC-GCATCAAAT---TTT---GTTGGAGGAAAAAAA--C-T-G--GCATTACCAT-TTATA---A-TC--T
gi|16 : AGCTGAGCCGGT-CATT--GCGATTA------C-ATT--------TACACAAC---GTTTTT--CGGTCG---A---A--A-AAA-TTGATG-GTACCCATT---T--------TTTTTT----ATTTATT-ATTCTAC-----CTTAA-ATATTCTT--TATATATCTACGTAAGG-------------TCAA-GTAAAGC------TAAAGTGATTGACAC-GCTAT------ATT---------------CTTT-C-----GAA---G----TACG-TAC-TGAAAGTAGAT------TATTT--G-ATT--AT---TT---GGTTGG----AAAAAA--C-CTA--GCAGTAACAC-TTAAA---A-CC--TT-T-A----TACG-TTTATTT-AT----ATGTCT--A--T--A--A-TGCTGATGTTaaatatatggtcaataattctgtgaacagtttatattgtattcataattatctaaaaatgtaaataa
gi|17 : TTCTTT-------TCAT-TA-----TCT-TAATAATGTT---------TAAATATGTT-T-----A----AAAA---CAATT-A----GA-G-----------T-----A-TCGAGAT--TC------TA---------A--A---ACTGAAAAAAGACA-ATTAAA------A-C-CCGTTATCA---A-AT----GAACTAGATACAGACTGTTGAAATGAGCTGGG-CAAT--GCGATCA------A-ATT--------TACACAAT---AATTTT--CGCT-GAAAA---A--A-AAACTTATCA-GTACCA-TT---TAA----CTTTTTTC----ATTTATT-ATTGGAT-----TTT---------TT--TTTATTTATATGTAAg
gi|18 : tTTTTATTT--------TAAACAC--AA----TCCAAATCAGATGATTTTAAGAC-----AAA---TAATAAA----GAATAACTT-----------------CTCA-------------GTGAA--------------A---------TC---G----GA--------T------TCTTG----GC-------AATTT---------TTAAT-C-T-CT-AA--GT--A--GAATTTTGAattccatacgggtgtaga
gi|18 : ataaatgtgatgttaagtgcaaaatatggcggtatttttAAATCGGATTCTT----GGC-----AAT---TTTTA-------A------T-----------------CT---------------CTA-A--------------G---------TA---G----AA--------T------T-TTG----AG-------AA--C---------TCAATGC-TGCT-TT--GA--GTTGAGTTTGGAAgaactcaatgctgctttgagttgagtttggaaaaatatttaacctacttctcctccaagccatctgca
gi|19 : ataaatgtgatgttaagtgcaaaatatggcggtatttttttttattttaaacacaatccaaatcagatgattttaagacaaataataaagaataacttctcagtgAATAAGGAA---AAT--ATTTAAA-A-TA-AAG-C-AGC-ACTGT---TACTTTTA-----GTTGTT--T-T-CTTAGAAAT-GACAGTTG---GCGGTGC--CTATTTA----TTTaaatatttaacctacttctcctccaagccatctgca
gi|2 : tttgacgtcgtgtaatcactggactggttcactcttatttcctgtttggaaaattacgtagactggcttatgtaagcagtttattgtgtaaaacgtaatcgtaattgacagtatTGTCGAATAAGGGACA-GGT--GT---AA-A-AAATGGAC-GGT-ACTGT---TAACATTA-----GTG-TTAAT-T------AATC-TGTAACTG---GCTACGC--AAATTAA----ACTCTTTAT-----TGAT-TAACCATTTT-TAATCATG------------G--AAT-CT-T-----A----GAATA--T--CT-A-------------------------G-T-----T--TA------TA---------T--A---ACAGAACA--GATG-GTTAAT------A-T-CCATGATCA---A-AT----GCATGAGACACAAACAATTGAAAGGAGATGGT-CATA--ACGATTACATTA-A-ATTGACTCGTTTACACGAT---ACTTTT--CGCTCG---A---A--A-AATACTGGCA-GTACCCTTT----GA----C-TTTTTTTTTTATTTGTT-ATTCGATACGATTTC-G-ATATTCTT--GACATTTTT-T-TAA-----ATAAT--------A-AGAACG-T-----TAATGTTA--GAAAAATCGATCAAG-AATTACAAAAGATACAAC-CTTTAC-----ATATATG----TACGGTAC-TGAAAATATAT------TTGTTC-GCATTAA-T---CTTGCGTTTG-----AAAAAA--CAT-G--GCGGTACCGC-TTAAA---A-TG--TT-T-G-----A-T-TTTATTG-AT----ATG--A--A--T--ATAA-TGCTGAAGTTCTTTAGTTTTATAT----GATATCAACAA--AA----TAAAAATCTGATCATTTGAAGAC-----AAA---AAATAAA----GA------TGGA--------------CTACTGACATCTAACTCTTG-G--------------G---------GA---GTTTTAA--------T------C-TTGGAGTAG-------AA--CTTTAAAAACTCAATGC-TGAT-TG--GAGTA--GAATTTTGAAt
gi|2 : acaattgG-A--------------G---------TA---G----AA--------T------T-TTG----AA-------AA--C---------TCAATTC-TAAT-TA--GAGTA--GGATTTCGAAaactcaattctaattagagtaggatttcgaaaa
gi|20 : acaattgtgtcgaataagggacaggtgtaaaaaatggacggtactgttaacattagtgttaattaatctgtaactggctacgcaaattaaactctttattgattaaccatttttaatcatggaatcttagaatatctagtttatataacagaacagatggttaatatccatgatcaaatgcatgagacacaaacaattgaaaggagatggtcataacgattacattaaattgactcgtttacacgatacttttcgctcgaaaaatactggcagtaccctttgacttttttttttatttgttattcgatacgatttcgatattcttgacatttttttaaataataagaacgttaatgttagaaaaatcgatcaagaattacaaaagatacaacctttacatatatgtacggtactgaaaatatatttgttcgcattaatcttgcgtttgaaaaaacatggcggtaccgcttaaaatgtttgattttattgatatgaatataatgctgaagttctttagttttatatgatatcaacaaaataaaaatctgatcatttgaagacaaaaaataaagatggactactgacatctaactcttggggagttttaatcttggagtagaactttaaaaactcaatgctgattgAAGTGATGTAGATTATGGGA---AAT-----------------G-C-GGT-ATTGT---TA------------TT-TT----------GAAAT-GGTAGCTT---GCGGTGC--ATA-TAA----TTACTTTAT-----TTAT-TAACAGATTT-TAATTATGTT---------TA--AGTGAT-T-----T----GAATG--C--TG-A----Aaa
gi|21 : accccactggacgggtttattcagaaaaatatgaagactggctacgttatgcagtgtaacacgtag-A----TGCT-TTTATTG-AT----ATG--A--A--T--AGAA-TGTTGAAGTTCTGAAGTTTTATGT----GATATAAACAA--AA----TCAAt
gi|22 : -T-G----TGCT-TCAGTTT-AT-----TG--G--A--T--A------CTGAAGTTTTGTAGTTTTATGCG----ATATAAACAA--AA----TAAAAATCGGATAATCTGAAAAC-----CAA---TATTAAA----GA------T-----------------ctacgactttgttaataaaactttattcaatttagcagtattagaatattttgaactgccaaagttatagagagaatcttttgatggtcagtatatatt
gi|22 : tcaata-A--------------G---------TA---G----AA--------T------T-TTC----AA-------AA--C---------TCggactatcgatatctgacccttgaaatgttctaatcttaaagtagaattttcaaaactc
gi|23 : tcaatatgtgcttcagtttattggatactgaagttttgtagttttatgcgatataaacaaaataaaaatcggataatctgaaaaccaatattaaagatggactatcgatatctgacccttgaaatgttctaatcttaaCTTTAT-----TTATATAGCAATTTT-TAA-AATGTT---------TG--TATGTT-T-----T----GAATG--T--TT-A----GA-A-----------TATCTTG-T-----T--TC------TA---------A--G---TCTGAAAA--TATA-ATTAAA------A-T-CCGTTGTCA---A-TT----AAATGAGATA--------TGAGGTGAGCCGGT-CATT--TCG
gi|24 : AACCAATTT-TAATAATGTG---------TA--TACATT-T-----A----GAAAG--C--TT-C----AG---------------------------T--TC------T------------------CTTATTA--GATACACTAAATATATGA-T-ATAC-ATCA---A-AT----ATATGATATACA--CAGCTGAAATGAGCTAAT-CATT--GTGTTTT------A-ATT--------T--ACAAT---TTTTTT--taaccaagtcatttcgtaaccgttttt
gi|26 : -----GTT-TT--T-C-C--AAAAAT-GGTAGCTG---GCGAAGC--ATATCAA-----TTCGTTAT-----TGGT-TAACCGGTTT-TGATAATACT---------TA--TATGTT-T-----A----GATAG--C--T--------G-A-------------------------------------G---------A--A---ACTGACAT--GATA-GTTAAA------A-T-CAATT-TAA---ACAT----GAAagg
gi|27 : A---G----AA--------T------T-TTG----AG-------AA--C---------TCAATGC-TGCA-TGGAGA--A--GAGTTTTGat
gi|28 : taaatttgcacataattaaggcaaatgatatagatggactactgaaatctgtctctttggaattatttaatcttggA-------AA--C---------TCAATGC-TGCT-TG--GAGCA--GAGTTTTGAAt
gi|3 : AGTTATATCGAATATTGGAC---ATTAGT---AA-AGCA-TGA-C-----ACTGC---TGA-TTAA-----GTT-TT--T-T----AGAAAG-GGTAGTTGCTAACG-TGC--ATATCAA----TTTCTTTAT-----TTAT-TAACCGACTT-AAATAGTATT---------CA--TATGTG-T-----C----GAGAG--C--GT-A----GG-A-----------T-----A-T-----T--T--------------------------------A--GGT----------------T-CCA-----A---A-AC-------TGAAA---AGATAATTGAACTAAGCCGGT-TATT--ATGACTA------A-ATT--------TACTCAAT---AGTTTT--TATTTA---GCCTATTA-AAACCAGACG-GTA----TT---TG--------TTTTT----ATATAAT-ATTCGAA-----TTT-A-ATATTTCT--GGTATTTCTGTGTCAG-AACATAATGTAGCTC-A-CGAAAGC------------TATAGA-------ATCAAT-AATTACAGAAAATACATC-CTTT-C-----AAA---G----TAGG-CAC-TGAAAATATATTACCGGTATTTA-ATATAAACT---TTTGCGGTTGG----AAAAA-----C-GTAGCAATTTCCCAGTAAAT--A-TT--TT-CAA----TA-T-TGTGTT---T----ATG--AACA--T--A--C-TTCTGAAGTTCTTTCATTTTATGT----GATATAAACAA--TA----TCAGACTAAGTTGATTTCAAGAA-----AAA---TATTAAA----AA------T-----------------aaatgtctgatctatttctctactgatccatcaccagcccaagactttcagtgcttacagcactctgat
gi|3 : ttactatgtattaattatgtgtacA----AA------T-----------------CT---------------TTG-A--------------G---------TA---C----AA--------T------T-GTG----AA-------AA--C---------TCAGTAG-TACT-TC--GAGTA--GAATTTCGAAgaactcctgaaatctggcgtttggtgagtttaaatctttgagtacaattgtgaaaactcagtagtacttcgagtagaatttcgaaaaaatataatcccatatctccaagaagccgcctgcagagcagcgctttgatt
gi|33 : ttactatgtattaattatgtgtacagttatatcgaatattggacattagtaaagcatgacactgctgattaagttttttagaaagggtagttgctaacgtgcatatcaatttctttatttattaaccgacttaaatagtattcatatgtgtcgagagcgtaggatatttaggttccaaaactgaaaagataattgaactaagccggttattatgactaaatttactcaatagtttttatttagcctattaaaaccagacggtatttgtttttatataatattcgaatttaatatttctggtatttctgtgtcagaacataatgtagctcacgaaagctatagaatcaataattacagaaaatacatcctttcaaagtaggcactgaaaatatattaccggtatttaatataaacttttgcggttggaaaaacgtagcaatttcccagtaaatattttcaatattgtgtttatgaacatacttctgaagttctttcattttatgtgatataaacaatatcagactaagttgatttcaagaaaaatattaaaaatgaactcctgaaatctggcgtttggtgagtttTAAA------A-T-TCATTATCA---A-AT----GAATGAAATACAGACAGTTGAACTGAGCTAGT--ATT--aaaatataatcccatatctccaagaagccgcctgcagagcagcgctttgatt
gi|35 : aAT------AATTTT-GCATTAAAT---TTTGCAGTTCG----CAAAAA--C-CTG--GCGATA-TCT-TTAAttcgctcgaaaaggttaacgatgtcc
gi|36 : T---------------ATG-A--------------G---------CACATG----GA--------T------T-T---------------GA--T---------TCAATGC-TGCT-TG--GAGTA--GAGTTTTGAcg
gi|4 : TGTCGACTAAGGAACA-GAT--GT---AAGA-CA-TGG-T-GGT-TTTGG---CAAACGCA-----GTT-TT--T-G----AGAAAG-GGTAGCTG---GTTGGGA--ATCTTAG----CGTCGTTAT-----TTAT-TAA--------------TGTT---------TA--TATGTT-T-----A----GAAAT--A--TT-A----CA-A-----------T-------------T--TC------TA---------GTTA---A-TGAAAA--TATA-ATTAAA------A-C-TCATTATTC---A-AT----GAATTAGATACAGACAGTTAAACTGACCTGGT-CATT--GCGATTATATTTCATATT--------TACACAAT---ATCTAT--CGCTCG-------A--A-AAGCATGCTG-GTACC--TT---TAA----T-TTTTTT----AATTATG-ATTCGAT-----TTT-A--TATGTTT--TATATTTCTGCGTATGAATCATAGTGTTGTTCTATGGAAGAC-------AAAGTTATTGAAAA-TCAATCAAG-AATTTCAGGAGTTACAAC-CTTT-C-----ACT---A----TACG-AAC-TGAAAATATATAG----TATTTC-ACATTGAAT---TTTACGGTTGG----AAAAAAACC-T-G--GCAGTGCCCC-TTAAGTATA-TTATTT-T-AATTTTGAT-TTTATTT-AT----ATA--AGTA--T--A--A-TGCTGAAATTATGTAGTTTTATGTG---T-TATTTACAT--AA----TCAAACTTGGATAATTTAAACACAAAAAAAAGACTACTGAAATCTGACTT---T-----------------TT---------------GTG-AAATTTAATCTTGGTG---------TA---G----AA--------G------T-TTT----AA-------AA--C---------TCAATGC-TGCT-TA--GG--A--
gi|5 : ttgtaacacatattttcactgtgtaaaagggagtactcagttt-GAT--GT---AA-A-----GG-C-GTA-ACTGA---TA----------------T--T-T-T--AGAAAC-GGTAGATG---GCGATGC--ATATTAA----CTGGTTT---------------------T-TAATATTGAG---------TA--TATGTT-T-----A----GAAAG--C--TG-A----AG-A-----------TATCTTG-T-----T--TT------CG---------A--A---ACTGAAAA--GATA------------------CATTATCA---A-AT----GAATGAGATACAGACATTTAAAGTGAGCTGGTACATT--TCGCTCA------A-Attg
gi|5 : tttaaaagaaatataaatttgatatgcgagcataatgcactatatgcatacaatggccagtctacgtaatttgcctggcgctgaataccagtccaagttgtgctgggcgggtttattctgaaaaatagtGCTCAA-AAAAAACT---------GTTATTGAAAA-TCGA---AC-AATTATAGAAGCTACA-TTCTTT-C-----GGA---T----TACG-TCC-TTAAA-TAAAT------TATTTT-GCATTAAAT---TTTGTTGTTGG----AAAAAC--C-C-G--GCGGTACGCC-TTAAC---A-CT--TG-T-A----TACA-TTAATTT-AT----ATA--AATA--T--A--A-TGCTGACGTTCTGTAGCTGTATGTG---T-TATAAACAC--AA----TCAAATTCGAATAATTTGAGAAC-----AAaaaaactgttattgaaaatcgaacaattatagaagctacattctttcggattacgtccttaaataaattattttgcattaaattttgttgttggaaaaacccggcggtacgccttaacacttgtatacattaatttatataaatataatgctgacgttctgtagctgtatgtgttataaacacaatcaaattcgaataatttgagaacaattctaaattatggagatttaagaaaaaaaaacaaaaactaccgaaatctgattcttgggaatttttaatcttggagcagaattttaaaaactcgatgctgcttagagtagagttttaaagaatatctgacctacttct
gi|5 : tttaaaagaaatataaatttgatatgcgagcataatgcactatatgcatacaatggccagtctacgtaatttgcctggcgctgaataccagtccaagttgtgctgggcgggtttattctgaaaaatagtgatgtaaaggcgtaactgatattttagaaacggtagatggcgatgcatattaactggtttttaatattgagtatatgtttagaaagctgaagatatcttgttttcgaaactgaaaagatacattatcaaatgaatgagatacagacatttaaagtgagctggtacatttcG--A--A--C--A--A-TTCTAAA-TTATGGAGATTTAAGAA---AAAA-AAACAA--AAACTACCGAAATCTGATTCTTGGGA----------A---TTTTTAA------------T-----------------CT---------------TGG-A--------------G---------CA---G----AA--------T------T-TTA----AA-------AA--C---------TCGATGC-TGCT-TA--GAGTA--GAGTTTTAAAttctaaattatggagatttaagaaaaaaaaacaaaaactaccgaaatctgattcttgggaatttttaatcttggagcagaattttaaaaactcgatgctgcttagagtagagttttaaagaatatctgacctacttct
gi|6 : tttaaaagaaatataaatttgatatgcgagcataatgcactatatgcatacaatggccagtctacgtaatttgcctggcgctgaataccagtccaagttgtgctgggcgggtttattctgaaaaatagtgatgtaaaggcgtaactgatattttagaaacggtagatggcgatgcatattaactggtttttaatattgagtatatgtttagaaagctgaagatatcttgttttcgaaactgaaaagatacattatcaaatgaatgagatacagacatttaaagtgagctggtacatttcgctcaaaaaaaactgttattgaaaatcgaacaattatagaagctacattctttcggattacgtccttaaataaattattttgcattaaattttgttgttggaaaaacccggcggtacgccttaacacttgtatacattaatttatataaatataatgctgacgttctgtagctgtatgtgttataaacacaatcaaattcgaataatttgaAAGTGATGCAAAGTAAGCGGCT-GGT--GT---AA-A-TA-TGA-C-AAT-ACTGT---TAAATTTA-----GTT-TT--T-T-C--TGAAAG-GATAGCTG----CAACTC--ATATTTA----TTTCTTTAT-----TTAT-TTACCAATTT-TAATAACGTT---------AA--TATATT-T-----A----GAAAA--A--TC-A----AG-A-----------T-----G-T-----T--TC------CG---------A--A---ACTGAAAA--GATA-ATTAAG------A-T-CCATTATCA---A-GT----GAATGAGGTACAGGCAGTTAAACTGAGCTGGT-CATT--GCAATTA------A-ATT--------TACACAAT---ATTTTT--TACTTG---G---A--A-AAACCTGACG-GTACCCTTT---TAA----C-TTTACC----ATTTATT-ATTTGAT-----TTT-A-AAATTGCT--TATGTTTCTATGTAAGAAACATAATGGAGTTCTG-GTAAAGCTTAGTATAAAGTTATTGAAAA-TCGACCAAG-AGTAATAGAAGATACA-C-CTTT-C-----AAA---A----TATG-AAC-TGAAAATGTAT------CATTTT-GCATTAAAT---GTTTCCGTTGG----GAAAAA--C-A-G--TTGGTACCCC-TTAAA---A-CC--TT-T-A----CACT-TTTATTT-AT----ATG--A--A--T--A--A-TAATAAAGTTCTGTGGTTTTATGTGTCAGATATAAACAA--AA----TCAAAATCTGATAATTTGAAAAC-----AAA---TAATAAA----GA------T-----------------CT---------------GTG-A--------------G---------TA---A----AA--------T------T-ATG----AA-------AA--C---------TCAATTC-TGAT-TG--G---A--GAATTTTGAAgaatatctgacctacttct
gi|7 : T--T-T-G--AGAAAAAGGTAGCTG---GCAGTGC--ATATATT----CTTCTTTAT-----ACAT-TAACCGATTT-TAATAATTTT---------TA--TATGTTGT-----ATGTTGAAAGAAC--TTAA----AG-ATTAAAATATTTT-----G-T-----T--TT------CA---------A--A---ACGGAAAA--GAAA-ATTAAG------A-TAATATTATTAAGGA-ATTTAGGAATGAGATACATACAGTTAA-------------GTT--GCGATTA------A-AAT--------TATACACT---ACGTTT--TGCTT--------A--ATAAACCTTGCG-GTA-CTTTT---TAACTTTC-TTTCTC----ATTTATA-ATTGGAT-----ATT-A-ATATAATT--TATATTTCTATGTAAGGTATATAACGTAGTTCCA-GGAAAGC------TAAAATTATTAGAAA-TCGTTCAAC-AATTACGGAA-ATAAA-C-TTTT-C-----AAA---A----TACT-CCC-TTAAAA---GT------T-TTTC--CATTAAA----TTTGCGATTGG----AAAAGT--C-T-G--GCGGTACCCA-TTTAA---T-TA--TT-T------TAGC-TTTATTT-AT----ATG--A--C--T--ATTA-TGCTCAGGTTCCATAGTATAATA-G---AATGTTAACAATTAA----TGACAAAC-GATAA
gi|8 : ta-T-T--AGAAAT-GGTA-CTG---GTTGTGA--ATAT-AA----TTTCTTT-T-----TTGT-TAACAGATTC-GAACAATGCT---------TA--TATGAT-T-----A----GAA-G--C--TT-A----AG-A-----------T-----A-T-----T--TTATTTTTTG---------A--A---ACTGAAAA--GATA-ATAAAA------A-T-AAATCATCA---T-AT----GAGTGAGATACTGACAATTGAACTGAGTTGGT-C-------GATCA------A-ATT-------------------A-------CGCTTG---A---A--A-AAAT-TGACG-GTACCCTTT----AA----C-TTT---------------ATTTGAT-----TTT-A-ATATTCTT--TATATAACTATGTAAGAAACATAATTTAGTTCT--GAAAAGCT-----T-AAGTCATTGAAAA-CCAATAAAA-AATTATTGAAGATACATC-CTTT-C-----AAA---A----TATG-TAC-TGAAAATATAT------GATTTC-ACAT-----------------------AAAATA--C-CTA--GCAGTA-CCC-TTAAA---A-TA--TT-T-A----TACT-TTCATTT-AT----ATG--A--ATGT--A--A-TGCTGAAGTTTTGTACTTTTATG-A---GATAT-GATAT--AA----TTATAACTGAATAA-TTGAAGAC-----AAA---TAATAAA----GA------TGGA--------------CTA--------------CTG-A----------------------------------AA--------TCTGACAC-TTG----GA-------AATTT---------TTAATGCATGAG-T-------A--GAATTTTGAAgatactactgatactactattgatactactgaaatctgactctcaaatttcaatattgaagtatagttatggaaac
gi|9 : -----GTT-TA--T-T-C--AGAAAA---TATGTA---GGGGTTT--ATATTAA----CATCTTTGTCAATTTTGT-TAACCGATTT-TAATAATGTT---------CA--TATGTT-T-----A----GAAAG--C--TG-A----AT-ATATCT------T-----G-T-----T--TT------CG---------A--A---ACTGAAAA--GATA-ATTAAA------AGT-CCATTATCA---A-AT----AAATAAGATACACACATTTaattcaattcttcttggaacagagttttgaaaaat
gi|9 : C----ATTTATT-ATTCAAT-----TTTGA-ACATTCTT--TATATGTCTA-GTTC-AAACATAATGTAGTTCTA-GGAAAGCT------AAAGTTATTGAAAA-TAGATCAAG-ACTGACAGAAGGTACA-C-CTattattcaattttgaacattctttatatgtctagttcaaacataatgtagttctaggaaagctaaagttattgaaaatagatcaagactgacagaaggtacacctgaagtctttatattttaatttatatgaatataatgctgaagttttgtagttttatgtgatataacaaaatcaaattcagatgattggaagacaaataataaagttggactactgaaatttgaatctagggaattttcaattgttgagtagaattttgaaaactcgatgcaacttggagaagatttttgaaaaatgtcttaatctacttttccgtcaccatcccaagacttttagcgctcacagtgctttgattaaatattggacaaattagtaaaaatgc
gi|9 : gtttattcagaaaatatgtaggggtttatattaacatctttgtcaattttgttaaccgattttaataatgttcatatgtttagaaagctgaatatatcttgttttcgaaactgaaaagataattaaaagtccattatcaaataaataagatacacaGGTACACC-T-GAA---G-TC--TT-T-A----TATT-TTAATTT-AT----ATG--A--A--T--ATAA-TGCTGAAGTTTTGTAGTTTTATGT----GATAT-AACAA--AA----TCAAATTCAGATGATTGGAAGAC-----AAA---TAATAAA----G--------------------------T---------------TGG-A--------------C---------TACT-G----AA--------A------T-TTG----AATCTAGGGAATTT---------TCAAT---TGTT-GA--GT--A--GAATTTTGAAgaagtctttatattttaatttatatgaatataatgctgaagttttgtagttttatgtgatataacaaaatcaaattcagatgattggaagacaaataataaagttggactactgaaatttgaatctagggaattttcaattgttgagtagaattttgaaaactcgatgcaacttggagaagatttttgaaaaatgtcttaatctacttttccgtcaccatcccaagacttttagcgctcacagtgctttgattaaatattggacaaattagtaaaaatgc
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TGATGTTGCGTAACTAAACTTCATTTGACTGGTTCATTTTACTTCCTGTTCGAAAAAGTACGAATACTGTCAACTGTATGCAGGCTATTGTGTTAGTGATGCAAAGTAAGGAAAATGGGTAAAACATATA
Unaligned ( gi|29 ): TCCGGTCATTTTGTAACCAAGTCATTTCGTAACTGCGTTTTTGGTCATTTCGTAACAGGTTTGAACTGTTGGATAATGTCGTAACCACTTTTTAGGTC
Unaligned ( gi|30 ): TCCGGTCATTTCGTAACCAAGTCATTTCGTAACTGTTTTTTTTTTGGTCGTTTCGTAACCATTTTTTCAGTCATTTCGTAACCACTT
Unaligned ( gi|31 ): TCTGGTCATTTCGTAACCAAGTCATTTTGTAACTGTTTTTTTTGGTCGTTTGTAACTATTTTTTCGGTCATTTCGTAACCAC
Unaligned ( gi|32 ): CTGTCATTTCGTAACCAAGTCATTTCGTAACCAAGTCTTTTCGTAACCCGTTTAAAATGTTGGTCAATCCGTAACCATATTT
Unaligned ( gi|34 ): TAACCAAGTCATTTCGTAACCGGGTTTTTTTTTCGGTCGTTTCGTAACCATTTTTTCGTTTTTTTACGAAATGACCG
Unaligned ( gi|37 ): GCACAAACACCACTGGACTGGTTCACTCCACTTCCTGT
Unaligned ( gi|38 ): TGAAGACAAATAATAAAGATGGACTACTGAA
Alignments
lowQualScore : 1111 1111 111111111111 1111 66666666666666666666666666666666666666666666666666666666 111111 11111111 222222222 11111111 222222222 111 111111 111111 111111111 11 11 222222 66666666666666666666666666666666666666666666666666666666666666 11
lowQualScore : 3 0 8888 55 666 3 4444 3 3 3 666 888888888888 3 33 2 4444 66 444 33 66666 1 66666 2 0 2 999999999 66 2 9999999999 33 33 55555555555555555555555555555555555555555555555555555555 33 444 33 2 666666 2 2 555 4444 3 2 33 222222 2 22222222 3 444 33 0 444444444 33 2 0 0 2 88 11111111 777777777 2 3 66666 5 2 1 33 1 444 2 333333333 00 44 2 1 666 2 66666 88888888 0 2 2 000000 44 1 0 444 2 5555 333333 33 2 111111111 2 999999 444 2 6666 33 11 33 33 77 2 0 444444 2 33 5555 3 2 77777 555 0 6666 00000000000000000000000000000000000000000000000000000000000000 2 777777 2 7777777 2 22 2 5 2 44
lowQualScore : . . .... .. ... . .... . . . ... ............ . .. . .... .. ... .. ..... . ..... . . . ......... .. . .......... .. .. ........................................................ .. ... .. . ...... . . ... .... . . .. ...... . ........ . ... .. . ......... .. . . . . .. ........ ......... . . ..... . . . .. . ... . ......... .. .. . . ... . ..... ........ . . . ...... .. . . ... . .... ...... .. . ......... . ...... ... . .... .. .. .. .. .. . . ...... . .. .... . . ..... ... . .... .............................................................. . ...... . ....... . .. . . . ..
lowQualScore : 0 1 8888 55 444 6 1111 6 6 6 444 333333333333 1 99 7 5555 33 777 77 00000 1 22222 5 7 4 444444444 55 4 6666666666 11 11 22222222222222222222222222222222222222222222222222222222 22 111 11 2 111111 1 1 888 5555 9 2 11 666666 4 55555555 4 444 44 9 999999999 77 7 9 3 7 55 11111111 444444444 5 4 22222 0 5 8 44 2 222 5 888888888 66 22 5 1 333 7 77777 77777777 2 7 7 666666 88 1 1 444 4 3333 888888 77 5 555555555 9 666666 222 9 1111 77 00 77 77 33 7 2 222222 6 77 7777 7 4 11111 444 8 1111 22222222222222222222222222222222222222222222222222222222222222 5 222222 5 6666666 4 99 4 6 4 00
consensus : AAGTGATGCCGAATAAGGGACC-GAT--GT---AA-A-CA-TGG-C-GGT-ACTGT---TAANTTTA-----GTT-TT--T-T-C--AGAAAN-GGTAGCTG---GCGGTGC--ATATTAA----CTTCTTTAT-----TTAT-TAACCGATTT-TAATAATGTT---------TA--TATGTT-T-----A----GAAAG--C--TTA----A-G-A-----T-----------G-T-----T--TC------CG---------A--A---ACTGAAAA--GATA-ATTAAA------A-TC-CATTATCAA---AT----GAATGAGATACAGACAGTTGAANTGAGCTGGT-CATT--GCGATTA------A-ATT--------TACACAAT---ATTTTT--CGCTCG---G---A--A-AAACCTGGCG-GTACCCTTT---TAAC-TTTTT----C----ATTTATT-ATTCGAT-----TTT-A-ATATTCTT--TATATTTCTATGTAAGAAACATAATGTAGTTCTA-GGAAAGCT-----TAAAGTTATTGAAAA-TCGATCAAG-AATTACAGAAGATACA-C-CTTT-C-----AAA---A----TACG-TAC-TGAAAATATAT------TATTTC-GCATTAAAT---TTTGCGGTTGG----AAAAAA--C-C-G--GCGGTACCCC-TTAAA---A-TC--TT-T-A----TACT-TTTATTT-AT----ATG--A--A--T--A--A-TGCTGAAGTTCTGTAGTTTTATGTG---GATATAAACAA--AA----TCAAAATCGGATAATTTGAAGAC-----AAA---TAATAAA----GA------T-----------------CT--NTG-A--------------G---------TA---GAA-T------T-TTGAA-------A-A--CTC-AATGC-TGCTT-GGAGTAGAGTTTTGAA
Reference ( family-870 ) : AAGTGATGCCGAATAAGGGACC-GAT--GT---AA-A-CA-TGG-C-GGT-ACTGT---TAANTTTA-----GTT-TT--T-T-C--AGAAAN-GGTAGCTG---GCGGTGC--ATATTAA----CTTCTTTAT-----TTAT-TAACCGATTT-TAATAATGTT---------TA--TATGTT-T-----A----GAAAG--C--TTA----A-G-A-----T-----------G-T-----T--TC------CG---------A--A---ACTGAAAA--GATA-ATTAAA------A-TC-CATTATCAA---AT----GAATGAGATACAGACAGTTGAANTGAGCTGGT-CATT--GCGATTA------A-ATT--------TACACAAT---ATTTTT--CGCTCG---G---A--A-AAACCTGGCG-GTACCCTTT---TAAC-TTTTT----C----ATTTATT-ATTCGAT-----TTT-A-ATATTCTT--TATATTTCTATGTAAGAAACATAATGTAGTTCTA-GGAAAGCT-----TAAAGTTATTGAAAA-TCGATCAAG-AATTACAGAAGATACA-C-CTTT-C-----AAA---A----TACG-TAC-TGAAAATATAT------TATTTC-GCATTAAAT---TTTGCGGTTGG----AAAAAA--C-C-G--GCGGTACCCC-TTAAA---A-TC--TT-T-A----TACT-TTTATTT-AT----ATG--A--A--T--A--A-TGCTGAAGTTCTGTAGTTTTATGTG---GATATAAACAA--AA----TCAAAATCGGATAATTTGAAGAC-----AAA---TAATAAA----GA------T-----------------CT--NTG-A--------------G---------TA---GAA-T------T-TTGAA-------A-A--CTC-AATGC-TGCTT-GGAGTAGAGTTTTGAA
gi|1 : TGCTGAATAGGGGATC-GTT--GT---AA-AACA-TGG-C-ACT-ACTGT---TAACTTTT-----TTT-TT--T-TTC--TGAAAG-AGTAGCTG---CTGGTGC--ATATTAA----CTATTTTAT-----TTAT-CAACTGATTT-TAATATTGTT---------TA--TAGGTT-T-----A----GAAAG--C--TTAGAACA-T-A-----T-----------ACT-----T--TT------CA---------A--C---ACTGAAAA--AATA-ATTAAA------A-TC-CATTTTTAA---AT----GGATAAGATAAAGACAGTTAAACAGAGCTGGT-TATT--GTGATTA------A-ATT--------TACACAA----ATTTTT--A--TCA-------A--A-AAACCTGGCG-CTACCTTTTAAATACC-GTTTT----C----ATTTATT-ATTTAAT-----TTT-A-ATATTGTC--TATATTTCTATGTAAGAAACATAATGTTATTCTG-GGAAAGCT-----TAA-GTTACTGAAAA-GTGATCAAG-AATTACAGAAGATACA-C-CTTT-T-----AAA---A----TATG-TAC-TGAAAATAAAT------TATTTC-CAATTAAAT---TTTGCAGATGG----AAAAAA--C-T-G--GGGGTACCCT-TTAA----------TT-T------TCCA-TTTATT
gi|1 : taagtttaacataaattaggaaattacttggtaatgcgcagctaaaatgcgtcatataatggtcagtgcatattcactgtgtaaaagtgatgtatatatacaattgT---AA-A-CA-GAG-CTGGTTATTGTGATTAAATTTACACAAATT-TT--TAT-C--AAAAA-----ACCTG---GCGCTAC--CTTTTAAATACCGTTTTCAT-----TTAT-TATTTAATTT-TAATATTGTC---------TA--TATTTC-TATGTAA----GAAA---C--ATA----A---------T-----------G-T-----TATTC------TGGGAAAGCTTA--AGTTACTGAAAA--G-TG-ATCAAG------A-----ATTA-CAG---A----------AGATACAC-CTTTTAAAATA---TG---TACT--GAAAATA------A-ATTAT------TTC-CAATTAAATTTTG--CAGATG---G---A--A-AAAACTGGGG-GTACCCTTT----AA--TTTTC----C----ATTTATT-GTTCGGT-----TTT-A-ATATTATT--TACATTTCTATGTAAGAAACATAATAGAGTTTTA-AGAAAGC------TAAAGTTATTGAAGA-GTGATCAAG-AACAACAGAAGATACAGC-CTTT-C-----ATA---A----TATG-TGC-TGAAAATATAT------TATTTCAAAATTAAAT---TTTGAAA-TGG----AAAAAgttcggttttaatattatttacatttctatgtaagaaacataatagagttttaagaaagctaaagttattgaagagtgatcaagaacaacagaagatacagcctttcataatatgtgctgaaaatatattatttcaaaattaaattttgaaatggaaaaattttgtttttcagattttaacttacactt
gi|10 : taagtttaacataaattaggaaattacttggtaatgcgcagctaaaatgcgtcatataatggtcagtgcatattcactgtgtaaaagtgatgtatatatacaattgtgctgaataggggatcgttgtaaaacatggcactactgttaacttttttttttttctgaaagagtagctgctggtgcatattaactattttatttatcaactgattttaatattgtttataggtttagaaagcttagaacatatacttttcaacactgaaaaaataattaaaatccatttttaaatggataagataaagacagt--GATA-ATTAAA------G-AT-CATTATGAA---AT----GAGTGAGATGCTGACAGTTGAAGTGAGCAGGT-CATT--GCAGTTA------A-ATT--------TTTACAAT---ATTTTTTTCATTTG---G---A--A-AAACTTGGCA-GTATCCTTT----AAC-TTTTT----A----GTTTATT-ATTTGAT-----TTT-A-GTAATCTT--TATATTTCTATGTAAGAAACATTATGTAGTTCTA-GAAAAG----------------TGAAA----GCTTAAG-AATTATGGAAGATGCAGC-TTTT-C-----AAA---AA---TTTG-TCT-TGAAAACATGT------T----T-GCAATAAAT---TTTGTTGTTGG----AAAAAA--C-A-G--GCCGTACAAC-TTAAA---AGTC--TT-C-T----TAAA-TTTATTA-AT----ATA--A--A--TGAA--A-TGCTTA-GTTCTGTAGTTTTATGTG----ATATAAACAA--AA----TTAAAATCAGATAATTTGAAGAC-----AAA---TAATATA----GA------ttttgtttttcagattttaacttacactt
gi|11 : AAG--C--TTGG---A-GTA-----TCTA--------G-T-----T--CC------CA---------A--A---ACTGAAA---GATA-ATTAAA------A-TC-TATTGTCAA---AT----GAACG------AGACAGT----------TGGT-CATTTGGC-ATCA------A-ATT--------TACACAAT---ATCTTT---------------------AACCTGGTG-GTACCATTT---T-AC-TTTTT----C----ATTTATT-ATT--A----------A-ATATTCTT--TATA-TTCTATGTAAGAAACATTAT---GTTCTA-GGAAAGCT-----T-AATTTATTGAAAA-TTTATC--------ATAGA-----------TTT-C-----AAA---ATATGTATG-TAC-TGAAAATATAT------TATTTT-GC------------TGTGGT------------A--C-----------ATCC-----AA---A-TC--TTAT-A----GACTATTTGTTTGATTTTAATT--T--A--T--A--A--GATAAAGTTCTGTAGGTTCATGT----GATATATACTA--AA----TCAAAATCAGATAATATGAGTAC-----AAA---TTATAAA----GA------TGGACCACTGAAATTGGACT--TTT-A--------------A---------CAT--GAA-T------T-TTACA-------A-G--GTC-AATGC-TGCTT-CGAGTAGAGTctgactacttaaatctgactcttttcaaaattttattcttttatgtaaaattttaaaaacgtgatactgctagaagtaaaaattttaagatttctaacctacttctccgccaagccatctgca
gi|12 : catgatcaattatttctttttaaaatcattAAAGGACCAGTT--TT---AA-A-CC-TGG-T-GGT-AGTGT---TAAGATTA-----GGT-AT--A-T-A--AGAAAG-AGTAGTTG---GTGGTTCTTATACTTA----CTTATTTAT-----TCAT-TAACCGATTTATAA-AATGTT---------TA--TAATTT-T-----A----AAAAG--C--TTC----A-TTA-----TCTT--------G-T-----T--TC------TG---------A--A---ACTGAAAA--TACA-TTTAGA------A-TC-CATTATCAA---AT----GAAAGAGATACAGACAGTTGAAATGAGTTGGT-GATA--GCGATTA------A-ATT--------TACAAAAT---ATTTTT--CGCT-G---G---A--A-AAACTTGTCA-GTAGC-TTT---TAAC-TTTTT----C----ACTTATT-ATTGAAA-----TTC-A-ATGTATTC--TGTATTT-------------ATA------TTTT---------T-----TGAA-TAATTGAAA--TCGATCAAG-AATTTAAGAAG--------------------AA---A----TACA-TAC-TGAAAATATAT------TATTTT-GCATTAAAT---TTTGCTGATGA----AAAGAC--C-T-G--GCGATACTCC-TTAAA---
gi|13 : gAAGTGATGCAGCATAGGGCAAC--AT--GT---AA-AACA-TGG-C-GAT-ACTGT---TATATATA------TA-TT--T-T-T--AGAAAT-GGTTACTG---GCAGTGC--ATATTGA----CTTCTTTAA-----TTGT-TAACCGATTT-TAATAATGTTAACTGATTTTAATCATGTT-TTA---A----GAAAG--C--TTA----G-G-A-----TATTTT------G-T-----T--TT------AG---------A--A---ACTGAAAA--GATA-ATTAAA--------TC-CATTATCAA---AT----GAATTAGATATAGACATTTAAACTGAGCTGGT-CATT--GCAATTA------A-A---------------------GTTTTT--CCCT-----G---A--A-AAAAATGATG-GTACCCTTT---TA---TTTTT----
gi|14 : gttgcaaccaacctccactggtctggttcactccacttcctgttctgaacaatacttagacttactgtatgcaggttattgtctaacaagttcTTT----C----ATTTATT-ATTCAAT-----TTT-AGATATTCTT--TATGTGTCTATGTTCGAAACATATTGTAATTCTA-GGAAAG-G-----TAAATATATTGTAAA-TCGAACAAG-AATTATAAATGACA------TTT-C-----GAA---A----CGTG-CAC-TG-GAATAAAT------GATTTG-GCATT---TCTGTTTACGGTTGC----AAAAAATCT-C-G--GCTGTAC-------------------T-T-A----TACT-TTGATTT-AT----ATA--A--A--T--AT-ATTGCCTACGTTCTGAAGTTTCATGT----GATATAAACAA--AA----TCAAATTCGGACAATTTGAACAC-----AAA---TAATAAA----GA------TTGA--------------CT--ATG-A--------------AATCATGGATTA---GAA-T------T-T---A-------A-A--CTC-AATGC-TGCTT-GGAGTAGAGTTTTGt
gi|15 : GATTA------A-ATT--------T-CACTAT---GTTTTT--CGCT-A---G---A--A-TAACCTGGCATATAA----T---TAAC-GTTTT----C----ATTTTTTTATTAGAA-----TTT-A-GTTTTTTTGTTATGTTTGTATGTAAGTAACATAGCGTAGTTTTA-GGAAAGC------TAAAGGTGTTTAAAT-TCGATCATGCAATTACGGAAGATACA-A-TCTT-CAGTCAAAA---A----TATG-TACGTGAAAATATAC------TATTTC-GCATCAAAT---TTT---GTTGGAGGAAAAAAA--C-T-G--GCATTACCAT-TTATA---A-TC--T
gi|16 : AGCTGAGCCGGT-CATT--GCGATTA------C-ATT--------TACACAAC---GTTTTT--CGGTCG---A---A--A-AAA-TTGATG-GTACCCATT---T----TTTTT----T----ATTTATT-ATTCTAC-----CTTAA-ATATTCTT--TATATATCTACGTAAGG-------------TCAA-GTAAAGC------TAAAGTGATTGACAC-GCTAT------ATT---------------CTTT-C-----GAA---G----TACG-TAC-TGAAAGTAGAT------TATTT--G-ATT--AT---TT---GGTTGG----AAAAAA--C-CTA--GCAGTAACAC-TTAAA---A-CC--TT-T-A----TACG-TTTATTT-AT----ATGTCT--A--T--A--A-TGCTGATGTTaaatatatggtcaataattctgtgaacagtttatattgtattcataattatctaaaaatgtaaataa
gi|17 : TTCTTT-------TCAT-TA-----TCT-TAATAATGTT---------TAAATATGTT-T-----A----AAAA---CAATTA----G-A-G-----T-----------A-TCGAGAT--TC------TA---------A--A---ACTGAAAAAAGACA-ATTAAA------A-CC-CGTTATCAA---AT----GAACTAGATACAGACTGTTGAAATGAGCTGGG-CAAT--GCGATCA------A-ATT--------TACACAAT---AATTTT--CGCT-GAAAA---A--A-AAACTTATCA-GTACCA-TT---TAACTTTTTT----C----ATTTATT-ATTGGAT-----TTT---------TT--TTTATTTATATGTAAg
gi|18 : tTTTTATTT--------TAAACAC--AA----TCCAAATCAGATGATTTTAAGAC-----AAA---TAATAAA----GAATAACTT-----------------CTCAGTGAA--------------A---------TC---GGA-T------TCTTGGC-------A-ATTTTT-AAT-----CTC-TAAGTAGAATTTTGAattccatacgggtgtaga
gi|18 : ataaatgtgatgttaagtgcaaaatatggcggtatttttAAATCGGATTCTT----GGC-----AAT---TTTTA-------A------T-----------------CT--CTA-A--------------G---------TA---GAA-T------T-TTGAG-------A-A--CTC-AATGC-TGCTT-TGAGTTGAGTTTGGAAgaactcaatgctgctttgagttgagtttggaaaaatatttaacctacttctcctccaagccatctgca
gi|19 : ataaatgtgatgttaagtgcaaaatatggcggtatttttttttattttaaacacaatccaaatcagatgattttaagacaaataataaagaataacttctcagtgAATAAGGAA---AAT--ATTTAAA-A-TA-AAG-C-AGC-ACTGT---TACTTTTA-----GTTGTT--T-T-CTTAGAAAT-GACAGTTG---GCGGTGC--CTATTTA----TTTaaatatttaacctacttctcctccaagccatctgca
gi|2 : tttgacgtcgtgtaatcactggactggttcactcttatttcctgtttggaaaattacgtagactggcttatgtaagcagtttattgtgtaaaacgtaatcgtaattgacagtatTGTCGAATAAGGGACA-GGT--GT---AA-A-AAATGGAC-GGT-ACTGT---TAACATTA-----GTG-TTAAT-T------AATC-TGTAACTG---GCTACGC--AAATTAA----ACTCTTTAT-----TGAT-TAACCATTTT-TAATCATG------------G--AAT-CT-T-----A----GAATA--T--CTA--------------------------G-T-----T--TA------TA---------T--A---ACAGAACA--GATG-GTTAAT------A-TC-CATGATCAA---AT----GCATGAGACACAAACAATTGAAAGGAGATGGT-CATA--ACGATTACATTA-A-ATTGACTCGTTTACACGAT---ACTTTT--CGCTCG---A---A--A-AATACTGGCA-GTACCCTTT----GAC-TTTTT----TTTTTATTTGTT-ATTCGATACGATTTC-G-ATATTCTT--GACATTTTT-T-TAA-----ATAAT--------A-AGAACG-T-----TAATGTTA--GAAAAATCGATCAAG-AATTACAAAAGATACAAC-CTTTAC-----ATATATG----TACGGTAC-TGAAAATATAT------TTGTTC-GCATTAA-T---CTTGCGTTTG-----AAAAAA--CAT-G--GCGGTACCGC-TTAAA---A-TG--TT-T-G-----A-T-TTTATTG-AT----ATG--A--A--T--ATAA-TGCTGAAGTTCTTTAGTTTTATAT----GATATCAACAA--AA----TAAAAATCTGATCATTTGAAGAC-----AAA---AAATAAA----GA------TGGA--------------CTA-CTG-AC-------------A---------TC---TAACT------C-TTGGG-------G-AGTTTT-AAT-----CTT-GGAGTAGAACTTTAAAt
gi|2 : acaattgA------T-----------------CT--TGG-A--------------G---------TA---GAA-C------T-TTAAA-------A-A--CTC-AATGC-TGATT-GGAGTAGAATTTTGAAaactcaatgctgattggagtagaattttgaaaactcaattctaattagagtaggatttcgaaaa
gi|2 : acaattgtgtcgaataagggacaggtgtaaaaaatggacggtactgttaacattagtgttaattaatctgtaactggctacgcaaattaaactctttattgattaaccatttttaatcatggaatcttagaatatctagtttatataacagaacagatggttaatatccatgatcaaatgcatgagacacaaacaattgaaaggagatggtcataacgattacattaaattgactcgtttacacgatacttttcgctcgaaaaatactggcagtaccctttgacttttttttttatttgttattcgatacgatttcgatattcttgacatttttttaaataataagaacgttaatgttagaaaaatcgatcaagaattacaaaagatacaacctttacatatatgtacggtactgaaaatatatttgttcgcattaatcttgcgtttgaaaaaacatggcggtaccgcttaaaatgtttgattttattgatatgaatataatgctgaagttctttagttttatatgatatcaacaaaataaaaatctgatcatttgaagacaaaaaataaagatggactactgacatctaactcttggggagttttaG-A--------------G---------TA---GAA-T------T-TTGAA-------A-A--CTC-AATTC-TAATT-AGAGTAGGATTTCGAAaactcaattctaattagagtaggatttcgaaaa
gi|20 : acaattgtgtcgaataagggacaggtgtaaaaaatggacggtactgttaacattagtgttaattaatctgtaactggctacgcaaattaaactctttattgattaaccatttttaatcatggaatcttagaatatctagtttatataacagaacagatggttaatatccatgatcaaatgcatgagacacaaacaattgaaaggagatggtcataacgattacattaaattgactcgtttacacgatacttttcgctcgaaaaatactggcagtaccctttgacttttttttttatttgttattcgatacgatttcgatattcttgacatttttttaaataataagaacgttaatgttagaaaaatcgatcaagaattacaaaagatacaacctttacatatatgtacggtactgaaaatatatttgttcgcattaatcttgcgtttgaaaaaacatggcggtaccgcttaaaatgtttgattttattgatatgaatataatgctgaagttctttagttttatatgatatcaacaaaataaaaatctgatcatttgaagacaaaaaataaagatggactactgacatctaactcttggggagttttaatcttggagtagaactttaaaaactcaatgctgattgAAGTGATGTAGATTATGGGA---AAT-----------------G-C-GGT-ATTGT---TA------------TT-TT----------GAAAT-GGTAGCTT---GCGGTGC--ATA-TAA----TTACTTTAT-----TTAT-TAACAGATTT-TAATTATGTT---------TA--AGTGAT-T-----T----GAATG--C--TGA----A-aa
gi|21 : accccactggacgggtttattcagaaaaatatgaagactggctacgttatgcagtgtaacacgtag-A----TGCT-TTTATTG-AT----ATG--A--A--T--AGAA-TGTTGAAGTTCTGAAGTTTTATGT----GATATAAACAA--AA----TCAAt
gi|22 : -T-G----TGCT-TCAGTTT-AT-----TG--G--A--T--A------CTGAAGTTTTGTAGTTTTATGCG----ATATAAACAA--AA----TAAAAATCGGATAATCTGAAAAC-----CAA---TATTAAA----GA------TGGA--------------CT--ATC-G--------------A---------TATCTGAC-C------C-TTGAA-------ATG--TTCTAAT-----CTT-AAAGTAGAATTTTCAActacgactttgttaataaaactttattcaatttagcagtattagaatattttgaactgccaaagttatagagagaatcttttgatggtcagtatatatt
gi|23 : tcaataCTTTAT-----TTATATAGCAATTTT-TAA-AATGTT---------TG--TATGTT-T-----T----GAATG--T--TTA----G-A-A-----TATCTT------G-T-----T--TC------TA---------A--G---TCTGAAAA--TATA-ATTAAA------A-TC-CGTTGTCAA---TT----AAATGAGATA--------TGAGGTGAGCCGGT-CATT--TCGaactc
gi|24 : AACCAATTT-TAATAATGTG---------TA--TACATT-T-----A----GAAAG--C--TTC----A-G---------------------------T--TC------T------------------CTTATTA--GATACACTAAATATATGA-TA-TAC-ATCAA---AT----ATATGATATACA--CAGCTGAAATGAGCTAAT-CATT--GTGTTTT------A-ATT--------T--ACAAT---TTTTTT--taaccaagtcatttcgtaaccgttttt
gi|26 : -----GTT-TT--T-C-C--AAAAAT-GGTAGCTG---GCGAAGC--ATATCAA-----TTCGTTAT-----TGGT-TAACCGGTTT-TGATAATACT---------TA--TATGTT-T-----A----GATAG--C--T--------G-A-------------------------------------G---------A--A---ACTGACAT--GATA-GTTAAA------A-TC-AATT-TAAAC--AT----GAAagg
gi|27 : A---GAA-T------T-TTGAG-------A-A--CTC-AATGC-TGCAT-GGAGAAGAGTTTTGat
gi|28 : taaatttgcacataattaaggcaaatgatatagatggactactgaaatctgtctctttggaattatttaatcttggA-------A-A--CTC-AATGC-TGCTT-GGAGCAGAGTTTTGAAt
gi|3 : AGTTATATCGAATATTGGAC---ATTAGT---AA-AGCA-TGA-C-----ACTGC---TGA-TTAA-----GTT-TT--T-T----AGAAAG-GGTAGTTGCTAACG-TGC--ATATCAA----TTTCTTTAT-----TTAT-TAACCGACTT-AAATAGTATT---------CA--TATGTG-T-----C----GAGAG--C--GTA----G-G-A-----T-----------A-T-----T--T--------------------------------A--GGT----------------TC-CA-----AA---AC-------TGAAA---AGATAATTGAACTAAGCCGGT-TATT--ATGACTA------A-ATT--------TACTCAAT---AGTTTT--TATTTA---GCCTATTA-AAACCAGACG-GTA----TT---TG----TTTT----T----ATATAAT-ATTCGAA-----TTT-A-ATATTTCT--GGTATTTCTGTGTCAG-AACATAATGTAGCTC-A-CGAAAGC------------TATAGA-------ATCAAT-AATTACAGAAAATACATC-CTTT-C-----AAA---G----TAGG-CAC-TGAAAATATATTACCGGTATTTA-ATATAAACT---TTTGCGGTTGG----AAAAA-----C-GTAGCAATTTCCCAGTAAAT--A-TT--TT-CAA----TA-T-TGTGTT---T----ATG--AACA--T--A--C-TTCTGAAGTTCTTTCATTTTATGT----GATATAAACAA--TA----TCAGACTAAGTTGATTTCAAGAA-----AAA---TATTAAA----AA------T-----------------aaatgtctgatctatttctctactgatccatcaccagcccaagactttcagtgcttacagcactctgat
gi|3 : ttactatgtattaattatgtgtacA----AA------T-----------------CT--TTG-A--------------G---------TA---CAA-T------T-GTGAA-------A-A--CTC-AGTAG-TACTT-CGAGTAGAATTTCGAAgaactcctgaaatctggcgtttggtgagtttaaatctttgagtacaattgtgaaaactcagtagtacttcgagtagaatttcgaaaaaatataatcccatatctccaagaagccgcctgcagagcagcgctttgatt
gi|33 : ttactatgtattaattatgtgtacagttatatcgaatattggacattagtaaagcatgacactgctgattaagttttttagaaagggtagttgctaacgtgcatatcaatttctttatttattaaccgacttaaatagtattcatatgtgtcgagagcgtaggatatttaggttccaaaactgaaaagataattgaactaagccggttattatgactaaatttactcaatagtttttatttagcctattaaaaccagacggtatttgtttttatataatattcgaatttaatatttctggtatttctgtgtcagaacataatgtagctcacgaaagctatagaatcaataattacagaaaatacatcctttcaaagtaggcactgaaaatatattaccggtatttaatataaacttttgcggttggaaaaacgtagcaatttcccagtaaatattttcaatattgtgtttatgaacatacttctgaagttctttcattttatgtgatataaacaatatcagactaagttgatttcaagaaaaatattaaaaatgaactcctgaaatctggcgtttggtgagtttTAAA------A-TT-CATTATCAA---AT----GAATGAAATACAGACAGTTGAACTGAGCTAGT--ATT--aaaatataatcccatatctccaagaagccgcctgcagagcagcgctttgatt
gi|35 : aAT------AATTTT-GCATTAAAT---TTTGCAGTTCG----CAAAAA--C-CTG--GCGATA-TCT-TTAAttcgctcgaaaaggttaacgatgtcc
gi|36 : T--ATG-A--------------G---------CACATGGA-T------T-T-----------G-A--TTC-AATGC-TGCTT-GGAGTAGAGTTTTGAcg
gi|4 : TGTCGACTAAGGAACA-GAT--GT---AAGA-CA-TGG-T-GGT-TTTGG---CAAACGCA-----GTT-TT--T-G----AGAAAG-GGTAGCTG---GTTGGGA--ATCTTAG----CGTCGTTAT-----TTAT-TAA--------------TGTT---------TA--TATGTT-T-----A----GAAAT--A--TTA----C-A-A-----T-------------------T--TC------TA---------GTTA---A-TGAAAA--TATA-ATTAAA------A-CT-CATTATTCA---AT----GAATTAGATACAGACAGTTAAACTGACCTGGT-CATT--GCGATTATATTTCATATT--------TACACAAT---ATCTAT--CGCTCG-------A--A-AAGCATGCTG-GTACC--TT---TAAT-TTTTT----T----AATTATG-ATTCGAT-----TTT-A--TATGTTT--TATATTTCTGCGTATGAATCATAGTGTTGTTCTATGGAAGAC-------AAAGTTATTGAAAA-TCAATCAAG-AATTTCAGGAGTTACAAC-CTTT-C-----ACT---A----TACG-AAC-TGAAAATATATAG----TATTTC-ACATTGAAT---TTTACGGTTGG----AAAAAAACC-T-G--GCAGTGCCCC-TTAAGTATA-TTATTT-T-AATTTTGAT-TTTATTT-AT----ATA--AGTA--T--A--A-TGCTGAAATTATGTAGTTTTATGTG---T-TATTTACAT--AA----TCAAACTTGGATAATTTAAACACAAAAAAAAGACTACTGAAATCTGACTT---T-----------------TT--GTG-AAATTTAATCTTGGTG---------TA---GAA-G------T-TTTAA-------A-A--CTC-AATGC-TGCTTAGGAGT
gi|5 : ttgtaacacatattttcactgtgtaaaagggagtactcagttt-GAT--GT---AA-A-----GG-C-GTA-ACTGA---TA----------------T--T-T-T--AGAAAC-GGTAGATG---GCGATGC--ATATTAA----CTGGTTT---------------------T-TAATATTGAG---------TA--TATGTT-T-----A----GAAAG--C--TGA----A-G-A-----TATCTT------G-T-----T--TT------CG---------A--A---ACTGAAAA--GATA------------------CATTATCAA---AT----GAATGAGATACAGACATTTAAAGTGAGCTGGTACATT--TCGCTCA------A-Atg
gi|5 : tttaaaagaaatataaatttgatatgcgagcataatgcactatatgcatacaatggccagtctacgtaatttgcctggcgctgaataccagtccaagttgtgctgggcgggtttattctgaaaaatagtGCTCAA-AAAAAACT---------GTTATTGAAAA-TCGA---AC-AATTATAGAAGCTACA-TTCTTT-C-----GGA---T----TACG-TCC-TTAAA-TAAAT------TATTTT-GCATTAAAT---TTTGTTGTTGG----AAAAAC--C-C-G--GCGGTACGCC-TTAAC---A-CT--TG-T-A----TACA-TTAATTT-AT----ATA--AATA--T--A--A-TGCTGACGTTCTGTAGCTGTATGTG---T-TATAAACAC--AA----TCAAATTCGAATAATTTGAGAAC-----AAaaaaactgttattgaaaatcgaacaattatagaagctacattctttcggattacgtccttaaataaattattttgcattaaattttgttgttggaaaaacccggcggtacgccttaacacttgtatacattaatttatataaatataatgctgacgttctgtagctgtatgtgttataaacacaatcaaattcgaataatttgagaacaattctaaattatggagatttaagaaaaaaaaacaaaaactaccgaaatctgattcttgggaatttttaatcttggagcagaattttaaaaactcgatgctgcttagagtagagttttaaagaatatctgacctacttct
gi|5 : tttaaaagaaatataaatttgatatgcgagcataatgcactatatgcatacaatggccagtctacgtaatttgcctggcgctgaataccagtccaagttgtgctgggcgggtttattctgaaaaatagtgatgtaaaggcgtaactgatattttagaaacggtagatggcgatgcatattaactggtttttaatattgagtatatgtttagaaagctgaagatatcttgttttcgaaactgaaaagatacattatcaaatgaatgagatacagacatttaaagtgagctggtacatttcG--A--A--C--A--A-TTCTAAA-TTATGGAGATTTAAGAA---AAAA-AAACAA--AAACTACCGAAATCTGATTCTTGGGA----------A---TTTTTAA------------T-----------------CT--TGG-A--------------G---------CA---GAA-T------T-TTAAA-------A-A--CTC-GATGC-TGCTT-AGAGTAGAGTTTTAAAttctaaattatggagatttaagaaaaaaaaacaaaaactaccgaaatctgattcttgggaatttttaatcttggagcagaattttaaaaactcgatgctgcttagagtagagttttaaagaatatctgacctacttct
gi|6 : tttaaaagaaatataaatttgatatgcgagcataatgcactatatgcatacaatggccagtctacgtaatttgcctggcgctgaataccagtccaagttgtgctgggcgggtttattctgaaaaatagtgatgtaaaggcgtaactgatattttagaaacggtagatggcgatgcatattaactggtttttaatattgagtatatgtttagaaagctgaagatatcttgttttcgaaactgaaaagatacattatcaaatgaatgagatacagacatttaaagtgagctggtacatttcgctcaaaaaaaactgttattgaaaatcgaacaattatagaagctacattctttcggattacgtccttaaataaattattttgcattaaattttgttgttggaaaaacccggcggtacgccttaacacttgtatacattaatttatataaatataatgctgacgttctgtagctgtatgtgttataaacacaatcaaattcgaataatttgaAAGTGATGCAAAGTAAGCGGCT-GGT--GT---AA-A-TA-TGA-C-AAT-ACTGT---TAAATTTA-----GTT-TT--T-T-C--TGAAAG-GATAGCTG----CAACTC--ATATTTA----TTTCTTTAT-----TTAT-TTACCAATTT-TAATAACGTT---------AA--TATATT-T-----A----GAAAA--A--TCA----A-G-A-----T-----------G-T-----T--TC------CG---------A--A---ACTGAAAA--GATA-ATTAAG------A-TC-CATTATCAA---GT----GAATGAGGTACAGGCAGTTAAACTGAGCTGGT-CATT--GCAATTA------A-ATT--------TACACAAT---ATTTTT--TACTTG---G---A--A-AAACCTGACG-GTACCCTTT---TAAC-TTTAC----C----ATTTATT-ATTTGAT-----TTT-A-AAATTGCT--TATGTTTCTATGTAAGAAACATAATGGAGTTCTG-GTAAAGCTTAGTATAAAGTTATTGAAAA-TCGACCAAG-AGTAATAGAAGATACA-C-CTTT-C-----AAA---A----TATG-AAC-TGAAAATGTAT------CATTTT-GCATTAAAT---GTTTCCGTTGG----GAAAAA--C-A-G--TTGGTACCCC-TTAAA---A-CC--TT-T-A----CACT-TTTATTT-AT----ATG--A--A--T--A--A-TAATAAAGTTCTGTGGTTTTATGTGTCAGATATAAACAA--AA----TCAAAATCTGATAATTTGAAAAC-----AAA---TAATAAA----GA------T-----------------CT--GTG-A--------------G---------TA---AAA-T------T-ATGAA-------A-A--CTC-AATTC-TGATT-GG---AGAATTTTGAAgaatatctgacctacttct
gi|7 : T--T-T-G--AGAAAAAGGTAGCTG---GCAGTGC--ATATATT----CTTCTTTAT-----ACAT-TAACCGATTT-TAATAATTTT---------TA--TATGTTGT-----ATGTTGAAAGAAC--TTA----AAG-A-----TTAAAATATTTTG-T-----T--TT------CA---------A--A---ACGGAAAA--GAAA-ATTAAG------A-TAATATTATTAAGGAATTTAGGAATGAGATACATACAGTTAAG-------------TT--GCGATTA------A-AAT--------TATACACT---ACGTTT--TGCTT--------A--ATAAACCTTGCG-GTACT-TTT---TAAC-TTTCTTTCTC----ATTTATA-ATTGGAT-----ATT-A-ATATAATT--TATATTTCTATGTAAGGTATATAACGTAGTTCCA-GGAAAGC------TAAAATTATTAGAAA-TCGTTCAAC-AATTACGGAA-ATAAA-C-TTTT-C-----AAA---A----TACT-CCC-TTAAAA---GT------T-TTTC--CATTAAA----TTTGCGATTGG----AAAAGT--C-T-G--GCGGTACCCA-TTTAA---T-TA--TT-T------TAGC-TTTATTT-AT----ATG--A--C--T--ATTA-TGCTCAGGTTCCATAGTATAATA-G---AATGTTAACAATTAA----TGACAAAC-GATAA
gi|8 : ta-T-T--AGAAAT-GGTA-CTG---GTTGTGA--ATAT-AA----TTTCTTT-T-----TTGT-TAACAGATTC-GAACAATGCT---------TA--TATGAT-T-----A----GAA-G--C--TTA----A-G-A-----T-----------A-T-----T--TTATTTTTTG---------A--A---ACTGAAAA--GATA-ATAAAA------A-TA-AATCATCAT---AT----GAGTGAGATACTGACAATTGAACTGAGTTGGT-C-------GATCA------A-ATT-------------------A-------CGCTTG---A---A--A-AAAT-TGACG-GTACCCTTT----AAC-TTT-------------------ATTTGAT-----TTT-A-ATATTCTT--TATATAACTATGTAAGAAACATAATTTAGTTCT--GAAAAGCT-----T-AAGTCATTGAAAA-CCAATAAAA-AATTATTGAAGATACATC-CTTT-C-----AAA---A----TATG-TAC-TGAAAATATAT------GATTTC-ACAT-----------------------AAAATA--C-CTA--GCAGTA-CCC-TTAAA---A-TA--TT-T-A----TACT-TTCATTT-AT----ATG--A--ATGT--A--A-TGCTGAAGTTTTGTACTTTTATG-A---GATAT-GATAT--AA----TTATAACTGAATAA-TTGAAGAC-----AAA---TAATAAA----GA------TGGA--------------CTA-CTG-A------------------------------AA-TCTGACAC-TTGGA-------A-ATTTTT-AATGCAT------GAGTAGAATTTTGAAgatactactgatactactattgatactactgaaatctgactctcaaatttcaatattgaagtatagttatggaaac
gi|9 : -----GTT-TA--T-T-C--AGAAAA---TATGTA---GGGGTTT--ATATTAA----CATCTTTGTCAATTTTGT-TAACCGATTT-TAATAATGTT---------CA--TATGTT-T-----A----GAAAG--C--TGA----A-T-ATATCTT-----------G-T-----T--TT------CG---------A--A---ACTGAAAA--GATA-ATTAAA------AGTC-CATTATCAA---AT----AAATAAGATACACACATTTaattcaattcttcttggaacagagttttgaaaaat
gi|9 : ----C----ATTTATT-ATTCAAT-----TTTGA-ACATTCTT--TATATGTCTA-GTTC-AAACATAATGTAGTTCTA-GGAAAGCT------AAAGTTATTGAAAA-TAGATCAAG-ACTGACAGAAGGTACA-C-CTattattcaattttgaacattctttatatgtctagttcaaacataatgtagttctaggaaagctaaagttattgaaaatagatcaagactgacagaaggtacacctgaagtctttatattttaatttatatgaatataatgctgaagttttgtagttttatgtgatataacaaaatcaaattcagatgattggaagacaaataataaagttggactactgaaatttgaatctagggaattttcaattgttgagtagaattttgaaaactcgatgcaacttggagaagatttttgaaaaatgtcttaatctacttttccgtcaccatcccaagacttttagcgctcacagtgctttgattaaatattggacaaattagtaaaaatgc
gi|9 : gtttattcagaaaatatgtaggggtttatattaacatctttgtcaattttgttaaccgattttaataatgttcatatgtttagaaagctgaatatatcttgttttcgaaactgaaaagataattaaaagtccattatcaaataaataagatacacaGGTACACC-T-GAA---G-TC--TT-T-A----TATT-TTAATTT-AT----ATG--A--A--T--ATAA-TGCTGAAGTTTTGTAGTTTTATGT----GATAT-AACAA--AA----TCAAATTCAGATGATTGGAAGAC-----AAA---TAATAAA----G--------------------------T--TGG-A--------------C---------TACT-GAA-A------T-TTGAATCTAGGGA-ATTTTC-AAT---TGTT---GAGTAGAATTTTGAAgaagtctttatattttaatttatatgaatataatgctgaagttttgtagttttatgtgatataacaaaatcaaattcagatgattggaagacaaataataaagttggactactgaaatttgaatctagggaattttcaattgttgagtagaattttgaaaactcgatgcaacttggagaagatttttgaaaaatgtcttaatctacttttccgtcaccatcccaagacttttagcgctcacagtgctttgattaaatattggacaaattagtaaaaatgc
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TGATGTTGCGTAACTAAACTTCATTTGACTGGTTCATTTTACTTCCTGTTCGAAAAAGTACGAATACTGTCAACTGTATGCAGGCTATTGTGTTAGTGATGCAAAGTAAGGAAAATGGGTAAAACATATA
Unaligned ( gi|29 ): TCCGGTCATTTTGTAACCAAGTCATTTCGTAACTGCGTTTTTGGTCATTTCGTAACAGGTTTGAACTGTTGGATAATGTCGTAACCACTTTTTAGGTC
Unaligned ( gi|30 ): TCCGGTCATTTCGTAACCAAGTCATTTCGTAACTGTTTTTTTTTTGGTCGTTTCGTAACCATTTTTTCAGTCATTTCGTAACCACTT
Unaligned ( gi|31 ): TCTGGTCATTTCGTAACCAAGTCATTTTGTAACTGTTTTTTTTGGTCGTTTGTAACTATTTTTTCGGTCATTTCGTAACCAC
Unaligned ( gi|32 ): CTGTCATTTCGTAACCAAGTCATTTCGTAACCAAGTCTTTTCGTAACCCGTTTAAAATGTTGGTCAATCCGTAACCATATTT
Unaligned ( gi|34 ): TAACCAAGTCATTTCGTAACCGGGTTTTTTTTTCGGTCGTTTCGTAACCATTTTTTCGTTTTTTTACGAAATGACCG
Unaligned ( gi|37 ): GCACAAACACCACTGGACTGGTTCACTCCACTTCCTGT
Unaligned ( gi|38 ): TGAAGACAAATAATAAAGATGGACTACTGAA
Alignments
lowQualScore : 1111 1111 111111111111 1111 66666666666666666666666666666666666666666666666666666666 111111 11111111 222222222 11111111 222222222 111 111111 111111 111111111 11 11 222222 66666666666666666666666666666666666666666666666666666666666666 11
lowQualScore : 3 0 8888 55 666 3 4444 3 3 3 666 888888888888 3 33 2 4444 66 444 33 66666 1 66666 2 0 2 999999999 66 2 9999999999 33 33 55555555555555555555555555555555555555555555555555555555 33 444 33 2 666666 2 2 555 4444 3 2 33 222222 2 22222222 3 444 33 0 444444444 33 2 0 0 2 88 11111111 777777777 2 3 66666 5 2 1 33 1 444 2 333333333 00 44 2 1 666 2 66666 88888888 0 2 2 000000 44 1 0 444 2 5555 333333 33 2 111111111 2 999999 444 2 6666 33 11 33 33 77 2 0 444444 2 33 5555 3 2 77777 555 0 6666 00000000000000000000000000000000000000000000000000000000000000 2 777777 2 7777777 2 22 2 5 2 44
lowQualScore : . . .... .. ... . .... . . . ... ............ . .. . .... .. ... .. ..... . ..... . . . ......... .. . .......... .. .. ........................................................ .. ... .. . ...... . . ... .... . . .. ...... . ........ . ... .. . ......... .. . . . . .. ........ ......... . . ..... . . . .. . ... . ......... .. .. . . ... . ..... ........ . . . ...... .. . . ... . .... ...... .. . ......... . ...... ... . .... .. .. .. .. .. . . ...... . .. .... . . ..... ... . .... .............................................................. . ...... . ....... . .. . . . ..
lowQualScore : 0 1 8888 55 444 6 1111 6 6 6 444 333333333333 1 99 7 5555 33 777 77 00000 1 22222 5 7 4 444444444 55 4 6666666666 11 11 22222222222222222222222222222222222222222222222222222222 22 111 11 2 111111 1 1 888 5555 9 2 11 666666 4 55555555 4 444 44 9 999999999 77 7 9 3 7 55 11111111 444444444 5 4 22222 0 5 8 44 2 222 5 888888888 66 22 5 1 333 7 77777 77777777 2 7 7 666666 88 1 1 444 4 3333 888888 77 5 555555555 9 666666 222 9 1111 77 00 77 77 33 7 2 222222 6 77 7777 7 4 11111 444 8 1111 22222222222222222222222222222222222222222222222222222222222222 5 222222 5 6666666 4 99 4 6 4 00
consensus : AAGTGATGCCGAATAAGGGACC-GAT--GT---AA-A-CA-TGG-C-GGT-ACTGT---TAANTTTA-----GTT-TT--T-T-C--AGAAAN-GGTAGCTG---GCGGTGC--ATATTAA----CTTCTTTAT-----TTAT-TAACCGATTT-TAATAATGTT---------TA--TATGTT-T-----A----GAAAG--C--TTA----A-G-A-----T-----------G-T-----T--TC------CG---------A--A---ACTGAAAA--GATA-ATTAAA------A-TC-CATTATCAA---AT----GAATGAGATACAGACAGTTGAANTGAGCTGGT-CATT--GCGATTA------A-ATT--------TACACAAT---ATTTTT--CGCTCG---G---A--A-AAACCTGGCG-GTACCCTTT---TAAC-TTTTT----C----ATTTATT-ATTCGAT-----TTT-A-ATATTCTT--TATATTTCTATGTAAGAAACATAATGTAGTTCTA-GGAAAGCT-----TAAAGTTATTGAAAA-TCGATCAAG-AATTACAGAAGATACA-C-CTTT-C-----AAA---A----TACG-TAC-TGAAAATATAT------TATTTC-GCATTAAAT---TTTGCGGTTGG----AAAAAA--C-C-G--GCGGTACCCC-TTAAA---A-TC--TT-T-A----TACT-TTTATTT-AT----ATG--A--A--T--A--A-TGCTGAAGTTCTGTAGTTTTATGTG---GATATAAACAA--AA----TCAAAATCGGATAATTTGAAGAC-----AAA---TAATAAA----GA------T-----------------CT--NTG-A--------------G---------TA---GAA-T------T-TTGAA-------A-A--CTC-AATGC-TGCTT-GGAGTAGAGTTTTGAA
Reference ( family-870 ) : AAGTGATGCCGAATAAGGGACC-GAT--GT---AA-A-CA-TGG-C-GGT-ACTGT---TAANTTTA-----GTT-TT--T-T-C--AGAAAN-GGTAGCTG---GCGGTGC--ATATTAA----CTTCTTTAT-----TTAT-TAACCGATTT-TAATAATGTT---------TA--TATGTT-T-----A----GAAAG--C--TTA----A-G-A-----T-----------G-T-----T--TC------CG---------A--A---ACTGAAAA--GATA-ATTAAA------A-TC-CATTATCAA---AT----GAATGAGATACAGACAGTTGAANTGAGCTGGT-CATT--GCGATTA------A-ATT--------TACACAAT---ATTTTT--CGCTCG---G---A--A-AAACCTGGCG-GTACCCTTT---TAAC-TTTTT----C----ATTTATT-ATTCGAT-----TTT-A-ATATTCTT--TATATTTCTATGTAAGAAACATAATGTAGTTCTA-GGAAAGCT-----TAAAGTTATTGAAAA-TCGATCAAG-AATTACAGAAGATACA-C-CTTT-C-----AAA---A----TACG-TAC-TGAAAATATAT------TATTTC-GCATTAAAT---TTTGCGGTTGG----AAAAAA--C-C-G--GCGGTACCCC-TTAAA---A-TC--TT-T-A----TACT-TTTATTT-AT----ATG--A--A--T--A--A-TGCTGAAGTTCTGTAGTTTTATGTG---GATATAAACAA--AA----TCAAAATCGGATAATTTGAAGAC-----AAA---TAATAAA----GA------T-----------------CT--NTG-A--------------G---------TA---GAA-T------T-TTGAA-------A-A--CTC-AATGC-TGCTT-GGAGTAGAGTTTTGAA
gi|1 : TGCTGAATAGGGGATC-GTT--GT---AA-AACA-TGG-C-ACT-ACTGT---TAACTTTT-----TTT-TT--T-TTC--TGAAAG-AGTAGCTG---CTGGTGC--ATATTAA----CTATTTTAT-----TTAT-CAACTGATTT-TAATATTGTT---------TA--TAGGTT-T-----A----GAAAG--C--TTAGAACA-T-A-----T-----------ACT-----T--TT------CA---------A--C---ACTGAAAA--AATA-ATTAAA------A-TC-CATTTTTAA---AT----GGATAAGATAAAGACAGTTAAACAGAGCTGGT-TATT--GTGATTA------A-ATT--------TACACAA----ATTTTT--A--TCA-------A--A-AAACCTGGCG-CTACCTTTTAAATACC-GTTTT----C----ATTTATT-ATTTAAT-----TTT-A-ATATTGTC--TATATTTCTATGTAAGAAACATAATGTTATTCTG-GGAAAGCT-----TAA-GTTACTGAAAA-GTGATCAAG-AATTACAGAAGATACA-C-CTTT-T-----AAA---A----TATG-TAC-TGAAAATAAAT------TATTTC-CAATTAAAT---TTTGCAGATGG----AAAAAA--C-T-G--GGGGTACCCT-TTAA----------TT-T------TCCA-TTTATT
gi|1 : taagtttaacataaattaggaaattacttggtaatgcgcagctaaaatgcgtcatataatggtcagtgcatattcactgtgtaaaagtgatgtatatatacaattgT---AA-A-CA-GAG-CTGGTTATTGTGATTAAATTTACACAAATT-TT--TAT-C--AAAAA-----ACCTG---GCGCTAC--CTTTTAAATACCGTTTTCAT-----TTAT-TATTTAATTT-TAATATTGTC---------TA--TATTTC-TATGTAA----GAAA---C--ATA----A---------T-----------G-T-----TATTC------TGGGAAAGCTTA--AGTTACTGAAAA--G-TG-ATCAAG------A-----ATTA-CAG---A----------AGATACAC-CTTTTAAAATA---TG---TACT--GAAAATA------A-ATTAT------TTC-CAATTAAATTTTG--CAGATG---G---A--A-AAAACTGGGG-GTACCCTTT----AA--TTTTC----C----ATTTATT-GTTCGGT-----TTT-A-ATATTATT--TACATTTCTATGTAAGAAACATAATAGAGTTTTA-AGAAAGC------TAAAGTTATTGAAGA-GTGATCAAG-AACAACAGAAGATACAGC-CTTT-C-----ATA---A----TATG-TGC-TGAAAATATAT------TATTTCAAAATTAAAT---TTTGAAA-TGG----AAAAAgttcggttttaatattatttacatttctatgtaagaaacataatagagttttaagaaagctaaagttattgaagagtgatcaagaacaacagaagatacagcctttcataatatgtgctgaaaatatattatttcaaaattaaattttgaaatggaaaaattttgtttttcagattttaacttacactt
gi|10 : taagtttaacataaattaggaaattacttggtaatgcgcagctaaaatgcgtcatataatggtcagtgcatattcactgtgtaaaagtgatgtatatatacaattgtgctgaataggggatcgttgtaaaacatggcactactgttaacttttttttttttctgaaagagtagctgctggtgcatattaactattttatttatcaactgattttaatattgtttataggtttagaaagcttagaacatatacttttcaacactgaaaaaataattaaaatccatttttaaatggataagataaagacagt--GATA-ATTAAA------G-AT-CATTATGAA---AT----GAGTGAGATGCTGACAGTTGAAGTGAGCAGGT-CATT--GCAGTTA------A-ATT--------TTTACAAT---ATTTTTTTCATTTG---G---A--A-AAACTTGGCA-GTATCCTTT----AAC-TTTTT----A----GTTTATT-ATTTGAT-----TTT-A-GTAATCTT--TATATTTCTATGTAAGAAACATTATGTAGTTCTA-GAAAAG----------------TGAAA----GCTTAAG-AATTATGGAAGATGCAGC-TTTT-C-----AAA---AA---TTTG-TCT-TGAAAACATGT------T----T-GCAATAAAT---TTTGTTGTTGG----AAAAAA--C-A-G--GCCGTACAAC-TTAAA---AGTC--TT-C-T----TAAA-TTTATTA-AT----ATA--A--A--TGAA--A-TGCTTA-GTTCTGTAGTTTTATGTG----ATATAAACAA--AA----TTAAAATCAGATAATTTGAAGAC-----AAA---TAATATA----GA------ttttgtttttcagattttaacttacactt
gi|11 : AAG--C--TTGG---A-GTA-----TCTA--------G-T-----T--CC------CA---------A--A---ACTGAAA---GATA-ATTAAA------A-TC-TATTGTCAA---AT----GAACG------AGACAGT----------TGGT-CATTTGGC-ATCA------A-ATT--------TACACAAT---ATCTTT---------------------AACCTGGTG-GTACCATTT---T-AC-TTTTT----C----ATTTATT-ATT--A----------A-ATATTCTT--TATA-TTCTATGTAAGAAACATTAT---GTTCTA-GGAAAGCT-----T-AATTTATTGAAAA-TTTATC--------ATAGA-----------TTT-C-----AAA---ATATGTATG-TAC-TGAAAATATAT------TATTTT-GC------------TGTGGT------------A--C-----------ATCC-----AA---A-TC--TTAT-A----GACTATTTGTTTGATTTTAATT--T--A--T--A--A--GATAAAGTTCTGTAGGTTCATGT----GATATATACTA--AA----TCAAAATCAGATAATATGAGTAC-----AAA---TTATAAA----GA------TGGACCACTGAAATTGGACT--TTT-A--------------A---------CAT--GAA-T------T-TTACA-------A-G--GTC-AATGC-TGCTT-CGAGTAGAGTctgactacttaaatctgactcttttcaaaattttattcttttatgtaaaattttaaaaacgtgatactgctagaagtaaaaattttaagatttctaacctacttctccgccaagccatctgca
gi|12 : catgatcaattatttctttttaaaatcattAAAGGACCAGTT--TT---AA-A-CC-TGG-T-GGT-AGTGT---TAAGATTA-----GGT-AT--A-T-A--AGAAAG-AGTAGTTG---GTGGTTCTTATACTTA----CTTATTTAT-----TCAT-TAACCGATTTATAA-AATGTT---------TA--TAATTT-T-----A----AAAAG--C--TTC----A-TTA-----TCTT--------G-T-----T--TC------TG---------A--A---ACTGAAAA--TACA-TTTAGA------A-TC-CATTATCAA---AT----GAAAGAGATACAGACAGTTGAAATGAGTTGGT-GATA--GCGATTA------A-ATT--------TACAAAAT---ATTTTT--CGCT-G---G---A--A-AAACTTGTCA-GTAGC-TTT---TAAC-TTTTT----C----ACTTATT-ATTGAAA-----TTC-A-ATGTATTC--TGTATTT-------------ATA------TTTT---------T-----TGAA-TAATTGAAA--TCGATCAAG-AATTTAAGAAG--------------------AA---A----TACA-TAC-TGAAAATATAT------TATTTT-GCATTAAAT---TTTGCTGATGA----AAAGAC--C-T-G--GCGATACTCC-TTAAA---
gi|13 : gAAGTGATGCAGCATAGGGCAAC--AT--GT---AA-AACA-TGG-C-GAT-ACTGT---TATATATA------TA-TT--T-T-T--AGAAAT-GGTTACTG---GCAGTGC--ATATTGA----CTTCTTTAA-----TTGT-TAACCGATTT-TAATAATGTTAACTGATTTTAATCATGTT-TTA---A----GAAAG--C--TTA----G-G-A-----TATTTT------G-T-----T--TT------AG---------A--A---ACTGAAAA--GATA-ATTAAA--------TC-CATTATCAA---AT----GAATTAGATATAGACATTTAAACTGAGCTGGT-CATT--GCAATTA------A-A---------------------GTTTTT--CCCT-----G---A--A-AAAAATGATG-GTACCCTTT---TA---TTTTT----
gi|14 : gttgcaaccaacctccactggtctggttcactccacttcctgttctgaacaatacttagacttactgtatgcaggttattgtctaacaagttcTTT----C----ATTTATT-ATTCAAT-----TTT-AGATATTCTT--TATGTGTCTATGTTCGAAACATATTGTAATTCTA-GGAAAG-G-----TAAATATATTGTAAA-TCGAACAAG-AATTATAAATGACA------TTT-C-----GAA---A----CGTG-CAC-TG-GAATAAAT------GATTTG-GCATT---TCTGTTTACGGTTGC----AAAAAATCT-C-G--GCTGTAC-------------------T-T-A----TACT-TTGATTT-AT----ATA--A--A--T--AT-ATTGCCTACGTTCTGAAGTTTCATGT----GATATAAACAA--AA----TCAAATTCGGACAATTTGAACAC-----AAA---TAATAAA----GA------TTGA--------------CT--ATG-A--------------AATCATGGATTA---GAA-T------T-T---A-------A-A--CTC-AATGC-TGCTT-GGAGTAGAGTTTTGt
gi|15 : GATTA------A-ATT--------T-CACTAT---GTTTTT--CGCT-A---G---A--A-TAACCTGGCATATAA----T---TAAC-GTTTT----C----ATTTTTTTATTAGAA-----TTT-A-GTTTTTTTGTTATGTTTGTATGTAAGTAACATAGCGTAGTTTTA-GGAAAGC------TAAAGGTGTTTAAAT-TCGATCATGCAATTACGGAAGATACA-A-TCTT-CAGTCAAAA---A----TATG-TACGTGAAAATATAC------TATTTC-GCATCAAAT---TTT---GTTGGAGGAAAAAAA--C-T-G--GCATTACCAT-TTATA---A-TC--T
gi|16 : AGCTGAGCCGGT-CATT--GCGATTA------C-ATT--------TACACAAC---GTTTTT--CGGTCG---A---A--A-AAA-TTGATG-GTACCCATT---T----TTTTT----T----ATTTATT-ATTCTAC-----CTTAA-ATATTCTT--TATATATCTACGTAAGG-------------TCAA-GTAAAGC------TAAAGTGATTGACAC-GCTAT------ATT---------------CTTT-C-----GAA---G----TACG-TAC-TGAAAGTAGAT------TATTT--G-ATT--AT---TT---GGTTGG----AAAAAA--C-CTA--GCAGTAACAC-TTAAA---A-CC--TT-T-A----TACG-TTTATTT-AT----ATGTCT--A--T--A--A-TGCTGATGTTaaatatatggtcaataattctgtgaacagtttatattgtattcataattatctaaaaatgtaaataa
gi|17 : TTCTTT-------TCAT-TA-----TCT-TAATAATGTT---------TAAATATGTT-T-----A----AAAA---CAATTA----G-A-G-----T-----------A-TCGAGAT--TC------TA---------A--A---ACTGAAAAAAGACA-ATTAAA------A-CC-CGTTATCAA---AT----GAACTAGATACAGACTGTTGAAATGAGCTGGG-CAAT--GCGATCA------A-ATT--------TACACAAT---AATTTT--CGCT-GAAAA---A--A-AAACTTATCA-GTACCA-TT---TAACTTTTTT----C----ATTTATT-ATTGGAT-----TTT---------TT--TTTATTTATATGTAAg
gi|18 : tTTTTATTT--------TAAACAC--AA----TCCAAATCAGATGATTTTAAGAC-----AAA---TAATAAA----GAATAACTT-----------------CTCAGTGAA--------------A---------TC---GGA-T------TCTTGGC-------A-ATTTTT-AAT-----CTC-TAAGTAGAATTTTGAattccatacgggtgtaga
gi|18 : ataaatgtgatgttaagtgcaaaatatggcggtatttttAAATCGGATTCTT----GGC-----AAT---TTTTA-------A------T-----------------CT--CTA-A--------------G---------TA---GAA-T------T-TTGAG-------A-A--CTC-AATGC-TGCTT-TGAGTTGAGTTTGGAAgaactcaatgctgctttgagttgagtttggaaaaatatttaacctacttctcctccaagccatctgca
gi|19 : ataaatgtgatgttaagtgcaaaatatggcggtatttttttttattttaaacacaatccaaatcagatgattttaagacaaataataaagaataacttctcagtgAATAAGGAA---AAT--ATTTAAA-A-TA-AAG-C-AGC-ACTGT---TACTTTTA-----GTTGTT--T-T-CTTAGAAAT-GACAGTTG---GCGGTGC--CTATTTA----TTTaaatatttaacctacttctcctccaagccatctgca
gi|2 : tttgacgtcgtgtaatcactggactggttcactcttatttcctgtttggaaaattacgtagactggcttatgtaagcagtttattgtgtaaaacgtaatcgtaattgacagtatTGTCGAATAAGGGACA-GGT--GT---AA-A-AAATGGAC-GGT-ACTGT---TAACATTA-----GTG-TTAAT-T------AATC-TGTAACTG---GCTACGC--AAATTAA----ACTCTTTAT-----TGAT-TAACCATTTT-TAATCATG------------G--AAT-CT-T-----A----GAATA--T--CTA--------------------------G-T-----T--TA------TA---------T--A---ACAGAACA--GATG-GTTAAT------A-TC-CATGATCAA---AT----GCATGAGACACAAACAATTGAAAGGAGATGGT-CATA--ACGATTACATTA-A-ATTGACTCGTTTACACGAT---ACTTTT--CGCTCG---A---A--A-AATACTGGCA-GTACCCTTT----GAC-TTTTT----TTTTTATTTGTT-ATTCGATACGATTTC-G-ATATTCTT--GACATTTTT-T-TAA-----ATAAT--------A-AGAACG-T-----TAATGTTA--GAAAAATCGATCAAG-AATTACAAAAGATACAAC-CTTTAC-----ATATATG----TACGGTAC-TGAAAATATAT------TTGTTC-GCATTAA-T---CTTGCGTTTG-----AAAAAA--CAT-G--GCGGTACCGC-TTAAA---A-TG--TT-T-G-----A-T-TTTATTG-AT----ATG--A--A--T--ATAA-TGCTGAAGTTCTTTAGTTTTATAT----GATATCAACAA--AA----TAAAAATCTGATCATTTGAAGAC-----AAA---AAATAAA----GA------TGGA--------------CTA-CTG-AC-------------A---------TC---TAACT------C-TTGGG-------G-AGTTTT-AAT-----CTT-GGAGTAGAACTTTAAAt
gi|2 : acaattgA------T-----------------CT--TGG-A--------------G---------TA---GAA-C------T-TTAAA-------A-A--CTC-AATGC-TGATT-GGAGTAGAATTTTGAAaactcaatgctgattggagtagaattttgaaaactcaattctaattagagtaggatttcgaaaa
gi|2 : acaattgtgtcgaataagggacaggtgtaaaaaatggacggtactgttaacattagtgttaattaatctgtaactggctacgcaaattaaactctttattgattaaccatttttaatcatggaatcttagaatatctagtttatataacagaacagatggttaatatccatgatcaaatgcatgagacacaaacaattgaaaggagatggtcataacgattacattaaattgactcgtttacacgatacttttcgctcgaaaaatactggcagtaccctttgacttttttttttatttgttattcgatacgatttcgatattcttgacatttttttaaataataagaacgttaatgttagaaaaatcgatcaagaattacaaaagatacaacctttacatatatgtacggtactgaaaatatatttgttcgcattaatcttgcgtttgaaaaaacatggcggtaccgcttaaaatgtttgattttattgatatgaatataatgctgaagttctttagttttatatgatatcaacaaaataaaaatctgatcatttgaagacaaaaaataaagatggactactgacatctaactcttggggagttttaG-A--------------G---------TA---GAA-T------T-TTGAA-------A-A--CTC-AATTC-TAATT-AGAGTAGGATTTCGAAaactcaattctaattagagtaggatttcgaaaa
gi|20 : acaattgtgtcgaataagggacaggtgtaaaaaatggacggtactgttaacattagtgttaattaatctgtaactggctacgcaaattaaactctttattgattaaccatttttaatcatggaatcttagaatatctagtttatataacagaacagatggttaatatccatgatcaaatgcatgagacacaaacaattgaaaggagatggtcataacgattacattaaattgactcgtttacacgatacttttcgctcgaaaaatactggcagtaccctttgacttttttttttatttgttattcgatacgatttcgatattcttgacatttttttaaataataagaacgttaatgttagaaaaatcgatcaagaattacaaaagatacaacctttacatatatgtacggtactgaaaatatatttgttcgcattaatcttgcgtttgaaaaaacatggcggtaccgcttaaaatgtttgattttattgatatgaatataatgctgaagttctttagttttatatgatatcaacaaaataaaaatctgatcatttgaagacaaaaaataaagatggactactgacatctaactcttggggagttttaatcttggagtagaactttaaaaactcaatgctgattgAAGTGATGTAGATTATGGGA---AAT-----------------G-C-GGT-ATTGT---TA------------TT-TT----------GAAAT-GGTAGCTT---GCGGTGC--ATA-TAA----TTACTTTAT-----TTAT-TAACAGATTT-TAATTATGTT---------TA--AGTGAT-T-----T----GAATG--C--TGA----A-aa
gi|21 : accccactggacgggtttattcagaaaaatatgaagactggctacgttatgcagtgtaacacgtag-A----TGCT-TTTATTG-AT----ATG--A--A--T--AGAA-TGTTGAAGTTCTGAAGTTTTATGT----GATATAAACAA--AA----TCAAt
gi|22 : -T-G----TGCT-TCAGTTT-AT-----TG--G--A--T--A------CTGAAGTTTTGTAGTTTTATGCG----ATATAAACAA--AA----TAAAAATCGGATAATCTGAAAAC-----CAA---TATTAAA----GA------TGGA--------------CT--ATC-G--------------A---------TATCTGAC-C------C-TTGAA-------ATG--TTCTAAT-----CTT-AAAGTAGAATTTTCAActacgactttgttaataaaactttattcaatttagcagtattagaatattttgaactgccaaagttatagagagaatcttttgatggtcagtatatatt
gi|23 : tcaataCTTTAT-----TTATATAGCAATTTT-TAA-AATGTT---------TG--TATGTT-T-----T----GAATG--T--TTA----G-A-A-----TATCTT------G-T-----T--TC------TA---------A--G---TCTGAAAA--TATA-ATTAAA------A-TC-CGTTGTCAA---TT----AAATGAGATA--------TGAGGTGAGCCGGT-CATT--TCGaactc
gi|24 : AACCAATTT-TAATAATGTG---------TA--TACATT-T-----A----GAAAG--C--TTC----A-G---------------------------T--TC------T------------------CTTATTA--GATACACTAAATATATGA-TA-TAC-ATCAA---AT----ATATGATATACA--CAGCTGAAATGAGCTAAT-CATT--GTGTTTT------A-ATT--------T--ACAAT---TTTTTT--taaccaagtcatttcgtaaccgttttt
gi|26 : -----GTT-TT--T-C-C--AAAAAT-GGTAGCTG---GCGAAGC--ATATCAA-----TTCGTTAT-----TGGT-TAACCGGTTT-TGATAATACT---------TA--TATGTT-T-----A----GATAG--C--T--------G-A-------------------------------------G---------A--A---ACTGACAT--GATA-GTTAAA------A-TC-AATT-TAAAC--AT----GAAagg
gi|27 : A---GAA-T------T-TTGAG-------A-A--CTC-AATGC-TGCAT-GGAGAAGAGTTTTGat
gi|28 : taaatttgcacataattaaggcaaatgatatagatggactactgaaatctgtctctttggaattatttaatcttggA-------A-A--CTC-AATGC-TGCTT-GGAGCAGAGTTTTGAAt
gi|3 : AGTTATATCGAATATTGGAC---ATTAGT---AA-AGCA-TGA-C-----ACTGC---TGA-TTAA-----GTT-TT--T-T----AGAAAG-GGTAGTTGCTAACG-TGC--ATATCAA----TTTCTTTAT-----TTAT-TAACCGACTT-AAATAGTATT---------CA--TATGTG-T-----C----GAGAG--C--GTA----G-G-A-----T-----------A-T-----T--T--------------------------------A--GGT----------------TC-CA-----AA---AC-------TGAAA---AGATAATTGAACTAAGCCGGT-TATT--ATGACTA------A-ATT--------TACTCAAT---AGTTTT--TATTTA---GCCTATTA-AAACCAGACG-GTA----TT---TG----TTTT----T----ATATAAT-ATTCGAA-----TTT-A-ATATTTCT--GGTATTTCTGTGTCAG-AACATAATGTAGCTC-A-CGAAAGC------------TATAGA-------ATCAAT-AATTACAGAAAATACATC-CTTT-C-----AAA---G----TAGG-CAC-TGAAAATATATTACCGGTATTTA-ATATAAACT---TTTGCGGTTGG----AAAAA-----C-GTAGCAATTTCCCAGTAAAT--A-TT--TT-CAA----TA-T-TGTGTT---T----ATG--AACA--T--A--C-TTCTGAAGTTCTTTCATTTTATGT----GATATAAACAA--TA----TCAGACTAAGTTGATTTCAAGAA-----AAA---TATTAAA----AA------T-----------------aaatgtctgatctatttctctactgatccatcaccagcccaagactttcagtgcttacagcactctgat
gi|3 : ttactatgtattaattatgtgtacA----AA------T-----------------CT--TTG-A--------------G---------TA---CAA-T------T-GTGAA-------A-A--CTC-AGTAG-TACTT-CGAGTAGAATTTCGAAgaactcctgaaatctggcgtttggtgagtttaaatctttgagtacaattgtgaaaactcagtagtacttcgagtagaatttcgaaaaaatataatcccatatctccaagaagccgcctgcagagcagcgctttgatt
gi|33 : ttactatgtattaattatgtgtacagttatatcgaatattggacattagtaaagcatgacactgctgattaagttttttagaaagggtagttgctaacgtgcatatcaatttctttatttattaaccgacttaaatagtattcatatgtgtcgagagcgtaggatatttaggttccaaaactgaaaagataattgaactaagccggttattatgactaaatttactcaatagtttttatttagcctattaaaaccagacggtatttgtttttatataatattcgaatttaatatttctggtatttctgtgtcagaacataatgtagctcacgaaagctatagaatcaataattacagaaaatacatcctttcaaagtaggcactgaaaatatattaccggtatttaatataaacttttgcggttggaaaaacgtagcaatttcccagtaaatattttcaatattgtgtttatgaacatacttctgaagttctttcattttatgtgatataaacaatatcagactaagttgatttcaagaaaaatattaaaaatgaactcctgaaatctggcgtttggtgagtttTAAA------A-TT-CATTATCAA---AT----GAATGAAATACAGACAGTTGAACTGAGCTAGT--ATT--aaaatataatcccatatctccaagaagccgcctgcagagcagcgctttgatt
gi|35 : aAT------AATTTT-GCATTAAAT---TTTGCAGTTCG----CAAAAA--C-CTG--GCGATA-TCT-TTAAttcgctcgaaaaggttaacgatgtcc
gi|36 : T--ATG-A--------------G---------CACATGGA-T------T-T-----------G-A--TTC-AATGC-TGCTT-GGAGTAGAGTTTTGAcg
gi|4 : TGTCGACTAAGGAACA-GAT--GT---AAGA-CA-TGG-T-GGT-TTTGG---CAAACGCA-----GTT-TT--T-G----AGAAAG-GGTAGCTG---GTTGGGA--ATCTTAG----CGTCGTTAT-----TTAT-TAA--------------TGTT---------TA--TATGTT-T-----A----GAAAT--A--TTA----C-A-A-----T-------------------T--TC------TA---------GTTA---A-TGAAAA--TATA-ATTAAA------A-CT-CATTATTCA---AT----GAATTAGATACAGACAGTTAAACTGACCTGGT-CATT--GCGATTATATTTCATATT--------TACACAAT---ATCTAT--CGCTCG-------A--A-AAGCATGCTG-GTACC--TT---TAAT-TTTTT----T----AATTATG-ATTCGAT-----TTT-A--TATGTTT--TATATTTCTGCGTATGAATCATAGTGTTGTTCTATGGAAGAC-------AAAGTTATTGAAAA-TCAATCAAG-AATTTCAGGAGTTACAAC-CTTT-C-----ACT---A----TACG-AAC-TGAAAATATATAG----TATTTC-ACATTGAAT---TTTACGGTTGG----AAAAAAACC-T-G--GCAGTGCCCC-TTAAGTATA-TTATTT-T-AATTTTGAT-TTTATTT-AT----ATA--AGTA--T--A--A-TGCTGAAATTATGTAGTTTTATGTG---T-TATTTACAT--AA----TCAAACTTGGATAATTTAAACACAAAAAAAAGACTACTGAAATCTGACTT---T-----------------TT--GTG-AAATTTAATCTTGGTG---------TA---GAA-G------T-TTTAA-------A-A--CTC-AATGC-TGCTTAGGAGT
gi|5 : ttgtaacacatattttcactgtgtaaaagggagtactcagttt-GAT--GT---AA-A-----GG-C-GTA-ACTGA---TA----------------T--T-T-T--AGAAAC-GGTAGATG---GCGATGC--ATATTAA----CTGGTTT---------------------T-TAATATTGAG---------TA--TATGTT-T-----A----GAAAG--C--TGA----A-G-A-----TATCTT------G-T-----T--TT------CG---------A--A---ACTGAAAA--GATA------------------CATTATCAA---AT----GAATGAGATACAGACATTTAAAGTGAGCTGGTACATT--TCGCTCA------A-Atg
gi|5 : tttaaaagaaatataaatttgatatgcgagcataatgcactatatgcatacaatggccagtctacgtaatttgcctggcgctgaataccagtccaagttgtgctgggcgggtttattctgaaaaatagtGCTCAA-AAAAAACT---------GTTATTGAAAA-TCGA---AC-AATTATAGAAGCTACA-TTCTTT-C-----GGA---T----TACG-TCC-TTAAA-TAAAT------TATTTT-GCATTAAAT---TTTGTTGTTGG----AAAAAC--C-C-G--GCGGTACGCC-TTAAC---A-CT--TG-T-A----TACA-TTAATTT-AT----ATA--AATA--T--A--A-TGCTGACGTTCTGTAGCTGTATGTG---T-TATAAACAC--AA----TCAAATTCGAATAATTTGAGAAC-----AAaaaaactgttattgaaaatcgaacaattatagaagctacattctttcggattacgtccttaaataaattattttgcattaaattttgttgttggaaaaacccggcggtacgccttaacacttgtatacattaatttatataaatataatgctgacgttctgtagctgtatgtgttataaacacaatcaaattcgaataatttgagaacaattctaaattatggagatttaagaaaaaaaaacaaaaactaccgaaatctgattcttgggaatttttaatcttggagcagaattttaaaaactcgatgctgcttagagtagagttttaaagaatatctgacctacttct
gi|5 : tttaaaagaaatataaatttgatatgcgagcataatgcactatatgcatacaatggccagtctacgtaatttgcctggcgctgaataccagtccaagttgtgctgggcgggtttattctgaaaaatagtgatgtaaaggcgtaactgatattttagaaacggtagatggcgatgcatattaactggtttttaatattgagtatatgtttagaaagctgaagatatcttgttttcgaaactgaaaagatacattatcaaatgaatgagatacagacatttaaagtgagctggtacatttcG--A--A--C--A--A-TTCTAAA-TTATGGAGATTTAAGAA---AAAA-AAACAA--AAACTACCGAAATCTGATTCTTGGGA----------A---TTTTTAA------------T-----------------CT--TGG-A--------------G---------CA---GAA-T------T-TTAAA-------A-A--CTC-GATGC-TGCTT-AGAGTAGAGTTTTAAAttctaaattatggagatttaagaaaaaaaaacaaaaactaccgaaatctgattcttgggaatttttaatcttggagcagaattttaaaaactcgatgctgcttagagtagagttttaaagaatatctgacctacttct
gi|6 : tttaaaagaaatataaatttgatatgcgagcataatgcactatatgcatacaatggccagtctacgtaatttgcctggcgctgaataccagtccaagttgtgctgggcgggtttattctgaaaaatagtgatgtaaaggcgtaactgatattttagaaacggtagatggcgatgcatattaactggtttttaatattgagtatatgtttagaaagctgaagatatcttgttttcgaaactgaaaagatacattatcaaatgaatgagatacagacatttaaagtgagctggtacatttcgctcaaaaaaaactgttattgaaaatcgaacaattatagaagctacattctttcggattacgtccttaaataaattattttgcattaaattttgttgttggaaaaacccggcggtacgccttaacacttgtatacattaatttatataaatataatgctgacgttctgtagctgtatgtgttataaacacaatcaaattcgaataatttgaAAGTGATGCAAAGTAAGCGGCT-GGT--GT---AA-A-TA-TGA-C-AAT-ACTGT---TAAATTTA-----GTT-TT--T-T-C--TGAAAG-GATAGCTG----CAACTC--ATATTTA----TTTCTTTAT-----TTAT-TTACCAATTT-TAATAACGTT---------AA--TATATT-T-----A----GAAAA--A--TCA----A-G-A-----T-----------G-T-----T--TC------CG---------A--A---ACTGAAAA--GATA-ATTAAG------A-TC-CATTATCAA---GT----GAATGAGGTACAGGCAGTTAAACTGAGCTGGT-CATT--GCAATTA------A-ATT--------TACACAAT---ATTTTT--TACTTG---G---A--A-AAACCTGACG-GTACCCTTT---TAAC-TTTAC----C----ATTTATT-ATTTGAT-----TTT-A-AAATTGCT--TATGTTTCTATGTAAGAAACATAATGGAGTTCTG-GTAAAGCTTAGTATAAAGTTATTGAAAA-TCGACCAAG-AGTAATAGAAGATACA-C-CTTT-C-----AAA---A----TATG-AAC-TGAAAATGTAT------CATTTT-GCATTAAAT---GTTTCCGTTGG----GAAAAA--C-A-G--TTGGTACCCC-TTAAA---A-CC--TT-T-A----CACT-TTTATTT-AT----ATG--A--A--T--A--A-TAATAAAGTTCTGTGGTTTTATGTGTCAGATATAAACAA--AA----TCAAAATCTGATAATTTGAAAAC-----AAA---TAATAAA----GA------T-----------------CT--GTG-A--------------G---------TA---AAA-T------T-ATGAA-------A-A--CTC-AATTC-TGATT-GG---AGAATTTTGAAgaatatctgacctacttct
gi|7 : T--T-T-G--AGAAAAAGGTAGCTG---GCAGTGC--ATATATT----CTTCTTTAT-----ACAT-TAACCGATTT-TAATAATTTT---------TA--TATGTTGT-----ATGTTGAAAGAAC--TTA----AAG-A-----TTAAAATATTTTG-T-----T--TT------CA---------A--A---ACGGAAAA--GAAA-ATTAAG------A-TAATATTATTAAGGAATTTAGGAATGAGATACATACAGTTAAG-------------TT--GCGATTA------A-AAT--------TATACACT---ACGTTT--TGCTT--------A--ATAAACCTTGCG-GTACT-TTT---TAAC-TTTCTTTCTC----ATTTATA-ATTGGAT-----ATT-A-ATATAATT--TATATTTCTATGTAAGGTATATAACGTAGTTCCA-GGAAAGC------TAAAATTATTAGAAA-TCGTTCAAC-AATTACGGAA-ATAAA-C-TTTT-C-----AAA---A----TACT-CCC-TTAAAA---GT------T-TTTC--CATTAAA----TTTGCGATTGG----AAAAGT--C-T-G--GCGGTACCCA-TTTAA---T-TA--TT-T------TAGC-TTTATTT-AT----ATG--A--C--T--ATTA-TGCTCAGGTTCCATAGTATAATA-G---AATGTTAACAATTAA----TGACAAAC-GATAA
gi|8 : ta-T-T--AGAAAT-GGTA-CTG---GTTGTGA--ATAT-AA----TTTCTTT-T-----TTGT-TAACAGATTC-GAACAATGCT---------TA--TATGAT-T-----A----GAA-G--C--TTA----A-G-A-----T-----------A-T-----T--TTATTTTTTG---------A--A---ACTGAAAA--GATA-ATAAAA------A-TA-AATCATCAT---AT----GAGTGAGATACTGACAATTGAACTGAGTTGGT-C-------GATCA------A-ATT-------------------A-------CGCTTG---A---A--A-AAAT-TGACG-GTACCCTTT----AAC-TTT-------------------ATTTGAT-----TTT-A-ATATTCTT--TATATAACTATGTAAGAAACATAATTTAGTTCT--GAAAAGCT-----T-AAGTCATTGAAAA-CCAATAAAA-AATTATTGAAGATACATC-CTTT-C-----AAA---A----TATG-TAC-TGAAAATATAT------GATTTC-ACAT-----------------------AAAATA--C-CTA--GCAGTA-CCC-TTAAA---A-TA--TT-T-A----TACT-TTCATTT-AT----ATG--A--ATGT--A--A-TGCTGAAGTTTTGTACTTTTATG-A---GATAT-GATAT--AA----TTATAACTGAATAA-TTGAAGAC-----AAA---TAATAAA----GA------TGGA--------------CTA-CTG-A------------------------------AA-TCTGACAC-TTGGA-------A-ATTTTT-AATGCAT------GAGTAGAATTTTGAAgatactactgatactactattgatactactgaaatctgactctcaaatttcaatattgaagtatagttatggaaac
gi|9 : -----GTT-TA--T-T-C--AGAAAA---TATGTA---GGGGTTT--ATATTAA----CATCTTTGTCAATTTTGT-TAACCGATTT-TAATAATGTT---------CA--TATGTT-T-----A----GAAAG--C--TGA----A-T-ATATCTT-----------G-T-----T--TT------CG---------A--A---ACTGAAAA--GATA-ATTAAA------AGTC-CATTATCAA---AT----AAATAAGATACACACATTTaattcaattcttcttggaacagagttttgaaaaat
gi|9 : ----C----ATTTATT-ATTCAAT-----TTTGA-ACATTCTT--TATATGTCTA-GTTC-AAACATAATGTAGTTCTA-GGAAAGCT------AAAGTTATTGAAAA-TAGATCAAG-ACTGACAGAAGGTACA-C-CTattattcaattttgaacattctttatatgtctagttcaaacataatgtagttctaggaaagctaaagttattgaaaatagatcaagactgacagaaggtacacctgaagtctttatattttaatttatatgaatataatgctgaagttttgtagttttatgtgatataacaaaatcaaattcagatgattggaagacaaataataaagttggactactgaaatttgaatctagggaattttcaattgttgagtagaattttgaaaactcgatgcaacttggagaagatttttgaaaaatgtcttaatctacttttccgtcaccatcccaagacttttagcgctcacagtgctttgattaaatattggacaaattagtaaaaatgc
gi|9 : gtttattcagaaaatatgtaggggtttatattaacatctttgtcaattttgttaaccgattttaataatgttcatatgtttagaaagctgaatatatcttgttttcgaaactgaaaagataattaaaagtccattatcaaataaataagatacacaGGTACACC-T-GAA---G-TC--TT-T-A----TATT-TTAATTT-AT----ATG--A--A--T--ATAA-TGCTGAAGTTTTGTAGTTTTATGT----GATAT-AACAA--AA----TCAAATTCAGATGATTGGAAGAC-----AAA---TAATAAA----G--------------------------T--TGG-A--------------C---------TACT-GAA-A------T-TTGAATCTAGGGA-ATTTTC-AAT---TGTT---GAGTAGAATTTTGAAgaagtctttatattttaatttatatgaatataatgctgaagttttgtagttttatgtgatataacaaaatcaaattcagatgattggaagacaaataataaagttggactactgaaatttgaatctagggaattttcaattgttgagtagaattttgaaaactcgatgcaacttggagaagatttttgaaaaatgtcttaatctacttttccgtcaccatcccaagacttttagcgctcacagtgctttgattaaatattggacaaattagtaaaaatgc
blockSeqs : A CCAG TA TTA G ACA A T T GAT AATTTACACAAA G AA A CTT AA CTA TT ATACC A CAATT A A AACTGATTT AT G ATGTAA AA AA AAGATTAAAATATTTTGTTTTCA TT GTT AA C TATATG G A GGA TTAG A A TG TATTTC T GACTCGTT T TAA TT TAGCCT TT T T CT TAACT TTTTT T C ACGAT A G A GT A AGA T CTTAGTATA AA C A GC A AGTCA ATATG G G TACCGG CA A CTG A AGGA TCTC TA A TATATTAT A AATTT CTA G TTTA TC AC TG . TA T TGTCAG A TT ACTA A T AAAAA GAC ATCT CTTTTTGTGAAATTTAATCTTGGTGTA C CTGACA C TCTAGGG T TT T G A AG
blockSeqs : C CAG . . . AAA . . . . AGATTAG . . . C G . . C A . . . . AA . ATGTT . . ATGTTATTCTGGGAAAGCTT . . . . . . . C . G . . CATTA . AT T . . GAAAA . . . CT TAAC TTCTC . T . G . C . A GTA . CTA A . A GC . . TATG . . AG T A . T . ACCT . . AGTC . AA AA . . . GT . . GA . TGT A . . G C . . . TTGACTATGAAATCATGGATTA . . . . . GT . G . G
blockSeqs : A CAG . . . GCA . . . . CTTTTAG . . . A T . . C A . . . . . . TAA . . AGATATTTTATTTTTTG . . . . . . . . . A . . . . . A . . TGG . . . AT TAAC C . G . . . C . A GTA . CTT A . A AC . . AA . . . T A . G . CCT . . TATT . T CT . . . AT . . TT . TGT A . . A G . . . ATAACTTCTCAGTGAAATC . . . . . TT . G . T
blockSeqs : C CTG . . . CA . . . . ACATTAG . . . T T . . T A . . . . . . A . . GAGTATCTAGTTCCCA . . . . . . . . . C . . . . . A . . TGG . . . CT TAAT A . C . . . T . A GTA . TTG A . A TC . . A . . . T A . T . CAT . . ATC . A CG . . . . . . TA . AAA C . . G G . . . TGGACTATCGATATCT . . . . . TT . T . T
blockSeqs : C AC . . . CC . . . . AACGCAG . . . C C . . A A . . . . . . A . . GGATATTTTGTTTTAG . . . . . . . . . C . . . . . A . . CGA . . . CA TAAC C . A . . . C . T GTA . GTA T . A AC . . A . . . G A . G . CCT . . ATC . A CT . . . . . . T . TG A . . T G . . . TGGACTACTGACATC . . . . . . . G . G
blockSeqs : A A . . . TA . . . . AATTTAG . . . T T . . T A . . . . . . A . . GAGTATCGAGATTCTA . . . . . . . . . A . . . . . A . . CGA . . . CT TAAC C . C . . . T . G GTT . CTA C . A TT . . A . . . C A . G . CCT . . ACC . A CT . . . . . . . . TG A . . G A . . . TGGACTACTGA . . . . . . . G . G
blockSeqs : A . . . CA . . . . TATATA . . . C T . . T A . . . . . . T . . GAATATCTTGTTTCTA . . . . . . . . . A . . . . . A . . TGG . . . CT AAC C . G . . . C . A GGA . CTA A . T TC . . A . . . C A . G . CA . . ATG . G AT . . . . . . . . TG A . . A G . . . TCTCTAAGTA . . . . . . . A . A
blockSeqs : C . . . TA . . . . ATTAAG . . . G G . . C A . . . . . . T . . AGATATCTTGTTTTCG . . . . . . . . . G . . . . . A . . TGA . . . CT TAC C . C . . . C . A GTA . TTA A . C A . . G . . . A G . G . CT . . ACT . A CA . . . . . . . . TG T . . G C . . . TCTTGGAGTA . . . . . . . G . A
blockSeqs : . . . . . . . . . . . . T G . . C A . . . . . . A . . ATATATCTTGTTTTCG . . . . . . . . . A . . . . . A . . GG . . . T GAC T . C . . . T . G TTA . CTA A . A C . . G . . . T A . A . CT . . ACC . G CT . . . . . . . . CG A . . G A . . . TCTTTGAGTA . . . . . . . G . G
blockSeqs : . . . . . . . . . . . C C . . T A . . . . . . A . . ATTATCTTGTTTCTG . . . . . . . . . C . . . . . A . . AG . . . A AAC C . C . . . T . A GTA . CTT A . A C . . A . . . C A . G . CC . . TTA . A GC . . . . . . . . TG A . . T A . . . TCTTGGAGCA . . . . . . . G . G
blockSeqs : . . . . G . . C A . . . . . . C . . AGATGTTTCCG . . . . . . . . . C . . . . . A . . CG . . . T AA T . T . . . G . A . . CTA A . A C . . T . . . T A . T . CA . . ATA . A CT . . . . . . . . GA A . . T G . . . TCTGTGAGTA . . . . . . . T . C
blockSeqs : . . . . T . . T G . . . . . . A . . CAATTTCTA . . . . . . . . . C . . . . . . . . G . . . . TA T . G . . . A . . . . CA A . G . . . A . . . T . . C . CT . . GTC . A TT . . . . . . . . AG T . . G G . . . TTGGACTACT . . . . . . . G . G
blockSeqs : . . . A . . C . . . . . . . A . . GGATATTT . . . . . . . . . G . . . . . . . . T . . . . TG C . T . . . C . . . . CT . . . . . . A . . . C . . G . C . . . . A T . . . . . . . . TG . . . A . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . A . . GTTTATA . . . . . . . . . C . . . . . . . . . . . . . T C . C . . . C . . . . C . . . . . . A . . . C . . . . C . . . T . . . . . . T . . . . . . . . . . . . . G
blockSeqs : . . . . . . . A . . AGTTCT . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . A . . GAG . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : CAG* CA** C*** CGG****** TAAC**** CTA****** C** ATC****** A***** **
originalCons : AAGTGATGCCGAATAAGGGACC-GAT--GT---AA-A-CA-TGG-C-GGT-ACTGT---TAANTTTA-----GTT-TT--T-T-C--AGAAAN-GGTAGCTG---GCGGTGC--ATATTAA----CTTCTTTAT-----TTAT-TAACCGATTT-TAATAATGTT---------TA--TATGTT-T-----A----GAAAG--C--TTA----A-G-A-----T-----------G-T-----T--TC------CG---------A--A---ACTGAAAA--GATA-ATTAAA------A-TC-CATTATCAA---AT----GAATGAGATACAGACAGTTGAANTGAGCTGGT-CATT--GCGATTA------A-ATT--------TACACAAT---ATTTTT--CGCTCG---G---A--A-AAACCTGGCG-GTACCCTTT---TAAC-TTTTT----C----ATTTATT-ATTCGAT-----TTT-A-ATATTCTT--TATATTTCTATGTAAGAAACATAATGTAGTTCTA-GGAAAGCT-----TAAAGTTATTGAAAA-TCGATCAAG-AATTACAGAAGATACA-C-CTTT-C-----AAA---A----TACG-TAC-TGAAAATATAT------TATTTC-GCATTAAAT---TTTGCGGTTGG----AAAAAA--C-C-G--GCGGTACCCC-TTAAA---A-TC--TT-T-A----TACT-TTTATTT-AT----ATG--A--A--T--A--A-TGCTGAAGTTCTGTAGTTTTATGTG---GATATAAACAA--AA----TCAAAATCGGATAATTTGAAGAC-----AAA---TAATAAA----GA------T-----------------CT--NTG-A--------------G---------TA---GAA-T------T-TTGAA-------A-A--CTC-AATGC-TGCTT-GGAGTAGAGTTTTGAA
finalCons : AAGTGATGCCGAATAAGGGACAG-AT--GT---AA-ACA--TGG-C-GGT-ACTGT---TAANTTTA-----GTT-TT--T-TC---AGAAAN-GGTAGCTG---GCGGTGC--ATATTAA----CTTCTTTAT-----TTAT-TAACCGATTT-TAATAATGTT---------TA--TATGTT-T-----A----GAAAG--C--TTA----A-G-A-----T-----------G-T-----T--TC------CG---------A--A---ACTGAAAA--GATA-ATTAAA------A-TC-CATTATCAA---AT----GAATGAGATACAGACAGTTGAANTGAGCTGGT-CATT--GCGATTA------A-ATT--------TACACAAT---ATTTTT--CGCTCGG------A--A-AAACCTGGCG-GTACCCTTTTAAC----TTTTT----C----ATTTATT-ATTCGAT-----TTT-A-ATATTCTT--TATATTTCTATGTAAGAAACATAATGTAGTTCTA-GGAAAGCTA------AAGTTATTGAAAA-TCGATCAAG-AATTACAGAAGATACAC--CTTT-C-----AAA---A----TACG-TAC-TGAAAATATAT------TATTTC-GCATTAAAT---TTTGCGGTTGG----AAAAAA--C-C-G--GCGGTACCCC-TTAAAATC------TT-TA-----TACT-TTTATTT-AT----ATG--A--A--T--A--A-TGCTGAAGTTCTGTAGTTTTATGTG---GATATAAACAA--AA----TCAAAATCGGATAATTTGAAGAC-----AAA---TAATAAA----GA------T-----------------CT--NTG-A--------------G---------TA---GAA-T------T-TTGAA-------A-A--CTC-AATGC-TGCTT-GGAGTAGAGTTTTGAA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TGATGTTGCGTAACTAAACTTCATTTGACTGGTTCATTTTACTTCCTGTTCGAAAAAGTACGAATACTGTCAACTGTATGCAGGCTATTGTGTTAGTGATGCAAAGTAAGGAAAATGGGTAAAACATATA
Unaligned ( gi|29 ): TCCGGTCATTTTGTAACCAAGTCATTTCGTAACTGCGTTTTTGGTCATTTCGTAACAGGTTTGAACTGTTGGATAATGTCGTAACCACTTTTTAGGTC
Unaligned ( gi|30 ): TCCGGTCATTTCGTAACCAAGTCATTTCGTAACTGTTTTTTTTTTGGTCGTTTCGTAACCATTTTTTCAGTCATTTCGTAACCACTT
Unaligned ( gi|31 ): TCTGGTCATTTCGTAACCAAGTCATTTTGTAACTGTTTTTTTTGGTCGTTTGTAACTATTTTTTCGGTCATTTCGTAACCAC
Unaligned ( gi|32 ): CTGTCATTTCGTAACCAAGTCATTTCGTAACCAAGTCTTTTCGTAACCCGTTTAAAATGTTGGTCAATCCGTAACCATATTT
Unaligned ( gi|34 ): TAACCAAGTCATTTCGTAACCGGGTTTTTTTTTCGGTCGTTTCGTAACCATTTTTTCGTTTTTTTACGAAATGACCG
Unaligned ( gi|37 ): GCACAAACACCACTGGACTGGTTCACTCCACTTCCTGT
Unaligned ( gi|38 ): TGAAGACAAATAATAAAGATGGACTACTGAA
Alignments
lowQualScore : 1111 111111111111 1111 66666666666666666666666666666666666666666666666666666666 111111 11111111 222222222 11111111 111 111111 111111 111111111 11 11 222222 66666666666666666666666666666666666666666666666666666666666666666666 11
lowQualScore : 3 333 5 3 3 7777 55 3 3 3 666 888888888888 3 33 2 4444 66 444 33 66666 1 66666 2 0 2 999999999 66 2 9999999999 33 33 55555555555555555555555555555555555555555555555555555555 33 444 33 2 666666 2 2 555 4444 3 2 33 222222 2 22222222 3 444 33 0 444444444 33 2 3 0 2 55 11111111 777777777 2 3 66666 2 2 55 66666 33 1 2 1 777777 1 1 2 1 2 0 888 2 66666 88888888 1 2 0 2 000000 1 44 1 0 444 2 5555 333333 33 2 111111111 2 999999 444 2 6666 33 11 33 33 77 2 0 444444 2 33 5555 3 2 77777 555 0 11111111111111111111111111111111111111111111111111111111111111111111 2 777777 2 7777777 2 22 2 5 2 44
lowQualScore : . ... . . . .... .. . . . ... ............ . .. . .... .. ... .. ..... . ..... . . . ......... .. . .......... .. .. ........................................................ .. ... .. . ...... . . ... .... . . .. ...... . ........ . ... .. . ......... .. . . . . .. ........ ......... . . ..... . . .. ..... .. . . . ...... . . . . . . ... . ..... ........ . . . . ...... . .. . . ... . .... ...... .. . ......... . ...... ... . .... .. .. .. .. .. . . ...... . .. .... . . ..... ... . .................................................................... . ...... . ....... . .. . . . ..
lowQualScore : 0 777 3 6 6 2222 00 6 6 6 444 333333333333 1 99 7 5555 33 777 77 00000 1 22222 5 7 4 444444444 55 4 6666666666 11 11 22222222222222222222222222222222222222222222222222222222 22 111 11 2 111111 1 1 888 5555 9 2 11 666666 4 55555555 4 444 44 9 999999999 77 7 2 3 7 22 11111111 444444444 5 4 22222 5 5 99 11111 44 2 7 2 222222 9 8 5 4 5 4 222 7 77777 77777777 3 7 1 7 666666 8 88 1 1 444 4 3333 888888 77 5 555555555 9 666666 222 9 1111 77 00 77 77 33 7 2 222222 6 77 7777 7 4 11111 444 8 44444444444444444444444444444444444444444444444444444444444444444444 5 222222 5 6666666 4 99 4 6 4 00
consensus : AAGTGATGCCGAATAAGGGACAGNTGTAA-A-CA-TG--G-C-GGT-ACTGT---TAANTTTA-----GTT-TT--T-T-C--AGAAAN-GGTAGCTG---GCGGTGC--ATATTAA----CTTCTTTAT-----TTAT-TAACCGATTT-TAATAATGTT---------TA--TATGTT-T-----A----GAAAG--C--TTA----A-G-A-----T-----------G-T-----T--TC------CG---------A--A---ACTGAAAA--GATA-ATTAAA------A-TC-CATTATCAA---AT----GAATGAGATACAGACAGTTGAANTGAGCTGGT-CATT--GCGATTA------A-ATT--------TACACAAT---ATTTTT--CGCTCG---G---A--A-AAACCTGGCG-GTACCCTTT---TAAC-TTTTT----C----ATTTATT-ATTCGAT-----TTT-A-A--TATTC----TT--TATATTTCTATGTAAGAAACATAATGTAGTTCTAGGAAAGC------TAAAGTTATTGAAAA-TCGATCAAG-AATTACAGAAGATACA-C-CTTT-C-----AAA---A----TACG-TAC-TGAAAATATAT------TATTTC-GCATTAAAT---TTTGCGGTTGG----AAAAAA--C-C-G--GCGGTACCCC-TTAAA---A-TC--TT-T-A----TACT-TTTATTT-AT----ATG--A--A--T--A--A-TGCTGAAGTTCTGTAGTTTTATGTG---GATATAAACAA--AA----TCAAAATCGGATAATTTGAAGAC-----AAA---TAATAAA----GA------T-----------------CT--NTG-A--------------G---------TA---GAA-T------T-TTGAA-------A-A--CTC-AATGC-TGCTT-GGAGTAGAGTTTTGAA
Reference ( family-870 ) : AAGTGATGCCGAATAAGGGACAGATGTAA-A-CA-TG--G-C-GGT-ACTGT---TAANTTTA-----GTT-TT--T-T-C--AGAAAN-GGTAGCTG---GCGGTGC--ATATTAA----CTTCTTTAT-----TTAT-TAACCGATTT-TAATAATGTT---------TA--TATGTT-T-----A----GAAAG--C--TTA----A-G-A-----T-----------G-T-----T--TC------CG---------A--A---ACTGAAAA--GATA-ATTAAA------A-TC-CATTATCAA---AT----GAATGAGATACAGACAGTTGAANTGAGCTGGT-CATT--GCGATTA------A-ATT--------TACACAAT---ATTTTT--CGCTCG---G---A--A-AAACCTGGCG-GTACCCTTT---TAAC-TTTTT----C----ATTTATT-ATTCGAT-----TTT-A-A--TATTC----TT--TATATTTCTATGTAAGAAACATAATGTAGTTCTAGGAAAGC------TAAAGTTATTGAAAA-TCGATCAAG-AATTACAGAAGATACA-C-CTTT-C-----AAA---A----TACG-TAC-TGAAAATATAT------TATTTC-GCATTAAAT---TTTGCGGTTGG----AAAAAA--C-C-G--GCGGTACCCC-TTAAA---A-TC--TT-T-A----TACT-TTTATTT-AT----ATG--A--A--T--A--A-TGCTGAAGTTCTGTAGTTTTATGTG---GATATAAACAA--AA----TCAAAATCGGATAATTTGAAGAC-----AAA---TAATAAA----GA------T-----------------CT--NTG-A--------------G---------TA---GAA-T------T-TTGAA-------A-A--CTC-AATGC-TGCTT-GGAGTAGAGTTTTGAA
gi|1 : TGCTGAATAGGGGATCGTTGTAA-AACA-TG--G-C-ACT-ACTGT---TAACTTTT-----TTT-TT--T-TTC--TGAAAG-AGTAGCTG---CTGGTGC--ATATTAA----CTATTTTAT-----TTAT-CAACTGATTT-TAATATTGTT---------TA--TAGGTT-T-----A----GAAAG--C--TTAGAACA-T-A-----T-----------ACT-----T--TT------CA---------A--C---ACTGAAAA--AATA-ATTAAA------A-TC-CATTTTTAA---AT----GGATAAGATAAAGACAGTTAAACAGAGCTGGT-TATT--GTGATTA------A-ATT--------TACACAA----ATTTTT--A--TCA-------A--A-AAACCTGGCG-CTACCTTTTAAATACC-GTTTT----C----ATTTATT-ATTTAAT-----TTT-A-A--TATTG----TC--TATATTTCTATGTAAGAAACATAATGTTATTCTGGGAAAGC------TTAAGTTACTGAAAA-GTGATCAAG-AATTACAGAAGATACA-C-CTTT-T-----AAA---A----TATG-TAC-TGAAAATAAAT------TATTTC-CAATTAAAT---TTTGCAGATGG----AAAAAA--C-T-G--GGGGTACCCT-TTAA----------TT-T------TCCA-TTTATT
gi|1 : taagtttaacataaattaggaaattacttggtaatgcgcagctaaaatgcgtcatataatggtcagtgcatattcactgtgtaaaagtgatgtatatatacaattgATAAAG-ACAG-T-TAA-A-CA-GA--G-CTGGTTATTGTGATTAAATTTACACAAATT-TT--TAT-C--AAAAA-----ACCTG---GCGCTAC--CTTTTAAATACCGTTTTCAT-----TTAT-TATTTAATTT-TAATATTGTC---------TA--TATTTC-TATGTAA----GAAA---C--ATA----A---------T-----------G-T-----TATTC------TGGGAAAGCTTA--AGTTACTGAAAA--G-TG-ATCAAG------A-----ATTA-CAG---A----------AGATACAC-CTTTTAAAATA---TG---TACT--GAAAATA------A-ATTAT------TTC-CAATTAAATTTTG--CAGATG---G---A--A-AAAACTGGGG-GTACCCTTT----AA--TTTTC----C----ATTTATT-GTTCGGT-----TTT-A-A--TATTA----TT--TACATTTCTATGTAAGAAACATAATAGAGTTTTAAGAAAGC------TAAAGTTATTGAAGA-GTGATCAAG-AACAACAGAAGATACAGC-CTTT-C-----ATA---A----TATG-TGC-TGAAAATATAT------TATTTCAAAATTAAAT---TTTGAAA-TGG----AAAAAgttcggttttaatattatttacatttctatgtaagaaacataatagagttttaagaaagctaaagttattgaagagtgatcaagaacaacagaagatacagcctttcataatatgtgctgaaaatatattatttcaaaattaaattttgaaatggaaaaattttgtttttcagattttaacttacactt
gi|10 : taagtttaacataaattaggaaattacttggtaatgcgcagctaaaatgcgtcatataatggtcagtgcatattcactgtgtaaaagtgatgtatatatacaattgtgctgaataggggatcgttgtaaaacatggcactactgttaacttttttttttttctgaaagagtagctgctggtgcatattaactattttatttatcaactgattttaatattgtttataggtttagaaagcttagaacatatacttttcaacactgaaaaaataattaaaatccatttttaaatggataag--GATA-ATTAAA------G-AT-CATTATGAA---AT----GAGTGAGATGCTGACAGTTGAAGTGAGCAGGT-CATT--GCAGTTA------A-ATT--------TTTACAAT---ATTTTTTTCATTTG---G---A--A-AAACTTGGCA-GTATCCTTT----AAC-TTTTT----A----GTTTATT-ATTTGAT-----TTT-A-G--TAATC----TT--TATATTTCTATGTAAGAAACATTATGTAGTTCTAGAAAAG----------------TGAAA----GCTTAAG-AATTATGGAAGATGCAGC-TTTT-C-----AAA---AA---TTTG-TCT-TGAAAACATGT------T----T-GCAATAAAT---TTTGTTGTTGG----AAAAAA--C-A-G--GCCGTACAAC-TTAAA---AGTC--TT-C-T----TAAA-TTTATTA-AT----ATA--A--A--TGAA--A-TGCTTA-GTTCTGTAGTTTTATGTG----ATATAAACAA--AA----TTAAAATCAGATAATTTGAAGAC-----AAA---TAATATA----GA------ttttgtttttcagattttaacttacactt
gi|11 : AAG--C--TTGG---A-GTA-----TCTA--------G-T-----T--CC------CA---------A--A---ACTGAAA---GATA-ATTAAA------A-TC-TATTGTCAA---AT----GAACG------AGACAGT----------TGGT-CATTTGGC-ATCA------A-ATT--------TACACAAT---ATCTTT---------------------AACCTGGTG-GTACCATTT---T-AC-TTTTT----C----ATTTATT-ATT--A----------A-A--TATTC----TT--TATA-TTCTATGTAAGAAACATTAT---GTTCTAGGAAAGC------TTAATTTATTGAAAA-TTTATC--------ATAGA-----------TTT-C-----AAA---ATATGTATG-TAC-TGAAAATATAT------TATTTT-GC------------TGTGGT------------A--C-----------ATCC-----AA---A-TC--TTAT-A----GACTATTTGTTTGATTTTAATT--T--A--T--A--A--GATAAAGTTCTGTAGGTTCATGT----GATATATACTA--AA----TCAAAATCAGATAATATGAGTAC-----AAA---TTATAAA----GA------TGGACCACTGAAATTGGACT--TTT-A--------------A---------CAT--GAA-T------T-TTACA-------A-G--GTC-AATGC-TGCTT-CGAGTAGAGTctgactacttaaatctgactcttttcaaaattttattcttttatgtaaaattttaaaaacgtgatactgctagaagtaaaaattttaagatttctaacctacttctccgccaagccatctgca
gi|12 : catgatcaattatttctttttaaaatcattAAGGACCAGTTTTAA-A-CC-TG--G-T-GGT-AGTGT---TAAGATTA-----GGT-AT--A-T-A--AGAAAG-AGTAGTTG---GTGGTTCTTATACTTA----CTTATTTAT-----TCAT-TAACCGATTTATAA-AATGTT---------TA--TAATTT-T-----A----AAAAG--C--TTC----A-TTA-----TCTT--------G-T-----T--TC------TG---------A--A---ACTGAAAA--TACA-TTTAGA------A-TC-CATTATCAA---AT----GAAAGAGATACAGACAGTTGAAATGAGTTGGT-GATA--GCGATTA------A-ATT--------TACAAAAT---ATTTTT--CGCT-G---G---A--A-AAACTTGTCA-GTA-GCTTT---TAAC-TTTTT----C----ACTTATT-ATTGAAA-----TTC-A-ATGTATTCTGTATT--TATATTTTT-TG-AA-----------TAATT----GAAATC----------G--ATCAAGAA-T---TTAAG-A-----AGAA-ATACA-TAC--T-G-----AAA---A----TATA-T-----------TAT------T---TT-GCATTAAAT---TTTGCTGATGA----AAAGAC--C-T-G--GCGATACTCC-TTAAA---
gi|13 : gaAAGTGATGCAGCATAGGGCA-ACATGTAA-AACA-TG--G-C-GAT-ACTGT---TATATATA------TA-TT--T-T-T--AGAAAT-GGTTACTG---GCAGTGC--ATATTGA----CTTCTTTAA-----TTGT-TAACCGATTT-TAATAATGTTAACTGATTTTAATCATGTT-TTA---A----GAAAG--C--TTA----G-G-A-----TATTTT------G-T-----T--TT------AG---------A--A---ACTGAAAA--GATA-ATTAAA--------TC-CATTATCAA---AT----GAATTAGATATAGACATTTAAACTGAGCTGGT-CATT--GCAATTA------A-A---------------------GTTTTT--CCCT-----G---A--A-AAAAATGATG-GTACCCTTT---TA---TTTTT----
gi|14 : gttgcaaccaacctccactggtctggttcactccacttcctgttctgaacaatacttagacttactgtatgcaggttattgtctaacaagttcTTT----C----ATTTATT-ATTCAAT-----TTT-AGA--TATTC----TT--TATGTGTCTATGTTCGAAACATATTGTAATTCTAGGAAAGG------TAAATATATTGTAAA-TCGAACAAG-AATTATAAATGACA------TTT-C-----GAA---A----CGTG-CAC-TG-GAATAAAT------GATTTG-GCATT---TCTGTTTACGGTTGC----AAAAAATCT-C-G--GCTGTAC-------------------T-T-A----TACT-TTGATTT-AT----ATA--A--A--T--AT-ATTGCCTACGTTCTGAAGTTTCATGT----GATATAAACAA--AA----TCAAATTCGGACAATTTGAACAC-----AAA---TAATAAA----GA------TTGA--------------CT--ATG-A--------------AATCATGGATTA---GAA-T------T-T---A-------A-A--CTC-AATGC-TGCTT-GGAGTAGAGTTTTGt
gi|15 : GATTA------A-ATT--------T-CACTAT---GTTTTT--CGCT-A---G---A--A-TAACCTGGCATATAA----T---TAAC-GTTTT----C----ATTTTTTTATTAGAA-----TTT-A-G--TTTTT----TTGTTATGTTTGTATGTAAGTAACATAGCGTAGTTTTAGGAAAGC------TAAAGGTGTTTAAAT-TCGATCATGCAATTACGGAAGATACA-A-TCTT-CAGTCAAAA---A----TATG-TACGTGAAAATATAC------TATTTC-GCATCAAAT---TTT---GTTGGAGGAAAAAAA--C-T-G--GCATTACCAT-TTATA---A-TC--T
gi|16 : AGCTGAGCCGGT-CATT--GCGATTA------C-ATT--------TACACAAC---GTTTTT--CGGTCG---A---A--A-AAAT-TGATG-GTACCCATT---T----TTTTT----T----ATTTATT-ATTCTAC-----CTT-A-AA-TATTC----TT--TATATATCTACGTAAGG-------------TCAAGTAAAGC------TAAAGTGATTGACAC-GCTAT------ATT---------------CTTT-C-----GAA---G----TACG-TAC-TGAAAGTAGAT------TATTT--G-ATT--AT---TT---GGTTGG----AAAAAA--C-CTA--GCAGTAACAC-TTAAA---A-CC--TT-T-A----TACG-TTTATTT-AT----ATGTCT--A--T--A--A-TGCTGATGTTaaatatatggtcaataattctgtgaacagtttatattgtattcataattatctaaaaatgtaaataa
gi|17 : TTCTTT-------TCAT-TA-----TCT-TAATAATGTT---------TAAATATGTT-T-----A----AAAA---CAATTA----G-A-G-----T-----------A-TCGAGAT--TC------TA---------A--A---ACTGAAAAAAGACA-ATTAAA------A-CC-CGTTATCAA---AT----GAACTAGATACAGACTGTTGAAATGAGCTGGG-CAAT--GCGATCA------A-ATT--------TACACAAT---AATTTT--CGCT-GAAAA---A--A-AAACTTATCA-GTACCA-TT---TAACTTTTTT----C----ATTTATT-ATTGGAT-----TTT---------------TT--TTTATTTATATGTAAg
gi|18 : tTTTTATTT--------TAAACAC--AA----TCCAAATCAGATGATTTTAAGAC-----AAA---TAATAAA----GAATAACTT-----------------CTCAGTGAA--------------A---------TC---GGA-T------TCTTGGC-------A-ATTTTT-AAT-----CTC-TAAGTAGAATTTTGAattccatacgggtgtaga
gi|18 : ataaatgtgatgttaagtgcaaaatatggcggtatttttAAATCGGATTCTT----GGC-----AAT---TTTTAA-------------T-----------------CT--CTA-A--------------G---------TA---GAA-T------T-TTGAG-------A-A--CTC-AATGC-TGCTT-TGAGTTGAGTTTGGAAgaactcaatgctgctttgagttgagtttggaaaaatatttaacctacttctcctccaagccatctgca
gi|19 : ataaatgtgatgttaagtgcaaaatatggcggtatttttttttattttaaacacaatccaaatcagatgattttaagacaaataataaagaataacttctcagtgAATAAGGAAAATATTTAA-A--A-TAAAG-C-AGC-ACTGT---TACTTTTA-----GTTGTT--T-T-CTTAGAAAT-GACAGTTG---GCGGTGC--CTATTTA----TTTaaatatttaacctacttctcctccaagccatctgca
gi|2 : tttgacgtcgtgtaatcactggactggttcactcttatttcctgtttggaaaattacgtagactggcttatgtaagcagtttattgtgtaaaacgtaatcgtaattgacagtatTGTCGAATAAGGGACAGGTGTAA-A-AAATG--GAC-GGT-ACTGT---TAACATTA-----GTG-TTAAT-T------AATC-TGTAACTG---GCTACGC--AAATTAA----ACTCTTTAT-----TGAT-TAACCATTTT-TAATCATG------------G--AAT-CT-T-----A----GAATA--T--CTA--------------------------G-T-----T--TA------TA---------T--A---ACAGAACA--GATG-GTTAAT------A-TC-CATGATCAA---AT----GCATGAGACACAAACAATTGAAAGGAGATGGT-CATA--ACGATTACATTA-A-ATTGACTCGTTTACACGAT---ACTTTT--CGCTCG---A---A--A-AATACTGGCA-GTACCCTTT----GAC-TTTTT----TTTTTATTTGTT-ATTCGATACGATTTC-G-A--TATTC----TT--GACATTTTT-T-TAA-----ATAAT--------AAGAACGT------TAATGTTA--GAAAAATCGATCAAG-AATTACAAAAGATACAAC-CTTTAC-----ATATATG----TACGGTAC-TGAAAATATAT------TTGTTC-GCATTAA-T---CTTGCGTTTG-----AAAAAA--CAT-G--GCGGTACCGC-TTAAA---A-TG--TT-T-G-----A-T-TTTATTG-AT----ATG--A--A--T--ATAA-TGCTGAAGTTCTTTAGTTTTATAT----GATATCAACAA--AA----TAAAAATCTGATCATTTGAAGAC-----AAA---AAATAAA----GA------TGGA--------------CTA-CTG-AC-------------A---------TC---TAACT------C-TTGGG-------G-AGTTTT-AAT-----CTT-GGAGTAGAACTTTAAAt
gi|2 : acaattgA------T-----------------CT--TGG-A--------------G---------TA---GAA-C------T-TTAAA-------A-A--CTC-AATGC-TGATT-GGAGTAGAATTTTGAAaactcaatgctgattggagtagaattttgaaaactcaattctaattagagtaggatttcgaaaa
gi|2 : acaattgtgtcgaataagggacaggtgtaaaaaatggacggtactgttaacattagtgttaattaatctgtaactggctacgcaaattaaactctttattgattaaccatttttaatcatggaatcttagaatatctagtttatataacagaacagatggttaatatccatgatcaaatgcatgagacacaaacaattgaaaggagatggtcataacgattacattaaattgactcgtttacacgatacttttcgctcgaaaaatactggcagtaccctttgacttttttttttatttgttattcgatacgatttcgatattcttgacatttttttaaataataagaacgttaatgttagaaaaatcgatcaagaattacaaaagatacaacctttacatatatgtacggtactgaaaatatatttgttcgcattaatcttgcgtttgaaaaaacatggcggtaccgcttaaaatgtttgattttattgatatgaatataatgctgaagttctttagttttatatgatatcaacaaaataaaaatctgatcatttgaagacaaaaaataaagatggactactgacatctaactcttggggagttttaG-A--------------G---------TA---GAA-T------T-TTGAA-------A-A--CTC-AATTC-TAATT-AGAGTAGGATTTCGAAaactcaattctaattagagtaggatttcgaaaa
gi|20 : acaattgtgtcgaataagggacaggtgtaaaaaatggacggtactgttaacattagtgttaattaatctgtaactggctacgcaaattaaactctttattgattaaccatttttaatcatggaatcttagaatatctagtttatataacagaacagatggttaatatccatgatcaaatgcatgagacacaaacaattgaaaggagatggtcataacgattacattaaattgactcgtttacacgatacttttcgctcgaaaaatactggcagtaccctttgacttttttttttatttgttattcgatacgatttcgatattcttgacatttttttaaataataagaacgttaatgttagaaaaatcgatcaagaattacaaaagatacaacctttacatatatgtacggtactgaaaatatatttgttcgcattaatcttgcgtttgaaaaaacatggcggtaccgcttaaaatgtttgattttattgatatgaatataatgctgaagttctttagttttatatgatatcaacaaaataaaaatctgatcatttgaagacaaaaaataaagatggactactgacatctaactcttggggagttttaatcttggagtagaactttaaaaactcaatgctgattgAAGTGATGTAGATTATGGG--AAAT--------------G-C-GGT-ATTGT---TA------------TT-TT----------GAAAT-GGTAGCTT---GCGGTGC--ATA-TAA----TTACTTTAT-----TTAT-TAACAGATTT-TAATTATGTT---------TA--AGTGAT-T-----T----GAATG--C--TGA----A-aa
gi|21 : accccactggacgggtttattcagaaaaatatgaagactggctacgttatgcagtgtaacacgtag-A----TGCT-TTTATTG-AT----ATG--A--A--T--AGAA-TGTTGAAGTTCTGAAGTTTTATGT----GATATAAACAA--AA----TCAAt
gi|22 : -T-G----TGCT-TCAGTTT-AT-----TG--G--A--T--A------CTGAAGTTTTGTAGTTTTATGCG----ATATAAACAA--AA----TAAAAATCGGATAATCTGAAAAC-----CAA---TATTAAA----GA------TGGA--------------CT--ATC-G--------------A---------TATCTGAC-C------C-TTGAA-------ATG--TTCTAAT-----CTT-AAAGTAGAATTTTCAActacgactttgttaataaaactttattcaatttagcagtattagaatattttgaactgccaaagttatagagagaatcttttgatggtcagtatatatt
gi|23 : tcaataCTTTAT-----TTATATAGCAATTTT-TAA-AATGTT---------TG--TATGTT-T-----T----GAATG--T--TTA----G-A-A-----TATCTT------G-T-----T--TC------TA---------A--G---TCTGAAAA--TATA-ATTAAA------A-TC-CGTTGTCAA---TT----AAATGAGATA--------TGAGGTGAGCCGGT-CATT--TCGaactc
gi|24 : AACCAATTT-TAATAATGTG---------TA--TACATT-T-----A----GAAAG--C--TTC----A-G---------------------------T--TC------T------------------CTTATTA--GATACACTAAATATATGA-TA-TAC-ATCAA---AT----ATATGATATACA--CAGCTGAAATGAGCTAAT-CATT--GTGTTTT------A-ATT--------T--ACAAT---TTTTTT--taaccaagtcatttcgtaaccgttttt
gi|26 : -----GTT-TT--T-C-C--AAAAAT-GGTAGCTG---GCGAAGC--ATATCAA-----TTCGTTAT-----TGGT-TAACCGGTTT-TGATAATACT---------TA--TATGTT-T-----A----GATAG--C--T--------G-A-------------------------------------G---------A--A---ACTGACAT--GATA-GTTAAA------A-TC-AATT-TAAAC--AT----GAAagg
gi|27 : A---GAA-T------T-TTGAG-------A-A--CTC-AATGC-TGCAT-GGAGAAGAGTTTTGat
gi|28 : taaatttgcacataattaaggcaaatgatatagatggactactgaaatctgtctctttggaattatttaatcttggA-------A-A--CTC-AATGC-TGCTT-GGAGCAGAGTTTTGAAt
gi|3 : AGTTATATCGAATATTGGACATTAGTAA-AGCA-TG--A-C-----ACTGC---TGA-TTAA-----GTT-TT--T-T----AGAAAG-GGTAGTTGCTAACG-TGC--ATATCAA----TTTCTTTAT-----TTAT-TAACCGACTT-AAATAGTATT---------CA--TATGTG-T-----C----GAGAG--C--GTA----G-G-A-----T-----------A-T-----T--T--------------------------------A--GGT----------------TC-CA-----AA---AC-------TGAAA---AGATAATTGAACTAAGCCGGT-TATT--ATGACTA------A-ATT--------TACTCAAT---AGTTTT--TATTTA---GCCTATTA-AAACCAGACG-GTA----TT---TG----TTTT----T----ATATAAT-ATTCGAA-----TTT-A-A--TATTT----CT--GGTATTTCTGTGTCAG-AACATAATGTAGCTC-ACGAAAGC------TATAG--------AA-TCAAT-----AATTACAGAAAATACATC-CTTT-C-----AAA---G----TAGG-CAC-TGAAAATATATTACCGGTATTTA-ATATAAACT---TTTGCGGTTGG----AAAAA-----C-GTAGCAATTTCCCAGTAAAT--A-TT--TT-CAA----TA-T-TGTGTT---T----ATG--AACA--T--A--C-TTCTGAAGTTCTTTCATTTTATGT----GATATAAACAA--TA----TCAGACTAAGTTGATTTCAAGAA-----AAA---TATTAAA----AA------T-----------------aaatgtctgatctatttctctactgatccatcaccagcccaagactttcagtgcttacagcactctgat
gi|3 : ttactatgtattaattatgtgtacA----AA------T-----------------CT--TTG-A--------------G---------TA---CAA-T------T-GTGAA-------A-A--CTC-AGTAG-TACTT-CGAGTAGAATTTCGAAgaactcctgaaatctggcgtttggtgagtttaaatctttgagtacaattgtgaaaactcagtagtacttcgagtagaatttcgaaaaaatataatcccatatctccaagaagccgcctgcagagcagcgctttgatt
gi|33 : ttactatgtattaattatgtgtacagttatatcgaatattggacattagtaaagcatgacactgctgattaagttttttagaaagggtagttgctaacgtgcatatcaatttctttatttattaaccgacttaaatagtattcatatgtgtcgagagcgtaggatatttaggttccaaaactgaaaagataattgaactaagccggttattatgactaaatttactcaatagtttttatttagcctattaaaaccagacggtatttgtttttatataatattcgaatttaatatttctggtatttctgtgtcagaacataatgtagctcacgaaagctatagaatcaataattacagaaaatacatcctttcaaagtaggcactgaaaatatattaccggtatttaatataaacttttgcggttggaaaaacgtagcaatttcccagtaaatattttcaatattgtgtttatgaacatacttctgaagttctttcattttatgtgatataaacaatatcagactaagttgatttcaagaaaaatattaaaaatgaactcctgaaatctggcgtttggtgagtttTAAA------A-TT-CATTATCAA---AT----GAATGAAATACAGACAGTTGAACTGAGCTAGT--ATT--aaaatataatcccatatctccaagaagccgcctgcagagcagcgctttgatt
gi|35 : aAT------AATTTT-GCATTAAAT---TTTGCAGTTCG----CAAAAA--C-CTG--GCGATA-TCT-TTAAttcgctcgaaaaggttaacgatgtcc
gi|36 : T--ATG-A--------------G---------CACATGGA-T------T-T-----------G-A--TTC-AATGC-TGCTT-GGAGTAGAGTTTTGAcg
gi|4 : TGTCGACTAAGGAACAGATGTAAGA-CA-TG--G-T-GGT-TTTGG---CAAACGCA-----GTT-TT--T-G----AGAAAG-GGTAGCTG---GTTGGGA--ATCTTAG----CGTCGTTAT-----TTAT-TAA--------------TGTT---------TA--TATGTT-T-----A----GAAAT--A--TTA----C-A-A-----T-------------------T--TC------TA---------GTTA---A-TGAAAA--TATA-ATTAAA------A-CT-CATTATTCA---AT----GAATTAGATACAGACAGTTAAACTGACCTGGT-CATT--GCGATTATATTTCATATT--------TACACAAT---ATCTAT--CGCTCG-------A--A-AAGCATGCTG-GTACC--TT---TAAT-TTTTT----T----AATTATG-ATTCGAT-----TTT-A----TATGT----TT--TATATTTCTGCGTATGAATCATAGTGTTGTTCTATGGAAGA------CAAAGTTATTGAAAA-TCAATCAAG-AATTTCAGGAGTTACAAC-CTTT-C-----ACT---A----TACG-AAC-TGAAAATATATAG----TATTTC-ACATTGAAT---TTTACGGTTGG----AAAAAAACC-T-G--GCAGTGCCCC-TTAAGTATA-TTATTT-T-AATTTTGAT-TTTATTT-AT----ATA--AGTA--T--A--A-TGCTGAAATTATGTAGTTTTATGTG---T-TATTTACAT--AA----TCAAACTTGGATAATTTAAACACAAAAAAAAGACTACTGAAATCTGACTT---T-----------------TT--GTG-AAATTTAATCTTGGTG---------TA---GAA-G------T-TTTAA-------A-A--CTC-AATGC-TGCTTAGGAGT
gi|5 : ttgtaacacatattttcactgtgtaaaagggagtactcagtttGATGTAA-A-----G--G-C-GTA-ACTGA---TA----------------T--T-T-T--AGAAAC-GGTAGATG---GCGATGC--ATATTAA----CTGGTTT---------------------T-TAATATTGAG---------TA--TATGTT-T-----A----GAAAG--C--TGA----A-G-A-----TATCTT------G-T-----T--TT------CG---------A--A---ACTGAAAA--GATA------------------CATTATCAA---AT----GAATGAGATACAGACATTTAAAGTGAGCTGGTACATT--TCGCTCA------A-Atg
gi|5 : tttaaaagaaatataaatttgatatgcgagcataatgcactatatgcatacaatggccagtctacgtaatttgcctggcgctgaataccagtccaagttgtgctgggcgggtttattctgaaaaatagtGCTCAAAAAAAAC------T---GTTATTGAAAA-TCGA---AC-AATTATAGAAGCTACA-TTCTTT-C-----GGA---T----TACG-TCC-TTAAA-TAAAT------TATTTT-GCATTAAAT---TTTGTTGTTGG----AAAAAC--C-C-G--GCGGTACGCC-TTAAC---A-CT--TG-T-A----TACA-TTAATTT-AT----ATA--AATA--T--A--A-TGCTGACGTTCTGTAGCTGTATGTG---T-TATAAACAC--AA----TCAAATTCGAATAATTTGAGAAC-----AAaaaaactgttattgaaaatcgaacaattatagaagctacattctttcggattacgtccttaaataaattattttgcattaaattttgttgttggaaaaacccggcggtacgccttaacacttgtatacattaatttatataaatataatgctgacgttctgtagctgtatgtgttataaacacaatcaaattcgaataatttgagaacaattctaaattatggagatttaagaaaaaaaaacaaaaactaccgaaatctgattcttgggaatttttaatcttggagcagaattttaaaaactcgatgctgcttagagtagagttttaaagaatatctgacctacttct
gi|5 : tttaaaagaaatataaatttgatatgcgagcataatgcactatatgcatacaatggccagtctacgtaatttgcctggcgctgaataccagtccaagttgtgctgggcgggtttattctgaaaaatagtgatgtaaaggcgtaactgatattttagaaacggtagatggcgatgcatattaactggtttttaatattgagtatatgtttagaaagctgaagatatcttgttttcgaaactgaaaagatacattatcaaatgaatgagatacagacatttaaagtgagctggtacatttcG--A--A--C--A--A-TTCTAAA-TTATGGAGATTTAAGAA---AAAA-AAACAA--AAACTACCGAAATCTGATTCTTGGGA----------A---TTTTTAA------------T-----------------CT--TGG-A--------------G---------CA---GAA-T------T-TTAAA-------A-A--CTC-GATGC-TGCTT-AGAGTAGAGTTTTAAAttctaaattatggagatttaagaaaaaaaaacaaaaactaccgaaatctgattcttgggaatttttaatcttggagcagaattttaaaaactcgatgctgcttagagtagagttttaaagaatatctgacctacttct
gi|6 : tttaaaagaaatataaatttgatatgcgagcataatgcactatatgcatacaatggccagtctacgtaatttgcctggcgctgaataccagtccaagttgtgctgggcgggtttattctgaaaaatagtgatgtaaaggcgtaactgatattttagaaacggtagatggcgatgcatattaactggtttttaatattgagtatatgtttagaaagctgaagatatcttgttttcgaaactgaaaagatacattatcaaatgaatgagatacagacatttaaagtgagctggtacatttcgctcaaaaaaaactgttattgaaaatcgaacaattatagaagctacattctttcggattacgtccttaaataaattattttgcattaaattttgttgttggaaaaacccggcggtacgccttaacacttgtatacattaatttatataaatataatgctgacgttctgtagctgtatgtgttataaacacaatcaaattcgaataatttgaAAGTGATGCAAAGTAAGCGGCTGGTGTAA-A-TA-TG--A-C-AAT-ACTGT---TAAATTTA-----GTT-TT--T-T-C--TGAAAG-GATAGCTG----CAACTC--ATATTTA----TTTCTTTAT-----TTAT-TTACCAATTT-TAATAACGTT---------AA--TATATT-T-----A----GAAAA--A--TCA----A-G-A-----T-----------G-T-----T--TC------CG---------A--A---ACTGAAAA--GATA-ATTAAG------A-TC-CATTATCAA---GT----GAATGAGGTACAGGCAGTTAAACTGAGCTGGT-CATT--GCAATTA------A-ATT--------TACACAAT---ATTTTT--TACTTG---G---A--A-AAACCTGACG-GTACCCTTT---TAAC-TTTAC----C----ATTTATT-ATTTGAT-----TTT-A-A--AATTG----CT--TATGTTTCTATGTAAGAAACATAATGGAGTTCTGGTAAAGCTTAGTATAAAGTTATTGAAAA-TCGACCAAG-AGTAATAGAAGATACA-C-CTTT-C-----AAA---A----TATG-AAC-TGAAAATGTAT------CATTTT-GCATTAAAT---GTTTCCGTTGG----GAAAAA--C-A-G--TTGGTACCCC-TTAAA---A-CC--TT-T-A----CACT-TTTATTT-AT----ATG--A--A--T--A--A-TAATAAAGTTCTGTGGTTTTATGTGTCAGATATAAACAA--AA----TCAAAATCTGATAATTTGAAAAC-----AAA---TAATAAA----GA------T-----------------CT--GTG-A--------------G---------TA---AAA-T------T-ATGAA-------A-A--CTC-AATTC-TGATT-GG---AGAATTTTGAAgaatatctgacctacttct
gi|7 : T--T-T-G--AGAAAAAGGTAGCTG---GCAGTGC--ATATATT----CTTCTTTAT-----ACAT-TAACCGATTT-TAATAATTTT---------TA--TATGTTGT-----ATGTTGAAAGAAC--TTA----AAG-A-----TTAAAATATTTTG-T-----T--TT------CA---------A--A---ACGGAAAA--GAAA-ATTAAG------A-TAATATTATTAAGGAATTTAGGAATGAGATACATACAGTTAAG-------------TT--GCGATTA------A-AAT--------TATACACT---ACGTTT--TGCTT--------A--ATAAACCTTGCG-GTACT-TTT---TAAC-TTTCTTTCTC----ATTTATA-ATTGGAT-----ATT-A-A--TATAA----TT--TATATTTCTATGTAAGGTATATAACGTAGTTCCAGGAAAGC------TAAAATTATTAGAAA-TCGTTCAAC-AATTACGGAA-ATAAA-C-TTTT-C-----AAA---A----TACT-CCC-TTAAAA---GT------T-TTTC--CATTAAA----TTTGCGATTGG----AAAAGT--C-T-G--GCGGTACCCA-TTTAA---T-TA--TT-T------TAGC-TTTATTT-AT----ATG--A--C--T--ATTA-TGCTCAGGTTCCATAGTATAATA-G---AATGTTAACAATTAA----TGACAAAC-GATAA
gi|8 : ta-T-T--AGAAAT-GGTA-CTG---GTTGTGA--ATAT-AA----TTTCTTT-T-----TTGT-TAACAGATTC-GAACAATGCT---------TA--TATGAT-T-----A----GAA-G--C--TTA----A-G-A-----T-----------A-T-----T--TTATTTTTTG---------A--A---ACTGAAAA--GATA-ATAAAA------A-TA-AATCATCAT---AT----GAGTGAGATACTGACAATTGAACTGAGTTGGT-C-------GATCA------A-ATT-------------------A-------CGCTTG---A---A--A-AAAT-TGACG-GTACCCTTT----AAC-TTT-------------------ATTTGAT-----TTT-A-A--TATTC----TT--TATATAACTATGTAAGAAACATAATTTAGTTCT-GAAAAGC------TTAAGTCATTGAAAA-CCAATAAAA-AATTATTGAAGATACATC-CTTT-C-----AAA---A----TATG-TAC-TGAAAATATAT------GATTTC-ACAT-----------------------AAAATA--C-CTA--GCAGTA-CCC-TTAAA---A-TA--TT-T-A----TACT-TTCATTT-AT----ATG--A--ATGT--A--A-TGCTGAAGTTTTGTACTTTTATG-A---GATAT-GATAT--AA----TTATAACTGAATAA-TTGAAGAC-----AAA---TAATAAA----GA------TGGA--------------CTA-CTG-A------------------------------AA-TCTGACAC-TTGGA-------A-ATTTTT-AATGCAT------GAGTAGAATTTTGAAgatactactgatactactattgatactactgaaatctgactctcaaatttcaatattgaagtatagttatggaaac
gi|9 : -----GTT-TA--T-T-C--AGAAAA---TATGTA---GGGGTTT--ATATTAA----CATCTTTGTCAATTTTGT-TAACCGATTT-TAATAATGTT---------CA--TATGTT-T-----A----GAAAG--C--TGA----A-T-ATATCTT-----------G-T-----T--TT------CG---------A--A---ACTGAAAA--GATA-ATTAAA------AGTC-CATTATCAA---AT----AAATAAGATACACACATTTaattcaattcttcttggaacagagttttgaaaaat
gi|9 : ----C----ATTTATT-ATTCAAT-----TTTGA-A--CATTC----TT--TATATGTCTA-GTTC-AAACATAATGTAGTTCTAGGAAAGC------TAAAGTTATTGAAAA-TAGATCAAG-ACTGACAGAAGGTACA-C-CTattattcaattttgaacattctttatatgtctagttcaaacataatgtagttctaggaaagctaaagttattgaaaatagatcaagactgacagaaggtacacctgaagtctttatattttaatttatatgaatataatgctgaagttttgtagttttatgtgatataacaaaatcaaattcagatgattggaagacaaataataaagttggactactgaaatttgaatctagggaattttcaattgttgagtagaattttgaaaactcgatgcaacttggagaagatttttgaaaaatgtcttaatctacttttccgtcaccatcccaagacttttagcgctcacagtgctttgattaaatattggacaaattagtaaaaatgc
gi|9 : gtttattcagaaaatatgtaggggtttatattaacatctttgtcaattttgttaaccgattttaataatgttcatatgtttagaaagctgaatatatcttgttttcgaaactgaaaagataattaaaagtccattatcaaataaataagatacacaGGTACACC-T-GAA---G-TC--TT-T-A----TATT-TTAATTT-AT----ATG--A--A--T--ATAA-TGCTGAAGTTTTGTAGTTTTATGT----GATAT-AACAA--AA----TCAAATTCAGATGATTGGAAGAC-----AAA---TAATAAA----G--------------------------T--TGG-A--------------C---------TACT-GAA-A------T-TTGAATCTAGGGA-ATTTTC-AAT---TGTT---GAGTAGAATTTTGAAgaagtctttatattttaatttatatgaatataatgctgaagttttgtagttttatgtgatataacaaaatcaaattcagatgattggaagacaaataataaagttggactactgaaatttgaatctagggaattttcaattgttgagtagaattttgaaaactcgatgcaacttggagaagatttttgaaaaatgtcttaatctacttttccgtcaccatcccaagacttttagcgctcacagtgctttgattaaatattggacaaattagtaaaaatgc
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TGATGTTGCGTAACTAAACTTCATTTGACTGGTTCATTTTACTTCCTGTTCGAAAAAGTACGAATACTGTCAACTGTATGCAGGCTATTGTGTTAGTGATGCAAAGTAAGGAAAATGGGTAAAACATATA
Unaligned ( gi|29 ): TCCGGTCATTTTGTAACCAAGTCATTTCGTAACTGCGTTTTTGGTCATTTCGTAACAGGTTTGAACTGTTGGATAATGTCGTAACCACTTTTTAGGTC
Unaligned ( gi|30 ): TCCGGTCATTTCGTAACCAAGTCATTTCGTAACTGTTTTTTTTTTGGTCGTTTCGTAACCATTTTTTCAGTCATTTCGTAACCACTT
Unaligned ( gi|31 ): TCTGGTCATTTCGTAACCAAGTCATTTTGTAACTGTTTTTTTTGGTCGTTTGTAACTATTTTTTCGGTCATTTCGTAACCAC
Unaligned ( gi|32 ): CTGTCATTTCGTAACCAAGTCATTTCGTAACCAAGTCTTTTCGTAACCCGTTTAAAATGTTGGTCAATCCGTAACCATATTT
Unaligned ( gi|34 ): TAACCAAGTCATTTCGTAACCGGGTTTTTTTTTCGGTCGTTTCGTAACCATTTTTTCGTTTTTTTACGAAATGACCG
Unaligned ( gi|37 ): GCACAAACACCACTGGACTGGTTCACTCCACTTCCTGT
Unaligned ( gi|38 ): TGAAGACAAATAATAAAGATGGACTACTGAA