lowQualScore : 111111 888888888888888888888888888888888888
lowQualScore : 2 2 000000 88 22 222222222222222222222222222222222222 2 99
lowQualScore : . . ...... .. .. .................................... . ..
lowQualScore : 2 1 555555 99 44 999999999999999999999999999999999999 1 33
consensus : TTCACA-AAGGGAAA-CAAAT------CA-GTT-GGA--N----TAT---ATT---CTA----A---A-A---GA-AAA-NTGAGTTATTTCCCTTACATT
Reference ( gi|6 ) : TTCACA-AAGGGAAA-CAAAT------CA-GTT-GGA--A----TAC---ATT---CTA----A---A-AT--GA-AAA-TTGAGTTATTTCCCTTACATT
gi|13 : TTCACA-AAGGGAAA-CAAAT------CA-GTT-GGA--T----TGTTTAATT----TA----A---A-A---GT-AAA-TGAAGTTATTTCCCTT
gi|14 : TTCACA-AAGGGAAA-CGAAA------AA-GTT-GGA--A----TTC----TT---ATA----A---A-----GATAAA-CTGAATTATTTCCCTT
gi|12 : ttTTCACC-AAGGGAAA-CAAAT------TG-GTT-AGA--T----TAT---A-------A----A---A-ATAGGA-AAACCTGAGTTATTTCCCT
gi|4 : ttTTCA-A-AAGGAAAA-CAAAT------CA-GTT-AGA--T----TAT----TT---TT---------A-AT--CA-A----TGAGTTATTTCCCTTc
gi|9 : TCCACA-AAGGGAAA-TAAAT------TA-GTT-AGATCA----TAC---A-A---CTA----T---A-G---GA-AAG-CAGAGTTATTTCCCTTcactcaattttaaacatc
gi|2 : tcTCACA-AAGGGACA-CAAAT------CA-CTT-TAA--A------C---TTT---TTA----ATTAA-GG--GG-AAA-CTTAGTTATTTCCCTTACACT
gi|11 : gacaCACA-AAGGGAAA-CAAAT------TA-TTT-AGG--A----CA----AT-----TA----A----------A-AAG-TCGAGTTGTGTCCCTTACATTataaaa
gi|1 : CACAGAAGGGAAA-CAAGT------CATTTT-TGA--C----TATTTAATT---TTA----A---A-G---GT-CGT-TTGAGTTATTTCCCTTCCATTataaa
gi|5 : aaacaagcacCACA-AAGGGAAA-CAAAT------CA-TTT-TGA--A-----AT---ATTTACCTG----A---A-AG--GA-AAA-ata
gi|19 : ACA-AAGGGAAA-CAAAT------TA-GTT-GGC--T----TAT---A------TA----A---A-AA--AA-AAT-TTAAGTTATTTCCCactattccctccccttaattatgata
gi|7 : tttaaACA-AAGGGGAAGCAAGT------CG-ATT-GAA--T----TATTTAATA---CGA----A---A-A---GA-AAA-CTGAGTTATTTCCCTTCCAT
gi|15 : tA-AAGGGAAA-CAAAT------CA--TT-TGA--A----TA----ATT----TATCAGG---A-AC---A-AAA-CTGAGTTATTTCCCTTGCAT
gi|16 : A-AAGGGAAA-CAAAT------CATATT-GGA--T----T-----ATTAAGCTA----A---ACAG--GA-AAA--TGAGTTTCTTCCCTT
gi|18 : -AAGGGAAA-TAAAT------CATGTT-GGA--AAATTTAC---------CTA----A---A-AA--GA-AAA-ATGATTTCTTTCCCTTAgt
gi|3 : t-AAGGGACA-CAAAT------CA-ATTTAGA--T----TTT---ATT----TA----A---A-AA--GA-AAA-TTGACTTACTCCCCTTACAT
gi|17 : cactac-AAGGGAAA-CAAATCATG--CA-GTT-GGG--G---------------------------------GA-AAA-ATGAGTTATTTCCCTTACATTcataaaaa
gi|8 : catc-AAGGGAAA-CAAATTACATGTA-GTT-GGA--A------------------A----A---A-ATTAGA-AAA-GTAAGTTATTTCCCTTatac
gi|20 : catc-AAGGGAAA-CAAAT------CG-TTT-AAG--A----T-T---ATTTA-TTA----C---A-----GA-AAC-ACAAGTTATTTCCCTTTCAtaattac
gi|10 : gAGGGAAA-CAACT------TA-ATT-GGC--T----TACT--ATC---TTA----G---A-GT--GG-AGA-ACAAGTTATTTCCCTTATATT
Alignments
lowQualScore : 1111111 33333333333
lowQualScore : 2 2 1111111 5555 1 2 44444444444 22 2 999 77
lowQualScore : . . ....... .... . . ........... .. . ... ..
lowQualScore : 1 0 7777777 3333 0 0 99999999999 88 0 555 77
consensus : TTCACA-AAGGGAAA-CAAATCA------GTT--G-GANTA-T---AT-T---CTAA--A-A---GAAAA-NTGAGTTATTTCCCTTACATT
Reference ( family-868 ) : TTCACA-AAGGGAAA-CAAATCA------GTT--G-GANTA-T---AT-T---CTAA--A-A---GAAAA-NTGAGTTATTTCCCTTACATT
gi|1 : CACAGAAGGGAAA-CAAGTCA------TTT--TTGACTA-TTTAAT-T---TTAA--A-G---GTCGT-TTGAGTTATTTCCCTTCCATT
gi|10 : aaacaagcacAGGGAAA-CAACTTA------ATT--G-GCTTACT---AT-C---TTAG--A-GT--GGAGA-ACAAGTTATTTCCCTTATATTata
gi|11 : CACA-AAGGGAAA-CAAATTA------TTT--A-GGACA-----AT-T-----------A---AAAAG-TCGAGTTGTGTCCCTTACATTat
gi|12 : TTCACC-AAGGGAAA-CAAATTG------GTT--A-GATTA-T---A--------AA--A-ATAGGAAAACCTGAGTTATTTCCCTataaa
gi|13 : ttTTCACA-AAGGGAAA-CAAATCA------GTT--G-GATTG-TTTAAT-T----TAA--A-A---GTAAA-TGAAGTTATTTCCCTTc
gi|14 : TTCACA-AAGGGAAA-CGAAAAA------GTT--G-GAAT--T---CT-T---ATAA--A-G---ATAAA-CTGAATTATTTCCCTT
gi|15 : ttA-AAGGGAAA-CAAATCA------TTT--G-AATAA-T---TTAT---CAGG--A-A---CAAAA-CTGAGTTATTTCCCTTGCAT
gi|16 : A-AAGGGAAA-CAAATCAT-----ATT--G-GATTA-TT--AA-G---CTAA--ACA---GGAAA-ATGAGTTTCTTCCCTT
gi|17 : -AAGGGAAA-CAAATCA--------T--G-CAGT--------------TGG--G-G---GAAAA-ATGAGTTATTTCCCTTACATTgt
gi|18 : catc-AAGGGAAA-TAAATCAT-----GTT--G-GAAAA-T----T-TAC-CTAA--A-AA--GAAAA-ATGATTTCTTTCCCTTAatac
gi|19 : tACA-AAGGGAAA-CAAATTA------GTT--G-GCTTA-T---A-------TAA--A-A---AAAAATTTAAGTTATTTCCC
gi|2 : tttaaTCACA-AAGGGACA-CAAATCA------CTT--T-AAACT-T---TT-TAA-TTAA--G-G---GGAAA-CTTAGTTATTTCCCTTACACT
gi|20 : gaca-AAGGGAAA-CAAATC-------GTTTAA-GATTA-T----T-T---ATTA--C-A---GAAAC-ACAAGTTATTTCCCTTTCAataaaa
gi|3 : g-AAGGGACA-CAAATCA------ATTT-A-GATTT-T---AT-T---TAAA--A-A---GAAAA-TTGACTTACTCCCCTTACAT
gi|4 : cactacTTCA-A-AAGGAAAA-CAAATCA------GTT--A-GATTA-T----T-T---TTAATCA-A----------TGAGTTATTTCCCTTcataaaaa
gi|5 : CACA-AAGGGAAA-CAAATCA------TTT--T-GAA-A-T---AT-TTACCTGA--A-A---GGAAA----AACTATTCCCcactcaattttaaacatc
gi|6 : TTCACA-AAGGGAAA-CAAATCA------GTT--G-GAATA-C---AT-T---CTAA--A-AT--GAAAA-TTGAGTTATTTCCCTTACATTtccccttaattatgata
gi|7 : ACA-AAGGGGAAGCAAGTCG------ATT--G-AATTA-TTTAAT-A---CGAA--A-A---GAAAA-CTGAGTTATTTCCCTTCCAT
gi|8 : t-AAGGGAAA-CAAATTACATGTAGTT--G-GAAAA-A---AT-T-----------A---GAAAA-GTAAGTTATTTCCCTT
gi|9 : catcTCCACA-AAGGGAAA-TAAATTA------GTT--A-GATCA-T---ACAA---CTAT--A-G---GAAAG-CAGAGTTATTTCCCTTtaattac
Alignments
lowQualScore : 1111111 33333333333
lowQualScore : 2 2 1111111 5555 1 2 44444444444 22 2 999 77
lowQualScore : . . ....... .... . . ........... .. . ... ..
lowQualScore : 1 0 7777777 3333 0 0 99999999999 88 0 555 77
consensus : TTCACA-AAGGGAAA-CAAATCA------GTT--G-GANTA-T---AT-T---CTAA--A-A---GAAAA-NTGAGTTATTTCCCTTACATT
Reference ( family-868 ) : TTCACA-AAGGGAAA-CAAATCA------GTT--G-GANTA-T---AT-T---CTAA--A-A---GAAAA-NTGAGTTATTTCCCTTACATT
gi|1 : CACAGAAGGGAAA-CAAGTCA------TTT--TTGACTA-TTTAAT-T---TTAA--A-G---GTCGT-TTGAGTTATTTCCCTTCCATT
gi|10 : aaacaagcacAGGGAAA-CAACTTA------ATT--G-GCTTACT---AT-C---TTAG--A-GT--GGAGA-ACAAGTTATTTCCCTTATATTata
gi|11 : CACA-AAGGGAAA-CAAATTA------TTT--A-GGACA-----AT-T-----------A---AAAAG-TCGAGTTGTGTCCCTTACATTat
gi|12 : TTCACC-AAGGGAAA-CAAATTG------GTT--A-GATTA-T---A--------AA--A-ATAGGAAAACCTGAGTTATTTCCCTataaa
gi|13 : ttTTCACA-AAGGGAAA-CAAATCA------GTT--G-GATTG-TTTAAT-T----TAA--A-A---GTAAA-TGAAGTTATTTCCCTTc
gi|14 : TTCACA-AAGGGAAA-CGAAAAA------GTT--G-GAAT--T---CT-T---ATAA--A-G---ATAAA-CTGAATTATTTCCCTT
gi|15 : ttA-AAGGGAAA-CAAATCA------TTT--G-AATAA-T---TTAT---CAGG--A-A---CAAAA-CTGAGTTATTTCCCTTGCAT
gi|16 : A-AAGGGAAA-CAAATCAT-----ATT--G-GATTA-TT--AA-G---CTAA--ACA---GGAAA-ATGAGTTTCTTCCCTT
gi|17 : -AAGGGAAA-CAAATCA--------T--G-CAGT--------------TGG--G-G---GAAAA-ATGAGTTATTTCCCTTACATTgt
gi|18 : catc-AAGGGAAA-TAAATCAT-----GTT--G-GAAAA-T----T-TAC-CTAA--A-AA--GAAAA-ATGATTTCTTTCCCTTAatac
gi|19 : tACA-AAGGGAAA-CAAATTA------GTT--G-GCTTA-T---A-------TAA--A-A---AAAAATTTAAGTTATTTCCC
gi|2 : tttaaTCACA-AAGGGACA-CAAATCA------CTT--T-AAACT-T---TT-TAA-TTAA--G-G---GGAAA-CTTAGTTATTTCCCTTACACT
gi|20 : gaca-AAGGGAAA-CAAATC-------GTTTAA-GATTA-T----T-T---ATTA--C-A---GAAAC-ACAAGTTATTTCCCTTTCAataaaa
gi|3 : g-AAGGGACA-CAAATCA------ATTT-A-GATTT-T---AT-T---TAAA--A-A---GAAAA-TTGACTTACTCCCCTTACAT
gi|4 : cactacTTCA-A-AAGGAAAA-CAAATCA------GTT--A-GATTA-T----T-T---TTAATCA-A----------TGAGTTATTTCCCTTcataaaaa
gi|5 : CACA-AAGGGAAA-CAAATCA------TTT--T-GAA-A-T---AT-TTACCTGA--A-A---GGAAA----AACTATTCCCcactcaattttaaacatc
gi|6 : TTCACA-AAGGGAAA-CAAATCA------GTT--G-GAATA-C---AT-T---CTAA--A-AT--GAAAA-TTGAGTTATTTCCCTTACATTtccccttaattatgata
gi|7 : ACA-AAGGGGAAGCAAGTCG------ATT--G-AATTA-TTTAAT-A---CGAA--A-A---GAAAA-CTGAGTTATTTCCCTTCCAT
gi|8 : t-AAGGGAAA-CAAATTACATGTAGTT--G-GAAAA-A---AT-T-----------A---GAAAA-GTAAGTTATTTCCCTT
gi|9 : catcTCCACA-AAGGGAAA-TAAATTA------GTT--A-GATCA-T---ACAA---CTAT--A-G---GAAAG-CAGAGTTATTTCCCTTtaattac
blockSeqs : . G CATGTAG TAA T C ATTTACC TC C TAG CC
blockSeqs : . . TA TA A . TTAATAC . . T TT
blockSeqs : . . TG G T . TTAATT . . A A
blockSeqs : . . A A T . TTTAAT . . T T
blockSeqs : . . T A A . TTATC . . . T
blockSeqs : . . G G T . TAAGC . . . C
blockSeqs : . . G G T . TTACC . . . C
blockSeqs : . . G G G . ACAAC . . . A
blockSeqs : . . T G A . ATCT . . . A
blockSeqs : . . G G T . CTTA . . . A
blockSeqs : . . C G A . ATTT . . . C
blockSeqs : . . G G T . ATTC . . . A
blockSeqs : . . A T T . ATT . . . T
blockSeqs : . . G A T . TTA . . . T
blockSeqs : . . T T A . TTT . . . C
blockSeqs : . . G G A . ATT . . . G
blockSeqs : . . A G T . A . . . C
blockSeqs : . . G G A . A . . . .
blockSeqs : . . A T . . . . . .
blockSeqCons : G*** ATT********
originalCons : TTCACA-AAGGGAAA-CAAATCA------GTT--G-GANTA-T---AT-T---CTAA--A-A---GAAAA-NTGAGTTATTTCCCTTACATT
finalCons : TTCACA-AAGGGAAA-CAAATCA------GTTG---GANTA-TATT--------TAA--A-A---GAAAA-NTGAGTTATTTCCCTTACATT
Alignments
lowQualScore : 1111111 3333333333333333333333333333333333333
lowQualScore : 2 2 2222222 222 4444444444444444444444444444444444444 2 77 2
lowQualScore : . . ....... ... ..................................... . .. .
lowQualScore : 1 0 9999999 666 0000000000000000000000000000000000000 0 77 0
consensus : TTCACA-AAGGGAAA-CAAATCA------GTT-G-GAN---TA-T---AT--T-TA-----A------A-A---GA-AAA-NT-GAGTTATTTCCCTTACATT
Reference ( family-868 ) : TTCACA-AAGGGAAA-CAAATCA------GTT-G-GAN---TA-T---AT--T-TA-----A------A-A---GA-AAA-NT-GAGTTATTTCCCTTACATT
gi|1 : CACAGAAGGGAAA-CAAGTCA------TTT-TTGAC---TA-TTTAAT--T-TT-----A------A-A---GG-TCG-TTTGAGTTATTTCCCTTCCATT
gi|10 : aaacaagcacAGGGAAA-CAACTTA------ATT-G-GCT---TACT---ATC-T-TA-----G------A-GT--GG-AGA-AC-AAGTTATTTCCCTTATATTata
gi|11 : CACA-AAGGGAAA-CAAATTA------TTT-A-GGA---CA-----AT--T-AA-----A------A-A---G------TC-GAGTTGTGTCCCTTACATTat
gi|12 : TTCACC-AAGGGAAA-CAAATTG------GTT-A-GAT---TA-T---A------A-----A------A-ATAGGA-AAACCT-GAGTTATTTCCCTataaa
gi|13 : ttTTCACA-AAGGGAAA-CAAATCA------GTT-G-GAT---TG-TTTAAT--T-TA-----A------A-A---GT-AAA-TG-AAGTTATTTCCCTTc
gi|14 : TTCACA-AAGGGAAA-CGAAAAA------GTT-G-GA-----A-T---TC--T-TAT----A------A-A---GATAAA-CT-GAATTATTTCCCTT
gi|15 : ttA-AAGGGAAA-CAAATCA------TTT-G--AA---TA-----AT--T-TATCAG-G------A-A---CA-AAA-CT-GAGTTATTTCCCTTGCAT
gi|16 : A-AAGGGAAA-CAAATCAT-----ATT-G-GAT---TA-TTA-AG--C-TA-----A------ACA---GG-AAA-AT-GAGTTTCTTCCCTT
gi|17 : -AAGGGAAA-CAAATCA--------T-G-CAG---T------------TG-----G------G-G---GA-AAA-AT-GAGTTATTTCCCTTACATTgt
gi|18 : catc-AAGGGAAA-TAAATCAT-----GTT-G-GA-----A-A---AT--T-TACCTAAA------A-A---GA-AAA-AT-GATTTCTTTCCCTTAatac
gi|19 : tACA-AAGGGAAA-CAAATTA------GTT-G-GCT---TA-T---A-----TA-----A------A-A---AA-AAATTT-AAGTTATTTCCC
gi|2 : tttaaTCACA-AAGGGACA-CAAATCA------CTT-T-AAACTTTT-T---AA--T-TA-----A------G-G---GG-AAA-CT-TAGTTATTTCCCTTACACT
gi|20 : gaca-AAGGGAAA-CAAATCG------TTT-A-AGA---T--T---AT--T-TATT---A------C-A---GA-AAC-AC-AAGTTATTTCCCTTTCAataaaa
gi|3 : g-AAGGGACA-CAAATCA------ATTTA-GAT---TT-T---AT--T-TA-----A------A-AA--GA-AAA-TT-GACTTACTCCCCTTACAT
gi|4 : cactacTTCA-A-AAGGAAAA-CAAATCA------GTT-A-GAT---TA-T---TT--T-TA-----ATC----A-A-----------T-GAGTTATTTCCCTTcataaaaa
gi|5 : CACA-AAGGGAAA-CAAATCA------TTT-T-GAA----A-T---AT--T-TACCTG-A------A-A---GG-AAA-----AACTATTCCCcactcaattttaaacatc
gi|6 : TTCACA-AAGGGAAA-CAAATCA------GTT-G-GAA---TA-C---AT--TCTA-----A------A-AT--GA-AAA-TT-GAGTTATTTCCCTTACATTtccccttaattatgata
gi|7 : ACA-AAGGGGAAGCAAGTCG------ATT-G-AAT---TA-T-------T-TA-----ATACGAAA-A---GA-AAA-CT-GAGTTATTTCCCTTCCAT
gi|8 : t-AAGGGAAA-CAAATTACATGTAGTT-G-GAA---AA-A---AT--T-----------------A---GA-AAA-GT-AAGTTATTTCCCTT
gi|9 : catcTCCACA-AAGGGAAA-TAAATTA------GTT-A-GAT---CA-T---ACAAC-TA-----T------A-G---GA-AAG-CA-GAGTTATTTCCCTTtaattac