lowQualScore : 444444 11 11 555555555555555 333 11 66666666666666666666 1111111 1 1111111 1 333333333 1 1 33333333
lowQualScore : 6 000000 11 44 666666666666666 1 000 0 00 22 99999999999999999999 888 8888888 2 2222222 6 0 0 0 888888888 2 5 0 5 0 66 5 4 66 4 7 66 55555555 5 6
lowQualScore : . ...... .. .. ............... . ... . .. .. .................... ... ....... . ....... . . . . ......... . . . . . .. . . .. . . .. ........ . .
lowQualScore : 0 333333 33 33 000000000000000 0 333 8 00 88 55555555555555555555 333 5555555 2 0000000 7 3 2 6 888888888 0 7 6 0 0 99 0 1 99 5 1 99 44444444 7 0
consensus : NNNNNAAGCAANAT---GANTTATTCTTTTATTATA----AT--CAT--ANACACATANATATAANCATAATAAAG---------TACACGTA--NACAA-A-CGTACATGG-C-ATTTCAACAATTA-G---A-ATTACAAGAGACTATTATCACAAATAGGACAATAATATCACA-----T---ACGCTTATATC-ACAAAGGTA-AATAC-AC--A-AAATATTACGTT--AATTATAGGACCTTGATATTTCGTCATCAAACGTCGCACCTATACCTCCGTTTATCACCATGT--TAT-NGC-CAAA-TGAGCGCCG
Reference ( gi|1 ) : TGTTTAAATAACAT---GATGTATTATTTTATTATA----ATATCATCCATATACATAAGCATAAACACAATAAAA---------TATATATA--AACAA-A-TGTACATGG-C-ATTTCAACTATTA-G---A-ATTACAAGAGACTATTATCACAAATAGTACAATAATATCACA-----A---ACGCTTATATC-ACAAAGTTA-AATAC-AC--A-AAATATTACATT--AATTATAGGACCTTGATATTTTGTCATCAAACGTCGCACCTATACCTCCGCTTATCACCATGT--TAT-TGCACGAA-TGAGTGCCG
gi|2 : AAGCAAC-----GATTTATTCATTTATTATAGTCTATAGTATACACACACATACATATAATTATGATATAA----------ACATGTA--CACAA-A-CGTACACGG-CCATTT-AACAATAA-G---A-ATTGCAAGAGACTATAATCACAAATACGACAACACTATCACA-----T---ACGC-TATGAC-ACAAAGGTA-AATACAAC--A-ATACAATACGTT--AATTATAGGACCTTGATATTTCG
gi|6 : atattacatgctataAAACAAGATTTAGACTTATTCTTTCATTATA----ATCTCATCAAGACACATAGATACACACATAATAAAGCCGTAAACTTACCCATA--CACAATA-TGTCGATGGTC-ATT-CAAC-ATTAAG---A-ATTAAAAGAGACTATTATCACAAATAGGATAACACAAT--CA-----A---ATTCCTATAT
gi|3 : T---GAAGTAT-ATTTTATAATA----GT----T---TATACATAA----AACCATAATAAAG---------C---CA-A--AACA----CGTAAATGG-C-TATTCAACAATTA-ACATACATTTCAAGAGACTATTATCACAAATAGGTCAATAATACCAAA-----T---ATATTTTTAT--ATAA--CTATATTAC-GCTAA-AAATATTACATA--AGTTATGGAACAGTGAAATGTTTTCATCAAA-----CACCTATatacgcttatacgcttatatcac
gi|5 : tacgttacaaatATAAA-ACCATAAAA---------TATACACATTATCAA-AATATACATAG-T-TATTCTGTAATTA-G---A-ATTACAAGAGACTATCATTACGAATAGGACAATAATATCACATTCCTATATACGCTCATAGCAAAAAAATCA-AATATAAT--ATAAATATTAC-TTACAATTA
gi|4 : agtttataattctgataattaatttgttaactgctaattactaatataACAA-A-TGTACATGT-C-ATT-CAACTATCA-G---A-ATTGCAAGAGACTATTGTCACACATAGTACAATGATATCACA--------------TATATC-ACAAATGTA-AATAC-AC--A-AAATATTACATT--AGTGATAGGACATTTATATTTCGTCATCAAACGTCGCACCTATACCTCCGTTTATCACCATGT--TAT-GGTCCAAA-TGA
gi|16 : aattttgagagaaatgataggttacttAA-A-TGTACATTGTC-ATT-CAACTGT---G---A-ATTACAAGAGACT
gi|7 : TATCACA-----T---ACGCTTATATC-ACAAAGATT-GATAC-AC--A-AAATAGTCTATT--TAATATAGGACCTTGGTATTTCGTTATCAAACGTCACACCTACACCTTCGTTTATCACAATGT--C-------CGAA-TGAGC
gi|14 : ---ACGCTTATATC-ACAAAGGTA-AATAC-AC--A-AAATATTACGTT--AATTATAGGACCTTCATATGTCGTC
gi|8 : tCGCTTATACC-ACAAAGGTT-AATTC-AC--A-AAATATTACATT--AATCATAGGACCCGGATATTTCGTCAACAAACGTCACACCTACACCTCCGTTTATCACCATGT--TATATTC-CAAA-TGGACGCC
gi|9 : A-AATAC-AC--A-AAATATTACTTT--AATTAAAGGACCTTGATATTTCGTCATCAAACGCCGCACCTATACCTCCGTTTATCACCATGT--TAT-AGAGTAAA-TGAGC
gi|11 : AGGACCTTGATATTTCGTCATCAAACGACGCACCTATACCTCCGTTCATCACCATGT--TA--TACACAAAGTGAGCGC
gi|13 : GGTCCTTGATATGTCGTCATCAAACTTCGTATCTATACCTCCATTTATCGTCATGT--TAT-AGTCCAAA-TGAG
gi|10 : GGATCTTAAAATTTCTTCGTCTTAAGTTGCACCTCTACCCCAGAATATCACCATGTTATAT-TTC---AA-TGAACGCCG
gi|15 : GTCATCAAACGCCGCACCGTTACCTCCGTTTATCTCCATGT--TAcc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TTGATTTATTTATACATACATACACACACATACATGTAATTTGTATATGCTATGTACATGTAACACAAAGTACA
Unaligned ( gi|17 ): TCCGTTTCTCGCAAAGTCATGTTTCGATGAGCACCGCC
Alignments
lowQualScore : 222222 99999999999999999 444444444444444444 1 1 111 3333333333333 111 22222222 222222
lowQualScore : 0 555555 44 55 00000000000000000 0 8 4 1 0 8 111111111111111111 1 5 1 7 2 2 7 000 5 6666666666666 000 77 88888888 0 555 8 66 4 66 8 4 999999 4
lowQualScore : . ...... .. .. ................. . . . . . . .................. . . . . . . . ... . ............. ... .. ........ . ... . .. . .. . . ...... .
lowQualScore : 7 222222 00 88 88888888888888888 2 8 4 0 8 0 888888888888888888 0 7 4 1 0 1 6 000 7 7777777777777 000 99 66666666 2 777 9 11 4 11 2 4 444444 4
consensus : NNNNNAAACAANAT---GACGTATTNTTTTATTATAGT--CT-------ATC-ANACACATANATANAANCATAATA-AAG---------TACACAT-ANACAA-ATGTACATGG-CATTTCAACNATNAG---A-ATTACAAGAGACTATTATCACAAATAGGACAATA-------------ATAT---C--AC--------ATACGCTTATATCACAAAGGT-A-AATAC-AC--A-AAATA--TTACGT-TAATTATAGGACCTTGATATTTCGTCATCAAACGTCGCACCTATACCTCCGTTTATCACCATGTTAT-AG-C-CAAA-TGAGCGCCG
Reference ( family-820 ) : NNNNNAAGCAANAT---GANTTATTCTTTTATTATAAT--C--------AT--ANACACATANATATAANCATAATA-AAG---------TACACGT-ANACAA-ACGTACATGG-CATTTCAACAATTAG---A-ATTACAAGAGACTATTATCACAAATAGGACAATA-------------ATAT---C--AC--------ATACGCTTATATCACAAAGGT-A-AATAC-AC--A-AAATA--TTACGT-TAATTATAGGACCTTGATATTTCGTCATCAAACGTCGCACCTATACCTCCGTTTATCACCATGTTAT-NG-C-CAAA-TGAGCGCCG
gi|1 : AAATAACAT---GATGTATTATTTTATTATAATATC--------ATCCATATACATAAGCATAAACACAATA-AAA---------TATATAT-AAACAA-ATGTACATGG-CATTTCAACTATTAG---A-ATTACAAGAGACTATTATCACAAATAGTACAATA-------------ATAT---C--AC--------AAACGCTTATATCACAAAGTT-A-AATAC-AC--A-AAATA--TTACAT-TAATTATAGGACCTTGATATTTTGTCATCAAACGTCGCACCTATACCTCCGCTTATCACCATGTTAT-TG-CACGAA-TGAGTGCCG
gi|10 : tgtttGGATCTTAAAATTTCTTCGTCTTAAGTTGCACCTCTACCCCAGAATATCACCATGTTAT-AT-T-TCAA-TGAACGCCG
gi|11 : AGGACCTTGATATTTCGTCATCAAACGACGCACCTATACCTCCGTTCATCACCATGTTAT-AC-A-CAAAGTGAGCGCcc
gi|13 : GGTCCTTGATATGTCGTCATCAAACTTCGTATCTATACCTCCATTTATCGTCATGTTAT-AGTC-CAAA-TGAG
gi|14 : TACGCTTATATCACAAAGGT-A-AATAC-AC--A-AAATA--TTACGT-TAATTATAGGACCTTCATATGTCGTC
gi|15 : GTCATCAAACGCCGCACCGTTACCTCCGTTTATCTCCATGTTAC-AGTT-CAAA-GGAG
gi|16 : AA-ATGTACATTGTCATT-CAACTGT--G---A-ATTACAAGAGACT
gi|2 : AAGCAAC-----GATTTATTCATTTATTATAGT--CTATAGTATAC--ACACACATACATATAATTATGATATAA-----------ACATGT-ACACAA-ACGTACACGGCCATTT-AACAATAAG---A-ATTGCAAGAGACTATAATCACAAATACGACAACA-------------CTAT---C--AC--------ATACGC-TATGACACAAAGGT-A-AATACAAC--A-ATACA--ATACGT-TAATTATAGGACCTTGATATTTCG
gi|3 : atattacatgctataCAAATT---GAAGTAT-ATTTTATAATAGT--T-----------------TATACATAAAACCATAATA-AAG---------C-CA----AAACA---CGTAAATGG-CTATTCAACAATTAACATACATTTCAAGAGACTATTATCACAAATAGGTCAATA-------------ATAC---CAAAT--------ATATTTTTATATAAC-----T-ATATTAC-GCTAA-AAATA--TTACAT-AAGTTATGGAACAGTGAAATGTTTTCATCAAA-----CACCTAT
gi|4 : tacgttaACAA-ATGTACATGT-CATT-CAACTATCAG---A-ATTGCAAGAGACTATTGTCACACATAGTACAATG-------------ATAT---C--AC--------ATA------TATCACAAATGT-A-AATAC-AC--A-AAATA--TTACAT-TAGTGATAGGACATTTATATTTCGTCATCAAACGTCGCACCTATACCTCCGTTTATCACCATGTTAT-GGTC-CAAA-TGA
gi|5 : aattttgagagaaatgataggttacttATATA-ATAAAACCATAA-A-ATA---------TACACATTATCAAA-ATATACATAG-TTATTCTGTAATTAG---A-ATTACAAGAGACTATCATTACGAATAGGACAATA-------------ATAT---C--ACATTCCTATATACGCTCATAGCAAAAAAATCA-AATATAAT--ATAAATA--TTACTTACAATTA
gi|6 : agtttataattctgataattaatttgttaactgctaattactaAAACAAGATTTAGACTTATTCTTTCATTATAAT--CTC------ATCAAGACACATAGATACACACATAATA-AAGCCGTAAACTTACCCAT-ACACAATATGTCGATGGTCATT-CAACATTAAG---A-ATTAAAAGAGACTATTATCACAAATAGGATAACACAATCAAATTCCTATATATAC--GCTT------ATACGCTTATATCAC
gi|7 : TAT---C--AC--------ATACGCTTATATCACAAAGAT-T-GATAC-AC--A-AAATAGTCTAT-T-TAA-TATAGGACCTTGGTATTTCGTTATCAAACGTCACACCTACACCTTCGTTTATCACAATGT-------C-CGAA-TGAGCG
gi|8 : CGCTTATACCACAAAGGT-T-AATTC-AC--A-AAATA--TTACAT-TAATCATAGGACCCGGATATTTCGTCAACAAACGTCACACCTACACCTCCGTTTATCACCATGTTATATT-C-CAAA-TGGACGCC
gi|9 : -A-AATAC-AC--A-AAATA--TTACTT-TAATTAAAGGACCTTGATATTTCGTCATCAAACGCCGCACCTATACCTCCGTTTATCACCATGTTAT-AGAG-TAAA-TGAGCG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTGATTTATTTATACATACATACACACACATACATGTAATTTGTATATGCTATGTACATGTAACACAAAGTACA
Unaligned ( gi|17 ): TCCGTTTCTCGCAAAGTCATGTTTCGATGAGCACCGCC
Alignments
lowQualScore : 222222 55555555555555 3333333333 1 1 111 3333333333333 111 22222222 22222
lowQualScore : 555555 66 44 0 44444444444444 0 8 1 1 0 8 8888888888 0 0 88 1 5 1 5 2 1 6 000 5 6666666666666 000 77 88888888 0 0 555 4 4 66 4 66 8 4 66666 4
lowQualScore : ...... .. .. . .............. . . . . . . .......... . . .. . . . . . . . ... . ............. ... .. ........ . . ... . . .. . .. . . ..... .
lowQualScore : 222222 88 22 2 88888888888888 2 8 0 0 8 0 4444444444 8 6 88 0 7 4 7 0 0 6 000 7 7777777777777 000 99 66666666 8 2 777 4 4 11 4 11 2 4 99999 4
consensus : NNNNNAAACAANAT---GACGTATTNTTTTATTATAGTCTCAT------C-AN-ACACATANATANAANCATAATA-AAG---------TACACAT-ANACAA-ATGTACATGG-C-ATTTCAACNATNAG---A-ATTACAAGAGACTATTATCACAAATAGGACAATA-------------ATAT---C--AC--------ATACGCTTATATCACAAAGGT-A-AATAC-A-C--A-AAATA--TTACGT-TAATTATAGGACCTTGATATTTCGTCATCAAACGTCGCACCTATACCTCCGTTTATCACCATGTTATA-G-C-CAAA-TGAGCGCCG
Reference ( family-820 ) : NNNNNAAACAANAT---GACGTATTNTTTTATTATAGTCT-AT------C-AN-ACACATANATANAANCATAATA-AAG---------TACACAT-ANACAA-ATGTACATGG-C-ATTTCAACNATNAG---A-ATTACAAGAGACTATTATCACAAATAGGACAATA-------------ATAT---C--AC--------ATACGCTTATATCACAAAGGT-A-AATAC-A-C--A-AAATA--TTACGT-TAATTATAGGACCTTGATATTTCGTCATCAAACGTCGCACCTATACCTCCGTTTATCACCATGTTATA-G-C-CAAA-TGAGCGCCG
gi|1 : AAATAACAT---GATGTATTATTTTATTATAATATCAT------CCAT-ATACATAAGCATAAACACAATA-AAA---------TATATAT-AAACAA-ATGTACATGG-C-ATTTCAACTATTAG---A-ATTACAAGAGACTATTATCACAAATAGTACAATA-------------ATAT---C--AC--------AAACGCTTATATCACAAAGTT-A-AATAC-A-C--A-AAATA--TTACAT-TAATTATAGGACCTTGATATTTTGTCATCAAACGTCGCACCTATACCTCCGCTTATCACCATGTTATT-G-CACGAA-TGAGTGCCG
gi|10 : tgtttGGATCTTAAAATTTCTTCGTCTTAAGTTGCACCTCTACCCCAGAATATCACCATGTTATA-T-T-TCAA-TGAACGCCG
gi|11 : AGGACCTTGATATTTCGTCATCAAACGACGCACCTATACCTCCGTTCATCACCATGTTATA-C-A-CAAAGTGAGCGCcc
gi|13 : GGTCCTTGATATGTCGTCATCAAACTTCGTATCTATACCTCCATTTATCGTCATGTTATA-GTC-CAAA-TGAG
gi|14 : TACGCTTATATCACAAAGGT-A-AATAC-A-C--A-AAATA--TTACGT-TAATTATAGGACCTTCATATGTCGTC
gi|15 : GTCATCAAACGCCGCACCGTTACCTCCGTTTATCTCCATGTTACA-GTT-CAAA-GGAG
gi|16 : AA-ATGTACATTGTC-ATT-CAACTGT--G---A-ATTACAAGAGACT
gi|2 : AAGCAAC-----GATTTATTCATTTATTATAGTCT-ATAGTATAC-AC-ACACATACATATAATTATGATATAA-----------ACATGT-ACACAA-ACGTACACGG-CCATTT-AACAATAAG---A-ATTGCAAGAGACTATAATCACAAATACGACAACA-------------CTAT---C--AC--------ATACGCT-ATGACACAAAGGT-A-AATAC-AAC--A-ATACA--ATACGT-TAATTATAGGACCTTGATATTTCG
gi|3 : atattacatgctataACAAATT---GAAGTAT-ATTTTATAATAGTTT-AT-----------------ACATAAAACCATAATA-AAG---------C---CA--AAACA---CGTAAATGG-C-TATTCAACAATTAACATACATTTCAAGAGACTATTATCACAAATAGGTCAATA-------------ATAC---CAAAT--------ATATTTTTATATAAC-----T-ATATTAC-G-CTAA-AAATA--TTACAT-AAGTTATGGAACAGTGAAATGTTTTCATCAAA-----CACCTAT
gi|4 : tacgttACAA-ATGTACATGT-C-ATT-CAACTATCAG---A-ATTGCAAGAGACTATTGTCACACATAGTACAATG-------------ATAT---C--AC--------ATA------TATCACAAATGT-A-AATAC-A-C--A-AAATA--TTACAT-TAGTGATAGGACATTTATATTTCGTCATCAAACGTCGCACCTATACCTCCGTTTATCACCATGTTATG-GTC-CAAA-TGA
gi|5 : aattttgagagaaatgataggttacttATATA-ATAAAACCATAA-A-ATA---------TACACATTATCAAA-ATATACATAG-T-TATTCTGTAATTAG---A-ATTACAAGAGACTATCATTACGAATAGGACAATA-------------ATAT---C--ACATTCCTATATACGCTCATAGCAAAAAAATCA-AATATAA-T--ATAAATA--TTACTTACAATTA
gi|6 : agtttataattctgataattaatttgttaactgctaattactaAAACAAGATTTAGACTTATTCTTTCATTATAATCTCAT------C-AAGACACATAGATACACACATAATA-AAGCCGTAAACTTACCCAT-ACACAATATGTCGATGGTC-ATT-CAACATTAAG---A-ATTAAAAGAGACTATTATCACAAATAGGATAACACAATCAAATTCCTATATATAC--GCTT------ATACGCTTATATCAC
gi|7 : TAT---C--AC--------ATACGCTTATATCACAAAGAT-T-GATAC-A-C--A-AAATAGTCTAT-T-TAA-TATAGGACCTTGGTATTTCGTTATCAAACGTCACACCTACACCTTCGTTTATCACAATGT-------C-CGAA-TGAGCG
gi|8 : CGCTTATACCACAAAGGT-T-AATTC-A-C--A-AAATA--TTACAT-TAATCATAGGACCCGGATATTTCGTCAACAAACGTCACACCTACACCTCCGTTTATCACCATGTTATATT-C-CAAA-TGGACGCC
gi|9 : -A-AATAC-A-C--A-AAATA--TTACTT-TAATTAAAGGACCTTGATATTTCGTCATCAAACGCCGCACCTATACCTCCGTTTATCACCATGTTATA-GAG-TAAA-TGAGCG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTGATTTATTTATACATACATACACACACATACATGTAATTTGTATATGCTATGTACATGTAACACAAAGTACA
Unaligned ( gi|17 ): TCCGTTTCTCGCAAAGTCATGTTTCGATGAGCACCGCC
Alignments
lowQualScore : 222222 444444444444444 3333333333 1 1 111 3333333333333 111 22222222 22222
lowQualScore : 555555 66 333 0 1 8 222222222222222 8 1 1 0 8 8888888888 0 0 88 1 5 1 5 2 1 6 000 5 6666666666666 000 77 88888888 0 555 8 66 4 66 8 4 66666 4
lowQualScore : ...... .. ... . . . ............... . . . . . .......... . . .. . . . . . . . ... . ............. ... .. ........ . ... . .. . .. . . ..... .
lowQualScore : 222222 88 222 8 4 0 888888888888888 8 0 0 8 0 4444444444 8 6 88 0 7 4 7 0 0 6 000 7 7777777777777 000 99 66666666 2 777 9 11 4 11 2 4 99999 4
consensus : NNNNNAAACAANAT---GACGTATTATTTTATTATAGT-CT----CAT-C-AC-ACACATANATANAANCATAATA-AAG---------TACACAT-ANACAA-ATGTACATGG-C-ATTTCAACNATNAG---A-ATTACAAGAGACTATTATCACAAATAGGACAATA-------------ATAT---C--AC--------ATACGCTTATATCACAAAGGT-A-AATAC-AC--A-AAATA--TTACGT-TAATTATAGGACCTTGATATTTCGTCATCAAACGTCGCACCTATACCTCCGTTTATCACCATGTTATA-G-C-CAAA-TGAGCGCCG
Reference ( family-820 ) : NNNNNAAACAANAT---GACGTATTNTTTTATTATAGT-CT----CAT-C-AN-ACACATANATANAANCATAATA-AAG---------TACACAT-ANACAA-ATGTACATGG-C-ATTTCAACNATNAG---A-ATTACAAGAGACTATTATCACAAATAGGACAATA-------------ATAT---C--AC--------ATACGCTTATATCACAAAGGT-A-AATAC-AC--A-AAATA--TTACGT-TAATTATAGGACCTTGATATTTCGTCATCAAACGTCGCACCTATACCTCCGTTTATCACCATGTTATA-G-C-CAAA-TGAGCGCCG
gi|1 : AAATAACAT---GATGTATTATTTTATTATAAT-AT----CAT-CCAT-ATACATAAGCATAAACACAATA-AAA---------TATATAT-AAACAA-ATGTACATGG-C-ATTTCAACTATTAG---A-ATTACAAGAGACTATTATCACAAATAGTACAATA-------------ATAT---C--AC--------AAACGCTTATATCACAAAGTT-A-AATAC-AC--A-AAATA--TTACAT-TAATTATAGGACCTTGATATTTTGTCATCAAACGTCGCACCTATACCTCCGCTTATCACCATGTTATT-G-CACGAA-TGAGTGCCG
gi|10 : tgtttGGATCTTAAAATTTCTTCGTCTTAAGTTGCACCTCTACCCCAGAATATCACCATGTTATA-T-T-TCAA-TGAACGCCG
gi|11 : AGGACCTTGATATTTCGTCATCAAACGACGCACCTATACCTCCGTTCATCACCATGTTATA-C-A-CAAAGTGAGCGCcc
gi|13 : GGTCCTTGATATGTCGTCATCAAACTTCGTATCTATACCTCCATTTATCGTCATGTTATA-GTC-CAAA-TGAG
gi|14 : TACGCTTATATCACAAAGGT-A-AATAC-AC--A-AAATA--TTACGT-TAATTATAGGACCTTCATATGTCGTC
gi|15 : GTCATCAAACGCCGCACCGTTACCTCCGTTTATCTCCATGTTACA-GTT-CAAA-GGAG
gi|16 : AA-ATGTACATTGTC-ATT-CAACTGT--G---A-ATTACAAGAGACT
gi|2 : AAGCAAC-----GATTTATTCATTTATTATAGT-CTATAGTATAC-AC-ACACATACATATAATTATGATATAA-----------ACATGT-ACACAA-ACGTACACGG-CCATTT-AACAATAAG---A-ATTGCAAGAGACTATAATCACAAATACGACAACA-------------CTAT---C--AC--------ATACGC-TATGACACAAAGGT-A-AATACAAC--A-ATACA--ATACGT-TAATTATAGGACCTTGATATTTCG
gi|3 : atattacatgctataACAAATT---GAAGTAT-ATTTTATAATAGT-TT-----------------ATACATAAAACCATAATA-AAG---------C---CA--AAACA---CGTAAATGG-C-TATTCAACAATTAACATACATTTCAAGAGACTATTATCACAAATAGGTCAATA-------------ATAC---CAAAT--------ATATTTTTATATAAC-----T-ATATTAC-GCTAA-AAATA--TTACAT-AAGTTATGGAACAGTGAAATGTTTTCATCAAA-----CACCTAT
gi|4 : tacgttACAA-ATGTACATGT-C-ATT-CAACTATCAG---A-ATTGCAAGAGACTATTGTCACACATAGTACAATG-------------ATAT---C--AC--------ATA------TATCACAAATGT-A-AATAC-AC--A-AAATA--TTACAT-TAGTGATAGGACATTTATATTTCGTCATCAAACGTCGCACCTATACCTCCGTTTATCACCATGTTATG-GTC-CAAA-TGA
gi|5 : aattttgagagaaatgataggttacttATTAATTTGTTA-ACTGCT----AAT-T-AC-TAATATA-ATAAAACCATAA-A-ATA---------TACACATTATCAAA-ATATACATAG-T-TATTCTGTAATTAG---A-ATTACAAGAGACTATCATTACGAATAGGACAATA-------------ATAT---C--ACATTCCTATATACGCTCATAGCAAAAAAATCA-AATATAAT--ATAAATA--TTACTTACAATTA
gi|6 : agtttataattctgataAAACAAGATTTAGACTTATTCTTTCATTATAAT-CT----CAT-C-AAGACACATAGATACACACATAATA-AAGCCGTAAACTTACCCAT-ACACAATATGTCGATGGTC-ATT-CAACATTAAG---A-ATTAAAAGAGACTATTATCACAAATAGGATAACACAATCAAATTCCTATATATAC--GCTT------ATACGCTTATATCAC
gi|7 : TAT---C--AC--------ATACGCTTATATCACAAAGAT-T-GATAC-AC--A-AAATAGTCTAT-T-TAA-TATAGGACCTTGGTATTTCGTTATCAAACGTCACACCTACACCTTCGTTTATCACAATGT-------C-CGAA-TGAGCG
gi|8 : CGCTTATACCACAAAGGT-T-AATTC-AC--A-AAATA--TTACAT-TAATCATAGGACCCGGATATTTCGTCAACAAACGTCACACCTACACCTCCGTTTATCACCATGTTATATT-C-CAAA-TGGACGCC
gi|9 : -A-AATAC-AC--A-AAATA--TTACTT-TAATTAAAGGACCTTGATATTTCGTCATCAAACGCCGCACCTATACCTCCGTTTATCACCATGTTATA-GAG-TAAA-TGAGCG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTGATTTATTTATACATACATACACACACATACATGTAATTTGTATATGCTATGTACATGTAACACAAAGTACA
Unaligned ( gi|17 ): TCCGTTTCTCGCAAAGTCATGTTTCGATGAGCACCGCC
Alignments
lowQualScore : 222222 444444444444444 3333333333 1 1 111 3333333333333 111 22222222 22222
lowQualScore : 555555 66 222 0 1 8 222222222222222 8 1 1 0 8 8888888888 0 0 88 1 5 1 5 2 1 6 000 5 6666666666666 000 77 88888888 0 0 555 4 4 66 4 66 8 4 66666 4
lowQualScore : ...... .. ... . . . ............... . . . . . .......... . . .. . . . . . . . ... . ............. ... .. ........ . . ... . . .. . .. . . ..... .
lowQualScore : 222222 88 888 8 4 0 222222222222222 8 0 0 8 0 4444444444 8 6 88 0 7 4 7 0 0 6 000 7 7777777777777 000 99 66666666 8 2 777 4 4 11 4 11 2 4 99999 4
consensus : NNNNNAAACAANAT---GACGTATTATTTTATTATAGT-CT----CAT-C-AC-ACACATANATANAANCATAATA-AAG---------TACACAT-ANACAA-ATGTACATGG-C-ATTTCAACNATNAG---A-ATTACAAGAGACTATTATCACAAATAGGACAATA-------------ATAT---C--AC--------ATACGCTTATATCACAAAGGT-A-AATAC-A-C--A-AAATA--TTACGT-TAATTATAGGACCTTGATATTTCGTCATCAAACGTCGCACCTATACCTCCGTTTATCACCATGTTATA-G-C-CAAA-TGAGCGCCG
Reference ( family-820 ) : NNNNNAAACAANAT---GACGTATTATTTTATTATAGT-CT----CAT-C-AC-ACACATANATANAANCATAATA-AAG---------TACACAT-ANACAA-ATGTACATGG-C-ATTTCAACNATNAG---A-ATTACAAGAGACTATTATCACAAATAGGACAATA-------------ATAT---C--AC--------ATACGCTTATATCACAAAGGT-A-AATAC-A-C--A-AAATA--TTACGT-TAATTATAGGACCTTGATATTTCGTCATCAAACGTCGCACCTATACCTCCGTTTATCACCATGTTATA-G-C-CAAA-TGAGCGCCG
gi|1 : AAATAACAT---GATGTATTATTTTATTATAAT-AT----CAT-CCAT-ATACATAAGCATAAACACAATA-AAA---------TATATAT-AAACAA-ATGTACATGG-C-ATTTCAACTATTAG---A-ATTACAAGAGACTATTATCACAAATAGTACAATA-------------ATAT---C--AC--------AAACGCTTATATCACAAAGTT-A-AATAC-A-C--A-AAATA--TTACAT-TAATTATAGGACCTTGATATTTTGTCATCAAACGTCGCACCTATACCTCCGCTTATCACCATGTTATT-G-CACGAA-TGAGTGCCG
gi|10 : tgtttGGATCTTAAAATTTCTTCGTCTTAAGTTGCACCTCTACCCCAGAATATCACCATGTTATA-T-T-TCAA-TGAACGCCG
gi|11 : AGGACCTTGATATTTCGTCATCAAACGACGCACCTATACCTCCGTTCATCACCATGTTATA-C-A-CAAAGTGAGCGCcc
gi|13 : GGTCCTTGATATGTCGTCATCAAACTTCGTATCTATACCTCCATTTATCGTCATGTTATA-GTC-CAAA-TGAG
gi|14 : TACGCTTATATCACAAAGGT-A-AATAC-A-C--A-AAATA--TTACGT-TAATTATAGGACCTTCATATGTCGTC
gi|15 : GTCATCAAACGCCGCACCGTTACCTCCGTTTATCTCCATGTTACA-GTT-CAAA-GGAG
gi|16 : AA-ATGTACATTGTC-ATT-CAACTGT--G---A-ATTACAAGAGACT
gi|2 : AAGCAAC-----GATTTATTCATTTATTATAGT-CTATAGTATAC-AC-ACACATACATATAATTATGATATAA-----------ACATGT-ACACAA-ACGTACACGG-CCATTT-AACAATAAG---A-ATTGCAAGAGACTATAATCACAAATACGACAACA-------------CTAT---C--AC--------ATACGCT-ATGACACAAAGGT-A-AATAC-AAC--A-ATACA--ATACGT-TAATTATAGGACCTTGATATTTCG
gi|3 : atattacatgctataACAAATT---GAAGTAT-ATTTTATAATAGT-TT-----------------ATACATAAAACCATAATA-AAG---------C---CA--AAACA---CGTAAATGG-C-TATTCAACAATTAACATACATTTCAAGAGACTATTATCACAAATAGGTCAATA-------------ATAC---CAAAT--------ATATTTTTATATAAC-----T-ATATTAC-G-CTAA-AAATA--TTACAT-AAGTTATGGAACAGTGAAATGTTTTCATCAAA-----CACCTAT
gi|4 : tacgttACAA-ATGTACATGT-C-ATT-CAACTATCAG---A-ATTGCAAGAGACTATTGTCACACATAGTACAATG-------------ATAT---C--AC--------ATA------TATCACAAATGT-A-AATAC-A-C--A-AAATA--TTACAT-TAGTGATAGGACATTTATATTTCGTCATCAAACGTCGCACCTATACCTCCGTTTATCACCATGTTATG-GTC-CAAA-TGA
gi|5 : aattttgagagaaatgataggttacttATTAATTTGTTA-ACTGCT----AAT-T-AC-TAATATA-ATAAAACCATAA-A-ATA---------TACACATTATCAAA-ATATACATAG-T-TATTCTGTAATTAG---A-ATTACAAGAGACTATCATTACGAATAGGACAATA-------------ATAT---C--ACATTCCTATATACGCTCATAGCAAAAAAATCA-AATATAA-T--ATAAATA--TTACTTACAATTA
gi|6 : agtttataattctgataAAACAAGATTTAGACTTATTCTTTCATTATAAT-CT----CAT-C-AAGACACATAGATACACACATAATA-AAGCCGTAAACTTACCCAT-ACACAATATGTCGATGGTC-ATT-CAACATTAAG---A-ATTAAAAGAGACTATTATCACAAATAGGATAACACAATCAAATTCCTATATATAC--GCTT------ATACGCTTATATCAC
gi|7 : TAT---C--AC--------ATACGCTTATATCACAAAGAT-T-GATAC-A-C--A-AAATAGTCTAT-T-TAA-TATAGGACCTTGGTATTTCGTTATCAAACGTCACACCTACACCTTCGTTTATCACAATGT-------C-CGAA-TGAGCG
gi|8 : CGCTTATACCACAAAGGT-T-AATTC-A-C--A-AAATA--TTACAT-TAATCATAGGACCCGGATATTTCGTCAACAAACGTCACACCTACACCTCCGTTTATCACCATGTTATATT-C-CAAA-TGGACGCC
gi|9 : -A-AATAC-A-C--A-AAATA--TTACTT-TAATTAAAGGACCTTGATATTTCGTCATCAAACGCCGCACCTATACCTCCGTTTATCACCATGTTATA-GAG-TAAA-TGAGCG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTGATTTATTTATACATACATACACACACATACATGTAATTTGTATATGCTATGTACATGTAACACAAAGTACA
Unaligned ( gi|17 ): TCCGTTTCTCGCAAAGTCATGTTTCGATGAGCACCGCC
Alignments
lowQualScore : 222222 444444444444444 3333333333 1 1 111 3333333333333 111 22222222 22222
lowQualScore : 555555 66 222 0 1 8 222222222222222 8 1 1 0 8 8888888888 0 0 88 1 5 1 5 2 1 6 000 5 6666666666666 000 77 88888888 0 0 555 4 4 66 4 66 8 4 66666 4
lowQualScore : ...... .. ... . . . ............... . . . . . .......... . . .. . . . . . . . ... . ............. ... .. ........ . . ... . . .. . .. . . ..... .
lowQualScore : 222222 88 888 8 4 0 222222222222222 8 0 0 8 0 4444444444 8 6 88 0 7 4 7 0 0 6 000 7 7777777777777 000 99 66666666 8 2 777 4 4 11 4 11 2 4 99999 4
consensus : NNNNNAAACAANAT---GACGTATTATTTTATTATAGT-CT----CAT-C-AC-ACACATANATANAANCATAATA-AAG---------TACACAT-ANACAA-ATGTACATGG-C-ATTTCAACNATNAG---A-ATTACAAGAGACTATTATCACAAATAGGACAATA-------------ATAT---C--AC--------ATACGCTTATATCACAAAGGT-A-AATAC-A-C--A-AAATA--TTACGT-TAATTATAGGACCTTGATATTTCGTCATCAAACGTCGCACCTATACCTCCGTTTATCACCATGTTATA-G-C-CAAA-TGAGCGCCG
Reference ( family-820 ) : NNNNNAAACAANAT---GACGTATTATTTTATTATAGT-CT----CAT-C-AC-ACACATANATANAANCATAATA-AAG---------TACACAT-ANACAA-ATGTACATGG-C-ATTTCAACNATNAG---A-ATTACAAGAGACTATTATCACAAATAGGACAATA-------------ATAT---C--AC--------ATACGCTTATATCACAAAGGT-A-AATAC-A-C--A-AAATA--TTACGT-TAATTATAGGACCTTGATATTTCGTCATCAAACGTCGCACCTATACCTCCGTTTATCACCATGTTATA-G-C-CAAA-TGAGCGCCG
gi|1 : AAATAACAT---GATGTATTATTTTATTATAAT-AT----CAT-CCAT-ATACATAAGCATAAACACAATA-AAA---------TATATAT-AAACAA-ATGTACATGG-C-ATTTCAACTATTAG---A-ATTACAAGAGACTATTATCACAAATAGTACAATA-------------ATAT---C--AC--------AAACGCTTATATCACAAAGTT-A-AATAC-A-C--A-AAATA--TTACAT-TAATTATAGGACCTTGATATTTTGTCATCAAACGTCGCACCTATACCTCCGCTTATCACCATGTTATT-G-CACGAA-TGAGTGCCG
gi|10 : tgtttGGATCTTAAAATTTCTTCGTCTTAAGTTGCACCTCTACCCCAGAATATCACCATGTTATA-T-T-TCAA-TGAACGCCG
gi|11 : AGGACCTTGATATTTCGTCATCAAACGACGCACCTATACCTCCGTTCATCACCATGTTATA-C-A-CAAAGTGAGCGCcc
gi|13 : GGTCCTTGATATGTCGTCATCAAACTTCGTATCTATACCTCCATTTATCGTCATGTTATA-GTC-CAAA-TGAG
gi|14 : TACGCTTATATCACAAAGGT-A-AATAC-A-C--A-AAATA--TTACGT-TAATTATAGGACCTTCATATGTCGTC
gi|15 : GTCATCAAACGCCGCACCGTTACCTCCGTTTATCTCCATGTTACA-GTT-CAAA-GGAG
gi|16 : AA-ATGTACATTGTC-ATT-CAACTGT--G---A-ATTACAAGAGACT
gi|2 : AAGCAAC-----GATTTATTCATTTATTATAGT-CTATAGTATAC-AC-ACACATACATATAATTATGATATAA-----------ACATGT-ACACAA-ACGTACACGG-CCATTT-AACAATAAG---A-ATTGCAAGAGACTATAATCACAAATACGACAACA-------------CTAT---C--AC--------ATACGCT-ATGACACAAAGGT-A-AATAC-AAC--A-ATACA--ATACGT-TAATTATAGGACCTTGATATTTCG
gi|3 : atattacatgctataACAAATT---GAAGTAT-ATTTTATAATAGT-TT-----------------ATACATAAAACCATAATA-AAG---------C---CA--AAACA---CGTAAATGG-C-TATTCAACAATTAACATACATTTCAAGAGACTATTATCACAAATAGGTCAATA-------------ATAC---CAAAT--------ATATTTTTATATAAC-----T-ATATTAC-G-CTAA-AAATA--TTACAT-AAGTTATGGAACAGTGAAATGTTTTCATCAAA-----CACCTAT
gi|4 : tacgttACAA-ATGTACATGT-C-ATT-CAACTATCAG---A-ATTGCAAGAGACTATTGTCACACATAGTACAATG-------------ATAT---C--AC--------ATA------TATCACAAATGT-A-AATAC-A-C--A-AAATA--TTACAT-TAGTGATAGGACATTTATATTTCGTCATCAAACGTCGCACCTATACCTCCGTTTATCACCATGTTATG-GTC-CAAA-TGA
gi|5 : aattttgagagaaatgataggttacttATTAATTTGTTA-ACTGCT----AAT-T-AC-TAATATA-ATAAAACCATAA-A-ATA---------TACACATTATCAAA-ATATACATAG-T-TATTCTGTAATTAG---A-ATTACAAGAGACTATCATTACGAATAGGACAATA-------------ATAT---C--ACATTCCTATATACGCTCATAGCAAAAAAATCA-AATATAA-T--ATAAATA--TTACTTACAATTA
gi|6 : agtttataattctgataAAACAAGATTTAGACTTATTCTTTCATTATAAT-CT----CAT-C-AAGACACATAGATACACACATAATA-AAGCCGTAAACTTACCCAT-ACACAATATGTCGATGGTC-ATT-CAACATTAAG---A-ATTAAAAGAGACTATTATCACAAATAGGATAACACAATCAAATTCCTATATATAC--GCTT------ATACGCTTATATCAC
gi|7 : TAT---C--AC--------ATACGCTTATATCACAAAGAT-T-GATAC-A-C--A-AAATAGTCTAT-T-TAA-TATAGGACCTTGGTATTTCGTTATCAAACGTCACACCTACACCTTCGTTTATCACAATGT-------C-CGAA-TGAGCG
gi|8 : CGCTTATACCACAAAGGT-T-AATTC-A-C--A-AAATA--TTACAT-TAATCATAGGACCCGGATATTTCGTCAACAAACGTCACACCTACACCTCCGTTTATCACCATGTTATATT-C-CAAA-TGGACGCC
gi|9 : -A-AATAC-A-C--A-AAATA--TTACTT-TAATTAAAGGACCTTGATATTTCGTCATCAAACGCCGCACCTATACCTCCGTTTATCACCATGTTATA-GAG-TAAA-TGAGCG
blockSeqs : GATTTA TT TCA G G ATAGTATACACAC C T T T GCCGTAAACT TT C T T C T T A CAT C CAATCAAATTCCT ATA AA ATTCCTAT AT A A TA T GT G A GTC G
blockSeqs : ATT AG TAA G . CATCAAGAC C A C . G T A . T . T A T . . . . . TT CA . . . . . G . GTT .
blockSeqs : C CT TCT C . AATTACTA G A C . A T T . . . T A C . . . . . . A . . . . . A . GTC .
blockSeqs : AT A . . . C A . . . C . . . . T T . . . . . . A . . . . . A . TTC .
blockSeqs : . . . . A A . . . . . . A . . . . . T . GAG .
blockSeqs : . . . . A . . . . . . T . . . . . A . TT .
blockSeqs : T . . . . . T . CA .
blockSeqs : A . . . . . . . C .
blockSeqCons : CAGAC**********
originalCons : NNNNNAAACAANAT---GACGTATTATTTTATTATAGT-CT----CAT-C-AC-ACACATANATANAANCATAATA-AAG---------TACACAT-ANACAA-ATGTACATGG-C-ATTTCAACNATNAG---A-ATTACAAGAGACTATTATCACAAATAGGACAATA-------------ATAT---C--AC--------ATACGCTTATATCACAAAGGT-A-AATAC-A-C--A-AAATA--TTACGT-TAATTATAGGACCTTGATATTTCGTCATCAAACGTCGCACCTATACCTCCGTTTATCACCATGTTATA-G-C-CAAA-TGAGCGCCG
finalCons : NNNNNAAACAANAT---GACGTATTATTTTATTATAGT-CTCAGAC----------ACATANATANAANCATAATA-AAG---------TACACAT-ANACAA-ATGTACATGG-C-ATTTCAACNATNAG---A-ATTACAAGAGACTATTATCACAAATAGGACAATA-------------ATAT---C--AC--------ATACGCTTATATCACAAAGGT-A-AATAC-A-C--A-AAATA--TTACGT-TAATTATAGGACCTTGATATTTCGTCATCAAACGTCGCACCTATACCTCCGTTTATCACCATGTTATA-G-C-CAAA-TGAGCGCCG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTGATTTATTTATACATACATACACACACATACATGTAATTTGTATATGCTATGTACATGTAACACAAAGTACA
Unaligned ( gi|17 ): TCCGTTTCTCGCAAAGTCATGTTTCGATGAGCACCGCC
Alignments
lowQualScore : 222222 6666666666666666 11111 3333333333 1 1 111 3333333333333 111 22222222 22222
lowQualScore : 555555 66 66 0 8888888888888888 1 8 88888 1 0 8 8888888888 0 0 88 1 5 1 5 2 1 6 000 5 6666666666666 000 77 88888888 0 555 8 66 4 66 8 4 66666 4
lowQualScore : ...... .. .. . ................ . . ..... . . . .......... . . .. . . . . . . . ... . ............. ... .. ........ . ... . .. . .. . . ..... .
lowQualScore : 222222 88 22 2 8888888888888888 4 8 00000 0 8 0 4444444444 8 6 88 0 7 4 7 0 0 6 000 7 7777777777777 000 99 66666666 2 777 9 11 4 11 2 4 99999 4
consensus : NNNNNAAACAANAT---GACGTATTNTTTTATTATAGTCT--------CA----NACACATACATAA----AANCATAATA-AAG---------TACACAT-ANACAA-ATGTACATGG-C-ATTTCAACNATNAG---A-ATTACAAGAGACTATTATCACAAATAGGACAATA-------------ATAT---C--AC--------ATACGCTTATATCACAAAGGT-A-AATAC-AC--A-AAATA--TTACGT-TAATTATAGGACCTTGATATTTCGTCATCAAACGTCGCACCTATACCTCCGTTTATCACCATGTTATA-G-C-CAAA-TGAGCGCCG
Reference ( family-820 ) : NNNNNAAACAANAT---GACGTATTATTTTATTATAGTCT--------CA----GACACATANATAN----AANCATAATA-AAG---------TACACAT-ANACAA-ATGTACATGG-C-ATTTCAACNATNAG---A-ATTACAAGAGACTATTATCACAAATAGGACAATA-------------ATAT---C--AC--------ATACGCTTATATCACAAAGGT-A-AATAC-AC--A-AAATA--TTACGT-TAATTATAGGACCTTGATATTTCGTCATCAAACGTCGCACCTATACCTCCGTTTATCACCATGTTATA-G-C-CAAA-TGAGCGCCG
gi|1 : AAATAACAT---GATGTATTATTTTATTATAATAT--------CA----TCCATATACATAAGCATAAACACAATA-AAA---------TATATAT-AAACAA-ATGTACATGG-C-ATTTCAACTATTAG---A-ATTACAAGAGACTATTATCACAAATAGTACAATA-------------ATAT---C--AC--------AAACGCTTATATCACAAAGTT-A-AATAC-AC--A-AAATA--TTACAT-TAATTATAGGACCTTGATATTTTGTCATCAAACGTCGCACCTATACCTCCGCTTATCACCATGTTATT-G-CACGAA-TGAGTGCCG
gi|10 : tgtttGGATCTTAAAATTTCTTCGTCTTAAGTTGCACCTCTACCCCAGAATATCACCATGTTATA-T-T-TCAA-TGAACGCCG
gi|11 : AGGACCTTGATATTTCGTCATCAAACGACGCACCTATACCTCCGTTCATCACCATGTTATA-C-A-CAAAGTGAGCGCcc
gi|13 : GGTCCTTGATATGTCGTCATCAAACTTCGTATCTATACCTCCATTTATCGTCATGTTATA-GTC-CAAA-TGAG
gi|14 : TACGCTTATATCACAAAGGT-A-AATAC-AC--A-AAATA--TTACGT-TAATTATAGGACCTTCATATGTCGTC
gi|15 : GTCATCAAACGCCGCACCGTTACCTCCGTTTATCTCCATGTTACA-GTT-CAAA-GGAG
gi|16 : AA-ATGTACATTGTC-ATT-CAACTGT--G---A-ATTACAAGAGACT
gi|2 : AAGCAAC-----GATTTATTCATTTATTATAGTCTATAGTATACA----CACACATACATAT----AATTATGATATAA-----------ACATGT-ACACAA-ACGTACACGG-CCATTT-AACAATAAG---A-ATTGCAAGAGACTATAATCACAAATACGACAACA-------------CTAT---C--AC--------ATACGC-TATGACACAAAGGT-A-AATACAAC--A-ATACA--ATACGT-TAATTATAGGACCTTGATATTTCG
gi|3 : atattacatgctataACAAATT---GAAGTAT-ATTTTATAATAGTTT-------------------ATACATAA----AACCATAATA-AAG---------C---CA--AAACA---CGTAAATGG-C-TATTCAACAATTAACATACATTTCAAGAGACTATTATCACAAATAGGTCAATA-------------ATAC---CAAAT--------ATATTTTTATATAAC-----T-ATATTAC-GCTAA-AAATA--TTACAT-AAGTTATGGAACAGTGAAATGTTTTCATCAAA-----CACCTAT
gi|4 : tacgttACAA-ATGTACATGT-C-ATT-CAACTATCAG---A-ATTGCAAGAGACTATTGTCACACATAGTACAATG-------------ATAT---C--AC--------ATA------TATCACAAATGT-A-AATAC-AC--A-AAATA--TTACAT-TAGTGATAGGACATTTATATTTCGTCATCAAACGTCGCACCTATACCTCCGTTTATCACCATGTTATG-GTC-CAAA-TGA
gi|5 : aattttgagagaaatgataggttacttATATA-ATAA----AACCATAA-A-ATA---------TACACATTATCAAA-ATATACATAG-T-TATTCTGTAATTAG---A-ATTACAAGAGACTATCATTACGAATAGGACAATA-------------ATAT---C--ACATTCCTATATACGCTCATAGCAAAAAAATCA-AATATAAT--ATAAATA--TTACTTACAATTA
gi|6 : agtttataattctgataattaatttgttaactgctaattactaAAACAAGATTTAGACTTATTCTTTCATTATAATCT--------CATCAAGACACATAGATAC----ACACATAATA-AAGCCGTAAACTTACCCAT-ACACAATATGTCGATGGTC-ATT-CAACATTAAG---A-ATTAAAAGAGACTATTATCACAAATAGGATAACACAATCAAATTCCTATATATAC--GCTT------ATACGCTTATATCAC
gi|7 : TAT---C--AC--------ATACGCTTATATCACAAAGAT-T-GATAC-AC--A-AAATAGTCTAT-T-TAA-TATAGGACCTTGGTATTTCGTTATCAAACGTCACACCTACACCTTCGTTTATCACAATGT-------C-CGAA-TGAGCG
gi|8 : CGCTTATACCACAAAGGT-T-AATTC-AC--A-AAATA--TTACAT-TAATCATAGGACCCGGATATTTCGTCAACAAACGTCACACCTACACCTCCGTTTATCACCATGTTATATT-C-CAAA-TGGACGCC
gi|9 : -A-AATAC-AC--A-AAATA--TTACTT-TAATTAAAGGACCTTGATATTTCGTCATCAAACGCCGCACCTATACCTCCGTTTATCACCATGTTATA-GAG-TAAA-TGAGCG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTGATTTATTTATACATACATACACACACATACATGTAATTTGTATATGCTATGTACATGTAACACAAAGTACA
Unaligned ( gi|17 ): TCCGTTTCTCGCAAAGTCATGTTTCGATGAGCACCGCC