lowQualScore : 1 11 222222222222 11
lowQualScore : 1 00 55555 2222 9 1 555555555 44444 22 3 44 1 666666666666 99 1 1 5 555555 44 55
lowQualScore : . .. ..... .... . . ......... ..... .. . .. . ............ .. . . . ...... .. ..
lowQualScore : 3 00 33333 6666 8 6 666666666 22222 33 3 33 8 555555555555 11 8 8 7 555555 55 99
consensus : AGAGAACTCTGTCGTCGATTGATACTGATCATAAGTT-----TAC-C-CGTTTTAATTTTAA-T-------ACCTGT-----C--TTT-ATTGTAAACCGCCCTTT--TG-CG----T-C-TT-CATTG-TCT-TTT-C-T------TT--ATCAAGACCGAGCT-GTCAAAACA
Reference ( gi|4 ) : AGAGAACGCTGTCGTCGATTGATACTGATCATAAATT-----TAC-C-CGTTTTAGTTTTAA-T-------ACCTGT-----C--TTT-ATTGTAAACCGCCCTTT--TG-CA----T-C-TC-CATTG-CCT-TTT-C-T------TT--ATCAAGACCGAGCT-TTCAAAACAAT
gi|5 : AGAAAACTCTATTGACGGTTGACATTGGTCATTAATT-----TAC-A-AGTTTCAATTGTAA-T-------ACCTGT-----C--TTT-ATTGTAAACCGCCCTTT--TG-CG----T-CATT-CAATG-TAT-TTT-C-T------TT--ATCAAGACCGAGCT-GTCAAA
gi|7 : AGAGAACTCTGTCATCGATTAATACTGATTATATGTT-----TAC-C-TGTTTTAAATTTGA-----------CTGT-----C--TTT-ATTGTGAGCTGCCCTAT--TGTTG----C-C-TT-CATCG-TCT-TTT-C-T------TTA-ATCAAGATCAAGAT-GTCAAAActtg
gi|3 : AGAAAATTCCGTCGTCAATTGATACTGACCATG--TT-----TAC-CTCGTTTTATTCTAAA-T-------ACATGT-----C--TTTTATTGTAAACC---TTTT--TG-TC----T-T-TC-AATGT-CTT-TTT-T-T------TT--ATTAAGACTGAGCT-GTCAAAACAa
gi|10 : aAGAGAACACTGTCGTTGATTGGTACTGATCATACGTT-----TAT-T-CATTTTA--TTTAACT-------ATCTGT-----T--TTT-ACTGTAAACCA---------------------TT-CATTG-TCG-TTT-CTT------TT--ATCGACACCGAGCT-GTCAAAttggg
gi|1 : AGAGAGCTCCGTCGTCGATT-ATACATATCACAAGTT-----TAC-T-CGTTTTATTTTCTT-T-------ATCTGT-----C--TTT-ATTTCTAACCGCATATG--TT-CA----TCC-TT-CATTG-TCT-TTT-C-T------TTTAATCAAGACCGAGTT-GACAAAACAgtc
gi|17 : AGAGAACACTGTCGTCGATTGGTACTGATCATAAGTT-----TAC-C-CGTTTTTATTT--------------------------TTT-A--ACATACCGTCTTT------CA----T--------------T-TTT-T-T------TT--ATTAAGACCGAGCT-GTCAAAACAttgg
gi|15 : AGAGAACTCTGCCGTCGATGGATACTGATCGTAAGTT-----CGC-C-CGTTTTAATTTTAA-T-------GCCT----------TTT--TTGT-----GTCTTTT------A----T-T------TTG---T-TGT-C-T------TT--ATCGATATCGAGCT-GTCAAAttgag
gi|28 : gaAGAGAGCTCTGTCGTCGATTGATACTGATCATGAGTT-----TAC-T-CGTTTAAATTTTAA-T-------
gi|14 : aaAGAAAACTTTGTTGTCGATTGATACTGATAACAAGCT-------C-C-----TTA----------------------------------ATTGTAAACCACCTTTT--TG-CACTGCC-T-TT-CATTGTCTT-TTT-C-A------TT--ACCAAGTCCGAGCT-GTCAAA
gi|19 : aaGAGAACTCTGTCGTCGATTAATACTGATCATAAGTTAAGTGTACAC-CGCGTT--TTTTG-------------TGT-----C--TTTCATTGTAca
gi|2 : aacAGAACTCTTTCGTCGATTGTTACTGAGCATACGAT-----TAC-T-CGTTTTAATTTCAA-T-------ACCTGT-----CTTTTT-TTTGCAAACCGCTC-TT--TG-CGT---T-T-TT-CATTG-TCT-TTT-T-G------TT--ATCAAGATCAAGCTGTTGAAAACAtttattttaccaagatcgagcagcaaatcatta
gi|6 : GAACGCTATTGTTGATTGATACTGATCATTAGTC-----TAT-C-AGTTTTAATTTTAA-T-------ACCTGT-----C--TTT-ATTGTAAATCATTCTTT--TG-CA----T-CTTT-TACTG-TCT-TTT-CTT------TT--ATAAAGATGGAGCT-GTCAAAACAttgga
gi|12 : AACTCTGTGGTCGATTGATACTGGTCATAG---------------GTTTTAATTTTGA-T-------A--TGT-----C--TTT-ATTGTAAACCGCACTTT--TG-CA----T-CTTT-TATTG-TCT-TTT-
gi|27 : cCACTGTCGTCGATTGACACTGATCATAAGTT-----TAC-C-C----TAG-----------------CTGT-----C--TTT-ATTGTAAACCGaaccatgaacactgtcaaacattg
gi|8 : CTATCGCCGATTAATACTGATTATAAGTT-----GAC-C-GGTTTTATTTTT-A-T-------ACCTGT-----C--TTT-ATTGTTAACAGCTATTT--AG-CG----TAT-TT-CATTG-TCTATTT-T-T------TT--A-AAAGACCCAACT-ATCATAACAac
gi|11 : CGTTGATTGTTACTGATCA--------------------TTTAATTTTAA-T-------ACCTGT-----C--TTT-ATTGTAAA----CCTAT--TG-CG----TCC-TT-TATTG-TCT-TAT-CTT------TT--AGC-TGACTGAGCT-GTCAAAACAttggt
gi|20 : aagggaagtccaCGATTGATACTGATTATAAGTT-----TAC-T-TGTTTTAATATTAA-TGTATGTAAACTGTACGTCC--TTT-ATTGTAAttgc
gi|16 : gaaactgtaGATTGGTACTGACGATACGTT-----TAC-C-CGTTTAAATTTTAA-T-------ATC-GT-----T--ATT--TTTTAAAACGCCCTTT--CT-CG----T-CATT-CGTTG-GCT-TTT-C-T------TT---TCGATAACGAtttattttattaagac
gi|13 : ctagcgcaTGA-CATACGCT-----TAT-C-CGTTTTAATGTTAA-T-------ACTCGT-----C--TTT-ATTGTAAACCGGCCTTTG-TT-C-----C-C-TT-CAATG-TCT-TTT-C-TTCTGTATT--ATCAAGACCGAGCT-GTCAAAATAaat
gi|21 : -CGTTTTAATTTTAA-T-------ACCTGT-----C--TTT-ACTGTAAGTCACCCCTT--TA-CG----TAT-TT-CGTTG-TCT-TTT-C-T------TT--ATTAAGA-CGAGCT-GTAAGAACActg
gi|18 : TTTTAATTTTAG-T-------TCCCGT-----C--TCT-ATTGCAAACCGCTCTTT--TG-GG----T-CATT-CATTG-TAT-TTT-C-C------TT---TCAAGACAGAGCT-GTGAAAACAttggg
gi|23 : aaagagaactctgtcgttaTTTTAATTTGCA-T-------TCGTGT-----C--TTT-ATTG-AAACTTCCCTTT--TG-CT----T-C-TTTCATT----T-TTT-T-T------TT--ATCAAATTCAAGCT-GTCAAACCAtt
gi|22 : TTTAATTTTAA-C-------GCCTGT-----C--TAT-AT-GTAAACTTCTCTTTAGTG-TA----T-T-TC--ATTG-TCT-TTTTC-T------TT--ATCAAGACTGGACT-GTCAAAGCAttag
gi|26 : TTTTAA-T-------ATCTGT-----C--TTT-ATTGTAAACTGCCCCTT--TG-TG----T-CTTT-CATTG-TCT-TTT-C-T------TT--GTCAAGACCGCGCT-GTCAAAATAttg
gi|25 : TTTAA-T-------ACCTGT-----C--TTT-ATTGTAAACCGCCCTTT--TA-CG----TAT-TT-CATTG-TCT-TTC-C-T------TT--ATCAAGACCGAGCT-GTCAAAACA
gi|24 : TACATCGCCCCTT--TA-CG----T-C-TTTCGTTG-TCT-TTT-C-T------TT--ATCAAGACCGAGCT-GTCAAAACAttc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): ACCATAACTCTGTCGGACGTTTTCGGAACTATCGCATTTGTACAAGTGTTTATTTTTCTTGTTTATATTATAAAGCGTTCTTTTCTATCTTTACTTAATTTCTGTTAAACGAGCTGTCAAAAAC
Alignments
lowQualScore : 22222
lowQualScore : 2 333 1 33 1 0 0 1 0 22 1 00 333333 1 22222 4 1 1 1 1 4 666666 55 1
lowQualScore : . ... . .. . . . . . .. . .. ...... . ..... . . . . . . ...... .. .
lowQualScore : 1 555 0 55 6 6 3 5 2 11 5 99 888888 5 00000 6 5 5 5 5 6 000000 22 7
consensus : AGAGAACTCTGTCGT-CGATT---GATACTGATCATAAGTTTACC-CGT-TTTAATTTTAA-TACCTGTC--TTT-ATTGTAAACCGCCCTTTTG-C---G-T---C-TT-CATTGT-C-T-TTT-C-T------TT--ATCAAGACCGAGCTGTC-AAAACA
Reference ( family-82 ) : AGAGAACTCTGTCGT-CGATT---GATACTGATCATAAGTTTACC-CGT-TTTAATTTTAA-TACCTGTC--TTT-ATTGTAAACCGCCCTTTTG-C---G-T---C-TT-CATTGT-C-T-TTT-C-T------TT--ATCAAGACCGAGCTGTC-AAAACA
gi|1 : AGAGAGCTCCGTCGT-CGATT----ATACATATCACAAGTTTACT-CGT-TTTATTTTCTT-TATCTGTC--TTT-ATTTCTAACCGCATATGTT-C---A-TC--C-TT-CATTGT-C-T-TTT-C-T------TTTAATCAAGACCGAGTTGAC-AAAACA
gi|10 : AGAGAACACTGTCGT-TGATT---GGTACTGATCATACGTTTATT-CAT-TTTA--TTTAACTATCTGTT--TTT-ACTGTAAACCA---------------------TT-CATTGT-C-G-TTT-CTT------TT--ATCGACACCGAGCTGTC-AAAttgg
gi|11 : AGGGAAGTCCA-CGT-TGATT---GTTACTGATCAT---------------TTAATTTTAA-TACCTGTC--TTT-ATTGTAAA----CCTATTG-C---G-TC--C-TT-TATTGT-C-T-TAT-CTT------TT--AGC-TGACTGAGCTGTC-AAAACAgtc
gi|12 : aAACTCTGTGGT-CGATT---GATACTGGTCATAG---------GT-TTTAATTTTGA-TA--TGTC--TTT-ATTGTAAACCGCACTTTTG-C---A-T---CTTT-TATTGT-C-T-TTT-A------------ACCATGAAC--ACTGTC-AAAttgc
gi|13 : cTGA-CATACGCTTATC-CGT-TTTAATGTTAA-TACTCGTC--TTT-ATTGTAAACCGGCCTTT-------G-TTCCC-TT-CAATGT-C-T-TTT-C-TTCTGTATT--ATCAAGACCGAGCTGTC-AAAATAcattg
gi|14 : AGAAAACTTTGTTGT-CGATT---GATACTGATAACAAGCT--CC------TTA----------------------ATTGTAAACCACCTTTTTG-CACTG-C---CTTT-CATTGT-CTT-TTT-C-A------TT--ACCAAGTCCGAGCTGTC-AAActg
gi|15 : aaAGAGAACTCTGCCGT-CGATG---GATACTGATCGTAAGTTCGCC-CGT-TTTAATTTTAA-TGCCT----------------------TTTTTG-T---G-T---CTTT-TATTTT-G-T-TGT-C-T------TT--ATCGATATCGAGCTGTC-AAAca
gi|16 : gaGATT---GGTACTGACGATACGTTTACC-CGT-TTAAATTTTAA-TATC-GTT--ATT--TTTTAAAACGCCCTTTCT-C---G-T---CATT-CGTTGG-C-T-TTT-C-T------TT---TCGATAACGA
gi|17 : ctagcgcaAGAGAACACTGTCGT-CGATT---GGTACTGATCATAAGTTTACC-CGT-TTTTATTT--------------TTT-A--ACATACCGTC-----------------T-TT-CAT------T-TTT-T-T------TT--ATTAAGACCGAGCTGTC-AAAACAaat
gi|18 : T-TTTAATTTTAG-TTCCCGTC--TCT-ATTGCAAACCGCTCTTTTG-G---G-T---CATT-CATTGT-A-T-TTT-C-C------TT---TCAAGACAGAGCTGTG-AAAACAttgag
gi|19 : aaagagaactctgtcgttaGAGAACTCTGTCGT-CGATT---AATACTGATCATAAG------------TTAAGTGT-A-CACC-GCG--TTT-TTTGT-------------------G-T---CTTT-CATTGT-A-T-TTA-T-T------TT--ACCAAGATCGAGCAG-C-AAATCAtt
gi|2 : aacAGAACTCTTTCGT-CGATT---GTTACTGAGCATACGATTACT-CGT-TTTAATTTCAA-TACCTGTCTTTTT-TTTGCAAACCGCTC-TTTG-C---GTT---T-TT-CATTGT-C-T-TTT-T-G------TT--ATCAAGATCAAGCTGTTGAAAACAtta
gi|20 : -CGATT---GATACTGATTATAAGTTTACT-TGT-TTTAATATTAA-TG----------T-A-TGTAAACTG------TA-C---G-TC--C-TT-TATTGTAA-T-TTA-T-T------TT--ATTAAGACttgga
gi|21 : gaaactgta-CGT-TTTAATTTTAA-TACCTGTC--TTT-ACTGTAAGTCACCCCTTTA-C---G-TA--T-TT-CGTTGT-C-T-TTT-C-T------TT--ATTAAGA-CGAGCTGTA-AGAACA
gi|22 : -TTTAATTTTAA-CGCCTGTC--TAT-AT-GTAAACTTCTCTTTAG-T---G-TA--T-TT-CATTGT-C-T-TTTTC-T------TT--ATCAAGACTGGACTGTC-AAAGCAttggg
gi|23 : T-TTTAATTTGCA-TTCGTGTC--TTT-ATTG-AAACTTCCCTTTTG-C---T-T---C-TTTCATT-----T-TTT-T-T------TT--ATCAAATTCAAGCTGTC-AAACCAttg
gi|24 : TACATCGCCCCTTTA-C---G-T---C-TTTCGTTGT-C-T-TTT-C-T------TT--ATCAAGACCGAGCTGTC-AAAACAttag
gi|25 : tgaccatatattgaactcaaTTTAA-TACCTGTC--TTT-ATTGTAAACCGCCCTTTTA-C---G-TA--T-TT-CATTGT-C-T-TTC-C-T------TT--ATCAAGACCGAGCTGTC-AAAACAttggaa
gi|26 : TTTTAA-TATCTGTC--TTT-ATTGTAAACTGCCCCTTTG-T---G-T---CTTT-CATTGT-C-T-TTT-C-T------TT--GTCAAGACCGCGCTGTC-AAAATAttc
gi|27 : CTGTCGT-CGATT---GACACTGATCATAAGTTTACC-C---------------TAGCTGTC--TTT-ATTGTAAACCG
gi|28 : caAGAGAGCTCTGTCGT-CGATT---GATACTGATCATGAGTTTACT-CGT-TTAAATTTTAA-Tac
gi|3 : aaAGAAAATTCCGTCGT-CAATT---GATACTGACCAT--GTTTACCTCGT-TTTATTCTAAA-TACATGTC--TTTTATTGTAAACC----TTTT--T---G-T---C-TTTCAATGT-C-T-TTT-T-T------TTT-ATTAAGACTGAGCTGTC-AAAACA
gi|4 : aAGAGAACGCTGTCGT-CGATT---GATACTGATCATAAATTTACC-CGT-TTTAGTTTTAA-TACCTGTC--TTT-ATTGTAAACCGCCCTTTTG-C---A-T---C-TC-CATTGC-C-T-TTT-C-T------TT--ATCAAGACCGAGCTTTC-AAAACAttggg
gi|5 : AGAAAACTCTATTGA-CGGTT---GACATTGGTCATTAATTTACA-AGT-TTCAATTGTAA-TACCTGTC--TTT-ATTGTAAACCGCCCTTTTG-C---G-T---CATT-CAATGT-A-T-TTT-C-T------TT--ATCAAGACCGAGCTGTC-AAAat
gi|6 : GAACGCTATTGT-TGATT---GATACTGATCATTAGTCTATC-AGT-TTTAATTTTAA-TACCTGTC--TTT-ATTGTAAATCATTCTTTTG-C---A-T---CTTT-TACTGT-C-T-TTT-CTT------TT--ATAAAGATGGAGCTGTC-AAAACActtg
gi|7 : AGAGAACTCTGTCAT-CGATT---AATACTGATTATATGTTTACC-TGT-TTTAAATTTGA----CTGTC--TTT-ATTGTGAGCTGCCCTATTGTT---G-C---C-TT-CATCGT-C-T-TTT-C-T------TTA-ATCAAGATCAAGATGTC-AAAA
gi|8 : CTATCGC-CGATT---AATACTGATTATAAGTTGACC-GGT-TTTATTTTTA--TACCTGTC--TTT-ATTGTTAACAGCTATTTAG-C---G-TA--T-TT-CATTGT-C-TATTT-T-T------TT--A-AAAGACCCAACTATC-ATAACAa
gi|9 : AACTCTGTCGGACGTTTTCGGA-ACT-ATCGCATTTGTACA-AGTGTTTATTTTT-----CTTGTT--TAT-ATTATAAAGCGTTCTTTTC-T---A-T---C-TT-TACT-T-A-A-TTT-C-TG-----TT--A--AA---CGAGCTGTC-AAAAttggt
Alignments
lowQualScore : 22222
lowQualScore : 2 333 1 33 1 0 0 1 0 22 1 00 333333 1 22222 4 1 1 1 1 4 666666 55 1
lowQualScore : . ... . .. . . . . . .. . .. ...... . ..... . . . . . . ...... .. .
lowQualScore : 1 555 0 55 6 6 3 5 2 11 5 99 888888 5 00000 6 5 5 5 5 6 000000 22 7
consensus : AGAGAACTCTGTCGT-CGATT---GATACTGATCATAAGTTTACC-CGT-TTTAATTTTAA-TACCTGTC--TTT-ATTGTAAACCGCCCTTTTG-C---G-T---C-TT-CATTGT-C-T-TTT-C-T------TT--ATCAAGACCGAGCTGTC-AAAACA
Reference ( family-82 ) : AGAGAACTCTGTCGT-CGATT---GATACTGATCATAAGTTTACC-CGT-TTTAATTTTAA-TACCTGTC--TTT-ATTGTAAACCGCCCTTTTG-C---G-T---C-TT-CATTGT-C-T-TTT-C-T------TT--ATCAAGACCGAGCTGTC-AAAACA
gi|1 : AGAGAGCTCCGTCGT-CGATT----ATACATATCACAAGTTTACT-CGT-TTTATTTTCTT-TATCTGTC--TTT-ATTTCTAACCGCATATGTT-C---A-TC--C-TT-CATTGT-C-T-TTT-C-T------TTTAATCAAGACCGAGTTGAC-AAAACA
gi|10 : AGAGAACACTGTCGT-TGATT---GGTACTGATCATACGTTTATT-CAT-TTTA--TTTAACTATCTGTT--TTT-ACTGTAAACCA---------------------TT-CATTGT-C-G-TTT-CTT------TT--ATCGACACCGAGCTGTC-AAAttgg
gi|11 : AGGGAAGTCCA-CGT-TGATT---GTTACTGATCAT---------------TTAATTTTAA-TACCTGTC--TTT-ATTGTAAA----CCTATTG-C---G-TC--C-TT-TATTGT-C-T-TAT-CTT------TT--AGC-TGACTGAGCTGTC-AAAACAgtc
gi|12 : aAACTCTGTGGT-CGATT---GATACTGGTCATAG---------GT-TTTAATTTTGA-TA--TGTC--TTT-ATTGTAAACCGCACTTTTG-C---A-T---CTTT-TATTGT-C-T-TTT-A------------ACCATGAAC--ACTGTC-AAAttgc
gi|13 : cTGA-CATACGCTTATC-CGT-TTTAATGTTAA-TACTCGTC--TTT-ATTGTAAACCGGCCTTT-------G-TTCCC-TT-CAATGT-C-T-TTT-C-TTCTGTATT--ATCAAGACCGAGCTGTC-AAAATAcattg
gi|14 : AGAAAACTTTGTTGT-CGATT---GATACTGATAACAAGCT--CC------TTA----------------------ATTGTAAACCACCTTTTTG-CACTG-C---CTTT-CATTGT-CTT-TTT-C-A------TT--ACCAAGTCCGAGCTGTC-AAActg
gi|15 : aaAGAGAACTCTGCCGT-CGATG---GATACTGATCGTAAGTTCGCC-CGT-TTTAATTTTAA-TGCCT----------------------TTTTTG-T---G-T---CTTT-TATTTT-G-T-TGT-C-T------TT--ATCGATATCGAGCTGTC-AAAca
gi|16 : gaGATT---GGTACTGACGATACGTTTACC-CGT-TTAAATTTTAA-TATC-GTT--ATT--TTTTAAAACGCCCTTTCT-C---G-T---CATT-CGTTGG-C-T-TTT-C-T------TT---TCGATAACGA
gi|17 : ctagcgcaAGAGAACACTGTCGT-CGATT---GGTACTGATCATAAGTTTACC-CGT-TTTTATTT--------------TTT-A--ACATACCGTC-----------------T-TT-CAT------T-TTT-T-T------TT--ATTAAGACCGAGCTGTC-AAAACAaat
gi|18 : T-TTTAATTTTAG-TTCCCGTC--TCT-ATTGCAAACCGCTCTTTTG-G---G-T---CATT-CATTGT-A-T-TTT-C-C------TT---TCAAGACAGAGCTGTG-AAAACAttgag
gi|19 : aaagagaactctgtcgttaGAGAACTCTGTCGT-CGATT---AATACTGATCATAAG------------TTAAGTGT-A-CACC-GCG--TTT-TTTGT-------------------G-T---CTTT-CATTGT-A-T-TTA-T-T------TT--ACCAAGATCGAGCAG-C-AAATCAtt
gi|2 : aacAGAACTCTTTCGT-CGATT---GTTACTGAGCATACGATTACT-CGT-TTTAATTTCAA-TACCTGTCTTTTT-TTTGCAAACCGCTC-TTTG-C---GTT---T-TT-CATTGT-C-T-TTT-T-G------TT--ATCAAGATCAAGCTGTTGAAAACAtta
gi|20 : -CGATT---GATACTGATTATAAGTTTACT-TGT-TTTAATATTAA-TG----------T-A-TGTAAACTG------TA-C---G-TC--C-TT-TATTGTAA-T-TTA-T-T------TT--ATTAAGACttgga
gi|21 : gaaactgta-CGT-TTTAATTTTAA-TACCTGTC--TTT-ACTGTAAGTCACCCCTTTA-C---G-TA--T-TT-CGTTGT-C-T-TTT-C-T------TT--ATTAAGA-CGAGCTGTA-AGAACA
gi|22 : -TTTAATTTTAA-CGCCTGTC--TAT-AT-GTAAACTTCTCTTTAG-T---G-TA--T-TT-CATTGT-C-T-TTTTC-T------TT--ATCAAGACTGGACTGTC-AAAGCAttggg
gi|23 : T-TTTAATTTGCA-TTCGTGTC--TTT-ATTG-AAACTTCCCTTTTG-C---T-T---C-TTTCATT-----T-TTT-T-T------TT--ATCAAATTCAAGCTGTC-AAACCAttg
gi|24 : TACATCGCCCCTTTA-C---G-T---C-TTTCGTTGT-C-T-TTT-C-T------TT--ATCAAGACCGAGCTGTC-AAAACAttag
gi|25 : tgaccatatattgaactcaaTTTAA-TACCTGTC--TTT-ATTGTAAACCGCCCTTTTA-C---G-TA--T-TT-CATTGT-C-T-TTC-C-T------TT--ATCAAGACCGAGCTGTC-AAAACAttggaa
gi|26 : TTTTAA-TATCTGTC--TTT-ATTGTAAACTGCCCCTTTG-T---G-T---CTTT-CATTGT-C-T-TTT-C-T------TT--GTCAAGACCGCGCTGTC-AAAATAttc
gi|27 : CTGTCGT-CGATT---GACACTGATCATAAGTTTACC-C---------------TAGCTGTC--TTT-ATTGTAAACCG
gi|28 : caAGAGAGCTCTGTCGT-CGATT---GATACTGATCATGAGTTTACT-CGT-TTAAATTTTAA-Tac
gi|3 : aaAGAAAATTCCGTCGT-CAATT---GATACTGACCAT--GTTTACCTCGT-TTTATTCTAAA-TACATGTC--TTTTATTGTAAACC----TTTT--T---G-T---C-TTTCAATGT-C-T-TTT-T-T------TTT-ATTAAGACTGAGCTGTC-AAAACA
gi|4 : aAGAGAACGCTGTCGT-CGATT---GATACTGATCATAAATTTACC-CGT-TTTAGTTTTAA-TACCTGTC--TTT-ATTGTAAACCGCCCTTTTG-C---A-T---C-TC-CATTGC-C-T-TTT-C-T------TT--ATCAAGACCGAGCTTTC-AAAACAttggg
gi|5 : AGAAAACTCTATTGA-CGGTT---GACATTGGTCATTAATTTACA-AGT-TTCAATTGTAA-TACCTGTC--TTT-ATTGTAAACCGCCCTTTTG-C---G-T---CATT-CAATGT-A-T-TTT-C-T------TT--ATCAAGACCGAGCTGTC-AAAat
gi|6 : GAACGCTATTGT-TGATT---GATACTGATCATTAGTCTATC-AGT-TTTAATTTTAA-TACCTGTC--TTT-ATTGTAAATCATTCTTTTG-C---A-T---CTTT-TACTGT-C-T-TTT-CTT------TT--ATAAAGATGGAGCTGTC-AAAACActtg
gi|7 : AGAGAACTCTGTCAT-CGATT---AATACTGATTATATGTTTACC-TGT-TTTAAATTTGA----CTGTC--TTT-ATTGTGAGCTGCCCTATTGTT---G-C---C-TT-CATCGT-C-T-TTT-C-T------TTA-ATCAAGATCAAGATGTC-AAAA
gi|8 : CTATCGC-CGATT---AATACTGATTATAAGTTGACC-GGT-TTTATTTTTA--TACCTGTC--TTT-ATTGTTAACAGCTATTTAG-C---G-TA--T-TT-CATTGT-C-TATTT-T-T------TT--A-AAAGACCCAACTATC-ATAACAa
gi|9 : AACTCTGTCGGACGTTTTCGGA-ACT-ATCGCATTTGTACA-AGTGTTTATTTTT-----CTTGTT--TAT-ATTATAAAGCGTTCTTTTC-T---A-T---C-TT-TACT-T-A-A-TTT-C-TG-----TT--A--AA---CGAGCTGTC-AAAAttggt
blockSeqs : A TCG C TC G C TT T GCACT T TCCC T A T A T T TCTGTA T G
blockSeqs : . . G C . . . . GTT . CC T . . . . T G A .
blockSeqs : . . C C . . . . GC . CT T . . . . T . . .
blockSeqs : . . A C . . . . GC . CT . . . . . . . . .
blockSeqs : . . A C . . . . GT . CT . . . . . . . . .
blockSeqs : . . C C . . . . TC . CA . . . . . . . . .
blockSeqs : . . A C . . . . GG . CA . . . . . . . . .
blockSeqs : . . A T . . . . GC . CT . . . . . . . . .
blockSeqs : . . C C . . . . AC . CC . . . . . . . . .
blockSeqs : . . A C . . . . AC . AT . . . . . . . . .
blockSeqs : . . A C . . . . GT . AT . . . . . . . . .
blockSeqs : . . A C . . . . GC . AT . . . . . . . . .
blockSeqs : . . A A . . . . AC . CT . . . . . . . . .
blockSeqs : . . A A . . . . AC . CA . . . . . . . . .
blockSeqs : . . A T . . . . GT . CT . . . . . . . . .
blockSeqs : . . T G . . . . GC . AT . . . . . . . . .
blockSeqs : . . A A . . . . GC . T . . . . . . . . .
blockSeqs : . . T . . . . . GC . T . . . . . . . . .
blockSeqs : . . . . . . . GC . C . . . . . . . . .
blockSeqs : . . . . . . CT . C . . . . . . . . .
blockSeqs : . . . . . T . C . . . . . . . . .
blockSeqs : . . . . . . C . . . . . . . . .
blockSeqs : . . . . . . C . . . . . . . . .
blockSeqs : . . . . . . C . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : .
blockSeqCons : **
originalCons : AGAGAACTCTGTCGT-CGATT---GATACTGATCATAAGTTTACC-CGT-TTTAATTTTAA-TACCTGTC--TTT-ATTGTAAACCGCCCTTTTG-C---G-T---C-TT-CATTGT-C-T-TTT-C-T------TT--ATCAAGACCGAGCTGTC-AAAACA
finalCons : AGAGAACTCTGTCGT-CGATT---GATACTGATCATAAGTTTACC-CGT-TTTAATTTTAA-TACCTGTC--TTT-ATTGTAAACCGCCCTTTTG-C---G-T---C-TT-CATTGT-C-T-TTT-C-T------TT--ATCAAGACCGAGCTGTC-AAAACA
Alignments
lowQualScore : 22222
lowQualScore : 2 333 1 33 1 0 0 1 0 22 1 00 333333 1 22222 4 1 1 1 1 4 666666 55 1
lowQualScore : . ... . .. . . . . . .. . .. ...... . ..... . . . . . . ...... .. .
lowQualScore : 1 555 0 55 6 6 3 5 2 11 5 99 888888 5 00000 6 5 5 5 5 6 000000 22 7
consensus : AGAGAACTCTGTCGT-CGATT---GATACTGATCATAAGTTTACC-CGT-TTTAATTTTAA-TACCTGTC--TTT-ATTGTAAACCGCCCTTTTG-C---G-T---C-TT-CATTGT-C-T-TTT-C-T------TT--ATCAAGACCGAGCTGTC-AAAACA
Reference ( family-82 ) : AGAGAACTCTGTCGT-CGATT---GATACTGATCATAAGTTTACC-CGT-TTTAATTTTAA-TACCTGTC--TTT-ATTGTAAACCGCCCTTTTG-C---G-T---C-TT-CATTGT-C-T-TTT-C-T------TT--ATCAAGACCGAGCTGTC-AAAACA
gi|1 : AGAGAGCTCCGTCGT-CGATT----ATACATATCACAAGTTTACT-CGT-TTTATTTTCTT-TATCTGTC--TTT-ATTTCTAACCGCATATGTT-C---A-TC--C-TT-CATTGT-C-T-TTT-C-T------TTTAATCAAGACCGAGTTGAC-AAAACA
gi|10 : AGAGAACACTGTCGT-TGATT---GGTACTGATCATACGTTTATT-CAT-TTTA--TTTAACTATCTGTT--TTT-ACTGTAAACCA---------------------TT-CATTGT-C-G-TTT-CTT------TT--ATCGACACCGAGCTGTC-AAAttgg
gi|11 : AGGGAAGTCCA-CGT-TGATT---GTTACTGATCAT---------------TTAATTTTAA-TACCTGTC--TTT-ATTGTAAA----CCTATTG-C---G-TC--C-TT-TATTGT-C-T-TAT-CTT------TT--AGC-TGACTGAGCTGTC-AAAACAgtc
gi|12 : aAACTCTGTGGT-CGATT---GATACTGGTCATAG---------GT-TTTAATTTTGA-TA--TGTC--TTT-ATTGTAAACCGCACTTTTG-C---A-T---CTTT-TATTGT-C-T-TTT-A------------ACCATGAAC--ACTGTC-AAAttgc
gi|13 : cTGA-CATACGCTTATC-CGT-TTTAATGTTAA-TACTCGTC--TTT-ATTGTAAACCGGCCTTT-------G-TTCCC-TT-CAATGT-C-T-TTT-C-TTCTGTATT--ATCAAGACCGAGCTGTC-AAAATAcattg
gi|14 : AGAAAACTTTGTTGT-CGATT---GATACTGATAACAAGCT--CC------TTA----------------------ATTGTAAACCACCTTTTTG-CACTG-C---CTTT-CATTGT-CTT-TTT-C-A------TT--ACCAAGTCCGAGCTGTC-AAActg
gi|15 : aaAGAGAACTCTGCCGT-CGATG---GATACTGATCGTAAGTTCGCC-CGT-TTTAATTTTAA-TGCCT----------------------TTTTTG-T---G-T---CTTT-TATTTT-G-T-TGT-C-T------TT--ATCGATATCGAGCTGTC-AAAca
gi|16 : gaGATT---GGTACTGACGATACGTTTACC-CGT-TTAAATTTTAA-TATC-GTT--ATT--TTTTAAAACGCCCTTTCT-C---G-T---CATT-CGTTGG-C-T-TTT-C-T------TT---TCGATAACGA
gi|17 : ctagcgcaAGAGAACACTGTCGT-CGATT---GGTACTGATCATAAGTTTACC-CGT-TTTTATTT--------------TTT-A--ACATACCGTC-----------------T-TT-CAT------T-TTT-T-T------TT--ATTAAGACCGAGCTGTC-AAAACAaat
gi|18 : T-TTTAATTTTAG-TTCCCGTC--TCT-ATTGCAAACCGCTCTTTTG-G---G-T---CATT-CATTGT-A-T-TTT-C-C------TT---TCAAGACAGAGCTGTG-AAAACAttgag
gi|19 : aaagagaactctgtcgttaGAGAACTCTGTCGT-CGATT---AATACTGATCATAAG------------TTAAGTGT-A-CACC-GCG--TTT-TTTGT-------------------G-T---CTTT-CATTGT-A-T-TTA-T-T------TT--ACCAAGATCGAGCAG-C-AAATCAtt
gi|2 : aacAGAACTCTTTCGT-CGATT---GTTACTGAGCATACGATTACT-CGT-TTTAATTTCAA-TACCTGTCTTTTT-TTTGCAAACCGCTC-TTTG-C---GTT---T-TT-CATTGT-C-T-TTT-T-G------TT--ATCAAGATCAAGCTGTTGAAAACAtta
gi|20 : -CGATT---GATACTGATTATAAGTTTACT-TGT-TTTAATATTAA-TG----------T-A-TGTAAACTG------TA-C---G-TC--C-TT-TATTGTAA-T-TTA-T-T------TT--ATTAAGACttgga
gi|21 : gaaactgta-CGT-TTTAATTTTAA-TACCTGTC--TTT-ACTGTAAGTCACCCCTTTA-C---G-TA--T-TT-CGTTGT-C-T-TTT-C-T------TT--ATTAAGA-CGAGCTGTA-AGAACA
gi|22 : -TTTAATTTTAA-CGCCTGTC--TAT-AT-GTAAACTTCTCTTTAG-T---G-TA--T-TT-CATTGT-C-T-TTTTC-T------TT--ATCAAGACTGGACTGTC-AAAGCAttggg
gi|23 : T-TTTAATTTGCA-TTCGTGTC--TTT-ATTG-AAACTTCCCTTTTG-C---T-T---C-TTTCATT-----T-TTT-T-T------TT--ATCAAATTCAAGCTGTC-AAACCAttg
gi|24 : TACATCGCCCCTTTA-C---G-T---C-TTTCGTTGT-C-T-TTT-C-T------TT--ATCAAGACCGAGCTGTC-AAAACAttag
gi|25 : tgaccatatattgaactcaaTTTAA-TACCTGTC--TTT-ATTGTAAACCGCCCTTTTA-C---G-TA--T-TT-CATTGT-C-T-TTC-C-T------TT--ATCAAGACCGAGCTGTC-AAAACAttggaa
gi|26 : TTTTAA-TATCTGTC--TTT-ATTGTAAACTGCCCCTTTG-T---G-T---CTTT-CATTGT-C-T-TTT-C-T------TT--GTCAAGACCGCGCTGTC-AAAATAttc
gi|27 : CTGTCGT-CGATT---GACACTGATCATAAGTTTACC-C---------------TAGCTGTC--TTT-ATTGTAAACCG
gi|28 : caAGAGAGCTCTGTCGT-CGATT---GATACTGATCATGAGTTTACT-CGT-TTAAATTTTAA-Tac
gi|3 : aaAGAAAATTCCGTCGT-CAATT---GATACTGACCAT--GTTTACCTCGT-TTTATTCTAAA-TACATGTC--TTTTATTGTAAACC----TTTT--T---G-T---C-TTTCAATGT-C-T-TTT-T-T------TTT-ATTAAGACTGAGCTGTC-AAAACA
gi|4 : aAGAGAACGCTGTCGT-CGATT---GATACTGATCATAAATTTACC-CGT-TTTAGTTTTAA-TACCTGTC--TTT-ATTGTAAACCGCCCTTTTG-C---A-T---C-TC-CATTGC-C-T-TTT-C-T------TT--ATCAAGACCGAGCTTTC-AAAACAttggg
gi|5 : AGAAAACTCTATTGA-CGGTT---GACATTGGTCATTAATTTACA-AGT-TTCAATTGTAA-TACCTGTC--TTT-ATTGTAAACCGCCCTTTTG-C---G-T---CATT-CAATGT-A-T-TTT-C-T------TT--ATCAAGACCGAGCTGTC-AAAat
gi|6 : GAACGCTATTGT-TGATT---GATACTGATCATTAGTCTATC-AGT-TTTAATTTTAA-TACCTGTC--TTT-ATTGTAAATCATTCTTTTG-C---A-T---CTTT-TACTGT-C-T-TTT-CTT------TT--ATAAAGATGGAGCTGTC-AAAACActtg
gi|7 : AGAGAACTCTGTCAT-CGATT---AATACTGATTATATGTTTACC-TGT-TTTAAATTTGA----CTGTC--TTT-ATTGTGAGCTGCCCTATTGTT---G-C---C-TT-CATCGT-C-T-TTT-C-T------TTA-ATCAAGATCAAGATGTC-AAAA
gi|8 : CTATCGC-CGATT---AATACTGATTATAAGTTGACC-GGT-TTTATTTTTA--TACCTGTC--TTT-ATTGTTAACAGCTATTTAG-C---G-TA--T-TT-CATTGT-C-TATTT-T-T------TT--A-AAAGACCCAACTATC-ATAACAa
gi|9 : AACTCTGTCGGACGTTTTCGGA-ACT-ATCGCATTTGTACA-AGTGTTTATTTTT-----CTTGTT--TAT-ATTATAAAGCGTTCTTTTC-T---A-T---C-TT-TACT-T-A-A-TTT-C-TG-----TT--A--AA---CGAGCTGTC-AAAAttggt