lowQualScore : 1111111111111111111111111111 111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111 11111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111
lowQualScore : 1 1 111 11 0000000000000000000000000000 2 555555555555555 1 1 4444444444444 22 555555555555555555555555555 1111111 11111 000000000000000000000000000000000000000000000000 333 55555555555555 1 22 88888888888888888888888888888888888888888888888888888 1 33333333333333333333333333333 11 444444444 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 4444444444 11 2222 11 22 3333 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111 1 1 222222 11 1 1 3333333333333 111 11111 22 99999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 3333333 111 222222222222 999999999999999999999999 6666666666666 5555555555555555555555555555555555555555555555555555555555555 11 1 1 11 33 1 88888888888888888888888888888888888888888888 222222222 22 1 1 11 99999999999999999999999999999999999999999999999999999 11 1111 1 33333333333333333333333333 22222 11 22222222 11 1 111 222222 22222222222222 1 3333 111 1 1 666666666666666666666666666666666666666666666666666666666666 1 1111 555555555 22 22 2222 1 1 55555555555555 111 1111 7777777777777777777777777777 44444444444444444444 7777777777777777777 3333333333333333 222222222222222222 1 777777777777777777777777777777777 1 11111 99999999999999999999999999999999999 44 11
lowQualScore : 88 6 2 6 4 6 4 88 6 5 7 2 000 44 1111111111111111111111111111 6 6 6 4 111111111111111 5 6 6 5 7777777777777 1 3 11 0 0 5 8 88 0 666666666666666666666666666 4444444 1 33333 5 22 0 333333333333333333333333333333333333333333333333 555 6 33333333333333 7 6 2 6 6 88 00000000000000000000000000000000000000000000000000000 5 3 77777777777777777777777777777 0 6 6 66 7 1 8 77 7 888888888 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6 7 6 3 0000000000 1 11 8888 88 6 1 66 8 1111 0 0 6 0 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 66666 0 7 333333 11 0 6 2 5 6666666666666 1 1 1 000 1 44444 66 6 00000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 6 11 3333333 6 1 888 666666666666 4 6 333333333333333333333333 99 9999999999999 4 6 1111111111111111111111111111111111111111111111111111111111111 22 6 5 5 6 22 6 44 7 99999999999999999999999999999999999999999999 6 0 666666666 22 3 3 6 55 6 33333333333333333333333333333333333333333333333333333 66 9999 4 4 1 3 9 0 3 66666666666666666666666666 0 66666 00 11111111 5 44 1 1 5 99 333 3 1 000000 6 99 0 1 5 33333333333333 3 1 7777 1 6 111 0 0 0 666666666666666666666666666666666666666666666666666666666666 5 6 4 7777 000000000 6 6 3 4 5 66 11 7 1111 5 6 6 1 6 6 5 77 1 66 0 66 77 0 11111111111111 00 111 888 4 3333 5555555555555555555555555555 33333333333333333333 4 4 5 4 0000000000000000000 333 8888888888888888 55 1 999999999999999999 4 4 4 222222222222222222222222222222222 1 4 3 5 22222 3 00000000000000000000000000000000000 1 66 44
lowQualScore : .. . . . . . . .. . . . . ... .. ............................ . . . . ............... . . . . ............. . . .. . . . . .. . ........................... ....... . ..... . .. . ................................................ ... . .............. . . . . . .. ..................................................... . . ............................. . . . .. . . . .. . ......... ............................................................................................ . . . . .......... . .. .... .. . . .. . .... . . . . ..................................................................................................................................................... ..... . . ...... .. . . . . ............. . . . ... . ..... .. . ................................................................................... . . .. ....... . . ... ............ . . ........................ .. ............. . . ............................................................. .. . . . . .. . .. . ............................................ . . ......... .. . . . .. . ..................................................... .. .... . . . . . . . .......................... . ..... .. ........ . .. . . . .. ... . . ...... . .. . . . .............. . . .... . . ... . . . ............................................................ . . . .... ......... . . . . . .. .. . .... . . . . . . . .. . .. . .. .. . .............. .. ... ... . .... ............................ .................... . . . . ................... ... ................ .. . .................. . . . ................................. . . . . ..... . ................................... . .. ..
lowQualScore : 55 0 5 0 0 0 0 00 0 0 0 5 000 55 5555555555555555555555555555 7 0 0 7 333333333333333 0 0 0 0 7777777777777 0 7 00 2 8 6 0 88 8 111111111111111111111111111 3333333 0 88888 6 22 8 222222222222222222222222222222222222222222222222 000 0 55555555555555 0 0 5 0 0 55 55555555555555555555555555555555555555555555555555555 0 7 77777777777777777777777777777 7 7 0 77 7 0 3 33 3 333333333 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 0 0 2 0000000000 0 00 0000 66 4 0 00 0 8888 6 2 0 2 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 00000 0 0 555555 22 2 0 2 4 7777777777777 7 7 7 000 7 33333 00 0 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 8 0 88 2222222 5 2 888 666666666666 0 0 000000000000000000000000 00 5555555555555 0 0 5555555555555555555555555555555555555555555555555555555555555 00 0 0 0 0 00 0 00 0 00000000000000000000000000000000000000000000 0 7 777777777 33 3 3 7 00 7 44444444444444444444444444444444444444444444444444444 55 4444 0 8 4 3 6 8 2 77777777777777777777777777 2 22222 66 88888888 7 44 7 3 3 22 888 9 7 999999 7 22 7 7 7 44444444444444 0 0 5555 4 0 555 5 0 2 777777777777777777777777777777777777777777777777777777777777 8 0 8 0000 222222222 0 0 3 3 7 66 33 1 8888 7 0 0 0 7 0 4 99 9 99 4 99 22 4 00000000000000 55 000 888 3 8888 4444444444444444444444444444 99999999999999999999 4 4 0 1 5555555555555555555 888 4444444444444444 55 5 555555555555555555 0 0 4 777777777777777777777777777777777 4 1 4 0 55555 6 22222222222222222222222222222222222 0 00 55
consensus : NNNNNNNNNNNNNNNNTCACATGTGCNGTAGCACTATGTGAGGTGTATTNAATTACTNTTCGCAAATTTCACCAAGTANAGCTCNNGTTACGCATGACTATTCAGTAATGCTCTGTTGCCNTTNNNGTNNAACATAGCGACTGGTTGATTNGCTGATTGGCNCACTGATTGATTATTTTAAAAGTTCATAACCTACATTTNAATT------GT--ANC--CACATTTTAACCAAGTATTTCCTGAGCGCCGCATGGCAAGCTCCAATATNGACGAAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGT-ATT-TGTCTTGTGCTTGGATGTC-TG-------------------CGTGT---T---GTTTCCTGTTGGTTTCACATTTGTTT--ACTTTTTATCTTCCATCAAAGTATACCCCC--------------TTTN-GACGTTGATTAAATAATTTCAGCGTACCTTTTATAGGTTTTCGGGTGTCCACAAATGATATTGTCATTGTTTCAATGAAATTGTTCGCTGTATANTCGAGCGTANTGTCCTTGATAGCGAGATAACCCTTGTATTACCGTNTTCTCAATGCGCATCTNTTTCATTTCATTGTACANGTGGGAAAAGCTCC-CAGCGNGTAC--TCGG----TGG---TTAGCTATAAAGGAGCTGACCGCNTTGCGTTATATTT-NTTTAATCT--GC-ACAAAGTGCTTAGTATC-CAATC-G--A-AAAATG---A--AT---------------TTCGTGAACTTTNAATAATGGTGATTTGA-GAC------A----------TACATGGGCATTATCAGCTTTCATG---ACTAGCGTGAATTCAGATT--AGTT----GTTCATGCGGGGCAGTCAGATTTTGATCCCCA-TTGCCAACCGAAATTCAATGTCTTCCTGAATACCACCCGTGA---------GTG--CG----TTGANNATTNC-ACGCCGTTN-TTTAAT-----AGTC---A---GTATCATAT---TAC-GG---C------GATCAATCT------TTTATAG----GCTCCATACCAGTGCTGA--TCTC-AGTTTA-CTGTAAAC--GACCGACATCTACAATACCACATGCAACTAGTTTTAAAAATA------------TAGGATCAGCA---CGA-----GACAACATAATATATGTAGTACTACAT--C---ACT-TC----T-TCA------TA--TGTA-AGG-A-T--C-----CAAN-GCACGACTCCCTGGAA--C-CG--A--AGTACTATAAGGTNAAACA-AT-G-GACTTTCAAGATCCTCGGTATA-A-CGT-ACNGGAANTCGAACCCAGGTCCTCTGGNTTNTGGNTATTGAGCCCATCAACNTAAACACTAGACAGACCAAAATCNACAGGTCCGTTGGAAATCAAAATAAATCCAAGGTTCTCGNCCAATGCGCCAGTGCAACCNNACCGTGTTA-GTATTTAGTGACATAACAATTATAGTGTCTCTGTGACAAAGTGGTTAAGATTTCTCT-------CTGCCAATCGCTATCCCACCACTATATGGTACTAAAATAGAACCGTCGATTCAAAA-TA-A-CGAAC-ATCG-AA-AGGCAAATATCTNANACAGATC-CG-GAGAAGTAAAATTCTGCC--TACCAGTANCCGTCCATAAAAGCCT-CG-GGAGTCC-TTCCTCCAAAATAAAAGTTAA-AAATATGAAACCAACAGGAAACATTAA-CACGAGG-CCCTGGGCACAAAACACAGACATCCACGCACAAGACACAATCACAAGCAAACAAT---A---TATA-A-CCAGAGTAAAAAGACACCACAAACATTA--AATAA-GCTGGCCGGA-----GGGGT-CAG--TTGCCAAACG-GCA-ACAG-GGG-----ATTTGAAACCTTGTTTAAGG-TGCACCAAACCTCACTTTTACCCTCCTC-TTAAAATCAGAAATTGCCATAT----------AACCTCTTTNTAA--AC---TGCACACTATACATAAG-GCTC-GG--CTCTCACANAACGAATAC----TTTTTT-CTGTC--AAGAAGCTATCACGCAGG-TTTACAATATGTCCGTGTTTTTATCC---GGGTGCCCTCTCGTACCTGCAAACAATTCCCGGAGAACCA-TGGCTCTTCCAT--CACAAATACAAGCT--GAAAAG--TC-GTCATATTTGTAACAC-AG--AG--TCTNACCAATTCTTCCTCTNANAAGACATG---TTTTATGACTACTAGACAATCGG-C-GAC-AAC--------AG--------ACGGACGA-----C--CTA--AC-----T-TAAAA-CAATANACATCTTCTATGATGTGT-CG-ATAG--ACATGAATTGCGAATAGGGGTCATTATT---------TTATAG-GGGT--CACT------------------TTTTCACA-GGA-G----GG-TCA--C---TTTTA--CGCGT----AGGGTGTCGTTATTTTT-AC-----AGCAATTTGTGACCGTG-----GGG-TCA--TTT--AAACG--TNA---AATGACCGG-GGGTCANNTTCTG
Reference ( gi|1 ) : CTGTCTGTCACATATTTCACATGTGTGGTAGCATTATGTGAGGTGTATTCAACTACTATTTGTAAATTTCACCAAGTATAGCTCATATTACACATGAGTATTCAGTAAAGCTCTGTTGCCCTTTAAGTAGAATATAGCGA--------TTTGCTGATCG--T------TTGATTATTTTAAAAGTT-ATAACCTATATCTTAATT------GT--ATCAGCACAGTTTAACTAGGTATTTCATGAACGCCACACGATAAGCTTCAATATGGACACAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGT-ATT-TGTCTTGTGCTTGGATGTC-TG-------------------CATGT---T---GTTTCCTGTTGGTTTCACATTTGTTT--ACTTTTTATCTTCCATCAAAGTATGCCCCC--------------TTT--GACGTTAATTAAATGATTTCACCGTAACTTTTA---ATTTTCAAGTGTCCACAAATGATATTGT-ATT----CAATGAAAATGTTTGTTGTATAGTCAAGTATTTTGTCC-------CG-------TCT-GTATCATCATAATCTCAATGTGCA-------CATTTCATTGTACAGGTGGGAAAAGCTCCATGGCATATACTATTGGAGAATGGAGATCAGCTATAGAGGAGCTGACCACATTGTGTTATATAT-TTTTAATGT--ACCATAAAGTGCTTAGTATTGTAGTCTGCTACAAAGTA-TTAGTAT---------------TTTATGAACGTTAATTAATCATGATTTGA----------A----------TACATAGGCATAATCAACTTTCATG---AATGACATGAATTCAGATT--AGTT----GTTCATGCGGTGCAGCCAGATTTTGATTGCCA-TTGCCAATAGTAATTCAATGTCTTTCTGAAT---------GA---------GTG--CA----TTGAGGATTAT-ATATCATTT-TATAAT-----AATT---A---GTATCATAT---TAA-GGG--C------GGTCAATCT------TTTGTAG----GCTC--TACGAGTGTTGA--TCTC-AATTTA-CTGAAAAC--AGCTGACATCTACAATACAACGTGTAAATAGTTTTAAAAATA------------TAGGATCAGCA---CAA-----GACAACATAATACTTGTAGTATTACAT--C---ACT-TC----T-TCA------TAC-TGTA-AAG-A-T--T-----CAAA-GCACAACTCCCT--------TA--A--AGTGCTATGGGGTAAAACAGAT-G-GACTTTCAAAATTCTCTGTATACATCGTGACTGGAAATTGAACCCAGGT-----GAATTATGGAT-------TCATTAACACAAATAT----CAAA----AATCTACAGATCTGTAGGAAGTCAAAAGTAATCCCAGATTTTACTCCAA--GACCAGTGCAATGAAACCATAAAAAGTATTTAGTGGTATAACAGTTAGAGGGCCTCTGTGACGGAGTAGTATAGATATCTCTCTGTCAGCTGCCAGTCACTGTCTCATCGTTATAAGAT----AAATAGAATCATCAACTCAGAACTA-A-CAAAC-GTTG-AA-AGGCAAAGATCTTACACAGATC-CGTAAAAAGTCAAATTCTGTTAGTACCAATAGCCGTCTATAGTAGCCT-TGTGGAGTCC-TTCCTCCAAAATAAAAATTAA-AAATACGAAACCAACAGGAATCATTAA-CACCAAG-CCCTGGGCATAAAACACAGACATTCGCACACAAGACACAATTACAAGCAAACAAC---A---TATA-A-TCAGAGTAAAAAGAAACCACAAACATTA--AATTA-GCTGGTCAGA-----GGGGT-CAG--TTGCCAAATG-GCA-TCAG-GGG-----ATTTGAAACCTTTTTTAAGG-T-TACCAAACCCCACTTTTACTCTCCAC-TTAAAATCAGAAATTGCCATAG----------AATGTCTTTATAA--AC---TGGACACTGTACATATG-GCTC--G--CTCTCACATATCAAACAC----TTTTTG-CTTTA--AAGAAGTTATCGCACAGG-TC-ACAATATGTATGTGTTTTTATCA---GGGTGCCCTCTCTTACCTGCAAATAATTCCCAGAGAACCA-TGACTCTTCCAT--CAAAAATACAAGCT--GAAAAG--TC-ATCATATTTGTAACAT--G--AG--TCTTACCAATTCTTCCTCTTACAAGACATG---TTTTATAACTGTCAGACAATCAG--------AC--------AG--------ACGGACGA-----C--TTA--A------T-TAAAA-CAATATACATTTTCTCTGATGTGT-TA-ATAGAAACATGAATTGCAAATAGGGGTCATTATT---------TCATAGTGGGT--CATT------------------TTTTCACA-GCA-G----CGTTTA--C---TTTTA--CTTAT----AGGGTGTCATTATATTT-AC-----AGCAATTTGTGACCATG-----GGG-TCA--TTT--AA-----TAAA--AATGACTGGCAGATCAGTTTCTGT
gi|3 : TCACATGTGCTATAGCACTATGTGAGGTGTATTCAATTACTATTCGCAAATTTCACCAAGTATAGCTCATGTTACGCATGACTATTCAGTAATGCTCTGTTGCCCTTTACGTACAATATAGCGACTGGTTGATTTGCTAATTG--A------TTTATTATTTTAATAGTTCATTACTTACATTTTAATT------GT--ACCTTTTCATTTTAACCAAGTATTTCCTGAGCATCGCATTGCAAGCTCCAATATAGACGAAGAGGATGACTCTGGTTATATAATGTGGTTTGCTTGT-ATT-TGTCTTGTGCTTGGAT-TCATG-------------------TGTGT---T---GTTTCCTTTTGGTTTCACATTTGTTT--AC-ATTTATCTTCCCTCTAAGTTTGCCCCCTTGTGGACTTACCTTTT--GGTGTTGATTAAATAATTTCAGTGTACCTTTTA---ATTTTCGGATGTCCACAAATGA-----T-ATT----CAATGAAATTGTTCGTTGTATAGTCGAGCGTAATGTCCTTGATAGCT-------CTT-GTATTAT-GTATTCTCAATGCGCATTTGTTTCATTT-ATTGTACACGTGGGACAAGCTCCCCAGCGGGTATT-TC------TGGAGATTAGCCGTGAAGAAGCTGACTGCCTTGTGTTATATATATTTTAATCT--GC---AAAGTGCTTAGTAT--CAATC-G----AAAG-----ACAAT---------------GTTATGAACTTTAGATAATGATGATATGAAGAC------A----------TACATGGGCATTATCAGCTTTCATC---ACTAGCGTGAATTCAGATTCAAGTTAGTGGTTCATGCGGGGCAGTCAGGTTTTGTTCCCTA-TTGCCAACCGAAAGTCAATGT
gi|14 : gtctgTCACATGTGCGGTAGCACTATGTAAGGTGTATTGAATTATTTTTCGTAAATTTCACCAAATAAAGCTTTAATTACGCATGACTATTCAGTAATGCTCTGTTACCATTACAGTTAAACATAGTAA--------TTGGTTGATTGGCTCACTGATTGATTATTTTAAAAGTT-AAAGACTACATTTAAATT------GTACATC--CACATTTTAATCAAATATTTCCTGAGCGCCACATGG-AAGCTTCAATATTGACGAAGTGGAAGACTTTGGTTTTATACTGTGGTTTGCTTAT-AAA-TGTTTTCTACTTGG----------------------------ATGT---T---GTTT------------ACATTTG-------------TCTTCCATCAAAGTATACCCCT--------------TTTG-GACGTT
gi|19 : gGATCATTTCAAAAGTTCATAACCTACATTTCAATTTCAATTGT--AACAACACATTTTAACCAAGTATTTCCTGAA--------GGT---CTCCAATATGGACGAAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGA-ATT-TGTCTTGTGCTTGGATGTC-TG-------------------CGTGT---T---GTTTCCTGTTGGTTTCACATTTGTTT--AC-TTTTATTTTCAATCAACATATACGCCC--------------TTTA-GA--TTAATtttaggttaa
gi|2 : AGGAGGACTCTGGTTATATAATGTAGTTTACTTGT-ATT-------GTGCTTGGATGGC-TG-------------------CGTGT---T---GTTTCCTGTTGGTTTCACAAACGTTT--ACTTTT-ATTTTCCATTAAAGTATACGTCC--------------TTTTGGAC-----TTA-----------CGT----TTTATAGGTTTTCAGGTGTTCATAAATGATATTGTCATTGTTTCAATGAAATTGTTCGCTGTATATTCGAGCATACTGTCC-------TGAGATAACTCTTGTATTACCGTTTTCTCAATGAACATCTTTTTC-TTTCATTGTACAGGTCGAAAAAGCT-----GCACA-------GG----TGG----TA-CTATAAAAGAGCTGACCGCATTGCGTTGTATTT-GTTT--TGTCGGCTACAAAGTGCTTAGTATC--AATC----AAAAGATA------AT---------------TTCATGAACTTTGAATAATGGTGATTTGA----------AAACAGTATAATACATGGGCATTATCAGCTTTCATG---ACTAGTGTGAATACAGATT--AGTT----GTTAATGTGGGGCAGACAGATTGTGATC-CCACTTGCCAACCGGAAGTCAATGTCTTCCTGAATCTCTCCCGTGA---------GAG--CG----TT-ATGATCTT-ACGTCGTTT-T-TAAT-----TGTC---A---GTATCATAT---CCC-GG---C------GAACAATCT------TTTGTAG----ACTT--TACGAATGTTGA--CCTCCAGTTTA-CTATAAAC--GACGGACATCTAC--TACCACATGTAATTAGTTTTAAAAATAAAGTAAAAAATATAGTATCATCAGAACGA-----GACAACATTATATATGTAGTACCACAT--C---CCG-TC----T-TCA------TAC-TGTA-AAGCA----------CAAATGCACGACTCCCT--------GG--A--AATAGTACAGCGT--AAC--------ATTTTTATGATTCGCGGTATAgtttttatgtta
gi|11 : ACTC-AGTTATATA---TTGTTTGCTTGTGATTGTGCCTTGTGTGTGGATATT-TGTGTTTCGTGCCCATTGCCTCGTGTTAAT---GTTTCCTATTGGTTTC----TTGTTTTCAATTCTTA--TTCTA--GAGGAATGGCCCC--------------
gi|9 : accatccataaaagtcttgtgC-TG-------------------TGTGT---TAAAGTTTCTGGTTGGTTTCATATTTGTTT--ACTTCTaaaaagacaccacactcattaaataagctggccagagggtcagttgccaaattaccaccaggtgcactaaacctaacttctaccggcctcttaaaattagaaattgccatacagtctctttttaaaccactatacattggcttgaactctcacatatccaatactttttctgtctagaagctatcacacaggcttacaatttttccgtgcctttaa
gi|7 : ttttaaaactatatgatcagcatgagtcaatataataaatatagaactacctggcacatcctgttttacacatatagagtttagcaccgctgcaaaaaattcctggaaggctcaatatgtactatagggtccttgtacagggttaacccgaatccagaacttctggatattgagcccatcaacataaatactagacagaaatctacagatccgtgattttcgtctaatggaagtgcaatcacccgtgttagtatttagtgacataacaattatagtgtctctgtgacaaagtggttaagatttctcttcactatcctattactatatggtactaaaatagaaccatcgattcaaaactatacgaacttcgaaaaggtaatgatctgacacagatcggctgattctaacaggagaagcttacgggagtctcctcaacCAAGTGGGTAAAGCTCCACAGCAAGTACAATTGGAGA-------TCAGCTATAAAGGAGCTGATTGCTTTGCATTATATTT-CTGTAATCG--GCGACAAAGTGATAAGTATTCTAGTATGCTACAAAATGCTTAGTATGAAGCGAAATGTAATTTCGT-AACTTTTAATAATGGTGATTTGACGACATTATGA----------TACATGGGCATTATCAGCTT-CATG---TCTAACGTGAATTCAGATT--AGTT----GTTCATTCGGAACATTCAAATTTTGATCCCCA-TCGCCAACCAAAATCAAATATTTTCCTAAATACCACCTGTGA---------TTT--TA----TTG-GCATTTC-ACGCCGTTG-TTTATT-----A-CC---A---GTATCGTAT---TAA-GT---C------GGCCAATCT------TTCACAG----GCT-----------------TTTC-AGTTTA-CCGTAAAC--GACCGACATCTGC--TACAACAAACAACTAGT----------------------TAGGATCAACA---CAA-----GACAATATAATATATGTAGTACTATAT--C---CCT-TC----T-TCA------TAG-TGTA-AGG-C-A--C-----CGGT-GGACGACTCCCA--------GG--A--AGTACTATAGGATAAAATATAT-A-Ggac
gi|13 : TTCATGGCAAGTG---TGAATGTAATTC--AGTT----GGTCATAC------------TTTCGATCTCTA-ATGTCACCCACAATTCAATGTATTCCTGAATACAACCTGTGG---------GTGGGTA----T---GGTTTGTTACACCGTCA-TTTAAT-----AGTC---A---GTTCCATAT---TAC-GGC--C------G-TCAATAC------GTAATAG----GCTC--TACCAGT
gi|12 : cgttattaGAATTAAGATT--AGTTTT--GTAAATGCGGGTCAGCCTGACTTTGATCCCCA-TTGCCAACCGAAATTCAATGGCTTCCTTAATACTAT----GACTTCCACTTGTG--CGGGTGTTGATTATTAC-GTA--ATTTATACAATCATGTAACT---ACCAGTTTTATATATCTGC-GGT--CTTCCAAGCTCAAGCT------T-----G----GTTCCATACCAGTGCTGA--TCTC-AGTATA-CTGTAAACGAAG--GACATCTACAATATCACATGCAACTAGTTTTAAGAATA------------TAGTCACAGCA---CGA-----GACAAGATTATATATGTAATACTACAT--C----CTGTT----TGTCG------TA----TA-AGG-AGT--G-----TACA-GCACGACTCCCaaaatgccacatgtaaccagtttttaaaacaaaaacaaaacaattcacaacaacaaaatatatgtagtactccccatttttacattgtgtgtatcaccaatacacattttcctggaaagcccaacaagtactataaggttaaacaataggaccggaaattggatccagttctacggaaa
gi|24 : atgcattataatattttatgcccagcgcAT-----AATTGCCA---GTATTATAT---GATTGGGTTC------GAT-AGTCTGTATGATTTATAACTCAGTTCCATACCACTACTGACCTCTC-A---TAGCTGTAATC--AACTGGCATCTTTAATAACACATCAAACTAGTTTTAAGAATAT-----------TAGAATCAGCA---CGA-----GATAA
gi|13 : TAAAATGCCACATGTAACCAGTTTTTAAAACA-------------AAAA-CAAAA---CAATTCACAACAACAAAATATATGTAGTACT-CCC--C---ATT-TT----T-ACA------T---TGTG-TGT-A-TCAC-----CAAT-ACACATTTTCCTGGAAAGCCCAACA--AGTACTATAAGGTTAAACA-ATAG-GAC
gi|9 : cgttattattcatggcaagtgtgaatgtaattcagttggtcatactttcgatctctaatgtcacccacaattcaatgtattcctgaatacaacctgtgggtgggtatggtttgttacaccgtcatttaatagtcagttccatattacggccgtcaatacgtaataggctctaccagTTTTAAAACTA------------TATGATCAGCA---TGA-----GTCAATATAATAAATATAGAACTACCTGGC---ACA-TCCTGTT-TTA------CACATATA-GAG-T-T--T--------A-GCACCGCTGCAA--------AA--A--ATTCCTGGAAGGCTCAATA--T-G-TACTAT-AGGGTCCT---TGTACAGGGT---T--AACCCGAATCCAGA-------ACTTCTGGATATTGAGCCCATCAACATAAATACTAGACAGA----AATCTACAGATCCGT---------------------GATTTTCGTCTAATGGA--AGTGCAATCAC-CCGTGTTA-GTATTTAGTGACATAACAATTATAGTGTCTCTGTGACAAAGTGGTTAAGATTTCTCT--------------TCACTATCCTATTACTATATGGTACTAAAATAGAACCATCGATTCAAAACTATA-CGAAC-TTCGAAA-AGGTAATGATCTGACACAGATC---------GGCTGATTCT---------AACAG--G-----AGAAGCTTACG-GGAGTC---TCCTC---AACAGAAGTAAACAAATATGAAACCAACCAGAAACTTTAA-CACcggaaattggatccagttctacggaaa
gi|17 : ATA------------AAGGATCACCA---CGA-----GACAACATATCAGATGTAGTACTACAT--TCGTACT-T-----T-TCAGATAATTAG-TGTATAAT-A-T--TATCACCAAT-GCACGACTTCCTGGAATTCTCA--ACAAGTATCATAATGTAAAACAAAT-ACGATTTTCGAAATTCCCGGTAT----CGTGACGGGAAATCGAACCCAGGTCCTCTGGATTGTGGTT-------TCATTAACCTAAACAC----TAAACCAAAATCAACAGGTCCGTTGGAAATCAAAATAAATCCAAAGTTCTTCACCAA--CGCCAGTGCAAC-CAACCATAacaggac
gi|30 : -G-GACTTTCAAAATCCTCAGTATA-ATCGTTACCGGAAGTCGAAt
gi|21 : CTGCCAATCGCTATCTCACCA-------AT----A--TAGAATCGTCGATTTAA----A-A-CAAAC-ATTG-AATATGCCAATATC-TAAACAGATC-CA-GAGAAGTAAAAGACTGCTTCTACCGGTATCTG-CCATAACAGCC
gi|4 : CTCAAAAGTA-AACAATCTATTG-AA-AGGCAAATATCTAAGAAAGATAACGTAAGAAGTAAAATTCCGCCAATACCAGTAACCGTCCAT--------------AATTT-TTTTT------------TTAA-AACTATGAA-CCAACAGGAATCATAAAATACAAGG-CCCTGGACACAAAATACAGACAT---------ATACACAGC-ACAAGCAAACACT---A---AATA-A-CCATCGTAAAAAGACACCACAAACATTA--AATaaatgagtatctgtgggatttaaacctttttaatcctactaggagaggcttcctccaaaatataagttaaacataag
gi|11 : CCATCCATAAAAGTCT-TGTGGGGGCCATTCCTCTAGAATAAGAATTGA-AAACAAGAAACCAATAGGAAACATTAA-CACGAGG-CAATGGGCACGAAACACAAATATCCACACACAAGGCACAATCACAAGCAAACAAT---A---TATA-A--CTGAGTAAAAAGACACCACACTCATTA--AATAA-GCTGGCCAGA------GGGT-CAG--TTGCCAAAT---TA-CC------------------ACC-------AGG-TGCACTAAACCTAACTTCTACCGGCCTC-TTAAAATTAGAAATTGCCATAC----------AGTCTCTTTTTAA--AC-------CACTATACAT-TG-GCTT--GAACTCTCACATATCCAATAC----TTTTT--CTGTC--TAGAAGCTATCACACAGGCTT-ACAATTTTTCCGTGCCTTTAaannnnnnnnnnacaaacactaaataaccatcgtaaaaagacaccacaaacactaaataagctggccggagcctcggagtgaaatgaaagcggcaacaggggatttaatttgaaaccttgtttaagatgcacaaaacctcacttttagaatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttccggtgaactatcacaaatacaagctgaaagttgtcatgtttgtaacaggagagtttgaccaatactaactcttagaagacatgtttttttatgattactagaacagacggacgacatgacttaaaaaaatagacatcttctatggtatatgtgatagacatgaattgcaaacgttattttatgggggtcactttttcacaggaggaatctatatataaac
gi|21 : aC-TTCCTCCAAAATATAAGTTAA-ACATAa
gi|19 : ctgccaatcgctatctcaccaatatagaatcgtcgatttaaaacaaacattgaatatgccaatatctaaacagatccagagaagtaaaagactgcttctaccggtatctgccataacagccaaatgagtatctgtgggatttaaacctttttaatcctactaggagaggAAAATAAAAGTAAACAAATGTGAAACCAACAGGAA------------------------ACAACACGCAGACATCCAAGCACAAGACA-AATT-CAAGCAAACCACATTA---TATA-A-CCAGAGTag
gi|18 : gatcatttcaaaagttcataacctacatttcaatttcaattgtaacaacacattttaaccaagtatttcctgaaggtctccaatatggacgaagaggagg-AAATAAAAAA--AATA--AAACAT-AA-C-CCAAGGCCCTGTGC-CAAAACAGATACATCTACACACAAGACACAATCACAAGCGAACAAT---AATATATG-A-CCAGCGTAATAAGACACCATAAACATTATTAAGTATGCCGGTCGGA-----GGGGT-CAG--TTGTCAAACG-GTA-ACAG-GGG-----ATTTGAAACCTTGTTTAAGG-TACACCATACCTCACTTTTcaatcaacatatacgccctttagattaatgtttttatgtta
gi|28 : CACACTCACAAGCAAACAGT---A---TATACACTC-------AAAGATACATTAAACATTA--AATAT-GCTGGCCAAA-----TGGtccggatgccctctcgtacttgcaaaccaagtcttcctttcaga
gi|5 : gATA-A-CCAGAGTAAAAATACACCACAAACATTA--TATAA-GCTGGCCGGA-----TGGGT-CAA--TTGCCAGACG-GCA-ACA--GGC-----ATTTGAAACTT
gi|26 : TA-A-CCAGAGCAAAAACACACCACAAACATTA--AATAA-GCTGGCCGGA-----GGGGT-AAA--CTGCCAAACG-GCA-ACAG-GGG-----ATTTGAAACCTTGTTTAAAG-caccttaaaataagaaattgccatataacctttttatactgtacaacaaaaggctctcaacgagcactttttttctgtcaagagactgtcacgtacgtttatgtccgtgttttatctgggtccctctcgcacctgcaaacaattcccgaagaactatggctcttccatcacaaatacaagctgaaaagtcgttatatttgtaacatgagagtctaaccaagtcttcctgtaagaagacatgttttatgactactagacaaccagacgggcgaacatacggacggtctaacttataacaatatacatcttctatgatgtgcgatagacacgagttgcgaataggcgttattatagtgggtcactttttcacaggagggtgtgaggtgtcgttatttttacagcaatttgtgaccgtgagcccgggtcatttttaaacgtctaataattaccgggggtcatattctgacgggaaataaagatcgggggtaatatctgaggtgggagtgg
gi|4 : gA-GCTGGCCGGAGCCTCGGAGT-GAA--ATG-AAAGCG-GCA-ACAG-GGGATTTAATTTGAAACCTTGTTTAAGA-TGCACAAAACCTCACTTTTAc
gi|6 : ctcaaaagtaaacaatctattgaaaggcaaatatctaagaaagataacgtaagaagtaaaattccgccaataccagtaaccgtccataattttttttttaaaactatgaaccaacaggaatcataaaatacaaggccctggacacaaaatacagacatatacacagcacaagcaaacactaaataaccatcgtaaaaagacaccacaaacattaaataannnnnnnnnnacaaacactaaataaccatcgtaaaaagacaccacaaacactaaataGCCGGA-----AGGGTACCGCTTTGC--AACG-GCAACCTT-GGT-----ATTTAAAACCTTGTTTAAGGAG-CACTTAACCTTACTTTAACCC-CTTC-TTAGTACCAGAAATTGTGATATCTTTTTCACCAACATTTTCTTAA--ACCATTGCACATTCTACTTAGT-ATTCAGG--CTCTTACAAAATGAATAC----CTTTTT-TTCTGCCATGAAGCTATCACACTGG-TTTACAACGTGTCCGTGTTTTTATCC---GGGTGTCCCCTCATACCTGCAAACAATTCCTGCAGATCAA-TTGCTCTTCC-T--CATAAATACAAGCT--GAAATG--TC-GTCATACTTGTAAGAC--GAAAA--TCTAATCAATTTATCCTCTGATAAAACATA---TTTTGTGACTATC-GACGATCGGACGGACGAAC--------AG--------ACGGACGA-----C--CTA--AC-----T-TGAAG-CA--ATACACTTTTTCTG-TGGG-----ATAG--ACATAAATTGCAAACAGAGATCATTATT---------TTATAG-GGGT--GACT------------------TTTTTACA-GGA-G----GGGTCA-------TTTA--TTTACGCGAAGTGTGTCGTTATTTTT-AA-----AGAAATTTGTGACC--G-----GGG-TGA--TTTTCAAACG--TCAACTAATGACTGgaatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttccggtgaactatcacaaatacaagctgaaagttgtcatgtttgtaacaggagagtttgaccaatactaactcttagaagacatgtttttttatgattactagaacagacggacgacatgacttaaaaaaatagacatcttctatggtatatgtgatagacatgaattgcaaacgttattttatgggggtcactttttcacaggaggaatctatatataaac
gi|21 : GCCAAATGAGTA-TCTGTGGG-----ATTT-AAACCTTTTTtggacattttatgacgtgaa
gi|8 : ctgccaatcgctatctcaccaatatagaatcgtcgatttaaaacaaacattgaatatgccaatatctaaacagatccagagaagtaaaagactgcttctaccggtatctgccataacaGG-TGTACCAAACCTCACTTTTACCCTCCTC-TTAAAATCAAACATTGCCACAT----------AATCTCTTAAAAACCAC---TGCCCACCATATATAAG-GCTCGAG--TTCTCACATAACGAACGCAATATTTCTG-CC-----AAGAAGCTATCACGCA-G-TC-Aaatcctactaggagaggcttcctccaaaatataagttaaacataag
gi|5 : CTTCACCTTAAAATAAGAAATTGCCATAT----------AACCTTTTTATA----C---TGTACA----ACAAAAG-GCTC--------TCA---A-CGAGCAC----TTTTTTTCTGTC--AAGAGACTGTCACGTACG-TT-----TATGTCCGTGTTTT-ATCT---GGGT-CCCTCTCGCACCTGCAAACAATTCCCGAAGAACTA-TGGCTCTTCCAT--CACAAATACAAGCT--GAAAAG--TC-GTTATATTTGTAACATGAG--AG--TCTAACCAAGTCTTCCTGTAAGAAGACATG---TTTTATGACTACTAGACAACCAG--------AC--------GGGCGAACATACGGACGG-----T--CTA--AC-----T-TATAA-CAATATACATCTTCTATGATGTG--CG-ATAG--ACACGAGTTGCGAATAGG---CGTTATT-----------ATAGTGGGT--CACT------------------TTTTCACA-GGA-G----GG-------------------TGT----GAGGTGTCGTTATTTTT-AC-----AGCAATTTGTGACCGTGAGCCCGGG-TCATTTTT--AAACGTCTAAT--AATTACCGG-GGGTCATATTCTGagaagctatcacgcagtcaagaagctatcacgcaggtttacaatatgtccctgttttatctatttgccctctcgtacctgcaacaattcccggagaaccaaggctttccaatcacaaatacaagctaaagtcgtcatatttataactaattcctcctcttcgaatacatgttttatgactacctaacaatcagacggacgaattaacttaaaacaatagccatcttctagaaatcgggatagatatgaattgcgaatatgggtcattattttataggggtcacttttccacgcgtagaatttcgttagtaaccgggggtcataataatgaccatggatcactttctctgaggatttaatgaccagggatcaatttgt
gi|10 : ataaccagagtaaaaatacaccacaaacattatataagctggccggatgggtcaattgccagacggcaacaggcatttgaaaACACTGTGT-TAAGAGCTCTAG--TGTTCACAGAGCAAATAC----TTTTTT-TTGTT--CGGAAGCTATCACTCTGG-TTTACAATATGTCCGCGTGTTCATCAACCGGATGTACTCTCACACATTTAAACGGTTCCCGG-GAAGCACTGGCTTTTCCTTTCCAAAAA--CAATGT--GAAAAAAATC-GTCTTATTTGTAACAC--G--A-----------ATTCTTCCTCTGATAAGACATG---ATTTATGACTACTAAACAATCGG--------GC--------GG--------ACGAACAAAAGAGCGATGA--A------CGTAAAAGCAATGCACATCTTCTC------------------ACATAAA----ATATAGGG--------------------------GGT--CACT------------------TTTTTACA-GGA-G-------TCA--T---TTTTATGCTAAT-------GTGTCGCTA-ATTTCAC-----AGCCATTGATGGCCA-------GTG-TCT--TTT--AG-----TGAacgggaaataaagatcgggggtaatatctgaggtgggagtgg
gi|8 : --AAGAAGCTATCACGCAGG-TTTACAATATGTCCCTGTTTT-ATCT---ATTTGCCCTCTCGTACCTGCAA-CAATTCCCGGAGAACCA-AGGCTTTCCAAT--CACAAATACAAGCT----AAAG--TC-GTCATATTTATAAC-----------------TAATTCCTCCTCTTCGAATACATG---TTTTATGACTACCTAACAATCAG--------AC--------------------GGACGA-----A--TTA--AC-----T-TAAAA-CAATAGCCATCTTCTA-GAAATCG-GG-ATAGA--TATGAATTGCGAATATGGGTCATTATT---------TTATAG-GGGT--CACT------------------TTTCCACGCGTA-G----AATTT-------CGTTA--GTAAC----CGGGGGTCATAATAATG-ACCATGGATCACTTT----CTCTG-----AGG---A--TTT---------------AATGACCAG-GGATCAATTTtgtgaagtaatgacgggtggtcaaatagtgtta
gi|15 : ggtgtaccaaacctcacttttaccctcctcttaaaatcaaacattgccacataatctcttaaaaaccactgcccaccatatataaggctcgagttctcacataacgaacgcaatatttctgccaagaagctatcacgcagtcaagaagctatcacgcagtcTATCACGTATG-TTTACACTATGTTCATGTTTTTACCG---GTGTGCCCTTTCGTACCTGCAAACAATTCCCGGAGAACGA-AGGTACTTCAAT--CACAAATGCAAGCT--GAAAAG--CCGAAC-TATTTGTAACACGAG--AG--TCCAACAAATTCTTTCTCTTAGAGTACATG---TTTTATAAATACTAAACAGTCAG--------ATGGACGAAAAG--------ACGGACGA-----C--CTAACA------T-T-AAA-CAATATATATCTTCTATGATGT-T-CG-ATAG--ACATGCATTGCGAGTAGAGGGGAT--GT---------TCG----GGGG--CATT------------------TTCTAACG-Ggt
gi|18 : cTTTT-TCC---GGATGCCCTCTCGTACTTGCAAAgaaattatgacaggggtcaatttctgagggtgtcgaaatttccgtt
gi|16 : aaataaaaaaaataaaacataacccaaggccctgtgccaaaacagatacatctacacacaagacacaatcacaagcgaacaataatatatgaccagcgtaataagacaccataaacattattaagtatgccggtcggaggggtcagttgtcaaacggtaacaggggatttgaaaccttgtttaaggtacaccatacctcacGAGAACCA-TGGCTGTTCCTT--CGCAAATACAAGCT--GAAAAG--TC-GTCATATTTGCAACACAAG--AA--CCTTATTAACTCTTCCTCTGATCAG--ATG---CTTTATGATTACTAGACAATGAGACTGACGAAC--------AG--------ACGGACG-----------A--A------C-TAACA-AAGTAGACATATTCCATTACGTG---AGATAG--ACATGAATTGTAAATAGTGGTCACTGTT---------GAATGG-GGGTCACATTTTCACAGGAAAAAAAAAATTTTCGCA-GGA-G----GGATCACTC---TTTTA--CGCGT----AGGGTGTCGTTATTTTT-A--------CAATTTGTGACCccaagtcttcctttcaga
gi|4 : CTAT--CACAAATACAAGCT--GAAA-G--TT-GTCATGTTTGTAACAG--G--AGAGTTTGACCAATACTAACTCTTAGAAGACATGTTTTTTTATGATTACTAGA---------------AC--------AG--------ACGGACGA-----C--ATG--AC-----T-TAAAA-AAATAGACATCTTCTATGGTATATGTG-ATAG--ACATGAATTGCAAA-------CGTTATT---------TTATGG-GGGT--CACT------------------TTTTCACA-GGA-G----g
gi|22 : ctcaaaagtaaacaatctattgaaaggcaaatatctaagaaagataacgtaagaagtaaaattccgccaataccagtaaccgtccataattttttttttaaaactatgaaccaacaggaatcataaaatacaaggccctggacacaaaatacagacatatacacagcacaagcaaacactaaataaccatcgtaaaaagacaccacaaacattaaataannnnnnnnnnacaaacactaaataaccatcgtaaaaagacaccacaaacactaaataagctggccggagcctcggagtgaaatgaaagcggcaacaggggatttaatttgaaaccttgtttaagatgcacaaaacctcacttttagaatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttccggtgaaCAAACTTAAAAAAA--AC-ATCATATTTATAACAC--GCGAG--ATTCACCCATT-TTCCTCTAATATGACATG---TTTTACGACTACTGGACAACCGGGCGGATAAAC--------AA--------ACTGACGG-----C--CTG--GCCTATCT-TAAAA-CAATACACCTCTTCTATAATGTG--TG-ATAG--ACACGAACTGCAAATATGCGTCATgaatctatatataaac
gi|23 : cttataattcTATGACTACTAGACAATCAGCCGGACCAAC--------AG--------ACTGACGA-----C--CTA--AC-----T-TAAAA-TAAAAGACATTTTCCAAGATGTGT-AA-A---AGACATGAATTGCGAATAGAAGTCATTATT---------TAATAG-GGGT--CACT------------------TTTTCACA-GGAGG----CG-TCA--CTTTTTTTA--CGCGT----AAGATGTCGTT-T-TTT-AC-----AGCAAT
gi|20 : aACATCTTCTATGGTGAGT-GA----GAGACATGACTGGCAAATAAGGGTCATTATTAGAAATAAGTTATAAGAGGT--AATT------------------ATTTCACA-GAA-GGTGTCATTT-------TTTTA--CGCGT----AGTGTTTCGTTATTTTT-AC-----AGCCATTTGTG-CCAT
gi|25 : aTTATT---------TTATAGGGGGT--CACT------------------TTTTCAGA-GGA-G----GGGTCA--CA--TTCTA--CGCGA----AGAGTATCGTTATTTAT-AC-----ATCAATGTGGGACC--G-----GGGTTCA--Ttttctgacgtgagattatgaccgaggagtcgatttctaaggaggtatataaaaattacgtaacatc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|27 ): GGGGGTCACCTTTTTACGTGTGGAGTGTCGTTTTTTTTTACGTTAACTTGTGACCGATGATCATTTTCTAACGTGAAATACTGATTGGGG
Unaligned ( gi|29 ): GTCAGGAAGCTTTCAAGCGGTTTAACAGTATGTCCGTGTTTTATCT
Alignments
lowQualScore : 11111111111111111
lowQualScore : 4444444444 77777777 3333333333333333333 11 11 555555555555 1111111111111 3333 5555555555 22222222222222222 1 1111 7777777777777777777777777777777777 22222 666666666666666666666666 11 1 333 6666666666666666666666666 666666666666666666666 2222 33333333333 33333333333 3333333333333333 111111 1111 222 111111 111 222222222222 1111111111111111 3333333333333333333333333 77777777777777777 2222222 555555555 111 6666666666666666666666666 66666666 22222222222222222222 111 44444 222 1111 55555555 1 4444444 444444 11 1 1 1 22222222 44444444 1 1 33333 111 11 111 111111 222222 1 3333333333 111 1111 333 111 4444444444444444444 3333333333333333333 222222 888888888888888888888 22222222222 11111111111 555555555555555555555555555555555555555 4444444444444444444444444444444444444444444 111
lowQualScore : 1 1 1 0 1 222 1 333 22 0 9999999999 1 44444444 8 3 1 8888888888888888888 333 4 0 33 1 0 99999 0 66 5 8 8 0 111111111111 2222222222222 8888 0 3333333333 0 1 0 1 77777777777777777 2 1 3 5555 7 6 1 0000000000000000000000000000000000 55555 1 999999999999999999999999 33 1 0 2 222 5555555555555555555555555 2 2 1 000000000000000000000 5 1 99 3333 22 4 1 11 33333333333 4 1 1 88888 77777777777 8 1 77 3333333333333333 99 999999 1 4444 777 2 1 333333 6 777 6 1 3 555 44 1 999999999999 55 9999 0 66 888 0 6666666666666666 5 9999999999999999999999999 66 1 33333333333333333 7 6666666 3 000000000 1 777 1 1111111111111111111111111 0 1 0 88888888 1 0 33333333333333333333 0 0 111 44444 0 222 0 7777 3 3 88 4 00000000 4 0 0 0 2 5555555 0 0 777777 2 11 2 0 0 3 1 0 44444444 3 66 77777777 444 0 0 44444 0 8 222 4 1 6 4 0 3 6 3 77 4 3 3 3 44 7 11 99 0 1 111 5 5 555 888 777777 5 77 0 000000 1 1 0 3 1 0 1 5555555555 1 111 4444 3 1 4 3 2 6 666 3 2 222 6 6 4444444444444444444 8888888888888888888 3 5 5 888 5 5 3 99999 888888 0 4 1 1 777 111111111111111111111 4 1 0 4 1 22222222222 55 1 11 55555555555 7 3 3 555555555555555555555555555555555555555 55 1 3 6666666666666666666666666666666666666666666 000 0 888 22
lowQualScore : . . . . . ... . ... .. . .......... . ........ . . . ................... ... . . .. . . ..... . .. . . . . ............ ............. .... . .......... . . . . ................. . . . .... . . . .................................. ..... . ........................ .. . . . ... ......................... . . . ..................... . . .. .... .. . . .. ........... . . . ..... ........... . . .. ................ .. ...... . .... ... . . ...... . ... . . . ... .. . ............ .. .... . .. ... . ................ . ......................... .. . ................. . ....... . ......... . ... . ......................... . . . ........ . . .................... . . ... ..... . ... . .... . . .. . ........ . . . . . ....... . . ...... . .. . . . . . . ........ . .. ........ ... . . ..... . . ... . . . . . . . . .. . . . . .. . .. .. . . ... . . ... ... ...... . .. . ...... . . . . . . . .......... . ... .... . . . . . . ... . . ... . . ................... ................... . . . ... . . . ..... ...... . . . . ... ..................... . . . . . ........... .. . .. ........... . . . ....................................... .. . . ........................................... ... . ... ..
lowQualScore : 0 0 0 7 0 777 0 000 00 7 0000000000 0 77777777 8 2 0 2222222222222222222 000 2 8 88 0 8 44444 8 44 6 0 8 8 222222222222 0000000000000 0000 7 7777777777 7 0 7 0 77777777777777777 0 0 7 7777 3 7 0 0000000000000000000000000000000000 00000 0 222222222222222222222222 55 0 0 5 555 0000000000000000000000000 0 5 0 222222222222222222222 2 8 22 3333 00 3 8 44 00000000000 6 0 4 66666 66666666666 8 0 77 5555555555555555 22 222222 8 2222 222 5 0 333333 7 555 7 7 7 333 77 0 333333333333 44 0000 4 99 888 3 0000000000000000 7 3333333333333333333333333 66 7 00000000000000000 5 2222222 2 111111111 0 555 0 0000000000000000000000000 7 0 7 33333333 0 7 33333333333333333333 7 7 333 33333 7 333 7 7777 0 0 00 0 00000000 0 7 7 7 0 3333333 7 7 222222 0 22 0 0 0 0 0 8 22222222 0 55 00000000 888 6 8 22222 8 2 444 0 4 7 4 8 7 7 5 77 6 2 8 2 00 8 00 22 8 5 777 0 0 666 888 000000 7 99 7 777777 4 4 7 0 7 4 0 0000000000 0 888 8888 2 0 0 5 2 7 000 3 2 777 7 7 3333333333333333333 8888888888888888888 6 0 1 888 7 7 6 66666 333333 9 1 0 0 888 666666666666666666666 0 6 9 0 0 11111111111 00 0 11 00000000000 3 6 6 999999999999999999999999999999999999999 00 2 6 6666666666666666666666666666666666666666666 000 4 666 00
consensus : NNNNNNNNNNNNNNNNTCACATGTGCGGTAGCACTATGTGAGGTGTATTCAATTACTATTCGTAAATTTCACCAAGTATAGCTCATATTACGCATGACTATTCAGTAATGCTCTGTTGCCCTTTAAGTANAATATAGCGA-----TGATTTGCTGATCG------T-ATTGATTATTTTAAAAGTTCATAACCTACATTTTAATT------GT--ATCAGCA--CATTTTAACCAAGTATTTCCTGAGCGCCGCACGGTAAGCTCCAATATGGACGAAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGTATTTGTCTTGTGCTTGGATGTC-TGCGTGTTGTTTCCTGTTGGTTTCACATTTGTTTACTTTTTATCTTCCATCAAAGTATACCCCCTT-TGGAC------------GTTGATTAAATGATTTCA-CGTACCTTTTA---ATTTTCGGGTGTCCACAAATGATATTGT-A----TTCAATGAAATTGTTCGTTGTATAGTCGAGCGTANTGTCCT-------G------CTCTTGTATTACCGTATTCTCAATGCGCATCT-TTTCATTTCATTGTACAGGTGGGAAAAGCT-CCACGGCGNGTAC-AT--TGG----NGG---TCAGCTATAAAGGAGCTGACCG-----CATT---------------GCG------TTATAT-NTNTT-TAGTNTG-CTACAAAGTGCTTAGTATN-CAATC-G----AAAG-AT--A--ATTTCATGAACTTTAAATAATGGTGATTTG-A-GA-CA------T------ACATGGGCATTATCAGCTTTCATGNCTAGCGTGAATTCAGATT--AGTT----GTTCATGCGGGGCAGCCAGATTTTGATCCCCATTGCCAACCGNAATTCAATGTCTTCCTGAATAC---------CACCTGTGAGTGCGTTGATGATTT--T-------ACGCCGTCGTTTAATNGCCAGTATCATAT---T-AC--GG-----CGG--TCAATCT------TTCGTAG----GCTC--TACCAGTGCTGA--TCT-CAGTTTA-CTGTAAACGACCGACATCTACAATACCACATGCAACTAGTTTT------------AAAAATA-TAG---GATCAGCACGA--GACAA---CATAATATATGTAGTACTACAT--C---ACT-TC----T-TCA------TA-TGTA-AGGA-T-----CCAATGCACGACTCCCTG-AA-------CA--A--AGTACTATAGGGTAAAACA-A-T-G-GACTTTCAAAATTCTCGGTATA-ATCG-TGACNGG---AAATCGAACCCAGG-C---TGGATTNTGG-TATT----CCATTAACATAAATACTAGAC-----AAAATCTACAGATCCGT-GGAAGTCAAAA--AATCC-AGATTTTNCTCCAA-G-ACCAGTGCAATCAAACCGT-ATNAGTATTTAGTGGCATAACAGTTANAGNGCCTCTGTGACGGAGTGGTNNAGATNTCTCT-------CTGCCAGTCGCTATCTCATCGCTATATGGT----AAATAGAATCGTCGATTCAAAACTA-A-CAAAC-GTTG-AA-AGGCAAANATCTAACACAGATC-CGTGAGAAGTAAAATTCTG--C--CAGTACCAGTANCCGTCCATAANAGCCT-CGT-GGAGTCCTTCCTCCAAAATAAAAGTTAA-AAATANGAAACCAACAGG-AAACATTAA-CACAAGGCCCTGGGCACAAAACACAGACATCCACACACA--AGACA--CAATCACAAGCAAACAATA---TATA-AC-CAGAGTAAAAAGACACCACAAACATTA---AATAAGCTGGCCGGA-----GGGGT-CAG--TTGCCAAACGGCAACAGGGG-----ATTTGAAACCTTGTTTAAGGTGCACCAAACCTCACTTTTACCCTCCTCTTAAAATCAGAAATTGCCATAT----------AATCTCTTTATAA--AC---TGCACACTGTACATANG-GCTC-G-GCTCTCACATANCGAACAC--TTT-TTT-CTG-------------------TCAAGAAGCTATCACG-------------------CAGGTTTA-CAATATGTCCGTGTTTTTAT---CCGG-GTGCCCTCTCGTACCTGCAAACAATTCCCGGAGAACCA-TGGCTCTTCCATCACAAATACAAGCT--G--AAAAGTCGTCATATTTGTAACA-CGA-GAGTCTNACCAATTCTTCCTCTNANAAGACATG---TTTTATGACTACTAGACAATC-----GG--C--G-----ACGAACAGACGGAC-GACCTAACTTAAAA-CAATANACATCTTCTATG--ATGTGTC--GATAG--ACATGAATTGCGAATAGGGGTCATTATT---------TTATAG-G-GG-TCACTTTTTCACAGGA---------------------G-G-G-TCA--C---T--TTT--ACGCGTAGGGTGTCG-TTATTTTTACAGCAATTTGTGACCGTG-----GGGTCA--TTT--A--AACGT-GA---A---A---TG---ACCG-G-GGGTCANTTTCTG
Reference ( family-816 ) : NNNNNNNNNNNNNNNNTCACATGTGCNGTAGCACTATGTGAGGTGTATTNAATTACTNTTCGCAAATTTCACCAAGTANAGCTCNNGTTACGCATGACTATTCAGTAATGCTCTGTTGCCNTTNNNGTNNAACATAGCGACTGGTTGATTNGCTGATTGGCNCACTGATTGATTATTTTAAAAGTTCATAACCTACATTTNAATT------GT--ANC--CA--CATTTTAACCAAGTATTTCCTGAGCGCCGCATGGCAAGCTCCAATATNGACGAAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGTATTTGTCTTGTGCTTGGATGTC-TGCGTGTTGTTTCCTGTTGGTTTCACATTTGTTTACTTTTTATCTTCCATCAAAGTATACCCCCTT-TNGAC------------GTTGATTAAATAATTTCAGCGTACCTTTTATAGGTTTTCGGGTGTCCACAAATGATATTGTCATTGTTTCAATGAAATTGTTCGCTGTATANTCGAGCGTANTGTCCTTGATAGCGAGATAACCCTTGTATTACCGTNTTCTCAATGCGCATCTNTTTCATTTCATTGTACANGTGGGAAAAGCT-CC-CAGCGNGTAC--T--CGG----TGG---TTAGCTATAAAGGAGCTGACCG-----CNTT---------------GCG------TTATAT-TTNTT-TAATCTG-C-ACAAAGTGCTTAGTATC-CAATC-G----AAAA-ATG-A--ATTTCGTGAACTTTNAATAATGGTGATTTG-A-GA-CA------T------ACATGGGCATTATCAGCTTTCATGACTAGCGTGAATTCAGATT--AGTT----GTTCATGCGGGGCAGTCAGATTTTGATCCCCATTGCCAACCGAAATTCAATGTCTTCCTGAATAC---------CACCCGTGAGTGCGTTGANNATTN--C-------ACGCCGTTNTTTAATAGTCAGTATCATAT---T-AC--GG-----CGA--TCAATCT------TTTATAG----GCTCCATACCAGTGCTGA--TCT-CAGTTTA-CTGTAAACGACCGACATCTACAATACCACATGCAACTAGTTTT------------AAAAATA-TAG---GATCAGCACGA--GACAA---CATAATATATGTAGTACTACAT--C---ACT-TC----T-TCA------TA-TGTA-AGGA-T-----CCAANGCACGACTCCCTGGAA---C---CG--A--AGTACTATAAGGTNAAACA-A-T-G-GACTTTCAAGATCCTCGGTATA-A-CG-T-ACNGG---AANTCGAACCCAGGTCCTCTGGNTTNTGGNTATTGAGCCCATCAACNTAAACACTAGACAGACCAAAATCNACAGGTCCGTTGGAAATCAAAATAAATCCAAGGTTCTCGNCCAATGCGCCAGTGCAACCNNACCGT-GTTAGTATTTAGTGACATAACAATTATAGTGTCTCTGTGACAAAGTGGTTAAGATTTCTCT-------CTGCCAATCGCTATCCCACCACTATATGGTACTAAAATAGAACCGTCGATTCAAAA-TA-A-CGAAC-ATCG-AA-AGGCAAATATCTNANACAGATC-CG-GAGAAGTAAAATTCTG--C--C--TACCAGTANCCGTCCATAAAAGCCT-CG--GGAGTCCTTCCTCCAAAATAAAAGTTAA-AAATATGAAACCAACAGG-AAACATTAA-CACGAGGCCCTGGGCACAAAACACAGACATCCACGCACA--AGACA--CAATCACAAGCAAACAATA---TATA-AC-CAGAGTAAAAAGACACCACAAACATTA---AATAAGCTGGCCGGA-----GGGGT-CAG--TTGCCAAACGGCAACAGGGG-----ATTTGAAACCTTGTTTAAGGTGCACCAAACCTCACTTTTACCCTCCTCTTAAAATCAGAAATTGCCATAT----------AACCTCTTTNTAA--AC---TGCACACTATACATAAG-GCTC-G-GCTCTCACANAACGAATAC--TTT-TTT-CTG-------------------TCAAGAAGCTATCACG-------------------CAGGTTTA-CAATATGTCCGTGTTTTTAT---CCGG-GTGCCCTCTCGTACCTGCAAACAATTCCCGGAGAACCA-TGGCTCTTCCATCACAAATACAAGCT--G--AAAAGTCGTCATATTTGTAACA-C-A-GAGTCTNACCAATTCTTCCTCTNANAAGACATG---TTTTATGACTACTAGACAATC-----GG--C--G-----AC-AACAGACGGAC-GACCTAACTTAAAA-CAATANACATCTTCTATG--ATGTGTC--GATAG--ACATGAATTGCGAATAGGGGTCATTATT---------TTATAG-G-GG-TCACTTTTTCACAGGA---------------------G-G-G-TCA--C---T--TTT--ACGCGTAGGGTGTCG-TTATTTTTACAGCAATTTGTGACCGTG-----GGGTCA--TTT--A--AACGT-NA---A---A---TG---ACCG-G-GGGTCANNTTCTG
gi|1 : TCACATGTGTGGTAGCATTATGTGAGGTGTATTCAACTACTATTTGTAAATTTCACCAAGTATAGCTCATATTACACATGAGTATTCAGTAAAGCTCTGTTGCCCTTTAAGTAGAATATAGCGA--------TTTGCTGATCG------T--TTGATTATTTTAAAAGTT-ATAACCTATATCTTAATT------GT--ATCAGCA--CAGTTTAACTAGGTATTTCATGAACGCCACACGATAAGCTTCAATATGGACACAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGTATTTGTCTTGTGCTTGGATGTC-TGCATGTTGTTTCCTGTTGGTTTCACATTTGTTTACTTTTTATCTTCCATCAAAGTATGCCCCCTT-T-GAC------------GTTAATTAAATGATTTCACCGTAACTTTTA---ATTTTCAAGTGTCCACAAATGATATTGT-A----TTCAATGAAAATGTTTGTTGTATAGTCAAGTATTTTGTCC-------CG--------TCTGTATCATCATAATCTCAATGTGCA-------CATTTCATTGTACAGGTGGGAAAAGCT-CCATGGCATATACTAT--TGGAGAATGGAGATCAGCTATAGAGGAGCTGACCA-----CATT---------------GTG------TTATAT-ATTTT-TAATGTACC-ATAAAGTGCTTAGTATTGTAGTCTGCTACAAAGTATT-AGTATTTTATGAACGTTAATTAATCATGATTTG-A-----A------T------ACATAGGCATAATCAACTTTCATGAATGACATGAATTCAGATT--AGTT----GTTCATGCGGTGCAGCCAGATTTTGATTGCCATTGCCAATAGTAATTCAATGTCTTTCTGAA------------------TGAGTGCATTGAGGATTA--T-------ATATCATTTTATAATAATTAGTATCATAT---TAAG--GG-----CGG--TCAATCT------TTTGTAG----GCTC--TACGAGTGTTGA--TCT-CAATTTA-CTGAAAACAGCTGACATCTACAATACAACGTGTAAATAGTTTT------------AAAAATA-TAG---GATCAGCACAA--GACAA---CATAATACTTGTAGTATTACAT--C---ACT-TC----T-TCA------TACTGTA-AAGA-T-----TCAAAGCACAACTCCCT-----------TA--A--AGTGCTATGGGGTAAAACAGA-T-G-GACTTTCAAAATTCTCTGTATACATCG-TGACTGG---AAATTGAACCCAGG-----TGAATTATGG--ATT-----CATTAACACAAATATCA--------AAAATCTACAGATCTGTAGGAAGTCAAAAGTAATCCCAGATTTTACTCCAA-G-ACCAGTGCAATGAAACCATAAAAAGTATTTAGTGGTATAACAGTTAGAGGGCCTCTGTGACGGAGTAGTATAGATATCTCTCTGTCAGCTGCCAGTCACTGTCTCATCGTTATAAGAT----AAATAGAATCATCAACTCAGAACTA-A-CAAAC-GTTG-AA-AGGCAAAGATCTTACACAGATC-CGTAAAAAGTCAAATTCTG--T--TAGTACCAATAGCCGTCTATAGTAGCCT-TGT-GGAGTCCTTCCTCCAAAATAAAAATTAA-AAATACGAAACCAACAGG-AATCATTAA-CACCAAGCCCTGGGCATAAAACACAGACATTCGCACACA--AGACA--CAATTACAAGCAAACAACA---TATA-AT-CAGAGTAAAAAGAAACCACAAACATTA---AATTAGCTGGTCAGA-----GGGGT-CAG--TTGCCAAATGGCATCAGGGG-----ATTTGAAACCTTTTTTAAGGT-TACCAAACCCCACTTTTACTCTCCACTTAAAATCAGAAATTGCCATAG----------AATGTCTTTATAA--AC---TGGACACTGTACATATG-GCTC---GCTCTCACATATCAAACAC--TTT-TTG-CTT-------------------TAAAGAAGTTATCGCA-------------------CAGG-TCA-CAATATGTATGTGTTTTTAT---CAGG-GTGCCCTCTCTTACCTGCAAATAATTCCCAGAGAACCA-TGACTCTTCCATCAAAAATACAAGCT--G--AAAAGTCATCATATTTGTAACA-T---GAGTCTTACCAATTCTTCCTCTTACAAGACATG---TTTTATAACTGTCAGACAATC-----AG---------------ACAGACGGAC-GACTTAA-TTAAAA-CAATATACATTTTCTCTG--ATGTGTT--AATAGAAACATGAATTGCAAATAGGGGTCATTATT---------TCATAGTG-GG-TCATTTTTTCACAGCA---------------------GCG-T-TTA--C---T--TTT--ACTTATAGGGTGTCA-TTATATTTACAGCAATTTGTGACCATG-----GGGTCA--TTT--A--A---TAAA---A---A---TG---ACTG-GCAGATCAGTTTCTG
gi|10 : ctgtctgtcacatattACACTGTGT-TAAGAGCTCTA-GTGTTCACAGAGCAAATAC--TTT-TTT-TTG-------------------TTCGGAAGCTATCACT-------------------CTGGTTTA-CAATATGTCCGCGTGTTCATCAACCGG-ATGTACTCTCACACATTTAAACGGTTCCCGG-GAAGCACTGGCTTTTCCTTTCCAAAAACAATGT--GAAAAAAATCGTCTTATTTGTAACA-C-G-----------AATTCTTCCTCTGATAAGACATG---ATTTATGACTACTAAACAATCG----GG--CG-G-----ACGAACAAAAGAGC-GA-TGAACGTAAAAGCAATGCACATCTTC-----------TC---------ACATAAAAT----ATAGGG---------------------------GG-TCACTTTTTTACAGGA-------------------------G-TCA--T---T--TTT--ATGC-TAATGTGTCG-CTAATTTCACAGCCATTGATGGCC--A-----GTGTCT--TTT--AGTGATGT-GAAGTA---A---TG---ACGG-G-TGGTCAAAt
gi|11 : CCATCCATAAAAGTCT-TGTGGGGGCCATTCCTCTAGAATAAGAATTGA-AAACAAGAAACCAATAGG-AAACATTAA-CACGAGGCAATGGGCACGAAACACAAATATCCACACACA--AGGCA--CAATCACAAGCAAACAATA---TATA-AC-T-GAGTAAAAAGACACCACACTCATTA---AATAAGCTGGCCAGA------GGGT-CAG--TTGCCAAA-------------------TTACCACC-------AGGTGCACTAAACCTAACTTCTACCGGCCTCTTAAAATTAGAAATTGCCATAC----------AGTCTCTTTTTAA--AC-------CACTATACAT-TG-GCTT-GAACTCTCACATATCCAATAC---TT-TTT-CTG-------------------TCTAGAAGCTATCACA-------------------CAGGCTTA-CAATTTTTCCGTGCCTTTAagtgtta
gi|12 : aGCATTATAATATTTTATGCCCAGCGCGAATTAAGATT--AGTTTT--GTAAATGCGGGTCAGCCTGACTTTGATCCCCATTGCCAACCGAAATTCAATGGCTTCCTTAATACTATGACTTCCACTTGTGCGGGTGTTGATTATTA--CGTAATTTATACAATCATGTAACTACCAGTTTTATATATCT-GC--GGTCTTCCAAGCTCAAGCT------T-----G----GTTCCATACCAGTGCTGA--TCT-CAGTATA-CTGTAAACGAAGGACATCTACAATATCACATGCAACTAGTTTT------------AAGAATA-TAG---TCACAGCACGA--GACAA---GATTATATATGTAATACTACAT--C----CTGTT----TGTCG------TA---TA-AGGAGT-----GTACAGCACGACTCCCa
gi|13 : atCGTTATTA---TTCATGGCAAGTGTGAATGTAATTC--AGTT----GGTCATAC------------TTTCGATCTCTAATGTCACCCACAATTCAATGTATTCCTGAATAC---------AACCTGTGGGTGGGT--ATGGTTTGTT-------ACACCGTCATTTAATAGTCAGTTCCATAT---T-AC--GG-----CCG--TCAATAC------GTAATAG----GCTC--TACCAGTA----------------------AAATG-CC-ACATGTA----ACCA----------GTTTT------------TAAAACA--AA---AA-CAAAACAATTCACAACAACAAAATATATGTAGTACT-CCC--C---ATT-TT----T-ACA------T--TGTG-TGTA-TCA---CCAATACACATTTTCCTGGAAAGCC---CAACA--AGTACTATAAGGTTAAACA-A-TAG-GAC
gi|14 : TCACATGTGCGGTAGCACTATGTAAGGTGTATTGAATTATTTTTCGTAAATTTCACCAAATAAAGCTTTAATTACGCATGACTATTCAGTAATGCTCTGTTACCATTACAGTTAAACATAG--------TAATTGGTTGATTGGCTCACTGATTGATTATTTTAAAAGTTAA-AGACTACATTTAAATT------GTACATC--CA--CATTTTAATCAAATATTTCCTGAGCGCCACATGG-AAGCTTCAATATTGACGAAGTGGAAGACTTTGGTTTTATACTGTGGTTTGCTTATAAATGTTTTCTACTTGGA---------TGTTGTTT------------ACATTTG-----------TCTTCCATCAAAGTATACCCCTTT-TGGAC------------GTTcggaaattggatccagttctacggaaa
gi|15 : gCTATCACG-------------------TATGTTTA-CACTATGTTCATGTTTTTA----CCGGTGTGCCCTTTCGTACCTGCAAACAATTCCCGGAGAACGA-AGGTACTTCAATCACAAATGCAAGCT--G--AAAAGCCGAACTATTTGTAACA-CGA-GAGTCCAACAAATTCTTTCTCTTAGAGTACATG---TTTTATAAATACTAAACAGTC-----AGATG--G-----ACGAAAAGACGGAC-GACCTAACATTAAA-CAATATATATCTTCTATG--ATGT-TC--GATAG--ACATGCATTGCGAGTAGAGGGGA-TGTT---------C----G-G-GG-GCATTTTCTAACGGGAAATTATGACAG----------G-G-G-TCA--A---T--TT------CTGAGGGTGTCG-AAATTTtttaggttaa
gi|16 : GAGAACCA-TGGCTGTTCCTTCGCAAATACAAGCT--G--AAAAGTCGTCATATTTGCAACA-CAA-GAACCTTATTAACTCTTCCTCTGATCAG--ATG---CTTTATGATTACTAGACAATG-----AGACT--G-----ACGAACAGACGGAC-GAACTAAC--AA----AGTAGACATATTCCATT--ACGTG-A--GATAG--ACATGAATTGTAAATAGTGGTCACTGTT---------GAATGG-G-GG-TCACATTTTCACAGGAAAAAAAAAATTTTCGCAGGAGG-G-A-TCACTC---T--TTT--ACGCGTAGGGTGTCG-TTATTTTTA---CAATTTGTGACCGccgtt
gi|17 : ATA-AAG---GATCACCACGA--GACAA---CATATCAGATGTAGTACTACAT--TCGTACT-T-----T-TCAGATAATTAGTGTATAATA-TTATCACCAATGCACGACTTCCTGGAA---TTCTCA--ACAAGTATCATAATGTAAAACA-AAT-ACGATTTTCGAAATTCCCGGTAT----CG-TGACGGG---AAATCGAACCCAGGTCCTCTGGATTGTGGTT-------TCATTAACCTAAACACTAAAC----CAAAATCAACAGGTCCGTTGGAAATCAAAATAAATCCAAAGTTCTTCACCAA--CGCCAGTGCAACC-AACCAT-AT
gi|18 : -AAATAAAAAA--AATA---AAACAT-AA-CCCAAGGCCCTGTGC-CAAAACAGATACATCTACACACA--AGACA--CAATCACAAGCGAACAATAATATATG-AC-CAGCGTAATAAGACACCATAAACATTATTAAGTATGCCGGTCGGA-----GGGGT-CAG--TTGTCAAACGGTAACAGGGG-----ATTTGAAACCTTGTTTAAGGTACACCATACCTCACTTTTTCC
gi|18 : TTTT-T---CCGG-ATGCCCTCTCGTACTTGCAAACggatgccctctcgtacttgcaaaccaagtcttcctttcaga
gi|19 : aaataaaaaaaataaaacataacccaaggccctgtgccaaaacagatacatctacacacaagacacaatcacaagcgaacaataatatatgaccagcgtaataagacaccataaacattattaagtatgccggtcggaggggtcagttgtcaaacggtaacaggggatttgaaaccttgtttaaggtacaccatacctcacGATCATTTCAAAAGTTCATAACCTACATTTCAATTTCAATTGT--AACAACA--CATTTTAACCAAGTATTTCCTGAA--------GGT---CTCCAATATGGACGAAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGAATTTGTCTTGTGCTTGGATGTC-TGCGTGTTGTTTCCTGTTGGTTTCACATTTGTTTAC-TTTTATTTTCAATCAACATATACGCCCTT-TAGAcaagtcttcctttcaga
gi|2 : AGGAGGACTCTGGTTATATAATGTAGTTTACTTGTATT------GTGCTTGGATGGC-TGCGTGTTGTTTCCTGTTGGTTTCACAAACGTTTACTTTT-ATTTTCCATTAAAGTATACGTCCTT-TTG-----------------GACT--------------TACGTTTTATAGGTTTTCAGGTGTTCATAAATGATATTGTCATTGTTTCAATGAAATTGTTCGCTGTATATTCGAGCATACTGTCCT-------GAGATAACTCTTGTATTACCGTTTTCTCAATGAACATCTTTTTC-TTTCATTGTACAGGTCGAAAAAGCT----------GCAC-----AGG----TGG---T--ACTATAAAAGAGCTGACCG-----CATT---------------GCG------TTGTAT-TTGTT-TTGTCGG-CTACAAAGTGCTTAGTATC--AATC-A----AAAG-AT--A--ATTTCATGAACTTTGAATAATGGTGATTTG-A-AAACAGTATAAT------ACATGGGCATTATCAGCTTTCATGACTAGTGTGAATACAGATT--AGTT----GTTAATGTGGGGCAGACAGATTGTGATCCCACTTGCCAACCGGAAGTCAATGTCTTCCTGAATCT---------CTCCCGTGAGAGCGTT-ATGATCT--T-------ACGTCGTT-TTTAATTGTCAGTATCATAT---C-CC--GG-----CGA--ACAATCT------TTTGTAG----ACTT--TACGAATGTTGA--CCTCCAGTTTA-CTATAAACGACGGACATCTAC--TACCACATGTAATTAGTTTTAAAAATAAAGTAAAAAATA-TAGTATCATCAGAACGA--GACAA---CATTATATATGTAGTACCACAT--C---CCG-TC----T-TCA------TACTGTA-AAGC-A-----CAAATGCACGACTCCCTG-----------G--A--AATAGTACAGCGT--AAC---------ATTTTTATGATTCGCGGTATA-ttaatgtttttatgtta
gi|20 : ACATCTTCTATG--GTGAGT---GAGAG--ACATGACTGGCAAATAAGGGTCATTATTAGAAATAAGTTATAA-GAGG-TAATTATTTCACAGAA---------------------G-GTG-TCA--T---T--TTTTTACGCGTAGTGTTTCG-TTATTTTTACAGCCATTTGTG-CCAT---------T----TTC--T--GACGT-GA---GATTA---TG---ACCGAG-GAGTCGATTTCT
gi|21 : a-------CTGCCAATCGCTATCTCACCA----AT---------ATAGAATCGTCGATTTAAAA------CAAAC-ATTG-AATATGCCAATATCTAA-ACAGATC-CA-GAGAAGTAAAAGACTG--CTTC--TACCGGTATCTG-CCATAACAGCCaaggaggtatataaaaattacgtaacatc
gi|21 : CTTCCTCCAAAATATAAGTTAA-ACATAaaatgagtatctgtgggatttaaacctttttaatcctactaggagaggcttcctccaaaatataagttaaacataag
gi|22 : ctgccaatcgctatctcaccaatatagaatcgtcgatttaaaacaaacattgaatatgccaatatctaaacagatccagagaagtaaaagactgcttctaccggtatctgccataacagccaaatgagtatctgtgggatttaaacctttttaatcctactaggagaggTTATAATTCCAAACTTAA--AAAAAACATCATATTTATAACA-C-GCGAGATTCACCCATT-TTCCTCTAATATGACATG---TTTTACGACTACTGGACAACCG----GG--C--GGATAAACAAACTGACGGCCTGGCCTATCTTAAAA-CAATACACCTCTTCTATA--ATGTGT---GATAG--ACACGAACTGCAAATATGCGTCATag
gi|23 : cTATGACTACTAGACAATC-----AG--CCGG-----ACCAACAGACTGAC-GACCTAACTTAAAA-TAAAAGACATTTTCCAAG--ATGTGTA--AA-AG--ACATGAATTGCGAATAGAAGTCATTATT---------TAATAG-G-GG-TCACTTTTTCACAGGA---------------------G-GCG-TCA--CTTTT--TTT--ACGCGTAAGATGTCG-T--TTTTTACAGCAAT
gi|24 : aTAATTGCCAGTATTATAT---G-ATTGGGTT---CGA--T-AGTCTGTATGATTTATAACTCAGTTCCATACCACTACTGACCTCT-CA---TAGCTGTAATCAACTGGCATCTTTAATAACACATCAAACTAGTTTT------------AAGAATATTAG---AATCAGCACGA--GATAA---
gi|25 : aTTATT---------TTATAG-G-GGGTCACTTTTTCAGAGGA---------------------G-G-GGTCA--CA--T--TCT--ACGCGAAGAGTATCG-TTATTTATACATCAATGTGGGACCG-G-----GGTTCA--T
gi|26 : TA-AC-CAGAGCAAAAACACACCACAAACATTA---AATAAGCTGGCCGGA-----GGGGT-AAA--CTGCCAAACGGCAACAGGGG-----ATTTGAAACCTTGTTTAAAGgattttgcattgaaatgtc
gi|27 : gGG---------------------G-G-G-TCA--CCT-T--TTT--ACGTGTGGAGTGTCGTTTTTTTTTACGTTAACTTGTGACCG-A-----TGATCA--TTTTCT--AACGT-GA---A---ATACTG---ATTG-G-GGc
gi|28 : CA--CACTCACAAGCAAACAGTA---TATACACTC-------AAAGATACATTAAACATTA---AATATGCTGGCCAAA-----TGG
gi|29 : gG-------------------TCAGGAAGCTTTCAAG-------------------C-GGTTTAACAGTATGTCCGTG-TTTTAT---C
gi|3 : TCACATGTGCTATAGCACTATGTGAGGTGTATTCAATTACTATTCGCAAATTTCACCAAGTATAGCTCATGTTACGCATGACTATTCAGTAATGCTCTGTTGCCCTTTACGTACAATATAGCGACTGGTTGATTTGCTAATTG--------ATTTATTATTTTAATAGTTCATTACTTACATTTTAATT------GT--ACC--TTTTCATTTTAACCAAGTATTTCCTGAGCATCGCATTGCAAGCTCCAATATAGACGAAGAGGATGACTCTGGTTATATAATGTGGTTTGCTTGTATTTGTCTTGTGCTTGGAT-TCATGTGTGTTGTTTCCTTTTGGTTTCACATTTGTTTAC-ATTTATCTTCCCTCTAAGTTTGCCCCCTTGTGGACTTACCTTTTGGTGTTGATTAAATAATTTCAGTGTACCTTTTA---ATTTTCGGATGTCCACAAATGATA----------TTCAATGAAATTGTTCGTTGTATAGTCGAGCGTAATGTCCTTGATAG--------CTCTTGTATTA-TGTATTCTCAATGCGCATTTGTTTCATTT-ATTGTACACGTGGGACAAGCTCCC-CAGCGGGTAT--TTCTGG----AGA---TTAGCCGTGAAGAAGCTGACTG-----CCTT---------------GTG------TTATATATATTT-TAATCTG----CAAAGTGCTTAGTAT--CAATC-G----AAAG-AC--A--ATGTTATGAACTTTAGATAATGATGATATGAA-GA-CA------T------ACATGGGCATTATCAGCTTTCATCACTAGCGTGAATTCAGATTCAAGTTAGTGGTTCATGCGGGGCAGTCAGGTTTTGTTCCCTATTGCCAACCGAAAGTCAATGTt
gi|30 : gtctg-G-GACTTTCAAAATCCTCAGTATA-ATCGTT-ACCGG---AAGTCGAA
gi|4 : TCAAAAGTA-AACAATCTATTG-AA-AGGCAAATATCTAAGAAAGATAACGTAAGAAGTAAAATTCCG--C--CAATACCAGTAACCGTCCATAA---------------TTTTTTTT------------TTAA-AACTATGAA-CCAACAGG-AATCATAAAATACAAGGCCCTGGACACAAAATACAGACAT-----------ATACA--CAG-CACAAGCAAACACTA---AATA-AC-CATCGTAAAAAGACACCACAAACATTA---AATAA
gi|4 : cACAAGCAAACACTAA--ATAA--CCAT---CGTAAAA---AGACA-CCACAAACATTAAATAANNNNNNNNNNACAAACACTA---AATA-AC-CATCGTAAAAAGACACCACAAACACTA---AATAAGCTGGCCGGAGCCTCGGAGT-GAA--ATG-AAAGCGGCAACAGGGGATTTAATTTGAAACCTTGTTTAAGATGCACAAAACCTCACTTTTAnnnnnnnnnnacaaacactaaataaccatcgtaaaaagacaccacaaacactaaataagctggccggagcctcggagtgaaatgaaagcggcaacaggggatttaatttgaaaccttgtttaagatgcacaaaacctcacttttagaatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttccggtgaactatcacaaatacaagctgaaagttgtcatgtttgtaacaggagagtttgaccaatactaactcttagaagacatgtttttttatgattactagaacagacggacgacatgacttaaaaaaatagacatcttctatggtatatgtgatagacatgaattgcaaacgttattttatgggggtcactttttcacaggaggaatctatatataaac
gi|4 : ctcaaaagtaaacaatctattgaaaggcaaatatctaagaaagataacgtaagaagtaaaattccgccaataccagtaaccgtccataattttttttttaaaactatgaaccaacaggaatcataaaatacaaggccctggacacaaaatacagacatatacacagcCTATCACAAATACAAGCT--G---AAAGTTGTCATGTTTGTAACAGG-A-GAGTTTGACCAATACTAACTCTTAGAAGACATGTTTTTTTATGATTACTAG---------------------------AACAGACGGAC-GACATGACTTAAAA-AAATAGACATCTTCTATGGTATATGT---GATAG--ACATGAATTGCAAA-------CGTTATT---------TTATGG-G-GG-TCACTTTTTCACAGGA---------------------G-G-gaatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttccggtgaactatcacaaatacaagctgaaagttgtcatgtttgtaacaggagagtttgaccaatactaactcttagaagacatgtttttttatgattactagaacagacggacgacatgacttaaaaaaatagacatcttctatggtatatgtgatagacatgaattgcaaacgttattttatgggggtcactttttcacaggaggaatctatatataaac
gi|5 : ctcaaaagtaaacaatctattgaaaggcaaatatctaagaaagataacgtaagaagtaaaattccgccaataccagtaaccgtccataattttttttttaaaactatgaaccaacaggaatcataaaatacaaggccctggacacaaaatacagacatatacacagcacaagcaaacactaaataaccatcgtaaaaagacaccacaaacattaaataannnnnnnnnnacaaacactaaataaccatcgtaaaaagacaccacaaacactaaataagctggccggagcctcggagtgaaatgaaagcggcaacaggggatttaatttgaaaccttgtttaagatgcacaaaacctcacttttagaatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttccggtgaaATA-AC-CAGAGTAAAAATACACCACAAACATTA---TATAAGCTGGCCGGA-----TGGGT-CAA--TTGCCAGACGGCAACAGGC------ATTTGA---------------------AACTTCAC------------CTTAAAATAAGAAATTGCCATAT----------AACCTTTTTATA----C---TGTACA----ACAAAAG-GCTC-------TCA----ACGAGCAC--TTT-TTTTCTG-------------------TCAAGAGACTGTCACG-------------------TACGTTTA------TGTCCGTGTTTT-AT---CTGG-GT-CCCTCTCGCACCTGCAAACAATTCCCGAAGAACTA-TGGCTCTTCCATCACAAATACAAGCT--G--AAAAGTCGTTATATTTGTAACA-TGA-GAGTCTAACCAAGTCTTCCTGTAAGAAGACATG---TTTTATGACTACTAGACAACCAGACGGG--C--G--------AACATACGGAC-GGTCTAACTTATAA-CAATATACATCTTCTATG--ATGTG-C--GATAG--ACACGAGTTGCGAATAGG---CGTTA-----------TTATAGTG-GG-TCACTTTTTCACAGGA---------------------G-G-G-T--------------------GTGAGGTGTCG-TTATTTTTACAGCAATTTGTGACCGTGAGCCCGGGTCATTTTT--A--AACGT-CT---A---A---TAATTACCG-G-GGGTCATATTCTGaatctatatataaac
gi|6 : GCCGGA-----AGGGTACCGCTTTGC--AACGGCAACCTTGGT----ATTTAAAACCTTGTTTAAGGAGCACTTAACCTTACTTTAACCC-CTTCTTAGTACCAGAAATTGTGATATCTTTTTCACCAACATTTTCTTAA--ACCATTGCACATTCTACTTAGT-ATTCAG-GCTCTTACAAAATGAATACCTTTT-TTT-CTG-------------------CCATGAAGCTATCACA-------------------CTGGTTTA-CAACGTGTCCGTGTTTTTAT---CCGG-GTGTCCCCTCATACCTGCAAACAATTCCTGCAGATCAA-TTGCTCTTCC-TCATAAATACAAGCT--G--AAATGTCGTCATACTTGTAAGA-CGA-AAATCTAATCAATTTATCCTCTGATAAAACATA---TTTTGTGACTA-TCGACGATC-----GGA-CG-G-----ACGAACAGACGGAC-GACCTAACTTGAAG-CAATACACTTTTTCTGTG--G--------GATAG--ACATAAATTGCAAACAGAGATCATTATT---------TTATAG-G-GG-TGACTTTTTTACAGGAG--------------------G-G-G-TCA--T---TTATTT--ACGCGAAGTGTGTCG-TTATTTTTAAAGAAATTTGTGACC--G-----GGGTGA--TTTTCA--AACGT-CAACTA---A---TG---ACTG-T-GGA-CATTTTATGacgggaaataaagatcgggggtaatatctgaggtgggagtgg
gi|7 : CAAGTGGGTAAAGCT-CCACAGCAAGTACAAT--TGG----AGA---TCAGCTATAAAGGAGCTGATTGCTTTGCATTATATTTCTGTAATCGGCGACAAAGTGATAA-GTATTCTAGTATG-CTACAAAATGCTTAGTATG--AAGC-G----AAA---TGTA--ATTTCGT-AACTTTTAATAATGGTGATTTG-ACGA-CA------TTATGATACATGGGCATTATCAGCTT-CATGTCTAACGTGAATTCAGATT--AGTT----GTTCATTCGGAACATTCAAATTTTGATCCCCATCGCCAACCAAAATCAAATATTTTCCTAAATAC---------CACCTGTGATTTTATTG-GCATTT--C-------ACGCCGTTGTTTATTA-CCAGTATCGTAT---T-AA--GT-----CGG--CCAATCT------TTCACAG----GCT-----------------TTT-CAGTTTA-CCGTAAACGACCGACATCTGC--TACAACAAACAACTAGT-----------------------TAG---GATCAACACAA--GACAA---TATAATATATGTAGTACTATAT--C---CCT-TC----T-TCA------TAGTGTA-AGGC-A-----CCGGTGGACGACTCCCAG-----------G--A--AGTACTATAGGATAAAATA-acgtgaa
gi|8 : GGTGTACCAAACCTCACTTTTACCCTCCTCTTAAAATCAAACATTGCCACAT----------AATCTCTTAAAAACCAC---TGCCCACCATATATAAG-GCTC-GAGTTCTCACATAACGAACGC--AATATTT-CTGCCAAGAAGCTATCACGCAGTCAAGAAGCTATCACGCAGTCAAGAAGCTATCACGCAGGTTTA-CAATATGTCCCTG-TTTTAT---CTAT-TTGCCCTCTCGTACCTGC-AACAATTCCCGGAGAACCA-AGGCTTTCCAATCACAAATACAAGCT------AAAGTCGTCATATTTATA---------------ACTAATTCCTCCTCTTCGAATACATG---TTTTATGACTACCTAACAAT------------------------CAGACGGAC-GAATTAACTTAAAA-CAATAGCCATCTTCTAGA--A---ATCGGGATAG--ATATGAATTGCGAATATGGGTCATTATT---------TTATAG-G-GG-TCACTTTTCC--------------------------------------------------ACGCGTAGAATTTCG-TTA---------------GTAACCG-G-----GGGTCA--T-------AAT--------A---A---TG---ACCA-T-GGATCACTTTCTtatag
gi|9 : TTTT------------AAAACTA-TAT---GATCAGCATGA--GTCAA---TATAATAAATATAGAACTACCTGGC---ACA-TCCTGTT-TTA------CA-CATATAGAG-T-----TTA--GCAC----CGCTGCAA---A----A--A--ATTCCTGGAAGGCTCAATA---T-G-TACTAT-AGGGTCCTTG-----------T-ACAGGGTTAACCCGAATCCAGAAC-------TTCTGGATATTGAGCCCATCAACATAAATACTAGACAGA----AATCTACAGATCCGT---------------------GATTTTCGTCTAATGGA--AGTGCAATCAC-CCGT-GTTAGTATTTAGTGACATAACAATTATAGTGTCTCTGTGACAAAGTGGTTAAGATTTCTCT--------------TCACTATCCTATTACTATATGGTACTAAAATAGAACCATCGATTCAAAACTATA-CGAAC-TTCGAAA-AGGTAATGATCTGACACAGAT--CG-G------------CTGATT--C--TAACAG-----G-----AGAAGCTTACG--GGAGTC--TCCTC---AACAGAAGTAAACAAATATGAAACCAACCAG-AAACTTTAA-CACctgaggatttaatgaccagggatcaatttgt
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 66666 33 222222 11 11 11 11 66666666666666666666 2 11 222 1 2222 6666666666666 1 2222 66666666666 00000000000000000000000000 11 1 2222 222222 22222 666666666666666666666 2222 33333333333 3333333333 1 1111 111 22222222222 1111 111 111111 111 222222222222 1111111111111111 444444444444444444444444444 5555555555555555 2222222 2222 11 66666 444444 222222 6666666666666666666666666666 11111 111 1 55555555 33333333333333 111 11 1 1 11111111 1111 11 111 11 11 111 111111 222222 1 3333333333 111 1111 333 111 4444444444444444444 3333333333333333333 55555555555555 22222222222 11111111111 555555555555555555555555555555555555555 555555555555555555555555555555555555555555555
lowQualScore : 1 66666 6 3 0 11 8 3 1 888888 33 1 66 333 4 4 00 0 0 99999 0 66 5 8 8 3 22222222222222222222 33 0 44 333 0 7 3 8888 0 1 8888888888888 7 2 3 3333 6 0 2 777 88 33333333333 1 2 6 3 33333333333333333333333333 1 11 0 1 33 8888 555555 7 55555 2 1 000000000000000000000 5 1 99 3333 22 3 1 11 33333333333 1 1 55 5 3333333333 1 1 1 8888 4444 111 33333333333 4444 999 2 1 333333 6 777 6 1 3 555 44 1 999999999999 55 9999 0 66 888 0 6666666666666666 5 333333333333333333333333333 88 1 6666666666666666 1 7 6666666 3 1111 2 1 33 0 33333 1 444444 777777 0000000000000000000000000000 1 99999 333 0 3 1 1 1 22 1 00000000 3 0 88888888888888 0 3 2 111 44 0 0 1 1 8 55555555 3 0 33 0 444 5 666 9999 11 222 4 1 6 1 0 3 6 00 1 6 1 3 3 44 11 3 99 0 1 111 5 5 555 888 777777 5 77 0 000000 1 1 0 3 1 0 1 5555555555 1 111 4444 3 1 3 3 1 6 666 3 1 222 6 6 4444444444444444444 8888888888888888888 3 5 5 888 5 5 3 99999 44 0 4 1 1 777 44444444444444 4 1 0 4 1 22222222222 55 1 11 55555555555 7 3 3 555555555555555555555555555555555555555 55 1 3 555555555555555555555555555555555555555555555 0 888 1
lowQualScore : . ..... . . . .. . . . ...... .. . .. ... . . .. . . ..... . .. . . . . .................... .. . .. ... . . . .... . . ............. . . . .... . . . ... .. ........... . . . . .......................... . .. . . .. .... ...... . ..... . . ..................... . . .. .... .. . . .. ........... . . .. . .......... . . . .... .... ... ........... .... ... . . ...... . ... . . . ... .. . ............ .. .... . .. ... . ................ . ........................... .. . ................ . . ....... . .... . . .. . ..... . ...... ...... ............................ . ..... ... . . . . . .. . ........ . . .............. . . . ... .. . . . . . ........ . . .. . ... . ... .... .. ... . . . . . . . .. . . . . . .. .. . .. . . ... . . ... ... ...... . .. . ...... . . . . . . . .......... . ... .... . . . . . . ... . . ... . . ................... ................... . . . ... . . . ..... .. . . . . ... .............. . . . . . ........... .. . .. ........... . . . ....................................... .. . . ............................................. . ... .
lowQualScore : 0 77777 7 7 7 00 8 2 2 888888 88 2 22 000 2 2 22 2 8 44444 8 44 6 0 0 2 44444444444444444444 88 0 00 333 7 3 3 3333 7 0 3333333333333 3 0 7 3333 7 2 5 555 88 22222222222 0 0 5 5 88888888888888888888888888 0 00 0 0 22 0000 222222 0 00000 5 2 222222222222222222222 2 0 22 3333 00 7 0 44 00000000000 0 4 88 0 2222222222 4 0 0 8888 2222 777 00000000000 2222 333 5 0 333333 7 555 7 7 7 333 77 0 333333333333 44 0000 4 99 888 3 0000000000000000 7 666666666666666666666666666 77 7 3333333333333333 7 8 2222222 2 1111 5 0 88 8 33333 0 333333 000000 0000000000000000000000000000 0 33333 777 7 3 0 0 0 00 0 00000000 7 7 00000000000000 7 2 5 000 22 0 0 0 2 8 00000000 0 2 55 8 888 6 444 8888 22 444 0 4 7 0 8 7 7 22 0 7 0 8 2 00 00 2 22 7 5 777 0 0 666 888 000000 7 99 7 777777 4 4 7 0 7 4 0 0000000000 4 888 8888 2 0 7 5 0 7 000 3 0 777 7 7 3333333333333333333 8888888888888888888 6 0 1 888 7 7 6 66666 66 9 1 0 0 888 11111111111111 0 6 9 0 0 11111111111 00 0 11 00000000000 3 6 6 999999999999999999999999999999999999999 00 2 6 222222222222222222222222222222222222222222222 4 666 0
consensus : NNNNNNNNNNNNNNNNTCACATGTGCGGTAGCACTATGTGAGGTGTATTCAATTACTATTCGTAAATTTCACCAAGTATAGCTCATATTACGCATGACTATTCAGTAATGCTCTGTTGCCCTTTAAGTANAATATAGCGACTGGTTGATTTGCTNATCG-ATTGATTATTTTAAAAGTTCATAACCTACATTTTAATT------GT--ATCANCACATTTTAACCAAGTATTTCCTGAGCGCCGCACGGTAAGCTCCAATATGGACGAAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGTATTTGTCTTGTGCTTGGATGTC-TGCGTGTTGTTTCCTGTTGGTTTCACATTTGTTTACTTTTTATCTTCCATCAAAGTATAC-CCCCTT-TGGAC------------GTTGATTAAATGATTTCA-CGTA-CTTTTA---ATTTTCGGGTGTCCACAAATGATATTGT-ATT----CAATGAAATTGTTCGTTGTATAGTCGAGCGTANTGTCCC-----G------CTCTTGTATTACCGTATTCTCAATGCGCATCT-TTTCATTTCATTGTACAGGTGGGAAAAGCTCCACGGCGNGTAC-A-TC------TGGAGATCAGCTATAAAGGAGCTGACCGCNTTGC--------------------------GTTATATAT-NTT-TAGTNTGCTACAAAGTGCTTAGTA-TGCAATC-G----AAAGATA-----ATTTCATGAACTTTAAATAATGGTGATTTG-A-GA-CA------T------ACATGGGCATTATCAGCTTTCATGNCTAGCGTGAATTCAGATT--AGTT----GTTCATGCGGGGCAGCCAGATTTTGATCCCCATTGCCAACCGNAATTCAATGTCTTCCTGAATAC---------CACCTGTGAGTGCGTTGATGATT-------T--TACGCCGTCGTTTAATTGCCAGTATCATATN-ACGGCGGTC----AAT---CT------TTCG-TAG----GCTC--TACCAGTGCTGA--TCT-CAGTTTA-CTGTAAACGACCGACATCTACAATACCACATGCAACTAGTTTT------------AAAAATA-TAG---GATCAGCACGA--GACAA---CATAATATATGTAGTACTACAT--C---ACT-TC----T-TCA------TA-TGTA-AGGA---T-----CCAATGCACGACTCCCTG-GA-----NA--A--AGTACTATAGGGTAAAACA-A-T-G-GACTTTCAAAATTCTCGGTATA-ATCGTGACNGG--AAATCGAACCCAGG-CCTCTGGATTNTGG-ATTCCATTAACATAAATACTAGA-CA-AAATCTACAGATCCG-T-GGAAGTCAAA--A--AAT-CCAGA-TTTTNCTCCAA--GACCAGTGCAATCAAACCGT-ATNAGTATTTAGTGGCATAACAGTTANAGNGCCTCTGTGACGGAGTGGTNNAGATNTCTCT-------CTGCCAGTCGCTATCTCATCGCTATATGGT----AAATAGAATCGTCGATTCAAAACTA-A-CAAAC-GTTG-AA-AGGCAAANATCTAACACAGATC-CG-TGAGAAGTAAAATTCTGCCAGTACCGGTANCCGTCCATAGNAGCCT-CGTGGAGTCC-TTCCTCCAAAATAAAAGTTAA-AAATANGAAACCAACAGG-AAACAT-TAACACA-AGGCCCTGGGCACAAAACACAGACATCCACACACA--AGACA--CAATCACAAGCAAACAATA---TATA-AC-CAGAGTAAAAAGACACCACAAACATTA---AATAAGCTGGCCGGA-----GGGGT-CAG--TTGCCAAACGGCAACAGGGG-----ATTTGAAACCTTGTTTAAGGTGCACCAAACCTCACTTTTACCCTCCTCTTAAAATCAGAAATTGCCATAT----------AATCTCTTTATAA--AC---TGCACACTGTACATANG-GCTC-G-GCTCTCACATANCGAACAC--TTT-TTT-CTG-------------------TCAAGAAGCTATCACG-------------------CAGGTTTA-CAATATGTCCGTGTTTTTAT---CCGG-GTGCCCTCTCGTACCTGCAAACAATTCCCGGAGAACCA-TGGCTCTTCCATCACAAATACAAGCT--G--AAAAGTCGTCATATTTGTAACACGAGAGTCTNACCAATTCTTCCTCTNANAAGACATG---TTTTATGACTACTAGACAATC-GG--C--G-----ACGAACAGACGGAC-GACCTAACTTAAAA-CAATANACATCTTCTATG--ATGTGTC--GATAG--ACATGAATTGCGAATAGGGGTCATTATT---------TTATAG-G-GG-TCACTTTTTCACAGGA---------------------G-G-G-TCA--C---T--TTT--ACGCGTAGGGTGTCG-TTATTTTTACAGCAATTTGTGACCGTG-----GGGTCA--TTT--A--AACG--T-GA---A---A---TGACCG-G-GGGTCANTTTCTG
Reference ( family-816 ) : NNNNNNNNNNNNNNNNTCACATGTGCGGTAGCACTATGTGAGGTGTATTCAATTACTATTCGTAAATTTCACCAAGTATAGCTCATATTACGCATGACTATTCAGTAATGCTCTGTTGCCCTTTAAGTANAATATAGCGA-----TGATTTGCTGATCGTATTGATTATTTTAAAAGTTCATAACCTACATTTTAATT------GT--ATCAGCACATTTTAACCAAGTATTTCCTGAGCGCCGCACGGTAAGCTCCAATATGGACGAAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGTATTTGTCTTGTGCTTGGATGTC-TGCGTGTTGTTTCCTGTTGGTTTCACATTTGTTTACTTTTTATCTTCCATCAAAGTATAC-CCCCTT-TGGAC------------GTTGATTAAATGATTTCA-CGTACCTTTTA---ATTTTCGGGTGTCCACAAATGATATTGT-ATT----CAATGAAATTGTTCGTTGTATAGTCGAGCGTANTGTCCT-----G------CTCTTGTATTACCGTATTCTCAATGCGCATCT-TTTCATTTCATTGTACAGGTGGGAAAAGCTCCACGGCGNGTAC-A-T-------TGGNGGTCAGCTATAAAGGAGCTGACCGCATTGC--------------------------GTTATATNT-NTT-TAGTNTGCTACAAAGTGCTTAGTA-TNCAATC-G----AAAGATA-----ATTTCATGAACTTTAAATAATGGTGATTTG-A-GA-CA------T------ACATGGGCATTATCAGCTTTCATGNCTAGCGTGAATTCAGATT--AGTT----GTTCATGCGGGGCAGCCAGATTTTGATCCCCATTGCCAACCGNAATTCAATGTCTTCCTGAATAC---------CACCTGTGAGTGCGTTGATGATT-------T--TACGCCGTCGTTTAATNGCCAGTATCATATT-ACGGCGGTC----AAT---CT------TTCG-TAG----GCTC--TACCAGTGCTGA--TCT-CAGTTTA-CTGTAAACGACCGACATCTACAATACCACATGCAACTAGTTTT------------AAAAATA-TAG---GATCAGCACGA--GACAA---CATAATATATGTAGTACTACAT--C---ACT-TC----T-TCA------TA-TGTA-AGGA---T-----CCAATGCACGACTCCCTG-AA-----CA--A--AGTACTATAGGGTAAAACA-A-T-G-GACTTTCAAAATTCTCGGTATA-ATCGTGACNGG--AAATCGAACCCAGG----CTGGATTNTGGTATTCCATTAACATAAATACTAGA-CA-AAATCTACAGATCCG-T-GGAAGTCAAA--A--AAT-CCAGA-TTTTNCTCCAA--GACCAGTGCAATCAAACCGT-ATNAGTATTTAGTGGCATAACAGTTANAGNGCCTCTGTGACGGAGTGGTNNAGATNTCTCT-------CTGCCAGTCGCTATCTCATCGCTATATGGT----AAATAGAATCGTCGATTCAAAACTA-A-CAAAC-GTTG-AA-AGGCAAANATCTAACACAGATC-CG-TGAGAAGTAAAATTCTGCCAGTACCAGTANCCGTCCATAANAGCCT-CGTGGAGTCC-TTCCTCCAAAATAAAAGTTAA-AAATANGAAACCAACAGG-AAACAT-TAACACA-AGGCCCTGGGCACAAAACACAGACATCCACACACA--AGACA--CAATCACAAGCAAACAATA---TATA-AC-CAGAGTAAAAAGACACCACAAACATTA---AATAAGCTGGCCGGA-----GGGGT-CAG--TTGCCAAACGGCAACAGGGG-----ATTTGAAACCTTGTTTAAGGTGCACCAAACCTCACTTTTACCCTCCTCTTAAAATCAGAAATTGCCATAT----------AATCTCTTTATAA--AC---TGCACACTGTACATANG-GCTC-G-GCTCTCACATANCGAACAC--TTT-TTT-CTG-------------------TCAAGAAGCTATCACG-------------------CAGGTTTA-CAATATGTCCGTGTTTTTAT---CCGG-GTGCCCTCTCGTACCTGCAAACAATTCCCGGAGAACCA-TGGCTCTTCCATCACAAATACAAGCT--G--AAAAGTCGTCATATTTGTAACACGAGAGTCTNACCAATTCTTCCTCTNANAAGACATG---TTTTATGACTACTAGACAATC-GG--C--G-----ACGAACAGACGGAC-GACCTAACTTAAAA-CAATANACATCTTCTATG--ATGTGTC--GATAG--ACATGAATTGCGAATAGGGGTCATTATT---------TTATAG-G-GG-TCACTTTTTCACAGGA---------------------G-G-G-TCA--C---T--TTT--ACGCGTAGGGTGTCG-TTATTTTTACAGCAATTTGTGACCGTG-----GGGTCA--TTT--A--AACG--T-GA---A---A---TGACCG-G-GGGTCANTTTCTG
gi|1 : TCACATGTGTGGTAGCATTATGTGAGGTGTATTCAACTACTATTTGTAAATTTCACCAAGTATAGCTCATATTACACATGAGTATTCAGTAAAGCTCTGTTGCCCTTTAAGTAGAATATAGCGA-----T---TTGCTGATCGT-TTGATTATTTTAAAAGTT-ATAACCTATATCTTAATT------GT--ATCAGCACAGTTTAACTAGGTATTTCATGAACGCCACACGATAAGCTTCAATATGGACACAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGTATTTGTCTTGTGCTTGGATGTC-TGCATGTTGTTTCCTGTTGGTTTCACATTTGTTTACTTTTTATCTTCCATCAAAGTATGC-CCCCTT-T-GAC------------GTTAATTAAATGATTTCACCGTAACTTTTA---ATTTTCAAGTGTCCACAAATGATATTGT-ATT----CAATGAAAATGTTTGTTGTATAGTCAAGTATTTTGTCCC-----G-------TC-TGTATCATCATAATCTCAATGTGCA-------CATTTCATTGTACAGGTGGGAAAAGCTCCATGGCATATACTA-TTGGAGAATGGAGATCAGCTATAGAGGAGCTGACCACATTGT--------------------------GTTATATAT-TTT-TAATGTACCATAAAGTGCTTAGTATTGTAGTCTGCTACAAAG-TATTAGTATTTTATGAACGTTAATTAATCATGATTTG-A-----A------T------ACATAGGCATAATCAACTTTCATGAATGACATGAATTCAGATT--AGTT----GTTCATGCGGTGCAGCCAGATTTTGATTGCCATTGCCAATAGTAATTCAATGTCTTTCTGAA------------------TGAGTGCATTGAGGATT-------A--TATATCATTTTATAATAATTAGTATCATATTAAGGGCGGTC----AAT---CT------TTTG-TAG----GCTC--TACGAGTGTTGA--TCT-CAATTTA-CTGAAAACAGCTGACATCTACAATACAACGTGTAAATAGTTTT------------AAAAATA-TAG---GATCAGCACAA--GACAA---CATAATACTTGTAGTATTACAT--C---ACT-TC----T-TCA------TACTGTA-AAGA---T-----TCAAAGCACAACTCCCT---------TA--A--AGTGCTATGGGGTAAAACAGA-T-G-GACTTTCAAAATTCTCTGTATACATCGTGACTGG--AAATTGAACCCAGG-----TGAATTATGG-ATT-CATTAACACAAATATCA----A-AAATCTACAGATCTG-TAGGAAGTCAAA--AGTAATCCCAGA-TTTTACTCCAA--GACCAGTGCAATGAAACCATAAAAAGTATTTAGTGGTATAACAGTTAGAGGGCCTCTGTGACGGAGTAGTATAGATATCTCTCTGTCAGCTGCCAGTCACTGTCTCATCGTTATAAGAT----AAATAGAATCATCAACTCAGAACTA-A-CAAAC-GTTG-AA-AGGCAAAGATCTTACACAGATC-CG-TAAAAAGTCAAATTCTGTTAGTACCAATAGCCGTCTATAGTAGCCT-TGTGGAGTCC-TTCCTCCAAAATAAAAATTAA-AAATACGAAACCAACAGG-AATCAT-TAACACC-AAGCCCTGGGCATAAAACACAGACATTCGCACACA--AGACA--CAATTACAAGCAAACAACA---TATA-AT-CAGAGTAAAAAGAAACCACAAACATTA---AATTAGCTGGTCAGA-----GGGGT-CAG--TTGCCAAATGGCATCAGGGG-----ATTTGAAACCTTTTTTAAGGT-TACCAAACCCCACTTTTACTCTCCACTTAAAATCAGAAATTGCCATAG----------AATGTCTTTATAA--AC---TGGACACTGTACATATG-GCTC---GCTCTCACATATCAAACAC--TTT-TTG-CTT-------------------TAAAGAAGTTATCGCA-------------------CAGG-TCA-CAATATGTATGTGTTTTTAT---CAGG-GTGCCCTCTCTTACCTGCAAATAATTCCCAGAGAACCA-TGACTCTTCCATCAAAAATACAAGCT--G--AAAAGTCATCATATTTGTAACAT--GAGTCTTACCAATTCTTCCTCTTACAAGACATG---TTTTATAACTGTCAGACAATC-AG---------------ACAGACGGAC-GACTTAA-TTAAAA-CAATATACATTTTCTCTG--ATGTGTT--AATAGAAACATGAATTGCAAATAGGGGTCATTATT---------TCATAGTG-GG-TCATTTTTTCACAGCA---------------------GCG-T-TTA--C---T--TTT--ACTTATAGGGTGTCA-TTATATTTACAGCAATTTGTGACCATG-----GGGTCA--TTT--A--A-----TAAA---A---A---TGACTG-GCAGATCAGTTTCTG
gi|10 : ctgtctgtcacatattACACTGTGT-TAAGAGCTCTA-GTGTTCACAGAGCAAATAC--TTT-TTT-TTG-------------------TTCGGAAGCTATCACT-------------------CTGGTTTA-CAATATGTCCGCGTGTTCATCAACCGG-ATGTACTCTCACACATTTAAACGGTTCCCGG-GAAGCACTGGCTTTTCCTTTCCAAAAACAATGT--GAAAAAAATCGTCTTATTTGTAACACG-----------AATTCTTCCTCTGATAAGACATG---ATTTATGACTACTAAACAATCGGG--CG-G-----ACGAACAAAAGAGC-GA-TGAACGTAAAAGCAATGCACATCTTC-----------TC---------ACATAAAAT----ATAGGG---------------------------GG-TCACTTTTTTACAGGA-------------------------G-TCA--T---T--TTT--ATGC-TAATGTGTCG-CTAATTTCACAGCCATTGATGGCC--A-----GTGTCT--TTT--AGTGATG--T-GAAGTA---A---TGACGG-G-TGGTCAt
gi|11 : CCATCCATAAAAGTCT-TGTGGGGGCCATTCCTCTAGAATAAGAATTGA-AAACAAGAAACCAATAGG-AAACAT-TAACACG-AGGCAATGGGCACGAAACACAAATATCCACACACA--AGGCA--CAATCACAAGCAAACAATA---TATA-AC-T-GAGTAAAAAGACACCACACTCATTA---AATAAGCTGGCCAGA------GGGT-CAG--TTGCCAAA-------------------TTACCACC-------AGGTGCACTAAACCTAACTTCTACCGGCCTCTTAAAATTAGAAATTGCCATAC----------AGTCTCTTTTTAA--AC-------CACTATACAT-TG-GCTT-GAACTCTCACATATCCAATAC---TT-TTT-CTG-------------------TCTAGAAGCTATCACA-------------------CAGGCTTA-CAATTTTTCCGTGCCTTTAaatagtgtta
gi|12 : aGCATTATAATATTTTATGCCCAGCGCGAATTAAGATT--AGTTTT--GTAAATGCGGGTCAGCCTGACTTTGATCCCCATTGCCAACCGAAATTCAATGGCTTCCTTAATACTATGACTTCCACTTGTGCGGGTGTTGATTATTACGTAATT--TATACAATCATGTAACTACCAGTTTTATATA-TCTGCGGTCTTCCAAG---CT------CAAGCTTG----GTTCCATACCAGTGCTGA--TCT-CAGTATA-CTGTAAACGAAGGACATCTACAATATCACATGCAACTAGTTTT------------AAGAATA-TAG---TCACAGCACGA--GACAA---GATTATATATGTAATACTACAT--C----CTGTT----TGTCG------TA---TA-AGGAGTGT-----ACA--GCACGACTCCCa
gi|13 : atCGTTATTA---TTCATGGCAAGTGTGAATGTAATTC--AGTT----GGTCATAC------------TTTCGATCTCTAATGTCACCCACAATTCAATGTATTCCTGAATAC---------AACCTGTGGGTGGGT--ATGGTT-------TGTTACACCGTCATTTAATAGTCAGTTCCATATT-ACGGCCGTC----AAT---AC------GTAA-TAG----GCTC--TACCAGTA----------------------AAATG-CC-ACATGTA----ACCA----------GTTTT------------TAAAACA--AA---AA-CAAAACAATTCACAACAACAAAATATATGTAGTACT-CCC--C---ATT-TT----T-ACA------T--TGTG-TGTA---TCA---CCAATACACATTTTCCTG-GAAAGCCCAACA--AGTACTATAAGGTTAAACA-A-TAG-GAC
gi|14 : TCACATGTGCGGTAGCACTATGTAAGGTGTATTGAATTATTTTTCGTAAATTTCACCAAATAAAGCTTTAATTACGCATGACTATTCAGTAATGCTCTGTTACCATTACAGTTAAACATAGTAATTGGTTGATTGGCTCACTG-ATTGATTATTTTAAAAGTTAA-AGACTACATTTAAATT------GTACATC--CACATTTTAATCAAATATTTCCTGAGCGCCACATGG-AAGCTTCAATATTGACGAAGTGGAAGACTTTGGTTTTATACTGTGGTTTGCTTATAAATGTTTTCTACTTGGA---------TGTTGTTT------------ACATTTG-----------TCTTCCATCAAAGTATAC-CCCTTT-TGGAC------------GTTcggaaattggatccagttctacggaaa
gi|15 : gCTATCACG-------------------TATGTTTA-CACTATGTTCATGTTTTTA----CCGGTGTGCCCTTTCGTACCTGCAAACAATTCCCGGAGAACGA-AGGTACTTCAATCACAAATGCAAGCT--G--AAAAGCCGAACTATTTGTAACACGAGAGTCCAACAAATTCTTTCTCTTAGAGTACATG---TTTTATAAATACTAAACAGTC-AGATG--G-----ACGAAAAGACGGAC-GACCTAACATTAAA-CAATATATATCTTCTATG--ATGT-TC--GATAG--ACATGCATTGCGAGTAGAGGGGA-TGTT---------C----G-G-GG-GCATTTTCTAACGGGAAATTATGACAG----------G-G-G-TCA--A---T--TT------CTGAGGGTGTCG-AAATTTtttaggttaa
gi|16 : GAGAACCA-TGGCTGTTCCTTCGCAAATACAAGCT--G--AAAAGTCGTCATATTTGCAACACAAGAACCTTATTAACTCTTCCTCTGATCAG--ATG---CTTTATGATTACTAGACAATG-AGACT--G-----ACGAACAGACGGAC-GAACTAAC--AA----AGTAGACATATTCCATT--ACGTG-A--GATAG--ACATGAATTGTAAATAGTGGTCACTGTT---------GAATGG-G-GG-TCACATTTTCACAGGAAAAAAAAAATTTTCGCAGGAGG-G-A-TCACTC---T--TTT--ACGCGTAGGGTGTCG-TTATTTTTA---CAATTTGTGACCGccgtt
gi|17 : ATA-AAG---GATCACCACGA--GACAA---CATATCAGATGTAGTACTACAT--TCGTACT-T-----T-TCAGATAATTAGTGTATAATA---TTATCACCAATGCACGACTTCCTG-GAATTCTCA--ACAAGTATCATAATGTAAAACA-AAT-ACGATTTTCGAAATTCCCGGTAT----CGTGACGGG--AAATCGAACCCAGGTCCTCTGGATTGTGG--TTTCATTAACCTAAACACTAAACCA-AAATCAACAGGTCCGTT-GGAAATCAAAATA--AAT-CCAAAGTTCTTCACCAA--CGCCAGTGCAACC-AACCAT-AT
gi|18 : -AAATAAAAAA--AATA---AAACAT--AACCCA-AGGCCCTGTGC-CAAAACAGATACATCTACACACA--AGACA--CAATCACAAGCGAACAATAATATATG-AC-CAGCGTAATAAGACACCATAAACATTATTAAGTATGCCGGTCGGA-----GGGGT-CAG--TTGTCAAACGGTAACAGGGG-----ATTTGAAACCTTGTTTAAGGTACACCATACCTCACTTTTTCC
gi|18 : TTTT-T---CCGG-ATGCCCTCTCGTACTTGCAAACggatgccctctcgtacttgcaaaccaagtcttcctttcaga
gi|19 : aaataaaaaaaataaaacataacccaaggccctgtgccaaaacagatacatctacacacaagacacaatcacaagcgaacaataatatatgaccagcgtaataagacaccataaacattattaagtatgccggtcggaggggtcagttgtcaaacggtaacaggggatttgaaaccttgtttaaggtacaccatacctcacGATCATTTCAAAAGTTCATAACCTACATTTCAATTTCAATTGT--AACAACACATTTTAACCAAGTATTTCCTGAA--------GGT---CTCCAATATGGACGAAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGAATTTGTCTTGTGCTTGGATGTC-TGCGTGTTGTTTCCTGTTGGTTTCACATTTGTTTAC-TTTTATTTTCAATCAACATATAC-GCCCTT-TAGA--------------TT-----AATGTTTTTA-TGTcaagtcttcctttcaga
gi|2 : AGGAGGACTCTGGTTATATAATGTAGTTTACTTGTATT------GTGCTTGGATGGC-TGCGTGTTGTTTCCTGTTGGTTTCACAAACGTTTACTTTT-ATTTTCCATTAAAGTATACGTCCTTT-TGGAC---------------------------TTA-CGT----TTTATAGGTTTTCAGGTGTTCATAAATGATATTGTCATTGTTTCAATGAAATTGTTCGCTGTATATTCGAGCATACTGTCCT-----GAGATAACTCTTGTATTACCGTTTTCTCAATGAACATCT-TTTTCTTTCATTGTACAGGTCGAAAAAGCT---------GCAC-A----------GGTGGT--ACTATAAAAGAGCTGACCGCATTGC--------------------------GTTGTATTT-GTT-TTGTCGGCTACAAAGTGCTTAGTA-T-CAATC-A----AAAGATA-----ATTTCATGAACTTTGAATAATGGTGATTTG-A-AAACAGTATAAT------ACATGGGCATTATCAGCTTTCATGACTAGTGTGAATACAGATT--AGTT----GTTAATGTGGGGCAGACAGATTGTGATCCCACTTGCCAACCGGAAGTCAATGTCTTCCTGAATCT---------CTCCCGTGAGAGCGTT-ATGATC-------T--TACGTCGTT-TTTAATTGTCAGTATCATATC-CCGGCGAAC----AAT---CT------TTTG-TAG----ACTT--TACGAATGTTGA--CCTCCAGTTTA-CTATAAACGACGGACATCTAC--TACCACATGTAATTAGTTTTAAAAATAAAGTAAAAAATA-TAGTATCATCAGAACGA--GACAA---CATTATATATGTAGTACCACAT--C---CCG-TC----T-TCA------TACTGTA-AAGC---A-----CAAATGCACGACTCCCTG-GA-----AA--T--AGTAC---AGCGT--AAC---------ATTTTTATGATTCGCGGTATA-ta
gi|20 : ACATCTTCTATG--GTGAGT---GAGAG--ACATGACTGGCAAATAAGGGTCATTATTAGAAATAAGTTATAA-GAGG-TAATTATTTCACAGAA---------------------G-GTG-TCA--T---T--TTTTTACGCGTAGTGTTTCG-TTATTTTTACAGCCATTTGTG-CCAT---------T----TTC--T--GACG--T-GA---GATTA---TGACCGAG-GAGTCGATTTCT
gi|21 : a-------CTGCCAATCGCTATCTCACCA----AT---------ATAGAATCGTCGATTTAA----A-A-CAAAC-ATTG-AATATGCCAATATCTAA-ACAGATC-CA--GAGAAGTAAAAGACTGCTTCTACCGGTATCTG-CCATAACAGCCaaggaggtatataaaaattacgtaacatc
gi|21 : C-TTCCTCCAAAATATAAGTTAA-ACATAAGaaatgagtatctgtgggatttaaacctttttaatcctactaggagaggcttcctccaaaatataagttaaacataag
gi|22 : ctgccaatcgctatctcaccaatatagaatcgtcgatttaaaacaaacattgaatatgccaatatctaaacagatccagagaagtaaaagactgcttctaccggtatctgccataacagccaaatgagtatctgtgggatttaaacctttttaatcctactaggagaggTTATAATTCCAAACTTAA--AAAAAACATCATATTTATAACACGCGAGATTCACCCATT-TTCCTCTAATATGACATG---TTTTACGACTACTGGACAACCGGG--C--GGATAAACAAACTGACGGCCTGGCCTATCTTAAAA-CAATACACCTCTTCTATA--ATGTGT---GATAG--ACACGAACTGCAAATATGCGTCAT
gi|23 : cTATGACTACTAGACAATC-AG--CCGG-----ACCAACAGACTGAC-GACCTAACTTAAAA-TAAAAGACATTTTCCAAG--ATGTGTA--AA-AG--ACATGAATTGCGAATAGAAGTCATTATT---------TAATAG-G-GG-TCACTTTTTCACAGGA---------------------G-GCG-TCA--CTTTT--TTT--ACGCGTAAGATGTCG-T--TTTTTACAGCAAT
gi|24 : aTAATTGCCAGTATTATATG-ATTGGGTTC----GATAGTCTGTATGATTTA-TAACTCAGTTCCATACCACTACTGACCTCT-CA---TAGCTGTAATCAACTGGCATCTTTAATAACACATCAAACTAGTTTT------------AAGAATATTAG---AATCAGCACGA--GATAA---
gi|25 : aTTATT---------TTATAG-G-GGGTCACTTTTTCAGAGGA---------------------G-G-GGTCA--CA--T--TCT--ACGCGAAGAGTATCG-TTATTTATACATCAATGTGGGACCG-G-----GGTTCA--T
gi|26 : TA-AC-CAGAGCAAAAACACACCACAAACATTA---AATAAGCTGGCCGGA-----GGGGT-AAA--CTGCCAAACGGCAACAGGGG-----ATTTGAAACCTTGTTTAAAGgattttgcattgaaatgtc
gi|27 : gGG---------------------G-G-G-TCA--CCT-T--TTT--ACGTGTGGAGTGTCGTTTTTTTTTACGTTAACTTGTGACCG-A-----TGATCA--TTTTCT--AACG--T-GA---A---ATACTGATTG-G-GGc
gi|28 : CA--CACTCACAAGCAAACAGTA---TATACACTC-------AAAGATACATTAAACATTA---AATATGCTGGCCAAA-----TGG
gi|29 : gG-------------------TCAGGAAGCTTTCAAG-------------------C-GGTTTAACAGTATGTCCGTG-TTTTAT---C
gi|3 : TCACATGTGCTATAGCACTATGTGAGGTGTATTCAATTACTATTCGCAAATTTCACCAAGTATAGCTCATGTTACGCATGACTATTCAGTAATGCTCTGTTGCCCTTTACGTACAATATAGCGACTGGTTGATTTGCTAATTG-ATTTATTATTTTAATAGTTCATTACTTACATTTTAATT------GT--ACCTTTTCATTTTAACCAAGTATTTCCTGAGCATCGCATTGCAAGCTCCAATATAGACGAAGAGGATGACTCTGGTTATATAATGTGGTTTGCTTGTATTTGTCTTGTGCTTGGAT-TCATGTGTGTTGTTTCCTTTTGGTTTCACATTTGTTTAC-ATTTATCTTCCCTCTAAGTTTGC-CCCCTTGTGGACTTACCTTTTGGTGTTGATTAAATAATTTCAGTGTACCTTTTA---ATTTTCGGATGTCCACAAATGA-----T-ATT----CAATGAAATTGTTCGTTGTATAGTCGAGCGTAATGTCCTTGATAG------CTCTTGTATTA-TGTATTCTCAATGCGCATTTGTTTCATTT-ATTGTACACGTGGGACAAGCTCCCCAGCGGGTAT-T-TC------TGGAGATTAGCCGTGAAGAAGCTGACTGCCTTGT--------------------------GTTATATATATTT-TAATCTG---CAAAGTGCTTAGTA-T-CAATC-G----AAAGACA-----ATGTTATGAACTTTAGATAATGATGATATGAA-GA-CA------T------ACATGGGCATTATCAGCTTTCATCACTAGCGTGAATTCAGATTCAAGTTAGTGGTTCATGCGGGGCAGTCAGGTTTTGTTCCCTATTGCCAACCGAAAGTCAATGTt
gi|30 : gtctg-G-GACTTTCAAAATCCTCAGTATA-ATCGTTACCGG--AAGTCGAA
gi|4 : TCAAAAGTA-AACAATCTATTG-AA-AGGCAAATATCTAAGAAAGATAACG-TAAGAAGTAAAATTCCGCCAATACCAGTAACCGTCCAT--------------AATTT-TTTTT------------TTAA-AACTATGAA-CCAACAGG-AATCATAAAATACA-AGGCCCTGGACACAAAATACAGACAT--ATACACA--G----------CACAAGCAAACACTA---AATA-AC-CATCGTAAAAAGACACCACAAACATTA---AATAA
gi|4 : cACAAGCAAACAC-TAA-ATA-A--CCAT---CGTAAAA---AGACA-CCACAAACATTAAATAANNNNNNNNNNACAAACACTA---AATA-AC-CATCGTAAAAAGACACCACAAACACTA---AATAAGCTGGCCGGAGCCTCGGAGT-GAA--ATG-AAAGCGGCAACAGGGGATTTAATTTGAAACCTTGTTTAAGATGCACAAAACCTCACTTTTAnnnnnnnnnnacaaacactaaataaccatcgtaaaaagacaccacaaacactaaataagctggccggagcctcggagtgaaatgaaagcggcaacaggggatttaatttgaaaccttgtttaagatgcacaaaacctcacttttagaatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttccggtgaactatcacaaatacaagctgaaagttgtcatgtttgtaacaggagagtttgaccaatactaactcttagaagacatgtttttttatgattactagaacagacggacgacatgacttaaaaaaatagacatcttctatggtatatgtgatagacatgaattgcaaacgttattttatgggggtcactttttcacaggaggaatctatatataaac
gi|4 : ctcaaaagtaaacaatctattgaaaggcaaatatctaagaaagataacgtaagaagtaaaattccgccaataccagtaaccgtccataattttttttttaaaactatgaaccaacaggaatcataaaatacaaggccctggacacaaaatacagacatatacacagcCTATCACAAATACAAGCT--G--AAA-GTTGTCATGTTTGTAACAGGAGAGTTTGACCAATACTAACTCTTAGAAGACATGTTTTTTTATGATTACTA-----------------------GAACAGACGGAC-GACATGACTTAAAA-AAATAGACATCTTCTATGGTATATGT---GATAG--ACATGAATTGCAAA-------CGTTATT---------TTATGG-G-GG-TCACTTTTTCACAGGA---------------------G-G-gaatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttccggtgaactatcacaaatacaagctgaaagttgtcatgtttgtaacaggagagtttgaccaatactaactcttagaagacatgtttttttatgattactagaacagacggacgacatgacttaaaaaaatagacatcttctatggtatatgtgatagacatgaattgcaaacgttattttatgggggtcactttttcacaggaggaatctatatataaac
gi|5 : ctcaaaagtaaacaatctattgaaaggcaaatatctaagaaagataacgtaagaagtaaaattccgccaataccagtaaccgtccataattttttttttaaaactatgaaccaacaggaatcataaaatacaaggccctggacacaaaatacagacatatacacagcacaagcaaacactaaataaccatcgtaaaaagacaccacaaacattaaataannnnnnnnnnacaaacactaaataaccatcgtaaaaagacaccacaaacactaaataagctggccggagcctcggagtgaaatgaaagcggcaacaggggatttaatttgaaaccttgtttaagatgcacaaaacctcacttttagaatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttccggtgaaATA-AC-CAGAGTAAAAATACACCACAAACATTA---TATAAGCTGGCCGGA-----TGGGT-CAA--TTGCCAGACGGCAACAGGC------ATTTGA---------------------AACTTCAC------------CTTAAAATAAGAAATTGCCATAT----------AACCTTTTTATA----C---TGTACA----ACAAAAG-GCTC-------TCA----ACGAGCAC--TTT-TTTTCTG-------------------TCAAGAGACTGTCACG-------------------TACGTTTA------TGTCCGTGTTTT-AT---CTGG-GT-CCCTCTCGCACCTGCAAACAATTCCCGAAGAACTA-TGGCTCTTCCATCACAAATACAAGCT--G--AAAAGTCGTTATATTTGTAACATGAGAGTCTAACCAAGTCTTCCTGTAAGAAGACATG---TTTTATGACTACTAGACAACCAGA--CG-G-----GCGAACATACGGAC-GGTCTAACTTATAA-CAATATACATCTTCTATG--ATGTG-C--GATAG--ACACGAGTTGCGAATAGG---CGTTA-----------TTATAGTG-GG-TCACTTTTTCACAGGA---------------------G-G-G-T--------------------GTGAGGTGTCG-TTATTTTTACAGCAATTTGTGACCGTGAGCCCGGGTCATTTTT--A--AACGTCT-AAT--A---A---TTACCG-G-GGGTCATATTCTGaatctatatataaac
gi|6 : GCCGGA-----AGGGTACCGCTTTGC--AACGGCAACCTTGGT----ATTTAAAACCTTGTTTAAGGAGCACTTAACCTTACTTTAACCC-CTTCTTAGTACCAGAAATTGTGATATCTTTTTCACCAACATTTTCTTAA--ACCATTGCACATTCTACTTAGT-ATTCAG-GCTCTTACAAAATGAATACCTTTT-TTT-CTG-------------------CCATGAAGCTATCACA-------------------CTGGTTTA-CAACGTGTCCGTGTTTTTAT---CCGG-GTGTCCCCTCATACCTGCAAACAATTCCTGCAGATCAA-TTGCTCTTCC-TCATAAATACAAGCT--G--AAATGTCGTCATACTTGTAAGACGAAAATCTAATCAATTTATCCTCTGATAAAACATA---TTTTGTGACTA-TCGACGATC-GGA-CG-G-----ACGAACAGACGGAC-GACCTAACTTGAAG-CAATACACTTTTTCTGTG--G--------GATAG--ACATAAATTGCAAACAGAGATCATTATT---------TTATAG-G-GG-TGACTTTTTTACAGGAG--------------------G-G-G-TCA--T---TTATTT--ACGCGAAGTGTGTCG-TTATTTTTAAAGAAATTTGTGACC--G-----GGGTGA--TTTTCA--AACG--T-CAACTA---A---TGACTG-T-GGA-CATTTTATGacgggaaataaagatcgggggtaatatctgaggtgggagtgg
gi|7 : CAAGTGGGTAAAGCTCCACAGCAAGTAC-AAT-------TGGAGATCAGCTATAAAGGAGCTGATTGCTTTGCATTATATTTCTGTAATCGGCGACAAAGTGATAAGT-ATTCTAGTATGCTACAAAATGCTTAGTA-TG-AAGC-G----AAATGTA-----ATTTCGT-AACTTTTAATAATGGTGATTTG-ACGA-CA------TTATGATACATGGGCATTATCAGCTT-CATGTCTAACGTGAATTCAGATT--AGTT----GTTCATTCGGAACATTCAAATTTTGATCCCCATCGCCAACCAAAATCAAATATTTTCCTAAATAC---------CACCTGTGATTTTATTGGC-ATT-------T--CACGCCGTTGTTT-ATTACCAGTATCGTATT-AAGTCGGCC----AAT---CT------TTCA-CAG----GCT-----------------TTT-CAGTTTA-CCGTAAACGACCGACATCTGC--TACAACAAACAACTAGT-----------------------TAG---GATCAACACAA--GACAA---TATAATATATGTAGTACTATAT--C---CCT-TC----T-TCA------TAGTGTA-AGGC---A-----CCGGTGGACGACTCCC----A-----GG--A--AGTACTATAGGATAAAATA-acgtgaa
gi|8 : GGTGTACCAAACCTCACTTTTACCCTCCTCTTAAAATCAAACATTGCCACAT----------AATCTCTTAAAAACCAC---TGCCCACCATATATAAG-GCTC-GAGTTCTCACATAACGAACGC--AATATTT-CTGCCAAGAAGCTATCACGCAGTCAAGAAGCTATCACGCAGTCAAGAAGCTATCACGCAGGTTTA-CAATATGTCCCTG-TTTTAT---CTAT-TTGCCCTCTCGTACCTGC-AACAATTCCCGGAGAACCA-AGGCTTTCCAATCACAAATACAAGCT------AAAGTCGTCATATTTATA-------------ACTAATTCCTCCTCTTCGAATACATG---TTTTATGACTACCTAACAAT--------------------CAGACGGAC-GAATTAACTTAAAA-CAATAGCCATCTTCTAGA--A---ATCGGGATAG--ATATGAATTGCGAATATGGGTCATTATT---------TTATAG-G-GG-TCACTTTTCC--------------------------------------------------ACGCGTAGAATTTCG-TTA---------------GTAACCG-G-----GGGTCA--T-------AAT----------A---A---TGACCA-T-GGATCACTTTCTtatag
gi|9 : TTTT------------AAAACTA-TAT---GATCAGCATGA--GTCAA---TATAATAAATATAGAACTACCTGGC---ACA-TCCTGTT-TTA------CA-CATATAGAG---T-----TTA--GCAC----CGCTGCAA-----AA--A--ATTCCTGGAAGGCTCAATA---T-G-TACTAT-AGGGTCCTTG-TACA---------GGGTTAACCCGAATCCAGAACTTCTGGATATTG--AGCCCATCAACATAAATACTAGA-CAGAAATCTACAGATCCG-T-G----------------------A-TTTTCGTCTAATGGA--AGTGCAATCAC-CCGT-GTTAGTATTTAGTGACATAACAATTATAGTGTCTCTGTGACAAAGTGGTTAAGATTTCTCT--------------TCACTATCCTATTACTATATGGTACTAAAATAGAACCATCGATTCAAAACTATA-CGAAC-TTCGAAA-AGGTAATGATCTGACACAGATC-GGCTG---------ATTCTAACAG-----G-----------AGAAGCTTACG-GGAGTC---TCCTC---AACAGAAGTAAACAAATATGAAACCAACCAG-AAACTT-TAACACACAGGctgaggatttaatgaccagggatcaatttgt
Alignments
lowQualScore : 1 222222 1 11 11 11 6666666666666666666666666666666666666 222 1 2222 66666666666666 1 2222 1 1 5555555555 11 8888888888888888888888 11111 1 333 222222 22222 666666666666666666666 2222 3333333333333 3333333333 1 1111 111 22222222222 1111 111 111111 111 222222222222 1111111111111111 444444444444444444444444444 4444444444444444 2222222 2222 11 333 222222 6666666666666666666666666666 11111 111 2 4444444444 33333333333333 111 11 1 1 11111111 1111 11 111 11 11 111 111111 222222 1 3333333333 111 1111 333 111 4444444444444444444 3333333333333333333 55555555555555 22222222222 11111111111 555555555555555555555555555555555555555 555555555555555555555555555555555555555555555
lowQualScore : 1 2 1 0 8 3 1 888888 3 11 333 4 4 00 0 0 99999 0 66 5 8 8 4444444444444444444444444444444444444 333 0 7 3 8888 0 1 99999999999999 7 2 3 3333 6 0 0 0 6666666666 0 1 33 8888888888888888888888 55555 0 1 33 111 555555 7 55555 2 1 000000000000000000000 5 1 99 3333 22 3 1 6666666666666 1 1 55 5 3333333333 1 1 111 6 4444 111 33333333333 4444 999 2 1 333333 6 777 6 1 3 555 44 1 999999999999 55 9999 0 66 888 0 6666666666666666 5 333333333333333333333333333 88 1 9999999999999999 6 1 7 6666666 3 1111 2 1 33 0 777 88 7 6 777777 0000000000000000000000000000 1 99999 333 0 1 0 1 1 22 1 7777777777 3 0 88888888888888 0 3 2 111 44 0 0 1 1 8 55555555 3 0 33 6 4 5 666 9999 11 222 4 1 6 1 0 3 6 00 1 6 1 3 3 44 11 3 99 0 1 111 5 5 555 888 777777 5 77 0 000000 1 1 0 3 1 0 1 5555555555 1 111 4444 3 1 3 3 1 6 666 3 1 222 6 6 4444444444444444444 8888888888888888888 3 5 5 888 5 5 3 99999 44 0 4 1 1 777 44444444444444 4 1 0 4 1 22222222222 55 1 11 55555555555 7 3 3 555555555555555555555555555555555555555 55 1 3 555555555555555555555555555555555555555555555 0 888 1
lowQualScore : . . . . . . . ...... . .. ... . . .. . . ..... . .. . . . ..................................... ... . . . .... . . .............. . . . .... . . . . .......... . . .. ...................... ..... . . .. ... ...... . ..... . . ..................... . . .. .... .. . . ............. . . .. . .......... . . ... . .... ... ........... .... ... . . ...... . ... . . . ... .. . ............ .. .... . .. ... . ................ . ........................... .. . ................ . . . ....... . .... . . .. . ... .. . . ...... ............................ . ..... ... . . . . . .. . .......... . . .............. . . . ... .. . . . . . ........ . . .. . . . ... .... .. ... . . . . . . . .. . . . . . .. .. . .. . . ... . . ... ... ...... . .. . ...... . . . . . . . .......... . ... .... . . . . . . ... . . ... . . ................... ................... . . . ... . . . ..... .. . . . . ... .............. . . . . . ........... .. . .. ........... . . . ....................................... .. . . ............................................. . ... .
lowQualScore : 0 0 0 7 8 2 2 888888 5 00 000 2 2 22 2 8 44444 8 44 6 0 0 1111111111111111111111111111111111111 333 7 3 3 3333 7 0 00000000000000 3 0 7 3333 7 2 0 8 2222222222 2 0 88 8888888888888888888888 88888 0 0 22 555 222222 0 00000 5 2 222222222222222222222 2 0 22 3333 00 7 0 8888888888888 0 4 88 0 2222222222 4 0 333 7 2222 777 00000000000 2222 333 5 0 333333 7 555 7 7 7 333 77 0 333333333333 44 0000 4 99 888 3 0000000000000000 7 666666666666666666666666666 77 7 0000000000000000 7 7 8 2222222 2 1111 5 0 88 8 000 33 3 7 000000 0000000000000000000000000000 0 33333 777 7 0 0 0 0 00 0 3333333333 7 7 00000000000000 7 2 5 000 22 0 0 0 2 8 00000000 0 2 55 5 5 6 000 8888 22 444 0 4 7 0 8 7 7 22 0 7 0 8 2 00 00 2 22 7 5 777 0 0 666 888 000000 7 99 7 777777 4 4 7 0 7 4 0 0000000000 4 888 8888 2 0 7 5 0 7 000 3 0 777 7 7 3333333333333333333 8888888888888888888 6 0 1 888 7 7 6 66666 66 9 1 0 0 888 11111111111111 0 6 9 0 0 11111111111 00 0 11 00000000000 3 6 6 999999999999999999999999999999999999999 00 2 6 222222222222222222222222222222222222222222222 4 666 0
consensus : NNNNNNNNNNNNNNNNTCACATGTGCGGTAGCACTATGTGAGGTGTATTCAATTACTATTCGTAAATTTCACCAAGTATAGCTCATATTACGCATGACTATTCAGTAATGCTCTGTTGCCCTTTAAGTANAATATAGCGACTGGTTGATTTGCTNATCGATTGATTATTTTAAAAGTTCATAACCTACATTTTAATT------GTANCA-NCACATTTTAACCAAGTATTTCCTGAGCGCCGCACGGTAAGCTCCAATATGGACGAAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGTATTTGTCTTGTGCTTGGATGTC-TGCGTGTTGTTTCCTGTTGGTTTCACATTTGTTTACTTTTTATCTTCCATCAAAGTATAC-CCCCTT-TGGAC------------GTTGATTAAATGATTTCA-C-GTA-CTTTTA---ATTTTCGGGTGTCCACAAATGATATTGT-ATT----CAATGAAATTGTTCGTTGTATAGTCGAGCGTANTGTCCC-----G------CTCTTGTATTACCGTATTCTCAATGCGCATCT-TTTCATTTCATTGTACAGGTGGGAAAAGCTCCAC-GGCGNGTAC-ATT------TGGAGATCAGCTATAAAGGAGCTGACCGCNTTGCGT--TAT----------------------ATA--T-NTT-TAGTNTGCTACAAAGTGCTTAGTAT-GCAATC-G----AAAGATA-----ATTTCATGAACTTTAAATAATGGTGATTTG-A-GA-CA------T------ACATGGGCATTATCAGCTTTCATGNCTAGCGTGAATTCAGATT--AGTT----GTTCATGCGGGGCAGCCAGATTTTGATCCCCATTGCCAACCGNAATTCAATGTCTTCCTGAATAC---------CACCTGTGAGTGCGTTGATGATT-------T--TACGCCGTCGTTTAATTGCCAGTATCATATNACGG-CGGTC----AAT---CT------TTCG-TAG----GCTC--TACCAGTGCTGA--TCT-CAGTTTA-CTGTAAACGACCGACATCTACAATACCACATGCAACTAGTTTT------------AAAAATA-TAG---GATCAGCACGA--GACAA---CATAATATATGTAGTACTACAT--C---ACT-TC----T-TCA------TA-TGTA-AGGA---T-----CCAATGCACGACTCCCTGGAA------A-------AAGT-ACTATAGGGTAAAACA-A-T-G-GACTTTCAAAATTCTCGGTATA-ATCGTGACNGG--AAATCGAACCCAGG-CCTCTGGATTATGGATTCCATTAACATAAATACTAGA-CA-AAATCTACAGATCCG-T-GGAAGTCAAA--A--AATCC-AGA-TTTTNCTCCAA--GACCAGTGCAATCAAACCGTATNAAGTATTTAGTGGCATAACAGTTANAGNGCCTCTGTGACGGAGTGGTNNAGATNTCTCTCTG-------CCAGTCGCTATCTCATCGCTATATGGT----AAATAGAATCGTCGATTCAAAACTA-A-CAAAC-GTTG-AA-AGGCAAANATCTAACACAGATC-CG-TGAGAAGTAAAATTCTGCCAGTACCGGTANCCGTCCATAGNAGCCT-CGTGGAGTCC-TTCCTCCAAAATAAAAGTTAA-AAATANGAAACCAACAGG-AAACAT-TAACACA-AGGCCCTGGGCACAAAACACAGACATCCACACACA--AGACA--CAATCACAAGCAAACAATA---TATA-AC-CAGAGTAAAAAGACACCACAAACATTA---AATAAGCTGGCCGGA-----GGGGT-CAG--TTGCCAAACGGCAACAGGGG-----ATTTGAAACCTTGTTTAAGGTGCACCAAACCTCACTTTTACCCTCCTCTTAAAATCAGAAATTGCCATAT----------AATCTCTTTATAA--AC---TGCACACTGTACATANG-GCTC-G-GCTCTCACATANCGAACAC--TTT-TTT-CTG-------------------TCAAGAAGCTATCACG-------------------CAGGTTTA-CAATATGTCCGTGTTTTTAT---CCGG-GTGCCCTCTCGTACCTGCAAACAATTCCCGGAGAACCA-TGGCTCTTCCATCACAAATACAAGCT--G--AAAAGTCGTCATATTTGTAACACGAGAGTCTNACCAATTCTTCCTCTNANAAGACATG---TTTTATGACTACTAGACAATC-GG--C--G-----ACGAACAGACGGAC-GACCTAACTTAAAA-CAATANACATCTTCTATG--ATGTGTC--GATAG--ACATGAATTGCGAATAGGGGTCATTATT---------TTATAG-G-GG-TCACTTTTTCACAGGA---------------------G-G-G-TCA--C---T--TTT--ACGCGTAGGGTGTCG-TTATTTTTACAGCAATTTGTGACCGTG-----GGGTCA--TTT--A--AACG--T-GA---A---A---TGACCG-G-GGGTCANTTTCTG
Reference ( family-816 ) : NNNNNNNNNNNNNNNNTCACATGTGCGGTAGCACTATGTGAGGTGTATTCAATTACTATTCGTAAATTTCACCAAGTATAGCTCATATTACGCATGACTATTCAGTAATGCTCTGTTGCCCTTTAAGTANAATATAGCGACTGGTTGATTTGCTNATCGATTGATTATTTTAAAAGTTCATAACCTACATTTTAATT------GTATCA-NCACATTTTAACCAAGTATTTCCTGAGCGCCGCACGGTAAGCTCCAATATGGACGAAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGTATTTGTCTTGTGCTTGGATGTC-TGCGTGTTGTTTCCTGTTGGTTTCACATTTGTTTACTTTTTATCTTCCATCAAAGTATAC-CCCCTT-TGGAC------------GTTGATTAAATGATTTCA-C-GTA-CTTTTA---ATTTTCGGGTGTCCACAAATGATATTGT-ATT----CAATGAAATTGTTCGTTGTATAGTCGAGCGTANTGTCCC-----G------CTCTTGTATTACCGTATTCTCAATGCGCATCT-TTTCATTTCATTGTACAGGTGGGAAAAGCTCCAC-GGCGNGTAC-ATC------TGGAGATCAGCTATAAAGGAGCTGACCGCNTTGCGT--TAT----------------------ATA--T-NTT-TAGTNTGCTACAAAGTGCTTAGTAT-GCAATC-G----AAAGATA-----ATTTCATGAACTTTAAATAATGGTGATTTG-A-GA-CA------T------ACATGGGCATTATCAGCTTTCATGNCTAGCGTGAATTCAGATT--AGTT----GTTCATGCGGGGCAGCCAGATTTTGATCCCCATTGCCAACCGNAATTCAATGTCTTCCTGAATAC---------CACCTGTGAGTGCGTTGATGATT-------T--TACGCCGTCGTTTAATTGCCAGTATCATATNACGG-CGGTC----AAT---CT------TTCG-TAG----GCTC--TACCAGTGCTGA--TCT-CAGTTTA-CTGTAAACGACCGACATCTACAATACCACATGCAACTAGTTTT------------AAAAATA-TAG---GATCAGCACGA--GACAA---CATAATATATGTAGTACTACAT--C---ACT-TC----T-TCA------TA-TGTA-AGGA---T-----CCAATGCACGACTCCCTGGAN------A-------AAGT-ACTATAGGGTAAAACA-A-T-G-GACTTTCAAAATTCTCGGTATA-ATCGTGACNGG--AAATCGAACCCAGG-CCTCTGGATTNTGGATTCCATTAACATAAATACTAGA-CA-AAATCTACAGATCCG-T-GGAAGTCAAA--A--AATCC-AGA-TTTTNCTCCAA--GACCAGTGCAATCAAACCGTATNA-GTATTTAGTGGCATAACAGTTANAGNGCCTCTGTGACGGAGTGGTNNAGATNTCTCTCTG-------CCAGTCGCTATCTCATCGCTATATGGT----AAATAGAATCGTCGATTCAAAACTA-A-CAAAC-GTTG-AA-AGGCAAANATCTAACACAGATC-CG-TGAGAAGTAAAATTCTGCCAGTACCGGTANCCGTCCATAGNAGCCT-CGTGGAGTCC-TTCCTCCAAAATAAAAGTTAA-AAATANGAAACCAACAGG-AAACAT-TAACACA-AGGCCCTGGGCACAAAACACAGACATCCACACACA--AGACA--CAATCACAAGCAAACAATA---TATA-AC-CAGAGTAAAAAGACACCACAAACATTA---AATAAGCTGGCCGGA-----GGGGT-CAG--TTGCCAAACGGCAACAGGGG-----ATTTGAAACCTTGTTTAAGGTGCACCAAACCTCACTTTTACCCTCCTCTTAAAATCAGAAATTGCCATAT----------AATCTCTTTATAA--AC---TGCACACTGTACATANG-GCTC-G-GCTCTCACATANCGAACAC--TTT-TTT-CTG-------------------TCAAGAAGCTATCACG-------------------CAGGTTTA-CAATATGTCCGTGTTTTTAT---CCGG-GTGCCCTCTCGTACCTGCAAACAATTCCCGGAGAACCA-TGGCTCTTCCATCACAAATACAAGCT--G--AAAAGTCGTCATATTTGTAACACGAGAGTCTNACCAATTCTTCCTCTNANAAGACATG---TTTTATGACTACTAGACAATC-GG--C--G-----ACGAACAGACGGAC-GACCTAACTTAAAA-CAATANACATCTTCTATG--ATGTGTC--GATAG--ACATGAATTGCGAATAGGGGTCATTATT---------TTATAG-G-GG-TCACTTTTTCACAGGA---------------------G-G-G-TCA--C---T--TTT--ACGCGTAGGGTGTCG-TTATTTTTACAGCAATTTGTGACCGTG-----GGGTCA--TTT--A--AACG--T-GA---A---A---TGACCG-G-GGGTCANTTTCTG
gi|1 : TCACATGTGTGGTAGCATTATGTGAGGTGTATTCAACTACTATTTGTAAATTTCACCAAGTATAGCTCATATTACACATGAGTATTCAGTAAAGCTCTGTTGCCCTTTAAGTAGAATATAGCGA--------TTTGCTGATCGTTTGATTATTTTAAAAGTT-ATAACCTATATCTTAATT------GTATCA-GCACAGTTTAACTAGGTATTTCATGAACGCCACACGATAAGCTTCAATATGGACACAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGTATTTGTCTTGTGCTTGGATGTC-TGCATGTTGTTTCCTGTTGGTTTCACATTTGTTTACTTTTTATCTTCCATCAAAGTATGC-CCCCTT-TG-AC------------GTTAATTAAATGATTTCA-CCGTAACTTTTA---ATTTTCAAGTGTCCACAAATGATATTGT-ATT----CAATGAAAATGTTTGTTGTATAGTCAAGTATTTTGTCCC-----G-------TCT-GTATCATCATAATCTCAATGTGCA-------CATTTCATTGTACAGGTGGGAAAAGCTCCAT-GGCATATACTATTGGAGAATGGAGATCAGCTATAGAGGAGCTGACCACATTGTGT--TAT----------------------ATA--T-TTT-TAATGTACCATAAAGTGCTTAGTATTGTAGTCTGCTACAAAG-TATTAGTATTTTATGAACGTTAATTAATCATGATTTG-A-----A------T------ACATAGGCATAATCAACTTTCATGAATGACATGAATTCAGATT--AGTT----GTTCATGCGGTGCAGCCAGATTTTGATTGCCATTGCCAATAGTAATTCAATGTCTTTCTGAAT------------------GAGTGCATTGAGGATT-------A--TATATCATTTTATAATAATTAGTATCATATTAAGGGCGGTC----AAT---CT------TTTG-TAG----GCTC--TACGAGTGTTGA--TCT-CAATTTA-CTGAAAACAGCTGACATCTACAATACAACGTGTAAATAGTTTT------------AAAAATA-TAG---GATCAGCACAA--GACAA---CATAATACTTGTAGTATTACAT--C---ACT-TC----T-TCA------TACTGTA-AAGA---T-----TCAAAGCACAACTCCCT---T------A-------AAGT-GCTATGGGGTAAAACAGA-T-G-GACTTTCAAAATTCTCTGTATACATCGTGACTGG--AAATTGAACCCAGG-----TGAATTATGGATTC-ATTAACACAAATATCA----A-AAATCTACAGATCTG-TAGGAAGTCAAA--AGTAATCCCAGA-TTTTACTCCAA--GACCAGTGCAATGAAACCATAAAAAGTATTTAGTGGTATAACAGTTAGAGGGCCTCTGTGACGGAGTAGTATAGATATCTCTCTGTCAGCTGCCAGTCACTGTCTCATCGTTATAAGAT----AAATAGAATCATCAACTCAGAACTA-A-CAAAC-GTTG-AA-AGGCAAAGATCTTACACAGATC-CG-TAAAAAGTCAAATTCTGTTAGTACCAATAGCCGTCTATAGTAGCCT-TGTGGAGTCC-TTCCTCCAAAATAAAAATTAA-AAATACGAAACCAACAGG-AATCAT-TAACACC-AAGCCCTGGGCATAAAACACAGACATTCGCACACA--AGACA--CAATTACAAGCAAACAACA---TATA-AT-CAGAGTAAAAAGAAACCACAAACATTA---AATTAGCTGGTCAGA-----GGGGT-CAG--TTGCCAAATGGCATCAGGGG-----ATTTGAAACCTTTTTTAAGGT-TACCAAACCCCACTTTTACTCTCCACTTAAAATCAGAAATTGCCATAG----------AATGTCTTTATAA--AC---TGGACACTGTACATATG-GCTC---GCTCTCACATATCAAACAC--TTT-TTG-CTT-------------------TAAAGAAGTTATCGCA-------------------CAGG-TCA-CAATATGTATGTGTTTTTAT---CAGG-GTGCCCTCTCTTACCTGCAAATAATTCCCAGAGAACCA-TGACTCTTCCATCAAAAATACAAGCT--G--AAAAGTCATCATATTTGTAACAT--GAGTCTTACCAATTCTTCCTCTTACAAGACATG---TTTTATAACTGTCAGACAATC-AG---------------ACAGACGGAC-GACTTAA-TTAAAA-CAATATACATTTTCTCTG--ATGTGTT--AATAGAAACATGAATTGCAAATAGGGGTCATTATT---------TCATAGTG-GG-TCATTTTTTCACAGCA---------------------GCG-T-TTA--C---T--TTT--ACTTATAGGGTGTCA-TTATATTTACAGCAATTTGTGACCATG-----GGGTCA--TTT--A--A-----TAAA---A---A---TGACTG-GCAGATCAGTTTCTG
gi|10 : ctgtctgtcacatattACACTGTGT-TAAGAGCTCTA-GTGTTCACAGAGCAAATAC--TTT-TTT-TTG-------------------TTCGGAAGCTATCACT-------------------CTGGTTTA-CAATATGTCCGCGTGTTCATCAACCGG-ATGTACTCTCACACATTTAAACGGTTCCCGG-GAAGCACTGGCTTTTCCTTTCCAAAAACAATGT--GAAAAAAATCGTCTTATTTGTAACACG-----------AATTCTTCCTCTGATAAGACATG---ATTTATGACTACTAAACAATCGGG--CG-G-----ACGAACAAAAGAGC-GA-TGAACGTAAAAGCAATGCACATCTTC-----------TC---------ACATAAAAT----ATAGGG---------------------------GG-TCACTTTTTTACAGGA-------------------------G-TCA--T---T--TTT--ATGC-TAATGTGTCG-CTAATTTCACAGCCATTGATGGCC--A-----GTGTCT--TTT--AGTGATG--T-GAAGTA---A---TGACGG-G-TGGTCAt
gi|11 : CCATCCATAAAAGTCT-TGTGGGGGCCATTCCTCTAGAATAAGAATTGA-AAACAAGAAACCAATAGG-AAACAT-TAACACG-AGGCAATGGGCACGAAACACAAATATCCACACACA--AGGCA--CAATCACAAGCAAACAATA---TATA-AC-T-GAGTAAAAAGACACCACACTCATTA---AATAAGCTGGCCAGA------GGGT-CAG--TTGCCAAA-------------------TTACCACC-------AGGTGCACTAAACCTAACTTCTACCGGCCTCTTAAAATTAGAAATTGCCATAC----------AGTCTCTTTTTAA--AC-------CACTATACAT-TG-GCTT-GAACTCTCACATATCCAATAC---TT-TTT-CTG-------------------TCTAGAAGCTATCACA-------------------CAGGCTTA-CAATTTTTCCGTGCCTTTAaatagtgtta
gi|12 : aGCATTATAATATTTTATGCCCAGCGCGAATTAAGATT--AGTTTT--GTAAATGCGGGTCAGCCTGACTTTGATCCCCATTGCCAACCGAAATTCAATGGCTTCCTTAATACTATGACTTCCACTTGTGCGGGTGTTGATTATTACGTAATT--TATACAATCATGTAACTACCAGTTTTATATATCTG-CGGTCTTCCAAG---CT------CAAGCTTG----GTTCCATACCAGTGCTGA--TCT-CAGTATA-CTGTAAACGAAGGACATCTACAATATCACATGCAACTAGTTTT------------AAGAATA-TAG---TCACAGCACGA--GACAA---GATTATATATGTAATACTACAT--C----CTGTT----TGTCG------TA---TA-AGGAGTGT-----ACA--GCACGACTCCCa
gi|13 : atCGTTATTA---TTCATGGCAAGTGTGAATGTAATTC--AGTT----GGTCATAC------------TTTCGATCTCTAATGTCACCCACAATTCAATGTATTCCTGAATAC---------AACCTGTGGGTGGGT--ATGGTT-------TGTTACACCGTCATTTAATAGTCAGTTCCATATTACGG-CCGTC----AAT---AC------GTAA-TAG----GCTC--TACCAGTA----------------------AAATG-CC-ACATGTA----ACCA----------GTTTT------------TAAAACA--AA---AA-CAAAACAATTCACAACAACAAAATATATGTAGTACT-CCC--C---ATT-TT----T-ACA------T--TGTG-TGTA---TCA---CCAATACACATTTTCCTGGAA------AGCCCAACAAGT-ACTATAAGGTTAAACA-A-TAG-GAC
gi|14 : TCACATGTGCGGTAGCACTATGTAAGGTGTATTGAATTATTTTTCGTAAATTTCACCAAATAAAGCTTTAATTACGCATGACTATTCAGTAATGCTCTGTTACCATTACAGTTAAACATAGTAATTGGTTGATTGGCTCACTGATTGATTATTTTAAAAGTTAA-AGACTACATTTAAATT------GTA-CATCCACATTTTAATCAAATATTTCCTGAGCGCCACATGG-AAGCTTCAATATTGACGAAGTGGAAGACTTTGGTTTTATACTGTGGTTTGCTTATAAATGTTTTCTACTTGGA---------TGTTGTTT------------ACATTTG-----------TCTTCCATCAAAGTATAC-CCCTTT-TGGAC------------GTTcggaaattggatccagttctacggaaa
gi|15 : gCTATCACG-------------------TATGTTTA-CACTATGTTCATGTTTTTA----CCGGTGTGCCCTTTCGTACCTGCAAACAATTCCCGGAGAACGA-AGGTACTTCAATCACAAATGCAAGCT--G--AAAAGCCGAACTATTTGTAACACGAGAGTCCAACAAATTCTTTCTCTTAGAGTACATG---TTTTATAAATACTAAACAGTC-AGATG--G-----ACGAAAAGACGGAC-GACCTAACATTAAA-CAATATATATCTTCTATG--ATGT-TC--GATAG--ACATGCATTGCGAGTAGAGGGGA-TGTT---------C----G-G-GG-GCATTTTCTAACGGGAAATTATGACAG----------G-G-G-TCA--A---T--TT------CTGAGGGTGTCG-AAATTTtttaggttaa
gi|16 : GAGAACCA-TGGCTGTTCCTTCGCAAATACAAGCT--G--AAAAGTCGTCATATTTGCAACACAAGAACCTTATTAACTCTTCCTCTGATCAG--ATG---CTTTATGATTACTAGACAATG-AGACT--G-----ACGAACAGACGGAC-GAACTAAC--AA----AGTAGACATATTCCATT--ACGTG-A--GATAG--ACATGAATTGTAAATAGTGGTCACTGTT---------GAATGG-G-GG-TCACATTTTCACAGGAAAAAAAAAATTTTCGCAGGAGG-G-A-TCACTC---T--TTT--ACGCGTAGGGTGTCG-TTATTTTTA---CAATTTGTGACCGccgtt
gi|17 : ATA-AAG---GATCACCACGA--GACAA---CATATCAGATGTAGTACTACAT--TCGTACT-T-----T-TCAGATAATTAGTGTATAATA---TTATCACCAATGCACGACTTCCTGGAATTCTCAAC------AAGT-ATCATAATGTAAAACA-AAT-ACGATTTTCGAAATTCCCGGTAT----CGTGACGGG--AAATCGAACCCAGGTCCTCTGGATTGTGG-TTTCATTAACCTAAACACTAAACCA-AAATCAACAGGTCCGTT-GGAAATCAAAATA--AATCC-AAAGTTCTTCACCAA--CGCCAGTGCAACC-AACCATAT
gi|18 : -AAATAAAAAA--AATA---AAACAT--AACCCA-AGGCCCTGTGC-CAAAACAGATACATCTACACACA--AGACA--CAATCACAAGCGAACAATAATATATG-AC-CAGCGTAATAAGACACCATAAACATTATTAAGTATGCCGGTCGGA-----GGGGT-CAG--TTGTCAAACGGTAACAGGGG-----ATTTGAAACCTTGTTTAAGGTACACCATACCTCACTTTTTCC
gi|18 : TTTT-T---CCGG-ATGCCCTCTCGTACTTGCAAACggatgccctctcgtacttgcaaaccaagtcttcctttcaga
gi|19 : aaataaaaaaaataaaacataacccaaggccctgtgccaaaacagatacatctacacacaagacacaatcacaagcgaacaataatatatgaccagcgtaataagacaccataaacattattaagtatgccggtcggaggggtcagttgtcaaacggtaacaggggatttgaaaccttgtttaaggtacaccatacctcacGATCATTTCAAAAGTTCATAACCTACATTTCAATTTCAATTGTAACA-ACACATTTTAACCAAGTATTTCCTGAA--------GGT---CTCCAATATGGACGAAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGAATTTGTCTTGTGCTTGGATGTC-TGCGTGTTGTTTCCTGTTGGTTTCACATTTGTTTAC-TTTTATTTTCAATCAACATATAC-GCCCTT-TAGA--------------TT-----AATGTTTTTA-T-GTcaagtcttcctttcaga
gi|2 : AGGAGGACTCTGGTTATATAATGTAGTTTACTTGTATT------GTGCTTGGATGGC-TGCGTGTTGTTTCCTGTTGGTTTCACAAACGTTTACTTTT-ATTTTCCATTAAAGTATACGTCCTTT-TGGAC---------------------------TTA-C-GT----TTTATAGGTTTTCAGGTGTTCATAAATGATATTGTCATTGTTTCAATGAAATTGTTCGCTGTATATTCGAGCATACTGTCCT-----GAGATAACTCTTGTATTACCGTTTTCTCAATGAACATCT-TTTTCTTTCATTGTACAGGTCGAAAAAGCTGCACAGGTG-GTAC---------------------TATAAAAGAGCTGACCGCATTGCGT--TGT----------------------ATT--T-GTT-TTGTCGGCTACAAAGTGCTTAGTAT--CAATC-A----AAAGATA-----ATTTCATGAACTTTGAATAATGGTGATTTG-A-AAACAGTATAAT------ACATGGGCATTATCAGCTTTCATGACTAGTGTGAATACAGATT--AGTT----GTTAATGTGGGGCAGACAGATTGTGATCCCACTTGCCAACCGGAAGTCAATGTCTTCCTGAATCT---------CTCCCGTGAGAGCGTT-ATGATC-------T--TACGTCGTT-TTTAATTGTCAGTATCATATCCCGG-CGAAC----AAT---CT------TTTG-TAG----ACTT--TACGAATGTTGA--CCTCCAGTTTA-CTATAAACGACGGACATCTAC--TACCACATGTAATTAGTTTTAAAAATAAAGTAAAAAATA-TAGTATCATCAGAACGA--GACAA---CATTATATATGTAGTACCACAT--C---CCG-TC----T-TCA------TACTGTA-AAGC---A-----CAAATGCACGACTCCCTGGAA------A-------TAGT-AC---AGCGT--AAC---------ATTTTTATGATTCGCGGTATA-ta
gi|20 : ACATCTTCTATG--GTGAGT---GAGAG--ACATGACTGGCAAATAAGGGTCATTATTAGAAATAAGTTATAA-GAGG-TAATTATTTCACAGAA---------------------G-GTG-TCA--T---T--TTTTTACGCGTAGTGTTTCG-TTATTTTTACAGCCATTTGTG-CCAT---------T----TTC--T--GACG--T-GA---GATTA---TGACCGAG-GAGTCGATTTCT
gi|21 : aCTG-------CCAATCGCTATCTCACCA----AT---------ATAGAATCGTCGATTTAA----A-A-CAAAC-ATTG-AATATGCCAATATCTAA-ACAGATC-CA--GAGAAGTAAAAGACTGCTTCTACCGGTATCTG-CCATAACAGCCaaggaggtatataaaaattacgtaacatc
gi|21 : C-TTCCTCCAAAATATAAGTTAA-ACATAAGaaatgagtatctgtgggatttaaacctttttaatcctactaggagaggcttcctccaaaatataagttaaacataag
gi|22 : ctgccaatcgctatctcaccaatatagaatcgtcgatttaaaacaaacattgaatatgccaatatctaaacagatccagagaagtaaaagactgcttctaccggtatctgccataacagccaaatgagtatctgtgggatttaaacctttttaatcctactaggagaggTTATAATTCCAAACTTAA--AAAAAACATCATATTTATAACACGCGAGATTCACCCATT-TTCCTCTAATATGACATG---TTTTACGACTACTGGACAACCGGG--C--GGATAAACAAACTGACGGCCTGGCCTATCTTAAAA-CAATACACCTCTTCTATA--ATGTGT---GATAG--ACACGAACTGCAAATATGCGTCAT
gi|23 : cTATGACTACTAGACAATC-AG--CCGG-----ACCAACAGACTGAC-GACCTAACTTAAAA-TAAAAGACATTTTCCAAG--ATGTGTA--AA-AG--ACATGAATTGCGAATAGAAGTCATTATT---------TAATAG-G-GG-TCACTTTTTCACAGGA---------------------G-GCG-TCA--CTTTT--TTT--ACGCGTAAGATGTCG-T--TTTTTACAGCAAT
gi|24 : aTAATTGCCAGTATTATATGATTG-GGTTC----GATAGTCTGTATGATTTA-TAACTCAGTTCCATACCACTACTGACCTCT-CA---TAGCTGTAATCAACTGGCATCTTTAATAACACATCAAACTAGTTTT------------AAGAATATTAG---AATCAGCACGA--GATAA---
gi|25 : aTTATT---------TTATAG-G-GGGTCACTTTTTCAGAGGA---------------------G-G-GGTCA--CA--T--TCT--ACGCGAAGAGTATCG-TTATTTATACATCAATGTGGGACCG-G-----GGTTCA--T
gi|26 : TA-AC-CAGAGCAAAAACACACCACAAACATTA---AATAAGCTGGCCGGA-----GGGGT-AAA--CTGCCAAACGGCAACAGGGG-----ATTTGAAACCTTGTTTAAAGgattttgcattgaaatgtc
gi|27 : gGG---------------------G-G-G-TCA--CCT-T--TTT--ACGTGTGGAGTGTCGTTTTTTTTTACGTTAACTTGTGACCG-A-----TGATCA--TTTTCT--AACG--T-GA---A---ATACTGATTG-G-GGc
gi|28 : CA--CACTCACAAGCAAACAGTA---TATACACTC-------AAAGATACATTAAACATTA---AATATGCTGGCCAAA-----TGG
gi|29 : gG-------------------TCAGGAAGCTTTCAAG-------------------C-GGTTTAACAGTATGTCCGTG-TTTTAT---C
gi|3 : TCACATGTGCTATAGCACTATGTGAGGTGTATTCAATTACTATTCGCAAATTTCACCAAGTATAGCTCATGTTACGCATGACTATTCAGTAATGCTCTGTTGCCCTTTACGTACAATATAGCGACTGGTTGATTTGCTAATTGATTTATTATTTTAATAGTTCATTACTTACATTTTAATT------GTACCT-TTTCATTTTAACCAAGTATTTCCTGAGCATCGCATTGCAAGCTCCAATATAGACGAAGAGGATGACTCTGGTTATATAATGTGGTTTGCTTGTATTTGTCTTGTGCTTGGAT-TCATGTGTGTTGTTTCCTTTTGGTTTCACATTTGTTTAC-ATTTATCTTCCCTCTAAGTTTGC-CCCCTTGTGGACTTACCTTTTGGTGTTGATTAAATAATTTCAGT-GTACCTTTTA---ATTTTCGGATGTCCACAAATGA-----T-ATT----CAATGAAATTGTTCGTTGTATAGTCGAGCGTAATGTCCTTGATAG------CTCTTGTATTA-TGTATTCTCAATGCGCATTTGTTTCATTT-ATTGTACACGTGGGACAAGCTCCCC-AGCGGGTAT-TTC------TGGAGATTAGCCGTGAAGAAGCTGACTGCCTTGTGT--TAT----------------------ATA--TATTT-TAATCTG---CAAAGTGCTTAGTAT--CAATC-G----AAAGACA-----ATGTTATGAACTTTAGATAATGATGATATGAA-GA-CA------T------ACATGGGCATTATCAGCTTTCATCACTAGCGTGAATTCAGATTCAAGTTAGTGGTTCATGCGGGGCAGTCAGGTTTTGTTCCCTATTGCCAACCGAAAGTCAATGTt
gi|30 : gtctg-G-GACTTTCAAAATCCTCAGTATA-ATCGTTACCGG--AAGTCGAA
gi|4 : TCAAAAGTA-AACAATCTATTG-AA-AGGCAAATATCTAAGAAAGATAACG-TAAGAAGTAAAATTCCGCCAATACCAGTAACCGTCCAT--------------AATTT-TTTTT------------TTAA-AACTATGAA-CCAACAGG-AATCATAAAATACA-AGGCCCTGGACACAAAATACAGACAT--ATACACA--G----------CACAAGCAAACACTA---AATA-AC-CATCGTAAAAAGACACCACAAACATTA---AATAA
gi|4 : cACAAGCAAACAC-TAA-ATA-A--CCAT---CGTAAAA---AGACA-CCACAAACATTAAATAANNNNNNNNNNACAAACACTA---AATA-AC-CATCGTAAAAAGACACCACAAACACTA---AATAAGCTGGCCGGAGCCTCGGAGT-GAA--ATG-AAAGCGGCAACAGGGGATTTAATTTGAAACCTTGTTTAAGATGCACAAAACCTCACTTTTAnnnnnnnnnnacaaacactaaataaccatcgtaaaaagacaccacaaacactaaataagctggccggagcctcggagtgaaatgaaagcggcaacaggggatttaatttgaaaccttgtttaagatgcacaaaacctcacttttagaatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttccggtgaactatcacaaatacaagctgaaagttgtcatgtttgtaacaggagagtttgaccaatactaactcttagaagacatgtttttttatgattactagaacagacggacgacatgacttaaaaaaatagacatcttctatggtatatgtgatagacatgaattgcaaacgttattttatgggggtcactttttcacaggaggaatctatatataaac
gi|4 : ctcaaaagtaaacaatctattgaaaggcaaatatctaagaaagataacgtaagaagtaaaattccgccaataccagtaaccgtccataattttttttttaaaactatgaaccaacaggaatcataaaatacaaggccctggacacaaaatacagacatatacacagcCTATCACAAATACAAGCT--G--AAA-GTTGTCATGTTTGTAACAGGAGAGTTTGACCAATACTAACTCTTAGAAGACATGTTTTTTTATGATTACTA-----------------------GAACAGACGGAC-GACATGACTTAAAA-AAATAGACATCTTCTATGGTATATGT---GATAG--ACATGAATTGCAAA-------CGTTATT---------TTATGG-G-GG-TCACTTTTTCACAGGA---------------------G-G-gaatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttccggtgaactatcacaaatacaagctgaaagttgtcatgtttgtaacaggagagtttgaccaatactaactcttagaagacatgtttttttatgattactagaacagacggacgacatgacttaaaaaaatagacatcttctatggtatatgtgatagacatgaattgcaaacgttattttatgggggtcactttttcacaggaggaatctatatataaac
gi|5 : ctcaaaagtaaacaatctattgaaaggcaaatatctaagaaagataacgtaagaagtaaaattccgccaataccagtaaccgtccataattttttttttaaaactatgaaccaacaggaatcataaaatacaaggccctggacacaaaatacagacatatacacagcacaagcaaacactaaataaccatcgtaaaaagacaccacaaacattaaataannnnnnnnnnacaaacactaaataaccatcgtaaaaagacaccacaaacactaaataagctggccggagcctcggagtgaaatgaaagcggcaacaggggatttaatttgaaaccttgtttaagatgcacaaaacctcacttttagaatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttccggtgaaATA-AC-CAGAGTAAAAATACACCACAAACATTA---TATAAGCTGGCCGGA-----TGGGT-CAA--TTGCCAGACGGCAACAGGC------ATTTGA---------------------AACTTCAC------------CTTAAAATAAGAAATTGCCATAT----------AACCTTTTTATA----C---TGTACA----ACAAAAG-GCTC-------TCA----ACGAGCAC--TTT-TTTTCTG-------------------TCAAGAGACTGTCACG-------------------TACGTTTA------TGTCCGTGTTTT-AT---CTGG-GT-CCCTCTCGCACCTGCAAACAATTCCCGAAGAACTA-TGGCTCTTCCATCACAAATACAAGCT--G--AAAAGTCGTTATATTTGTAACATGAGAGTCTAACCAAGTCTTCCTGTAAGAAGACATG---TTTTATGACTACTAGACAACCAGA--CG-G-----GCGAACATACGGAC-GGTCTAACTTATAA-CAATATACATCTTCTATG--ATGTG-C--GATAG--ACACGAGTTGCGAATAGG---CGTTA-----------TTATAGTG-GG-TCACTTTTTCACAGGA---------------------G-G-G-T--------------------GTGAGGTGTCG-TTATTTTTACAGCAATTTGTGACCGTGAGCCCGGGTCATTTTT--A--AACGTCT-AAT--A---A---TTACCG-G-GGGTCATATTCTGaatctatatataaac
gi|6 : GCCGGA-----AGGGTACCGCTTTGC--AACGGCAACCTTGGT----ATTTAAAACCTTGTTTAAGGAGCACTTAACCTTACTTTAACCC-CTTCTTAGTACCAGAAATTGTGATATCTTTTTCACCAACATTTTCTTAA--ACCATTGCACATTCTACTTAGT-ATTCAG-GCTCTTACAAAATGAATACCTTTT-TTT-CTG-------------------CCATGAAGCTATCACA-------------------CTGGTTTA-CAACGTGTCCGTGTTTTTAT---CCGG-GTGTCCCCTCATACCTGCAAACAATTCCTGCAGATCAA-TTGCTCTTCC-TCATAAATACAAGCT--G--AAATGTCGTCATACTTGTAAGACGAAAATCTAATCAATTTATCCTCTGATAAAACATA---TTTTGTGACTA-TCGACGATC-GGA-CG-G-----ACGAACAGACGGAC-GACCTAACTTGAAG-CAATACACTTTTTCTGTG--G--------GATAG--ACATAAATTGCAAACAGAGATCATTATT---------TTATAG-G-GG-TGACTTTTTTACAGGAG--------------------G-G-G-TCA--T---TTATTT--ACGCGAAGTGTGTCG-TTATTTTTAAAGAAATTTGTGACC--G-----GGGTGA--TTTTCA--AACG--T-CAACTA---A---TGACTG-T-GGA-CATTTTATGacgggaaataaagatcgggggtaatatctgaggtgggagtgg
gi|7 : CAAGTGGGTAAAGCTCCAC-AGCAAGTAC-AAT------TGGAGATCAGCTATAAAGGAGCTGATTGCTTTGCATTATATTTCTGTAATCGGCGACAAAGTGATAAGT-ATTCTAGTATGCTACAAAATGCTTAGTAT-G-AAGC-G----AAATGTA-----ATTTCGT-AACTTTTAATAATGGTGATTTG-ACGA-CA------TTATGATACATGGGCATTATCAGCTT-CATGTCTAACGTGAATTCAGATT--AGTT----GTTCATTCGGAACATTCAAATTTTGATCCCCATCGCCAACCAAAATCAAATATTTTCCTAAATAC---------CACCTGTGATTTTATTGGC-ATT-------T--CACGCCGTTGTTT-ATTACCAGTATCGTATTAAGT-CGGCC----AAT---CT------TTCA-CAG----GCT-----------------TTT-CAGTTTA-CCGTAAACGACCGACATCTGC--TACAACAAACAACTAGT-----------------------TAG---GATCAACACAA--GACAA---TATAATATATGTAGTACTATAT--C---CCT-TC----T-TCA------TAGTGTA-AGGC---A-----CCGGTGGACGACTCCCAGG----------------AAGT-ACTATAGGATAAAATA-acgtgaa
gi|8 : GGTGTACCAAACCTCACTTTTACCCTCCTCTTAAAATCAAACATTGCCACAT----------AATCTCTTAAAAACCAC---TGCCCACCATATATAAG-GCTC-GAGTTCTCACATAACGAACGC--AATATTT-CTGCCAAGAAGCTATCACGCAGTCAAGAAGCTATCACGCAGTCAAGAAGCTATCACGCAGGTTTA-CAATATGTCCCTG-TTTTAT---CTAT-TTGCCCTCTCGTACCTGC-AACAATTCCCGGAGAACCA-AGGCTTTCCAATCACAAATACAAGCT------AAAGTCGTCATATTTATA-------------ACTAATTCCTCCTCTTCGAATACATG---TTTTATGACTACCTAACAAT--------------------CAGACGGAC-GAATTAACTTAAAA-CAATAGCCATCTTCTAGA--A---ATCGGGATAG--ATATGAATTGCGAATATGGGTCATTATT---------TTATAG-G-GG-TCACTTTTCC--------------------------------------------------ACGCGTAGAATTTCG-TTA---------------GTAACCG-G-----GGGTCA--T-------AAT----------A---A---TGACCA-T-GGATCACTTTCTtatag
gi|9 : TTTT------------AAAACTA-TAT---GATCAGCATGA--GTCAA---TATAATAAATATAGAACTACCTGGC---ACA-TCCTGTT-TTA------CA-CATATAGAG---T-----TTA--GCAC----CGCTGCAA------A-------AAATTCCTGGAAGGCTCAATA---T-G-TACTAT-AGGGTCCTTG-TACA---------GGGTTAACCCGAATCCAGAACTTCTGGAT-ATTGAGCCCATCAACATAAATACTAGA-CAGAAATCTACAGATCCG-T-G----------------------A-TTTTCGTCTAATGGA--AGTGCAATCAC-CCGTGTTA-GTATTTAGTGACATAACAATTATAGTGTCTCTGTGACAAAGTGGTTAAGATTTCTCT--------------TCACTATCCTATTACTATATGGTACTAAAATAGAACCATCGATTCAAAACTATA-CGAAC-TTCGAAA-AGGTAATGATCTGACACAGATC-GGCTG---------ATTCTAACAG----G------------AGAAGCTTACG-GGAGTC---TCCTC---AACAGAAGTAAACAAATATGAAACCAACCAG-AAACTT-TAACACACAGGctgaggatttaatgaccagggatcaatttgt
Alignments
lowQualScore : 1 222222 1 11 11 11 6666666666666666666666666666666666666 222 1 2222 66666666666666 1 2222 1 1 5555555555 11 8888888888888888888888 11111 1 333 222222 22222 666666666666666666666 2222 3333333333333 3333333333 1 1111 111 22222222222 1111 111 111111 111 222222222222 1111111111111111 444444444444444444444444444 44444444444444444 2222222 2222 11 333 222222 6666666666666666666666666666 11111 111 1 4444444444 33333333333333 111 11 1 1 11111111 1111 11 111 11 11 111 111111 222222 1 3333333333 111 1111 333 111 4444444444444444444 3333333333333333333 55555555555555 22222222222 11111111111 555555555555555555555555555555555555555 555555555555555555555555555555555555555555555
lowQualScore : 1 2 1 0 8 3 1 888888 0 11 333 4 4 00 0 0 99999 0 66 5 8 8 4444444444444444444444444444444444444 333 0 7 3 8888 0 1 99999999999999 7 2 3 3333 6 0 0 0 2222222222 0 1 33 8888888888888888888888 55555 0 1 33 111 555555 7 55555 2 1 000000000000000000000 5 1 99 3333 22 3 1 6666666666666 1 1 55 5 3333333333 1 1 111 6 4444 111 33333333333 4444 999 2 1 333333 6 777 6 1 3 555 44 1 999999999999 55 9999 0 66 888 0 6666666666666666 5 333333333333333333333333333 88 1 77777777777777777 6 1 7 6666666 3 1111 2 1 33 0 777 7 7 6 777777 0000000000000000000000000000 1 99999 333 0 1 5 1 1 22 1 7777777777 3 0 88888888888888 0 3 2 111 44 0 0 1 1 8 55555555 3 0 33 6 4 5 666 9999 11 222 4 1 6 1 0 3 6 00 1 6 1 3 3 44 11 3 99 0 1 111 5 5 555 888 777777 5 77 0 000000 1 1 0 3 1 0 1 5555555555 1 111 4444 3 1 3 3 1 6 666 3 1 222 6 6 4444444444444444444 8888888888888888888 3 5 5 888 5 5 3 99999 44 0 4 1 1 777 44444444444444 4 1 0 4 1 22222222222 55 1 11 55555555555 7 3 3 555555555555555555555555555555555555555 55 1 3 555555555555555555555555555555555555555555555 0 888 1
lowQualScore : . . . . . . . ...... . .. ... . . .. . . ..... . .. . . . ..................................... ... . . . .... . . .............. . . . .... . . . . .......... . . .. ...................... ..... . . .. ... ...... . ..... . . ..................... . . .. .... .. . . ............. . . .. . .......... . . ... . .... ... ........... .... ... . . ...... . ... . . . ... .. . ............ .. .... . .. ... . ................ . ........................... .. . ................. . . . ....... . .... . . .. . ... . . . ...... ............................ . ..... ... . . . . . .. . .......... . . .............. . . . ... .. . . . . . ........ . . .. . . . ... .... .. ... . . . . . . . .. . . . . . .. .. . .. . . ... . . ... ... ...... . .. . ...... . . . . . . . .......... . ... .... . . . . . . ... . . ... . . ................... ................... . . . ... . . . ..... .. . . . . ... .............. . . . . . ........... .. . .. ........... . . . ....................................... .. . . ............................................. . ... .
lowQualScore : 0 0 0 7 8 2 2 888888 8 00 000 2 2 22 2 8 44444 8 44 6 0 0 1111111111111111111111111111111111111 333 7 3 3 3333 7 0 00000000000000 3 0 7 3333 7 2 0 8 8888888888 2 0 88 8888888888888888888888 88888 0 0 22 555 222222 0 00000 5 2 222222222222222222222 2 0 22 3333 00 7 0 8888888888888 0 4 88 0 2222222222 4 0 333 7 2222 777 00000000000 2222 333 5 0 333333 7 555 7 7 7 333 77 0 333333333333 44 0000 4 99 888 3 0000000000000000 7 666666666666666666666666666 77 7 22222222222222222 7 7 8 2222222 2 1111 5 0 88 8 000 3 3 7 000000 0000000000000000000000000000 0 33333 777 7 0 5 0 0 00 0 3333333333 7 7 00000000000000 7 2 5 000 22 0 0 0 2 8 00000000 0 2 55 5 5 6 000 8888 22 444 0 4 7 0 8 7 7 22 0 7 0 8 2 00 00 2 22 7 5 777 0 0 666 888 000000 7 99 7 777777 4 4 7 0 7 4 0 0000000000 4 888 8888 2 0 7 5 0 7 000 3 0 777 7 7 3333333333333333333 8888888888888888888 6 0 1 888 7 7 6 66666 66 9 1 0 0 888 11111111111111 0 6 9 0 0 11111111111 00 0 11 00000000000 3 6 6 999999999999999999999999999999999999999 00 2 6 222222222222222222222222222222222222222222222 4 666 0
consensus : NNNNNNNNNNNNNNNNTCACATGTGCGGTAGCACTATGTGAGGTGTATTCAATTACTATTCGTAAATTTCACCAAGTATAGCTCATATTACGCATGACTATTCAGTAATGCTCTGTTGCCCTTTAAGTANAATATAGCGACTGGTTGATTTGCTNATCGATTGATTATTTTAAAAGTTCATAACCTACATTTTAATT------GTANCA-NCACATTTTAACCAAGTATTTCCTGAGCGCCGCACGGTAAGCTCCAATATGGACGAAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGTATTTGTCTTGTGCTTGGATGTC-TGCGTGTTGTTTCCTGTTGGTTTCACATTTGTTTACTTTTTATCTTCCATCAAAGTATAC-CCCCTT-TGGAC------------GTTGATTAAATGATTTCA-C-GTA-CTTTTA---ATTTTCGGGTGTCCACAAATGATATTGT-ATT----CAATGAAATTGTTCGTTGTATAGTCGAGCGTANTGTCCC-----G------CTCTTGTATTACCGTATTCTCAATGCGCATCT-TTTCATTTCATTGTACAGGTGGGAAAAGCTCCAC-GGCGNGTAC-ATT------TGGAGATCAGCTATAAAGGAGCTGACCGCNTTGCGT--TAT----------------------ATA--T-NTT-TAGTNTGCTACAAAGTGCTTAGTAT-GCAATC-G----AAAGATA-----ATTTCATGAACTTTAAATAATGGTGATTTG-A-GA-CA------T------ACATGGGCATTATCAGCTTTCATGNCTAGCGTGAATTCAGATT--AGTT----GTTCATGCGGGGCAGCCAGATTTTGATCCCCATTGCCAACCGNAATTCAATGTCTTCCTGAATAC---------CACCTGTGAGTGCGTTGATGATT-------T--TACGCCGTCGTTTAATTGCCAGTATCATATNACGG-CGGTC----AAT---CT------TTCG-TAG----GCTC--TACCAGTGCTGA--TCT-CAGTTTA-CTGTAAACGACCGACATCTACAATACCACATGCAACTAGTTTT------------AAAAATA-TAG---GATCAGCACGA--GACAA---CATAATATATGTAGTACTACAT--C---ACT-TC----T-TCA------TA-TGTA-AGGA---T-----CCAATGCACGACTCCCTGGAA------A-------AAGT-ACTATAGGGTAAAACA-A-T-G-GACTTTCAAAATTCTCGGTATA-ATCGTGACNGG--AAATCGAACCCAGG-CCTCTGGATTATGGATTCCATTAACATAAATACTAGA-CA-AAATCTACAGATCCG-T-GGAAGTCAAA--A--AATCC-AGA-TTTTNCTCCAA--GACCAGTGCAATCAAACCGTATNAAGTATTTAGTGGCATAACAGTTANAGNGCCTCTGTGACGGAGTGGTNNAGATNTCTCTCTG-------CCAGTCGCTATCTCATCGCTATATGGT----AAATAGAATCGTCGATTCAAAACTA-A-CAAAC-GTTG-AA-AGGCAAANATCTAACACAGATC-CG-TGAGAAGTAAAATTCTGCCAGTACCGGTANCCGTCCATAGNAGCCT-CGTGGAGTCC-TTCCTCCAAAATAAAAGTTAA-AAATANGAAACCAACAGG-AAACAT-TAACACA-AGGCCCTGGGCACAAAACACAGACATCCACACACA--AGACA--CAATCACAAGCAAACAATA---TATA-AC-CAGAGTAAAAAGACACCACAAACATTA---AATAAGCTGGCCGGA-----GGGGT-CAG--TTGCCAAACGGCAACAGGGG-----ATTTGAAACCTTGTTTAAGGTGCACCAAACCTCACTTTTACCCTCCTCTTAAAATCAGAAATTGCCATAT----------AATCTCTTTATAA--AC---TGCACACTGTACATANG-GCTC-G-GCTCTCACATANCGAACAC--TTT-TTT-CTG-------------------TCAAGAAGCTATCACG-------------------CAGGTTTA-CAATATGTCCGTGTTTTTAT---CCGG-GTGCCCTCTCGTACCTGCAAACAATTCCCGGAGAACCA-TGGCTCTTCCATCACAAATACAAGCT--G--AAAAGTCGTCATATTTGTAACACGAGAGTCTNACCAATTCTTCCTCTNANAAGACATG---TTTTATGACTACTAGACAATC-GG--C--G-----ACGAACAGACGGAC-GACCTAACTTAAAA-CAATANACATCTTCTATG--ATGTGTC--GATAG--ACATGAATTGCGAATAGGGGTCATTATT---------TTATAG-G-GG-TCACTTTTTCACAGGA---------------------G-G-G-TCA--C---T--TTT--ACGCGTAGGGTGTCG-TTATTTTTACAGCAATTTGTGACCGTG-----GGGTCA--TTT--A--AACG--T-GA---A---A---TGACCG-G-GGGTCANTTTCTG
Reference ( family-816 ) : NNNNNNNNNNNNNNNNTCACATGTGCGGTAGCACTATGTGAGGTGTATTCAATTACTATTCGTAAATTTCACCAAGTATAGCTCATATTACGCATGACTATTCAGTAATGCTCTGTTGCCCTTTAAGTANAATATAGCGACTGGTTGATTTGCTNATCGATTGATTATTTTAAAAGTTCATAACCTACATTTTAATT------GTANCA-NCACATTTTAACCAAGTATTTCCTGAGCGCCGCACGGTAAGCTCCAATATGGACGAAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGTATTTGTCTTGTGCTTGGATGTC-TGCGTGTTGTTTCCTGTTGGTTTCACATTTGTTTACTTTTTATCTTCCATCAAAGTATAC-CCCCTT-TGGAC------------GTTGATTAAATGATTTCA-C-GTA-CTTTTA---ATTTTCGGGTGTCCACAAATGATATTGT-ATT----CAATGAAATTGTTCGTTGTATAGTCGAGCGTANTGTCCC-----G------CTCTTGTATTACCGTATTCTCAATGCGCATCT-TTTCATTTCATTGTACAGGTGGGAAAAGCTCCAC-GGCGNGTAC-ATT------TGGAGATCAGCTATAAAGGAGCTGACCGCNTTGCGT--TAT----------------------ATA--T-NTT-TAGTNTGCTACAAAGTGCTTAGTAT-GCAATC-G----AAAGATA-----ATTTCATGAACTTTAAATAATGGTGATTTG-A-GA-CA------T------ACATGGGCATTATCAGCTTTCATGNCTAGCGTGAATTCAGATT--AGTT----GTTCATGCGGGGCAGCCAGATTTTGATCCCCATTGCCAACCGNAATTCAATGTCTTCCTGAATAC---------CACCTGTGAGTGCGTTGATGATT-------T--TACGCCGTCGTTTAATTGCCAGTATCATATNACGG-CGGTC----AAT---CT------TTCG-TAG----GCTC--TACCAGTGCTGA--TCT-CAGTTTA-CTGTAAACGACCGACATCTACAATACCACATGCAACTAGTTTT------------AAAAATA-TAG---GATCAGCACGA--GACAA---CATAATATATGTAGTACTACAT--C---ACT-TC----T-TCA------TA-TGTA-AGGA---T-----CCAATGCACGACTCCCTGGAA------A-------AAGT-ACTATAGGGTAAAACA-A-T-G-GACTTTCAAAATTCTCGGTATA-ATCGTGACNGG--AAATCGAACCCAGG-CCTCTGGATTATGGATTCCATTAACATAAATACTAGA-CA-AAATCTACAGATCCG-T-GGAAGTCAAA--A--AATCC-AGA-TTTTNCTCCAA--GACCAGTGCAATCAAACCGTATNAAGTATTTAGTGGCATAACAGTTANAGNGCCTCTGTGACGGAGTGGTNNAGATNTCTCTCTG-------CCAGTCGCTATCTCATCGCTATATGGT----AAATAGAATCGTCGATTCAAAACTA-A-CAAAC-GTTG-AA-AGGCAAANATCTAACACAGATC-CG-TGAGAAGTAAAATTCTGCCAGTACCGGTANCCGTCCATAGNAGCCT-CGTGGAGTCC-TTCCTCCAAAATAAAAGTTAA-AAATANGAAACCAACAGG-AAACAT-TAACACA-AGGCCCTGGGCACAAAACACAGACATCCACACACA--AGACA--CAATCACAAGCAAACAATA---TATA-AC-CAGAGTAAAAAGACACCACAAACATTA---AATAAGCTGGCCGGA-----GGGGT-CAG--TTGCCAAACGGCAACAGGGG-----ATTTGAAACCTTGTTTAAGGTGCACCAAACCTCACTTTTACCCTCCTCTTAAAATCAGAAATTGCCATAT----------AATCTCTTTATAA--AC---TGCACACTGTACATANG-GCTC-G-GCTCTCACATANCGAACAC--TTT-TTT-CTG-------------------TCAAGAAGCTATCACG-------------------CAGGTTTA-CAATATGTCCGTGTTTTTAT---CCGG-GTGCCCTCTCGTACCTGCAAACAATTCCCGGAGAACCA-TGGCTCTTCCATCACAAATACAAGCT--G--AAAAGTCGTCATATTTGTAACACGAGAGTCTNACCAATTCTTCCTCTNANAAGACATG---TTTTATGACTACTAGACAATC-GG--C--G-----ACGAACAGACGGAC-GACCTAACTTAAAA-CAATANACATCTTCTATG--ATGTGTC--GATAG--ACATGAATTGCGAATAGGGGTCATTATT---------TTATAG-G-GG-TCACTTTTTCACAGGA---------------------G-G-G-TCA--C---T--TTT--ACGCGTAGGGTGTCG-TTATTTTTACAGCAATTTGTGACCGTG-----GGGTCA--TTT--A--AACG--T-GA---A---A---TGACCG-G-GGGTCANTTTCTG
gi|1 : TCACATGTGTGGTAGCATTATGTGAGGTGTATTCAACTACTATTTGTAAATTTCACCAAGTATAGCTCATATTACACATGAGTATTCAGTAAAGCTCTGTTGCCCTTTAAGTAGAATATAGCGA--------TTTGCTGATCGTTTGATTATTTTAAAAGTT-ATAACCTATATCTTAATT------GTATCA-GCACAGTTTAACTAGGTATTTCATGAACGCCACACGATAAGCTTCAATATGGACACAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGTATTTGTCTTGTGCTTGGATGTC-TGCATGTTGTTTCCTGTTGGTTTCACATTTGTTTACTTTTTATCTTCCATCAAAGTATGC-CCCCTT-TG-AC------------GTTAATTAAATGATTTCA-CCGTAACTTTTA---ATTTTCAAGTGTCCACAAATGATATTGT-ATT----CAATGAAAATGTTTGTTGTATAGTCAAGTATTTTGTCCC-----G-------TCT-GTATCATCATAATCTCAATGTGCA-------CATTTCATTGTACAGGTGGGAAAAGCTCCAT-GGCATATACTATTGGAGAATGGAGATCAGCTATAGAGGAGCTGACCACATTGTGT--TAT----------------------ATA--T-TTT-TAATGTACCATAAAGTGCTTAGTATTGTAGTCTGCTACAAAG-TATTAGTATTTTATGAACGTTAATTAATCATGATTTG-A-----A------T------ACATAGGCATAATCAACTTTCATGAATGACATGAATTCAGATT--AGTT----GTTCATGCGGTGCAGCCAGATTTTGATTGCCATTGCCAATAGTAATTCAATGTCTTTCTGAAT------------------GAGTGCATTGAGGATT-------A--TATATCATTTTATAATAATTAGTATCATATTAAGGGCGGTC----AAT---CT------TTTG-TAG----GCTC--TACGAGTGTTGA--TCT-CAATTTA-CTGAAAACAGCTGACATCTACAATACAACGTGTAAATAGTTTT------------AAAAATA-TAG---GATCAGCACAA--GACAA---CATAATACTTGTAGTATTACAT--C---ACT-TC----T-TCA------TACTGTA-AAGA---T-----TCAAAGCACAACTCCCTT---------A-------AAGT-GCTATGGGGTAAAACAGA-T-G-GACTTTCAAAATTCTCTGTATACATCGTGACTGG--AAATTGAACCCAGG-----TGAATTATGGATTC-ATTAACACAAATATCA----A-AAATCTACAGATCTG-TAGGAAGTCAAA--AGTAATCCCAGA-TTTTACTCCAA--GACCAGTGCAATGAAACCATAAAAAGTATTTAGTGGTATAACAGTTAGAGGGCCTCTGTGACGGAGTAGTATAGATATCTCTCTGTCAGCTGCCAGTCACTGTCTCATCGTTATAAGAT----AAATAGAATCATCAACTCAGAACTA-A-CAAAC-GTTG-AA-AGGCAAAGATCTTACACAGATC-CG-TAAAAAGTCAAATTCTGTTAGTACCAATAGCCGTCTATAGTAGCCT-TGTGGAGTCC-TTCCTCCAAAATAAAAATTAA-AAATACGAAACCAACAGG-AATCAT-TAACACC-AAGCCCTGGGCATAAAACACAGACATTCGCACACA--AGACA--CAATTACAAGCAAACAACA---TATA-AT-CAGAGTAAAAAGAAACCACAAACATTA---AATTAGCTGGTCAGA-----GGGGT-CAG--TTGCCAAATGGCATCAGGGG-----ATTTGAAACCTTTTTTAAGGT-TACCAAACCCCACTTTTACTCTCCACTTAAAATCAGAAATTGCCATAG----------AATGTCTTTATAA--AC---TGGACACTGTACATATG-GCTC---GCTCTCACATATCAAACAC--TTT-TTG-CTT-------------------TAAAGAAGTTATCGCA-------------------CAGG-TCA-CAATATGTATGTGTTTTTAT---CAGG-GTGCCCTCTCTTACCTGCAAATAATTCCCAGAGAACCA-TGACTCTTCCATCAAAAATACAAGCT--G--AAAAGTCATCATATTTGTAACAT--GAGTCTTACCAATTCTTCCTCTTACAAGACATG---TTTTATAACTGTCAGACAATC-AG---------------ACAGACGGAC-GACTTAA-TTAAAA-CAATATACATTTTCTCTG--ATGTGTT--AATAGAAACATGAATTGCAAATAGGGGTCATTATT---------TCATAGTG-GG-TCATTTTTTCACAGCA---------------------GCG-T-TTA--C---T--TTT--ACTTATAGGGTGTCA-TTATATTTACAGCAATTTGTGACCATG-----GGGTCA--TTT--A--A-----TAAA---A---A---TGACTG-GCAGATCAGTTTCTG
gi|10 : ctgtctgtcacatattACACTGTGT-TAAGAGCTCTA-GTGTTCACAGAGCAAATAC--TTT-TTT-TTG-------------------TTCGGAAGCTATCACT-------------------CTGGTTTA-CAATATGTCCGCGTGTTCATCAACCGG-ATGTACTCTCACACATTTAAACGGTTCCCGG-GAAGCACTGGCTTTTCCTTTCCAAAAACAATGT--GAAAAAAATCGTCTTATTTGTAACACG-----------AATTCTTCCTCTGATAAGACATG---ATTTATGACTACTAAACAATCGGG--CG-G-----ACGAACAAAAGAGC-GA-TGAACGTAAAAGCAATGCACATCTTC-----------TC---------ACATAAAAT----ATAGGG---------------------------GG-TCACTTTTTTACAGGA-------------------------G-TCA--T---T--TTT--ATGC-TAATGTGTCG-CTAATTTCACAGCCATTGATGGCC--A-----GTGTCT--TTT--AGTGATG--T-GAAGTA---A---TGACGG-G-TGGTCAt
gi|11 : CCATCCATAAAAGTCT-TGTGGGGGCCATTCCTCTAGAATAAGAATTGA-AAACAAGAAACCAATAGG-AAACAT-TAACACG-AGGCAATGGGCACGAAACACAAATATCCACACACA--AGGCA--CAATCACAAGCAAACAATA---TATA-AC-T-GAGTAAAAAGACACCACACTCATTA---AATAAGCTGGCCAGA------GGGT-CAG--TTGCCAAA-------------------TTACCACC-------AGGTGCACTAAACCTAACTTCTACCGGCCTCTTAAAATTAGAAATTGCCATAC----------AGTCTCTTTTTAA--AC-------CACTATACAT-TG-GCTT-GAACTCTCACATATCCAATAC---TT-TTT-CTG-------------------TCTAGAAGCTATCACA-------------------CAGGCTTA-CAATTTTTCCGTGCCTTTAaatagtgtta
gi|12 : aGCATTATAATATTTTATGCCCAGCGCGAATTAAGATT--AGTTTT--GTAAATGCGGGTCAGCCTGACTTTGATCCCCATTGCCAACCGAAATTCAATGGCTTCCTTAATACTATGACTTCCACTTGTGCGGGTGTTGATTATTACGTAATT--TATACAATCATGTAACTACCAGTTTTATATATCTG-CGGTCTTCCAAG---CT------CAAGCTTG----GTTCCATACCAGTGCTGA--TCT-CAGTATA-CTGTAAACGAAGGACATCTACAATATCACATGCAACTAGTTTT------------AAGAATA-TAG---TCACAGCACGA--GACAA---GATTATATATGTAATACTACAT--C----CTGTT----TGTCG------TA---TA-AGGAGTGT-----ACA--GCACGACTCCCa
gi|13 : atCGTTATTA---TTCATGGCAAGTGTGAATGTAATTC--AGTT----GGTCATAC------------TTTCGATCTCTAATGTCACCCACAATTCAATGTATTCCTGAATAC---------AACCTGTGGGTGGGT--ATGGTT-------TGTTACACCGTCATTTAATAGTCAGTTCCATATTACGG-CCGTC----AAT---AC------GTAA-TAG----GCTC--TACCAGTA----------------------AAATG-CC-ACATGTA----ACCA----------GTTTT------------TAAAACA--AA---AA-CAAAACAATTCACAACAACAAAATATATGTAGTACT-CCC--C---ATT-TT----T-ACA------T--TGTG-TGTA---TCA---CCAATACACATTTTCCTGGAA------AGCCCAACAAGT-ACTATAAGGTTAAACA-A-TAG-GAC
gi|14 : TCACATGTGCGGTAGCACTATGTAAGGTGTATTGAATTATTTTTCGTAAATTTCACCAAATAAAGCTTTAATTACGCATGACTATTCAGTAATGCTCTGTTACCATTACAGTTAAACATAGTAATTGGTTGATTGGCTCACTGATTGATTATTTTAAAAGTTAA-AGACTACATTTAAATT------GTA-CATCCACATTTTAATCAAATATTTCCTGAGCGCCACATGG-AAGCTTCAATATTGACGAAGTGGAAGACTTTGGTTTTATACTGTGGTTTGCTTATAAATGTTTTCTACTTGGA---------TGTTGTTT------------ACATTTG-----------TCTTCCATCAAAGTATAC-CCCTTT-TGGAC------------GTTcggaaattggatccagttctacggaaa
gi|15 : gCTATCACG-------------------TATGTTTA-CACTATGTTCATGTTTTTA----CCGGTGTGCCCTTTCGTACCTGCAAACAATTCCCGGAGAACGA-AGGTACTTCAATCACAAATGCAAGCT--G--AAAAGCCGAACTATTTGTAACACGAGAGTCCAACAAATTCTTTCTCTTAGAGTACATG---TTTTATAAATACTAAACAGTC-AGATG--G-----ACGAAAAGACGGAC-GACCTAACATTAAA-CAATATATATCTTCTATG--ATGT-TC--GATAG--ACATGCATTGCGAGTAGAGGGGA-TGTT---------C----G-G-GG-GCATTTTCTAACGGGAAATTATGACAG----------G-G-G-TCA--A---T--TT------CTGAGGGTGTCG-AAATTTtttaggttaa
gi|16 : GAGAACCA-TGGCTGTTCCTTCGCAAATACAAGCT--G--AAAAGTCGTCATATTTGCAACACAAGAACCTTATTAACTCTTCCTCTGATCAG--ATG---CTTTATGATTACTAGACAATG-AGACT--G-----ACGAACAGACGGAC-GAACTAAC--AA----AGTAGACATATTCCATT--ACGTG-A--GATAG--ACATGAATTGTAAATAGTGGTCACTGTT---------GAATGG-G-GG-TCACATTTTCACAGGAAAAAAAAAATTTTCGCAGGAGG-G-A-TCACTC---T--TTT--ACGCGTAGGGTGTCG-TTATTTTTA---CAATTTGTGACCGccgtt
gi|17 : ATA-AAG---GATCACCACGA--GACAA---CATATCAGATGTAGTACTACAT--TCGTACT-T-----T-TCAGATAATTAGTGTATAATA---TTATCACCAATGCACGACTTCCTGGAATTCTCAAC------AAGT-ATCATAATGTAAAACA-AAT-ACGATTTTCGAAATTCCCGGTAT----CGTGACGGG--AAATCGAACCCAGGTCCTCTGGATTGTGG-TTTCATTAACCTAAACACTAAACCA-AAATCAACAGGTCCGTT-GGAAATCAAAATA--AATCC-AAAGTTCTTCACCAA--CGCCAGTGCAACC-AACCATAT
gi|18 : -AAATAAAAAA--AATA---AAACAT--AACCCA-AGGCCCTGTGC-CAAAACAGATACATCTACACACA--AGACA--CAATCACAAGCGAACAATAATATATG-AC-CAGCGTAATAAGACACCATAAACATTATTAAGTATGCCGGTCGGA-----GGGGT-CAG--TTGTCAAACGGTAACAGGGG-----ATTTGAAACCTTGTTTAAGGTACACCATACCTCACTTTTTCC
gi|18 : TTTT-T---CCGG-ATGCCCTCTCGTACTTGCAAACggatgccctctcgtacttgcaaaccaagtcttcctttcaga
gi|19 : aaataaaaaaaataaaacataacccaaggccctgtgccaaaacagatacatctacacacaagacacaatcacaagcgaacaataatatatgaccagcgtaataagacaccataaacattattaagtatgccggtcggaggggtcagttgtcaaacggtaacaggggatttgaaaccttgtttaaggtacaccatacctcacGATCATTTCAAAAGTTCATAACCTACATTTCAATTTCAATTGTAACA-ACACATTTTAACCAAGTATTTCCTGAA--------GGT---CTCCAATATGGACGAAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGAATTTGTCTTGTGCTTGGATGTC-TGCGTGTTGTTTCCTGTTGGTTTCACATTTGTTTAC-TTTTATTTTCAATCAACATATAC-GCCCTT-TAGA--------------TT-----AATGTTTTTA-T-GTcaagtcttcctttcaga
gi|2 : AGGAGGACTCTGGTTATATAATGTAGTTTACTTGTATT------GTGCTTGGATGGC-TGCGTGTTGTTTCCTGTTGGTTTCACAAACGTTTACTTTT-ATTTTCCATTAAAGTATACGTCCTTT-TGGAC---------------------------TTA-C-GT----TTTATAGGTTTTCAGGTGTTCATAAATGATATTGTCATTGTTTCAATGAAATTGTTCGCTGTATATTCGAGCATACTGTCCT-----GAGATAACTCTTGTATTACCGTTTTCTCAATGAACATCT-TTTTCTTTCATTGTACAGGTCGAAAAAGCTGCACAGGTG-GTAC---------------------TATAAAAGAGCTGACCGCATTGCGT--TGT----------------------ATT--T-GTT-TTGTCGGCTACAAAGTGCTTAGTAT--CAATC-A----AAAGATA-----ATTTCATGAACTTTGAATAATGGTGATTTG-A-AAACAGTATAAT------ACATGGGCATTATCAGCTTTCATGACTAGTGTGAATACAGATT--AGTT----GTTAATGTGGGGCAGACAGATTGTGATCCCACTTGCCAACCGGAAGTCAATGTCTTCCTGAATCT---------CTCCCGTGAGAGCGTT-ATGATC-------T--TACGTCGTT-TTTAATTGTCAGTATCATATCCCGG-CGAAC----AAT---CT------TTTG-TAG----ACTT--TACGAATGTTGA--CCTCCAGTTTA-CTATAAACGACGGACATCTAC--TACCACATGTAATTAGTTTTAAAAATAAAGTAAAAAATA-TAGTATCATCAGAACGA--GACAA---CATTATATATGTAGTACCACAT--C---CCG-TC----T-TCA------TACTGTA-AAGC---A-----CAAATGCACGACTCCCTGGAA------A-------TAGT-AC---AGCGT--AAC---------ATTTTTATGATTCGCGGTATA-ta
gi|20 : ACATCTTCTATG--GTGAGT---GAGAG--ACATGACTGGCAAATAAGGGTCATTATTAGAAATAAGTTATAA-GAGG-TAATTATTTCACAGAA---------------------G-GTG-TCA--T---T--TTTTTACGCGTAGTGTTTCG-TTATTTTTACAGCCATTTGTG-CCAT---------T----TTC--T--GACG--T-GA---GATTA---TGACCGAG-GAGTCGATTTCT
gi|21 : aCTG-------CCAATCGCTATCTCACCA----AT---------ATAGAATCGTCGATTTAA----A-A-CAAAC-ATTG-AATATGCCAATATCTAA-ACAGATC-CA--GAGAAGTAAAAGACTGCTTCTACCGGTATCTG-CCATAACAGCCaaggaggtatataaaaattacgtaacatc
gi|21 : C-TTCCTCCAAAATATAAGTTAA-ACATAAGaaatgagtatctgtgggatttaaacctttttaatcctactaggagaggcttcctccaaaatataagttaaacataag
gi|22 : ctgccaatcgctatctcaccaatatagaatcgtcgatttaaaacaaacattgaatatgccaatatctaaacagatccagagaagtaaaagactgcttctaccggtatctgccataacagccaaatgagtatctgtgggatttaaacctttttaatcctactaggagaggTTATAATTCCAAACTTAA--AAAAAACATCATATTTATAACACGCGAGATTCACCCATT-TTCCTCTAATATGACATG---TTTTACGACTACTGGACAACCGGG--C--GGATAAACAAACTGACGGCCTGGCCTATCTTAAAA-CAATACACCTCTTCTATA--ATGTGT---GATAG--ACACGAACTGCAAATATGCGTCAT
gi|23 : cTATGACTACTAGACAATC-AG--CCGG-----ACCAACAGACTGAC-GACCTAACTTAAAA-TAAAAGACATTTTCCAAG--ATGTGTA--AA-AG--ACATGAATTGCGAATAGAAGTCATTATT---------TAATAG-G-GG-TCACTTTTTCACAGGA---------------------G-GCG-TCA--CTTTT--TTT--ACGCGTAAGATGTCG-T--TTTTTACAGCAAT
gi|24 : aTAATTGCCAGTATTATATGATTG-GGTTC----GATAGTCTGTATGATTTA-TAACTCAGTTCCATACCACTACTGACCTCT-CA---TAGCTGTAATCAACTGGCATCTTTAATAACACATCAAACTAGTTTT------------AAGAATATTAG---AATCAGCACGA--GATAA---
gi|25 : aTTATT---------TTATAG-G-GGGTCACTTTTTCAGAGGA---------------------G-G-GGTCA--CA--T--TCT--ACGCGAAGAGTATCG-TTATTTATACATCAATGTGGGACCG-G-----GGTTCA--T
gi|26 : TA-AC-CAGAGCAAAAACACACCACAAACATTA---AATAAGCTGGCCGGA-----GGGGT-AAA--CTGCCAAACGGCAACAGGGG-----ATTTGAAACCTTGTTTAAAGgattttgcattgaaatgtc
gi|27 : gGG---------------------G-G-G-TCA--CCT-T--TTT--ACGTGTGGAGTGTCGTTTTTTTTTACGTTAACTTGTGACCG-A-----TGATCA--TTTTCT--AACG--T-GA---A---ATACTGATTG-G-GGc
gi|28 : CA--CACTCACAAGCAAACAGTA---TATACACTC-------AAAGATACATTAAACATTA---AATATGCTGGCCAAA-----TGG
gi|29 : gG-------------------TCAGGAAGCTTTCAAG-------------------C-GGTTTAACAGTATGTCCGTG-TTTTAT---C
gi|3 : TCACATGTGCTATAGCACTATGTGAGGTGTATTCAATTACTATTCGCAAATTTCACCAAGTATAGCTCATGTTACGCATGACTATTCAGTAATGCTCTGTTGCCCTTTACGTACAATATAGCGACTGGTTGATTTGCTAATTGATTTATTATTTTAATAGTTCATTACTTACATTTTAATT------GTACCT-TTTCATTTTAACCAAGTATTTCCTGAGCATCGCATTGCAAGCTCCAATATAGACGAAGAGGATGACTCTGGTTATATAATGTGGTTTGCTTGTATTTGTCTTGTGCTTGGAT-TCATGTGTGTTGTTTCCTTTTGGTTTCACATTTGTTTAC-ATTTATCTTCCCTCTAAGTTTGC-CCCCTTGTGGACTTACCTTTTGGTGTTGATTAAATAATTTCAGT-GTACCTTTTA---ATTTTCGGATGTCCACAAATGA-----T-ATT----CAATGAAATTGTTCGTTGTATAGTCGAGCGTAATGTCCTTGATAG------CTCTTGTATTA-TGTATTCTCAATGCGCATTTGTTTCATTT-ATTGTACACGTGGGACAAGCTCCCC-AGCGGGTAT-TTC------TGGAGATTAGCCGTGAAGAAGCTGACTGCCTTGTGT--TAT----------------------ATA--TATTT-TAATCTG---CAAAGTGCTTAGTAT--CAATC-G----AAAGACA-----ATGTTATGAACTTTAGATAATGATGATATGAA-GA-CA------T------ACATGGGCATTATCAGCTTTCATCACTAGCGTGAATTCAGATTCAAGTTAGTGGTTCATGCGGGGCAGTCAGGTTTTGTTCCCTATTGCCAACCGAAAGTCAATGTt
gi|30 : gtctg-G-GACTTTCAAAATCCTCAGTATA-ATCGTTACCGG--AAGTCGAA
gi|4 : TCAAAAGTA-AACAATCTATTG-AA-AGGCAAATATCTAAGAAAGATAACG-TAAGAAGTAAAATTCCGCCAATACCAGTAACCGTCCAT--------------AATTT-TTTTT------------TTAA-AACTATGAA-CCAACAGG-AATCATAAAATACA-AGGCCCTGGACACAAAATACAGACAT--ATACACA--G----------CACAAGCAAACACTA---AATA-AC-CATCGTAAAAAGACACCACAAACATTA---AATAA
gi|4 : cACAAGCAAACAC-TAA-ATA-A--CCAT---CGTAAAA---AGACA-CCACAAACATTAAATAANNNNNNNNNNACAAACACTA---AATA-AC-CATCGTAAAAAGACACCACAAACACTA---AATAAGCTGGCCGGAGCCTCGGAGT-GAA--ATG-AAAGCGGCAACAGGGGATTTAATTTGAAACCTTGTTTAAGATGCACAAAACCTCACTTTTAnnnnnnnnnnacaaacactaaataaccatcgtaaaaagacaccacaaacactaaataagctggccggagcctcggagtgaaatgaaagcggcaacaggggatttaatttgaaaccttgtttaagatgcacaaaacctcacttttagaatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttccggtgaactatcacaaatacaagctgaaagttgtcatgtttgtaacaggagagtttgaccaatactaactcttagaagacatgtttttttatgattactagaacagacggacgacatgacttaaaaaaatagacatcttctatggtatatgtgatagacatgaattgcaaacgttattttatgggggtcactttttcacaggaggaatctatatataaac
gi|4 : ctcaaaagtaaacaatctattgaaaggcaaatatctaagaaagataacgtaagaagtaaaattccgccaataccagtaaccgtccataattttttttttaaaactatgaaccaacaggaatcataaaatacaaggccctggacacaaaatacagacatatacacagcCTATCACAAATACAAGCT--G--AAA-GTTGTCATGTTTGTAACAGGAGAGTTTGACCAATACTAACTCTTAGAAGACATGTTTTTTTATGATTACTA-----------------------GAACAGACGGAC-GACATGACTTAAAA-AAATAGACATCTTCTATGGTATATGT---GATAG--ACATGAATTGCAAA-------CGTTATT---------TTATGG-G-GG-TCACTTTTTCACAGGA---------------------G-G-gaatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttccggtgaactatcacaaatacaagctgaaagttgtcatgtttgtaacaggagagtttgaccaatactaactcttagaagacatgtttttttatgattactagaacagacggacgacatgacttaaaaaaatagacatcttctatggtatatgtgatagacatgaattgcaaacgttattttatgggggtcactttttcacaggaggaatctatatataaac
gi|5 : ctcaaaagtaaacaatctattgaaaggcaaatatctaagaaagataacgtaagaagtaaaattccgccaataccagtaaccgtccataattttttttttaaaactatgaaccaacaggaatcataaaatacaaggccctggacacaaaatacagacatatacacagcacaagcaaacactaaataaccatcgtaaaaagacaccacaaacattaaataannnnnnnnnnacaaacactaaataaccatcgtaaaaagacaccacaaacactaaataagctggccggagcctcggagtgaaatgaaagcggcaacaggggatttaatttgaaaccttgtttaagatgcacaaaacctcacttttagaatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttccggtgaaATA-AC-CAGAGTAAAAATACACCACAAACATTA---TATAAGCTGGCCGGA-----TGGGT-CAA--TTGCCAGACGGCAACAGGC------ATTTGA---------------------AACTTCAC------------CTTAAAATAAGAAATTGCCATAT----------AACCTTTTTATA----C---TGTACA----ACAAAAG-GCTC-------TCA----ACGAGCAC--TTT-TTTTCTG-------------------TCAAGAGACTGTCACG-------------------TACGTTTA------TGTCCGTGTTTT-AT---CTGG-GT-CCCTCTCGCACCTGCAAACAATTCCCGAAGAACTA-TGGCTCTTCCATCACAAATACAAGCT--G--AAAAGTCGTTATATTTGTAACATGAGAGTCTAACCAAGTCTTCCTGTAAGAAGACATG---TTTTATGACTACTAGACAACCAGA--CG-G-----GCGAACATACGGAC-GGTCTAACTTATAA-CAATATACATCTTCTATG--ATGTG-C--GATAG--ACACGAGTTGCGAATAGG---CGTTA-----------TTATAGTG-GG-TCACTTTTTCACAGGA---------------------G-G-G-T--------------------GTGAGGTGTCG-TTATTTTTACAGCAATTTGTGACCGTGAGCCCGGGTCATTTTT--A--AACGTCT-AAT--A---A---TTACCG-G-GGGTCATATTCTGaatctatatataaac
gi|6 : GCCGGA-----AGGGTACCGCTTTGC--AACGGCAACCTTGGT----ATTTAAAACCTTGTTTAAGGAGCACTTAACCTTACTTTAACCC-CTTCTTAGTACCAGAAATTGTGATATCTTTTTCACCAACATTTTCTTAA--ACCATTGCACATTCTACTTAGT-ATTCAG-GCTCTTACAAAATGAATACCTTTT-TTT-CTG-------------------CCATGAAGCTATCACA-------------------CTGGTTTA-CAACGTGTCCGTGTTTTTAT---CCGG-GTGTCCCCTCATACCTGCAAACAATTCCTGCAGATCAA-TTGCTCTTCC-TCATAAATACAAGCT--G--AAATGTCGTCATACTTGTAAGACGAAAATCTAATCAATTTATCCTCTGATAAAACATA---TTTTGTGACTA-TCGACGATC-GGA-CG-G-----ACGAACAGACGGAC-GACCTAACTTGAAG-CAATACACTTTTTCTGTG--G--------GATAG--ACATAAATTGCAAACAGAGATCATTATT---------TTATAG-G-GG-TGACTTTTTTACAGGAG--------------------G-G-G-TCA--T---TTATTT--ACGCGAAGTGTGTCG-TTATTTTTAAAGAAATTTGTGACC--G-----GGGTGA--TTTTCA--AACG--T-CAACTA---A---TGACTG-T-GGA-CATTTTATGacgggaaataaagatcgggggtaatatctgaggtgggagtgg
gi|7 : CAAGTGGGTAAAGCTCCAC-AGCAAGTAC-AAT------TGGAGATCAGCTATAAAGGAGCTGATTGCTTTGCATTATATTTCTGTAATCGGCGACAAAGTGATAAGT-ATTCTAGTATGCTACAAAATGCTTAGTAT-G-AAGC-G----AAATGTA-----ATTTCGT-AACTTTTAATAATGGTGATTTG-ACGA-CA------TTATGATACATGGGCATTATCAGCTT-CATGTCTAACGTGAATTCAGATT--AGTT----GTTCATTCGGAACATTCAAATTTTGATCCCCATCGCCAACCAAAATCAAATATTTTCCTAAATAC---------CACCTGTGATTTTATTGGC-ATT-------T--CACGCCGTTGTTT-ATTACCAGTATCGTATTAAGT-CGGCC----AAT---CT------TTCA-CAG----GCT-----------------TTT-CAGTTTA-CCGTAAACGACCGACATCTGC--TACAACAAACAACTAGT-----------------------TAG---GATCAACACAA--GACAA---TATAATATATGTAGTACTATAT--C---CCT-TC----T-TCA------TAGTGTA-AGGC---A-----CCGGTGGACGACTCCCAGG----------------AAGT-ACTATAGGATAAAATA-acgtgaa
gi|8 : GGTGTACCAAACCTCACTTTTACCCTCCTCTTAAAATCAAACATTGCCACAT----------AATCTCTTAAAAACCAC---TGCCCACCATATATAAG-GCTC-GAGTTCTCACATAACGAACGC--AATATTT-CTGCCAAGAAGCTATCACGCAGTCAAGAAGCTATCACGCAGTCAAGAAGCTATCACGCAGGTTTA-CAATATGTCCCTG-TTTTAT---CTAT-TTGCCCTCTCGTACCTGC-AACAATTCCCGGAGAACCA-AGGCTTTCCAATCACAAATACAAGCT------AAAGTCGTCATATTTATA-------------ACTAATTCCTCCTCTTCGAATACATG---TTTTATGACTACCTAACAAT--------------------CAGACGGAC-GAATTAACTTAAAA-CAATAGCCATCTTCTAGA--A---ATCGGGATAG--ATATGAATTGCGAATATGGGTCATTATT---------TTATAG-G-GG-TCACTTTTCC--------------------------------------------------ACGCGTAGAATTTCG-TTA---------------GTAACCG-G-----GGGTCA--T-------AAT----------A---A---TGACCA-T-GGATCACTTTCTtatag
gi|9 : TTTT------------AAAACTA-TAT---GATCAGCATGA--GTCAA---TATAATAAATATAGAACTACCTGGC---ACA-TCCTGTT-TTA------CA-CATATAGAG---T-----TTA--GCAC----CGCTGCAA------A-------AAATTCCTGGAAGGCTCAATA---T-G-TACTAT-AGGGTCCTTG-TACA---------GGGTTAACCCGAATCCAGAACTTCTGGAT-ATTGAGCCCATCAACATAAATACTAGA-CAGAAATCTACAGATCCG-T-G----------------------A-TTTTCGTCTAATGGA--AGTGCAATCAC-CCGTGTTA-GTATTTAGTGACATAACAATTATAGTGTCTCTGTGACAAAGTGGTTAAGATTTCTCT--------------TCACTATCCTATTACTATATGGTACTAAAATAGAACCATCGATTCAAAACTATA-CGAAC-TTCGAAA-AGGTAATGATCTGACACAGATC-GGCTG---------ATTCTAACAG----G------------AGAAGCTTACG-GGAGTC---TCCTC---AACAGAAGTAAACAAATATGAAACCAACCAG-AAACTT-TAACACACAGGctgaggatttaatgaccagggatcaatttgt
blockSeqs : A T C A T A TCAATT A TC CGC A T CA TGTC TT T G G TTACCTTTTGGTGTTGATTAAATAATTTCAGTGTAC TAG T C GTTT C TGAGATAAC T C A TTTG C A G TTC A TA TTCTGTAATCGGCGACAAAGTG AGTA C C CT C A A . G G AAAACAGTATAAT T C CA AGTG GT C A ACTATGACTTCCA G T TG T ACGTAATT A G ATC . TTCC AGT GTATGATTTA CTCA CCA C G CTGACC C GTA G A G CAA GC C AAAAATAAAGTA TT TATC TT CAA GGCACATCCTGT G GATAATTAGTGTATAATATTATCA AT G GAAAGCCCAAC T T T AATAC C AAT G G TT TCC T A C AACCA TTGGAAATCAAAATAAATCCAAAG T TGGA AA T . T T TA T CTG A ACTATATGGTACTA A G AA TA A T T A G ACGTAAG A CT G T T AAA TGT CA TAG A A C A G C AA C C G A C TC TT G AN A ATA C T AGC TTA GCCTCG A CT GATTTA C T G T G T CTTTTTCACC T ACC CATT T C G A A A TA G G CTT A T CCAAGAAGCTATCACGCAG CAGTCAAGAAGCTATCACG T A T CAA T C T GAA GA A G T TTT GGGCGGATAA T C G C GTATATGT . G GG AGAAATAAGTT T A G AAAAAAAAATTTTCGCAGGAGGGATCACTCT TT T T GTGAGCCCGGGTCATTTTTAAACGTCTAATAA AG A
blockSeqs : C C A C T C . C A CAT G T A TGGC T T . . TTACGT . . . . A TTGATAGC T . C TCT . . A AAT C . . TAT . C CT C G A . G A ACGACATTATGAT G G . TT GG A C ACAA T G TG G TGT A T TAC . . . CAAGC . CCA C G CTGA . GTT . A C TAA GT T . T T . . TCGTACTT . TATAAGGAGTGT AT A GAATTCTCAAC . C A ATAG T A T C . ACT . . C GACAG TGA C CGC AC . . AAT A C TA A . . T A C CAGAG A AT G A T AAC ACG C CAA T G . A G . T C . G A C TC . G . A . . . AGA . G . . GT A T A C T T . A A T C C A A T . GA T T T . . . . A . C . . . A TAA AA T T G . GGGCGG . A . T ATGTGTA . A GG GA . . . AATTATGACAGGGGTCAAT . G . GATGATCATTTTCTAACGTGAAATAC G T
blockSeqs : C . T . . T . . . T TTCA A . . . . . . T . . TG . A . G G G . . T AAGACAT G A . . GG T G CTCT A C T G T G T CCC . . . GTAA . C G A TTGA . GTT . A G C CA C . A A . . CCTGTT . TTGTGTGTATCA AT G GAAA . T A TG C . . G . . . A T . . G G . GGCTG . G . . . AGA . T . G G . A A . T T . G G T T . A . G . . . ATC . G . . G A T G A . T . T A T C T C T A . AG A A T . . . . A . T . . . T G GC C G T . AGATGG . C . G ATGTTC . A GG TA . . . GGCGTCACTTTT . G . AGTGTCTTTTAGTGATGTGAAGTAA G T
blockSeqs : . . . . . G A . . AA T A ACCA T T . . T . T GAT . . . TTTG . T C C . . . . A T C AC C . T G . . CATTTT . TACTGTAAAGCA GT G CAAA . T T . . . . . . . . . T A . T C . G . . C . . . C . . . ATC . T . . G A T G T . . . A . . . C A A G . GA T A A . . . . A . T . . . A G GA G A T . AGACTG . C . C ACGTGA . A CG TT . . . GGGGTCATTTA . T . GGGGTGATTTTCAAACGTCAACTAA G C
blockSeqs : . T . . . . A TAA . . . TTCA . . . . . . . . . C . . . . T A . . CCCGTC . TAGTGTAAGGCA . G G . . . . T . . . . . . . C . . . AGA . T . . . A . G C . . . A . . . A . . . . . T . T . . . A G GA A T G . AGCCGG . C . G GTGAGT . G AG TT . . . GGGGTCACAT . G . ATTTTCTGACGTGAGATTA T
blockSeqs : . T G . . CCCTTC . CACATATAGAGT . . . . GA . A . . . . . . . . . A . . . . . A G GA A A G . AGACGG . T . G ATGTGT . A GA TT . . . GGGTCACCTT . A . GGGGGTCATAATAA T
blockSeqs : . G . . . . . . . . . . . . . G G . G T . GGACGG . C . T ATGTGC . G GG TT . . . GGTGTCATT . A .
blockSeqs : . . . T G . . . A . C AATCGG . A G TT . . . GTCATT . G .
blockSeqs : . . . . G TC . G . C . . . GGGT . T .
blockSeqs : G . . . . . . . . . A .
blockSeqCons : ** ACCA********* GAAA************* T****** G***** GA* GA AGACGG******** ATGTGN***** ** GGGGTCATT****************************** GGTGGTCATTTTCNGACGTNAAATAA******************* G**
originalCons : NNNNNNNNNNNNNNNNTCACATGTGCGGTAGCACTATGTGAGGTGTATTCAATTACTATTCGTAAATTTCACCAAGTATAGCTCATATTACGCATGACTATTCAGTAATGCTCTGTTGCCCTTTAAGTANAATATAGCGACTGGTTGATTTGCTNATCGATTGATTATTTTAAAAGTTCATAACCTACATTTTAATT------GTANCA-NCACATTTTAACCAAGTATTTCCTGAGCGCCGCACGGTAAGCTCCAATATGGACGAAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGTATTTGTCTTGTGCTTGGATGTC-TGCGTGTTGTTTCCTGTTGGTTTCACATTTGTTTACTTTTTATCTTCCATCAAAGTATAC-CCCCTT-TGGAC------------GTTGATTAAATGATTTCA-C-GTA-CTTTTA---ATTTTCGGGTGTCCACAAATGATATTGT-ATT----CAATGAAATTGTTCGTTGTATAGTCGAGCGTANTGTCCC-----G------CTCTTGTATTACCGTATTCTCAATGCGCATCT-TTTCATTTCATTGTACAGGTGGGAAAAGCTCCAC-GGCGNGTAC-ATT------TGGAGATCAGCTATAAAGGAGCTGACCGCNTTGCGT--TAT----------------------ATA--T-NTT-TAGTNTGCTACAAAGTGCTTAGTAT-GCAATC-G----AAAGATA-----ATTTCATGAACTTTAAATAATGGTGATTTG-A-GA-CA------T------ACATGGGCATTATCAGCTTTCATGNCTAGCGTGAATTCAGATT--AGTT----GTTCATGCGGGGCAGCCAGATTTTGATCCCCATTGCCAACCGNAATTCAATGTCTTCCTGAATAC---------CACCTGTGAGTGCGTTGATGATT-------T--TACGCCGTCGTTTAATTGCCAGTATCATATNACGG-CGGTC----AAT---CT------TTCG-TAG----GCTC--TACCAGTGCTGA--TCT-CAGTTTA-CTGTAAACGACCGACATCTACAATACCACATGCAACTAGTTTT------------AAAAATA-TAG---GATCAGCACGA--GACAA---CATAATATATGTAGTACTACAT--C---ACT-TC----T-TCA------TA-TGTA-AGGA---T-----CCAATGCACGACTCCCTGGAA------A-------AAGT-ACTATAGGGTAAAACA-A-T-G-GACTTTCAAAATTCTCGGTATA-ATCGTGACNGG--AAATCGAACCCAGG-CCTCTGGATTATGGATTCCATTAACATAAATACTAGA-CA-AAATCTACAGATCCG-T-GGAAGTCAAA--A--AATCC-AGA-TTTTNCTCCAA--GACCAGTGCAATCAAACCGTATNAAGTATTTAGTGGCATAACAGTTANAGNGCCTCTGTGACGGAGTGGTNNAGATNTCTCTCTG-------CCAGTCGCTATCTCATCGCTATATGGT----AAATAGAATCGTCGATTCAAAACTA-A-CAAAC-GTTG-AA-AGGCAAANATCTAACACAGATC-CG-TGAGAAGTAAAATTCTGCCAGTACCGGTANCCGTCCATAGNAGCCT-CGTGGAGTCC-TTCCTCCAAAATAAAAGTTAA-AAATANGAAACCAACAGG-AAACAT-TAACACA-AGGCCCTGGGCACAAAACACAGACATCCACACACA--AGACA--CAATCACAAGCAAACAATA---TATA-AC-CAGAGTAAAAAGACACCACAAACATTA---AATAAGCTGGCCGGA-----GGGGT-CAG--TTGCCAAACGGCAACAGGGG-----ATTTGAAACCTTGTTTAAGGTGCACCAAACCTCACTTTTACCCTCCTCTTAAAATCAGAAATTGCCATAT----------AATCTCTTTATAA--AC---TGCACACTGTACATANG-GCTC-G-GCTCTCACATANCGAACAC--TTT-TTT-CTG-------------------TCAAGAAGCTATCACG-------------------CAGGTTTA-CAATATGTCCGTGTTTTTAT---CCGG-GTGCCCTCTCGTACCTGCAAACAATTCCCGGAGAACCA-TGGCTCTTCCATCACAAATACAAGCT--G--AAAAGTCGTCATATTTGTAACACGAGAGTCTNACCAATTCTTCCTCTNANAAGACATG---TTTTATGACTACTAGACAATC-GG--C--G-----ACGAACAGACGGAC-GACCTAACTTAAAA-CAATANACATCTTCTATG--ATGTGTC--GATAG--ACATGAATTGCGAATAGGGGTCATTATT---------TTATAG-G-GG-TCACTTTTTCACAGGA---------------------G-G-G-TCA--C---T--TTT--ACGCGTAGGGTGTCG-TTATTTTTACAGCAATTTGTGACCGTG-----GGGTCA--TTT--A--AACG--T-GA---A---A---TGACCG-G-GGGTCANTTTCTG
finalCons : NNNNNNNNNNNNNNNNTCACATGTGCGGTAGCACTATGTGAGGTGTATTCAATTACTATTCGTAAATTTCACCAAGTATAGCTCATATTACGCATGACTATTCAGTAATGCTCTGTTGCCCTTTAAGTANAATATAGCGACTGGTTGATTTGCTNATCGATTGATTATTTTAAAAGTTCATAACCTACATTTTAATT------GTANCA-NCACATTTTAACCAAGTATTTCCTGAGCGCCGCACGGTAAGCTCCAATATGGACGAAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGTATTTGTCTTGTGCTTGGATGTC-TGCGTGTTGTTTCCTGTTGGTTTCACATTTGTTTAC--TTTATCTTCCATCAAAGTATAC-CCCCTT-TGGAC------------GTTGATTAAATGATTTCA-C-GTA-CTTTTA---ATTTTCGGGTGTCCACAAATGATATTGT-ATT----CAATGAAATTGTTCGTTGTATAGTCGAGCGTANTGTCCC-----G------CTCTTGTATTACCGTATTCTCAATGCGCATCT-TTTCATTTCATTGTACAGGTGGGAAAAGCTCCAC-GGCGNGTAC-ATT------TGGAGATCAGCTATAAAGGAGCTGACCGCNTTGCGT--TAT----------------------ATA--T-NTT-TAGTNTGCTACAAAGTGCTTAGTAT-GCAATC-G----AAAGATA-----ATTTCATGAACTTTAAATAATGGTGATTTG-A-GA-CA------T------ACATGGGCATTATCAGCTTTCATGNCTAGCGTGAATTCAGATT--AGTT----GTTCATGCGGGGCAGCCAGATTTTGATCCCCATTGCCAACCGNAATTCAATGTCTTCCTGAATACCA---------CCTGTGAGTGCGTTGATGATT-------T--TACGCCGTCGTTTAATTGCCAGTATCATATNACGG-CGGTC----AAT---CT------TTCG-TAG----GCTC--TACCAGTGCTGA--TCT-CAGTTTA-CTGTAAACGACCGACATCTACAATACCACATGCAACTAGTTTT------------AAAAATA-TAG---GATCAGCACGA--GACAA---CATAATATATGTAGTACTACAT--C---ACT-TC----T-TCA------TA-TGTA-AGGA---T-----CCAATGCACGACTCCCTGGAAA-------------AAGT-ACTATAGGGTAAAACAT------GACTTTCAAAATTCTCGGTATA-ATCGTGACNGG--AAATCGAACCCAGG-CCTCTGGATTATGGATTCCATTAACATAAATACTAGA-CA-AAATCTACAGATCCG-T-GGAAGTCAAA--A--AATCC-AGA-TTTTNCTCCAA--GACCAGTGCAATCAAACCGTATNAAGTATTTAGTGGCATAACAGTTANAGNGCCTCTGTGACGGAGTGGTNNAGATNTCTCTCTG-------CCAGTCGCTATCTCATCGCTATATGGT----AAATAGAATCGTCGATTCAAAACTA-A-CAAAC-GTTG-AA-AGGCAAANATCTAACACAGATC-CG-TGAGAAGTAAAATTCTGCCAGTACCGGTANCCGTCCATAGNAGCCT-CGTGGAGTCC-TTCCTCCAAAATAAAAGTTAA-AAATANGAAACCAACAGG-AAACAT-TAACACA-AGGCCCTGGGCACAAAACACAGACATCCACACACA--AGACA--CAATCACAAGCAAACAATA---TATA-AC-CAGAGTAAAAAGACACCACAAACATTA---AATAAGCTGGCCGGA-----GGGGT-CAG--TTGCCAAACGGCAACAGGGG-----ATTTGAAACCTTGTTTAAGGTGCACCAAACCTCACTTTTACCCTCCTCTTAAAATCAGAAATTGCCATAT----------AATCTCTTTATAA--AC---TGCACACTGTACATANG-GCTCGA-GCTCTCACATANCGAACAC--TTT-TTT-CTG-------------------TCAAGAAGCTATCACG-------------------CAGGTTTA-CAATATGTCCGTGTTTTTAT---CCGG-GTGCCCTCTCGTACCTGCAAACAATTCCCGGAGAACCA-TGGCTCTTCCATCACAAATACAAGCT--G--AAAAGTCGTCATATTTGTAACACGAGAGTCTNACCAATTCTTCCTCTNANAAGACATG---TTTTATGACTACTAGACAATCAGACGG--------ACGAACAGACGGAC-GACCTAACTTAAAA-CAATANACATCTTCTATGATGTGN-----GATAG--ACATGAATTGCGAATAGGGGTCATTATT---------TTATAG-G-GG-TCACTTTTTCACAGGAGGGGTCATT------------------------------TTT--ACGCGTAGGGTGTCG-TTATTTTTACAGCAATTTGTGACCGGTGGTCATTTTCNGACGTNAAATAA-------------------TGACCGG--GGGTCANTTTCTG
Alignments
lowQualScore : 1 222222 1 11 11 222222 6666666666666666666666666666666666666 222 1 2222 66666666666666 1 2222 1 1 5555555555 11 8888888888888888888888 11111 1 333 222222 22222 666666666666666666666 2222 3333333333333 3333333333 1 1111 111 22222222222 1111 111 111111 111 222222222222 1111111111111111 444444444444444444444444444 44444444444444444 3333333 2222 11 333 222222 6666666666666666666666666666 11111 111 1 4444444444 33333333333333 111 11 1 1 11111111 1111 11 111 11 11 111 111111 222222 1 3333333333 111 1111 11 111 4444444444444444444 3333333333333333333 11111 11111111111 3333333333333333333333333333333333333333333333333 22222222222 1111
lowQualScore : 1 2 1 0 8 3 1 888888 0 11 333 4 4 00 0 0 99999 0 222222 8 8 4444444444444444444444444444444444444 333 0 7 3 8888 0 1 99999999999999 7 2 3 3333 6 0 0 0 2222222222 0 1 33 8888888888888888888888 55555 0 1 33 111 555555 7 55555 2 1 000000000000000000000 5 1 99 3333 22 3 1 6666666666666 1 1 55 5 3333333333 1 1 111 6 4444 111 33333333333 4444 999 2 1 333333 6 777 6 1 3 555 44 1 999999999999 55 9999 0 66 888 0 6666666666666666 5 333333333333333333333333333 88 1 77777777777777777 6 1 7 3333333 3 1111 2 1 33 0 777 7 7 6 777777 0000000000000000000000000000 1 99999 333 0 1 5 1 1 22 1 7777777777 3 0 88888888888888 0 3 2 111 44 0 0 1 1 8 55555555 3 0 33 6 4 5 666 9999 11 222 4 1 6 1 0 3 6 00 1 6 1 3 3 44 11 3 99 0 1 111 5 5 555 888 777777 5 77 0 000000 1 1 0 3 1 0 1 5555555555 1 111 4444 3 1 3 3 1 6 55 3 1 222 6 6 4444444444444444444 8888888888888888888 3 5 5 888 5 5 3 66 66 0 0 0 4 1 1 777 3 1 00000 0 4 1 5555 3 55 55 1 11 55555555555 3 7 3 6666666666666666666666666666666666666666666666666 1 4 66666666666 7777 3 3 3 0 888 1
lowQualScore : . . . . . . . ...... . .. ... . . .. . . ..... . ...... . . ..................................... ... . . . .... . . .............. . . . .... . . . . .......... . . .. ...................... ..... . . .. ... ...... . ..... . . ..................... . . .. .... .. . . ............. . . .. . .......... . . ... . .... ... ........... .... ... . . ...... . ... . . . ... .. . ............ .. .... . .. ... . ................ . ........................... .. . ................. . . . ....... . .... . . .. . ... . . . ...... ............................ . ..... ... . . . . . .. . .......... . . .............. . . . ... .. . . . . . ........ . . .. . . . ... .... .. ... . . . . . . . .. . . . . . .. .. . .. . . ... . . ... ... ...... . .. . ...... . . . . . . . .......... . ... .... . . . . . . .. . . ... . . ................... ................... . . . ... . . . .. .. . . . . . . ... . . ..... . . . .... . .. .. . .. ........... . . . ................................................. . . ........... .... . . . . ... .
lowQualScore : 0 0 0 7 8 2 2 888888 8 00 000 2 2 22 2 8 44444 8 444444 0 0 1111111111111111111111111111111111111 333 7 3 3 3333 7 0 00000000000000 3 0 7 3333 7 2 0 8 8888888888 2 0 88 8888888888888888888888 88888 0 0 22 555 222222 0 00000 5 2 222222222222222222222 2 0 22 3333 00 7 0 8888888888888 0 4 88 0 2222222222 4 0 333 7 2222 777 00000000000 2222 333 5 0 333333 7 555 7 7 7 333 77 0 333333333333 44 0000 4 99 888 3 0000000000000000 7 666666666666666666666666666 77 7 22222222222222222 7 7 8 3333333 2 1111 5 0 88 8 000 3 3 7 000000 0000000000000000000000000000 0 33333 777 7 0 5 0 0 00 0 3333333333 7 7 00000000000000 7 2 5 000 22 0 0 0 2 8 00000000 0 2 55 5 5 6 000 8888 22 444 0 4 7 0 8 7 7 22 0 7 0 8 2 00 00 2 22 7 5 777 0 0 666 888 000000 7 99 7 777777 4 4 7 0 7 4 0 0000000000 4 888 8888 2 0 7 5 0 7 00 3 0 777 7 7 3333333333333333333 8888888888888888888 6 0 1 888 7 7 6 11 11 1 1 9 1 0 0 888 7 6 00000 9 0 0 5555 6 99 00 0 11 00000000000 6 3 6 2222222222222222222222222222222222222222222222222 2 0 44444444444 1111 0 0 6 4 666 0
consensus : NNNNNNNNNNNNNNNNTCACATGTGCGGTAGCACTATGTGAGGTGTATTCAATTACTATTCGTAAATTTCACCAAGTATAGCTCATATTACGCATGACTATTCAGTAATGCTCTGTTGCCCTTTAAGTANAATATAGCGACTGGTTGATTTGCTNATCGATTGATTATTTTAAAAGTTCATAACCTACATTTTAATT------GTANCA-NCACATTTTAACCAAGTATTTCCTGAGCGCCGCACGGTAAGCTCCAATATGGACGAAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGTATTTGTCTTGTGCTTGGATGTC-TGCGTGTTGTTTCCTGTTGGTTTCACATTTGTTTAC-TTTT-ATCTTCCATCAAAGTATAC-CCCCTT-TGGAC------------GTTGATTAAATGATTTCA-C-GTA-CTTTTA---ATTTTCGGGTGTCCACAAATGATATTGT-ATT----CAATGAAATTGTTCGTTGTATAGTCGAGCGTANTGTCCC-----G------CTCTTGTATTACCGTATTCTCAATGCGCATCT-TTTCATTTCATTGTACAGGTGGGAAAAGCTCCAC-GGCGNGTAC-ATT------TGGAGATCAGCTATAAAGGAGCTGACCGCNTTGCGT--TAT----------------------ATA--T-NTT-TAGTNTGCTACAAAGTGCTTAGTAT-GCAATC-G----AAAGATA-----ATTTCATGAACTTTAAATAATGGTGATTTG-A-GA-CA------T------ACATGGGCATTATCAGCTTTCATGNCTAGCGTGAATTCAGATT--AGTT----GTTCATGCGGGGCAGCCAGATTTTGATCCCCATTGCCAACCGNAATTCAATGTCTTCCTGAATAC---------CACCTGTGAGTGCGTTGATGATT-------T--TACGCCGTCGTTTAATTGCCAGTATCATATNACGG-CGGTC----AAT---CT------TTCG-TAG----GCTC--TACCAGTGCTGA--TCT-CAGTTTA-CTGTAAACGACCGACATCTACAATACCACATGCAACTAGTTTT------------AAAAATA-TAG---GATCAGCACGA--GACAA---CATAATATATGTAGTACTACAT--C---ACT-TC----T-TCA------TA-TGTA-AGGA---T-----CCAATGCACGACTCCCTGGAA------A-------AAGT-ACTATAGGGTAAAACA----TG-ACTTTCAAAATTCTCGGTATA-ATCGTGACNGG--AAATCGAACCCAGG-CCTCTGGATTATGGATTCCATTAACATAAATACTAGA-CA-AAATCTACAGATCCG-T-GGAAGTCAAA--A--AATCC-AGA-TTTTNCTCCAA--GACCAGTGCAATCAAACCGTATNAAGTATTTAGTGGCATAACAGTTANAGNGCCTCTGTGACGGAGTGGTNNAGATNTCTCTCTG-------CCAGTCGCTATCTCATCGCTATATGGT----AAATAGAATCGTCGATTCAAAACTA-A-CAAAC-GTTG-AA-AGGCAAANATCTAACACAGATC-CG-TGAGAAGTAAAATTCTGCCAGTACCGGTANCCGTCCATAGNAGCCT-CGTGGAGTCC-TTCCTCCAAAATAAAAGTTAA-AAATANGAAACCAACAGG-AAACAT-TAACACA-AGGCCCTGGGCACAAAACACAGACATCCACACACA--AGACA--CAATCACAAGCAAACAATA---TATA-AC-CAGAGTAAAAAGACACCACAAACATTA---AATAAGCTGGCCGGA-----GGGGT-CAG--TTGCCAAACGGCAACAGGGG-----ATTTGAAACCTTGTTTAAGGTGCACCAAACCTCACTTTTACCCTCCTCTTAAAATCAGAAATTGCCATAT----------AATCTCTTTATAA--AC---TGCACACTGTACATANG-GCTCGAGCTCTCACATANCGAACAC--TTT-TTT-CTG-------------------TCAAGAAGCTATCACG-------------------CAGGTTTA-CAATATGTCCGTGTTTTTATC---CGG-GTGCCCTCTCGTACCTGCAAACAATTCCCGGAGAACCA-TGGCTCTTCCATCACAAATACAAGCT--GAAAAG--TCGTCATATTTGTAACACGAGAGTCTNACCAATTCTTCCTCTNANAAGACATG---TTTTATGACTACTAGACAATCGGACGGACGAACAGACGGACGACCT-----AACTTAAAA-CAATANACATCTTCTATG--ATGT-G-TGATAG--ACATGAATTGCGAATAGGGGTCATTATT---------TTAT-AG-GGG-TCACTTTTTCACA--------------------GG----------AGGGGTC-A---T-T--TTTACGCGTAGGGTGTCGTTATTTTT-ACAGCAATTTGTGACC--G---G----GGTCATTTTCTAACGTGAAATAATGACCG-G-GGGTCANTTTCTG
Reference ( family-816 ) : NNNNNNNNNNNNNNNNTCACATGTGCGGTAGCACTATGTGAGGTGTATTCAATTACTATTCGTAAATTTCACCAAGTATAGCTCATATTACGCATGACTATTCAGTAATGCTCTGTTGCCCTTTAAGTANAATATAGCGACTGGTTGATTTGCTNATCGATTGATTATTTTAAAAGTTCATAACCTACATTTTAATT------GTANCA-NCACATTTTAACCAAGTATTTCCTGAGCGCCGCACGGTAAGCTCCAATATGGACGAAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGTATTTGTCTTGTGCTTGGATGTC-TGCGTGTTGTTTCCTGTTGGTTTCACATTTGTTTAC-TTT--ATCTTCCATCAAAGTATAC-CCCCTT-TGGAC------------GTTGATTAAATGATTTCA-C-GTA-CTTTTA---ATTTTCGGGTGTCCACAAATGATATTGT-ATT----CAATGAAATTGTTCGTTGTATAGTCGAGCGTANTGTCCC-----G------CTCTTGTATTACCGTATTCTCAATGCGCATCT-TTTCATTTCATTGTACAGGTGGGAAAAGCTCCAC-GGCGNGTAC-ATT------TGGAGATCAGCTATAAAGGAGCTGACCGCNTTGCGT--TAT----------------------ATA--T-NTT-TAGTNTGCTACAAAGTGCTTAGTAT-GCAATC-G----AAAGATA-----ATTTCATGAACTTTAAATAATGGTGATTTG-A-GA-CA------T------ACATGGGCATTATCAGCTTTCATGNCTAGCGTGAATTCAGATT--AGTT----GTTCATGCGGGGCAGCCAGATTTTGATCCCCATTGCCAACCGNAATTCAATGTCTTCCTGAATAC---------CACCTGTGAGTGCGTTGATGATT-------T--TACGCCGTCGTTTAATTGCCAGTATCATATNACGG-CGGTC----AAT---CT------TTCG-TAG----GCTC--TACCAGTGCTGA--TCT-CAGTTTA-CTGTAAACGACCGACATCTACAATACCACATGCAACTAGTTTT------------AAAAATA-TAG---GATCAGCACGA--GACAA---CATAATATATGTAGTACTACAT--C---ACT-TC----T-TCA------TA-TGTA-AGGA---T-----CCAATGCACGACTCCCTGGAA------A-------AAGT-ACTATAGGGTAAAACA----TG-ACTTTCAAAATTCTCGGTATA-ATCGTGACNGG--AAATCGAACCCAGG-CCTCTGGATTATGGATTCCATTAACATAAATACTAGA-CA-AAATCTACAGATCCG-T-GGAAGTCAAA--A--AATCC-AGA-TTTTNCTCCAA--GACCAGTGCAATCAAACCGTATNAAGTATTTAGTGGCATAACAGTTANAGNGCCTCTGTGACGGAGTGGTNNAGATNTCTCTCTG-------CCAGTCGCTATCTCATCGCTATATGGT----AAATAGAATCGTCGATTCAAAACTA-A-CAAAC-GTTG-AA-AGGCAAANATCTAACACAGATC-CG-TGAGAAGTAAAATTCTGCCAGTACCGGTANCCGTCCATAGNAGCCT-CGTGGAGTCC-TTCCTCCAAAATAAAAGTTAA-AAATANGAAACCAACAGG-AAACAT-TAACACA-AGGCCCTGGGCACAAAACACAGACATCCACACACA--AGACA--CAATCACAAGCAAACAATA---TATA-AC-CAGAGTAAAAAGACACCACAAACATTA---AATAAGCTGGCCGGA-----GGGGT-CAG--TTGCCAAACGGCAACAGGGG-----ATTTGAAACCTTGTTTAAGGTGCACCAAACCTCACTTTTACCCTCCTCTTAAAATCAGAAATTGCCATAT----------AATCTCTTTATAA--AC---TGCACACTGTACATANG-GCTCGAGCTCTCACATANCGAACAC--TTT-TTT-CTG-------------------TCAAGAAGCTATCACG-------------------CAGGTTTA-CAATATGTCCGTGTTTTTATC---CGG-GTGCCCTCTCGTACCTGCAAACAATTCCCGGAGAACCA-TGGCTCTTCCATCACAAATACAAGCT--GAAAAG--TCGTCATATTTGTAACACGAGAGTCTNACCAATTCTTCCTCTNANAAGACATG---TTTTATGACTACTAGACAATCAGACGGACGAACAGACGGACGACCT-----AACTTAAAA-CAATANACATCTTCTATG--ATGT-G-NGATAG--ACATGAATTGCGAATAGGGGTCATTATT---------TTAT-AG-GGG-TCACTTTTTCACA--------------------GG----------AGGGGTC-A---T-T--TTTACGCGTAGGGTGTCGTTATTTTT-ACAGCAATTTGTGACC--G---GT---GGTCATTTTCNGACGTNAAATAATGACCG-G-GGGTCANTTTCTG
gi|1 : TCACATGTGTGGTAGCATTATGTGAGGTGTATTCAACTACTATTTGTAAATTTCACCAAGTATAGCTCATATTACACATGAGTATTCAGTAAAGCTCTGTTGCCCTTTAAGTAGAATATAGCGA--------TTTGCTGATCGTTTGATTATTTTAAAAGTT-ATAACCTATATCTTAATT------GTATCA-GCACAGTTTAACTAGGTATTTCATGAACGCCACACGATAAGCTTCAATATGGACACAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGTATTTGTCTTGTGCTTGGATGTC-TGCATGTTGTTTCCTGTTGGTTTCACATTTGTTTAC-TTTTTATCTTCCATCAAAGTATGC-CCCCTT-TG-AC------------GTTAATTAAATGATTTCA-CCGTAACTTTTA---ATTTTCAAGTGTCCACAAATGATATTGT-ATT----CAATGAAAATGTTTGTTGTATAGTCAAGTATTTTGTCCC-----G-------TCT-GTATCATCATAATCTCAATGTGCA-------CATTTCATTGTACAGGTGGGAAAAGCTCCAT-GGCATATACTATTGGAGAATGGAGATCAGCTATAGAGGAGCTGACCACATTGTGT--TAT----------------------ATA--T-TTT-TAATGTACCATAAAGTGCTTAGTATTGTAGTCTGCTACAAAG-TATTAGTATTTTATGAACGTTAATTAATCATGATTTG-A-----A------T------ACATAGGCATAATCAACTTTCATGAATGACATGAATTCAGATT--AGTT----GTTCATGCGGTGCAGCCAGATTTTGATTGCCATTGCCAATAGTAATTCAATGTCTTTCTGAAT------------------GAGTGCATTGAGGATT-------A--TATATCATTTTATAATAATTAGTATCATATTAAGGGCGGTC----AAT---CT------TTTG-TAG----GCTC--TACGAGTGTTGA--TCT-CAATTTA-CTGAAAACAGCTGACATCTACAATACAACGTGTAAATAGTTTT------------AAAAATA-TAG---GATCAGCACAA--GACAA---CATAATACTTGTAGTATTACAT--C---ACT-TC----T-TCA------TACTGTA-AAGA---T-----TCAAAGCACAACTCCCTT---------A-------AAGT-GCTATGGGGTAAAACAGA--TGGACTTTCAAAATTCTCTGTATACATCGTGACTGG--AAATTGAACCCAGG-----TGAATTATGGATTC-ATTAACACAAATATCA----A-AAATCTACAGATCTG-TAGGAAGTCAAA--AGTAATCCCAGA-TTTTACTCCAA--GACCAGTGCAATGAAACCATAAAAAGTATTTAGTGGTATAACAGTTAGAGGGCCTCTGTGACGGAGTAGTATAGATATCTCTCTGTCAGCTGCCAGTCACTGTCTCATCGTTATAAGAT----AAATAGAATCATCAACTCAGAACTA-A-CAAAC-GTTG-AA-AGGCAAAGATCTTACACAGATC-CG-TAAAAAGTCAAATTCTGTTAGTACCAATAGCCGTCTATAGTAGCCT-TGTGGAGTCC-TTCCTCCAAAATAAAAATTAA-AAATACGAAACCAACAGG-AATCAT-TAACACC-AAGCCCTGGGCATAAAACACAGACATTCGCACACA--AGACA--CAATTACAAGCAAACAACA---TATA-AT-CAGAGTAAAAAGAAACCACAAACATTA---AATTAGCTGGTCAGA-----GGGGT-CAG--TTGCCAAATGGCATCAGGGG-----ATTTGAAACCTTTTTTAAGGT-TACCAAACCCCACTTTTACTCTCCACTTAAAATCAGAAATTGCCATAG----------AATGTCTTTATAA--AC---TGGACACTGTACATATG-GCTC--GCTCTCACATATCAAACAC--TTT-TTG-CTT-------------------TAAAGAAGTTATCGCA-------------------CAGG-TCA-CAATATGTATGTGTTTTTATC---AGG-GTGCCCTCTCTTACCTGCAAATAATTCCCAGAGAACCA-TGACTCTTCCATCAAAAATACAAGCT--GAAAAG--TCATCATATTTGTAACAT--GAGTCTTACCAATTCTTCCTCTTACAAGACATG---TTTTATAACTGTCAGACAATCAG--------ACAGACGGACGACTT-----AA-TTAAAA-CAATATACATTTTCTCTG--ATGT-GTTAATAGAAACATGAATTGCAAATAGGGGTCATTATT---------TCAT-AGTGGG-TCATTTTTTCACA--------------------GC----------AGCGTTT-A---C-T--TTTACTTATAGGGTGTCATTATATTT-ACAGCAATTTGTGACCATG---G----GGTCATTT----A-ATAAA--AATGACTG-GCAGATCAGTTTCTG
gi|10 : ctgtctgtcacatattACACTGTGT-TAAGAGCTCTAGTGTTCACAGAGCAAATAC--TTT-TTT-TTG-------------------TTCGGAAGCTATCACT-------------------CTGGTTTA-CAATATGTCCGCGTGTTCATCAACCGG-ATGTACTCTCACACATTTAAACGGTTCCCGG-GAAGCACTGGCTTTTCCTTTCCAAAAACAATGT--GAAAAAAATCGTCTTATTTGTAACACGA-----------ATTCTTCCTCTGATAAGACATG---ATTTATGACTACTAAACAATCGGGCGGACGAACAAAAGAGCGA-TG-----AACGTAAAAGCAATGCACATCTTCT-----------------C--ACATAAAAT----ATAGGG---------------------------GG-TCACTTTTTTACA--------------------GG----------A---GTC-A---T-T--TTTATGC-TAATGTGTCGCTAATTTC-ACAGCCATTGATGGCC--A---GT----GTCTTTTAGTGATGTGAAGTAATGACGG-G-TGGTCAt
gi|11 : CCATCCATAAAAGTCT-TGTGGGGGCCATTCCTCTAGAATAAGAATTGA-AAACAAGAAACCAATAGG-AAACAT-TAACACG-AGGCAATGGGCACGAAACACAAATATCCACACACA--AGGCA--CAATCACAAGCAAACAATA---TATA-AC-T-GAGTAAAAAGACACCACACTCATTA---AATAAGCTGGCCAGA------GGGT-CAG--TTGCCAAA-------------------TTACCACC-------AGGTGCACTAAACCTAACTTCTACCGGCCTCTTAAAATTAGAAATTGCCATAC----------AGTCTCTTTTTAA--AC-------CACTATACAT-TG-GCTTGAACTCTCACATATCCAATAC---TT-TTT-CTG-------------------TCTAGAAGCTATCACA-------------------CAGGCTTA-CAATTTTTCCGTGCCTTTAaatagtgtta
gi|12 : aGCATTATAATATTTTATGCCCAGCGCGAATTAAGATT--AGTTTT--GTAAATGCGGGTCAGCCTGACTTTGATCCCCATTGCCAACCGAAATTCAATGGCTTCCTTAATACTATGACTTCCACTTGTGCGGGTGTTGATTATTACGTAATT--TATACAATCATGTAACTACCAGTTTTATATATCTG-CGGTCTTCCAAG---CT------CAAGCTTG----GTTCCATACCAGTGCTGA--TCT-CAGTATA-CTGTAAACGAAGGACATCTACAATATCACATGCAACTAGTTTT------------AAGAATA-TAG---TCACAGCACGA--GACAA---GATTATATATGTAATACTACAT--C----CTGTT----TGTCG------TA---TA-AGGAGTGT-----ACA--GCACGACTCCCa
gi|13 : atCGTTATTA---TTCATGGCAAGTGTGAATGTAATTC--AGTT----GGTCATAC------------TTTCGATCTCTAATGTCACCCACAATTCAATGTATTCCTGAATAC---------AACCTGTGGGTGGGT--ATGGTT-------TGTTACACCGTCATTTAATAGTCAGTTCCATATTACGG-CCGTC----AAT---AC------GTAA-TAG----GCTC--TACCAGTA----------------------AAATG-CC-ACATGTA----ACCA----------GTTTT------------TAAAACA--AA---AA-CAAAACAATTCACAACAACAAAATATATGTAGTACT-CCC--C---ATT-TT----T-ACA------T--TGTG-TGTA---TCA---CCAATACACATTTTCCTGGAA------AGCCCAACAAGT-ACTATAAGGTTAAACA----
gi|14 : TCACATGTGCGGTAGCACTATGTAAGGTGTATTGAATTATTTTTCGTAAATTTCACCAAATAAAGCTTTAATTACGCATGACTATTCAGTAATGCTCTGTTACCATTACAGTTAAACATAGTAATTGGTTGATTGGCTCACTGATTGATTATTTTAAAAGTTAA-AGACTACATTTAAATT------GTA-CATCCACATTTTAATCAAATATTTCCTGAGCGCCACATGG-AAGCTTCAATATTGACGAAGTGGAAGACTTTGGTTTTATACTGTGGTTTGCTTATAAATGTTTTCTACTTGGA---------TGTTGTTT------------ACATTTG------------TCTTCCATCAAAGTATAC-CCCTTT-TGGAC------------GTTataggaccggaaattggatccagttctacggaaa
gi|15 : gCTATCACG-------------------TATGTTTA-CACTATGTTCATGTTTTTA-C---CGGTGTGCCCTTTCGTACCTGCAAACAATTCCCGGAGAACGA-AGGTACTTCAATCACAAATGCAAGCT--GAAAAG--CCGAACTATTTGTAACACGAGAGTCCAACAAATTCTTTCTCTTAGAGTACATG---TTTTATAAATACTAAACAGTCAGATGGACGAAAAGACGGACGACCT-----AACATTAAA-CAATATATATCTTCTATG--ATGT-T-CGATAG--ACATGCATTGCGAGTAGAGGGGA-TGTT---------C-----G-GGG-GCATTTTCTAACG--------------------GGAAATTATGACAGGGGTCAA---T-T--TCTG-----AGGGTGTCGAAATTTtttaggttaa
gi|16 : GAGAACCA-TGGCTGTTCCTTCGCAAATACAAGCT--GAAAAG--TCGTCATATTTGCAACACAAGAACCTTATTAACTCTTCCTCTGATCAG--ATG---CTTTATGATTACTAGACAATGAGACTGACGAACAGACGGACGAACT-----AAC--AA----AGTAGACATATTCCATT--ACGT-G-AGATAG--ACATGAATTGTAAATAGTGGTCACTGTT---------GAAT-GG-GGG-TCACATTTTCACAGGAAAAAAAAAATTTTCGCAGG----------AGGGATC-ACT-C-T--TTTACGCGTAGGGTGTCGTTATTTTT-A---CAATTTGTGACC--G---ccgtt
gi|17 : ATA-AAG---GATCACCACGA--GACAA---CATATCAGATGTAGTACTACAT--TCGTACT-T-----T-TCAGATAATTAGTGTATAATA---TTATCACCAATGCACGACTTCCTGGAATTCTCAAC------AAGT-ATCATAATGTAAAACAAATACG-ATTTTCGAAATTCCCGGTAT----CGTGACGGG--AAATCGAACCCAGGTCCTCTGGATTGTGG-TTTCATTAACCTAAACACTAAACCA-AAATCAACAGGTCCGTT-GGAAATCAAAATA--AATCC-AAAGTTCTTCACCAA--CGCCAGTGCAACC-AACCATAT
gi|18 : -AAATAAAAAA--AATA---AAACAT--AACCCA-AGGCCCTGTGC-CAAAACAGATACATCTACACACA--AGACA--CAATCACAAGCGAACAATAATATATG-AC-CAGCGTAATAAGACACCATAAACATTATTAAGTATGCCGGTCGGA-----GGGGT-CAG--TTGTCAAACGGTAACAGGGG-----ATTTGAAACCTTGTTTAAGGTACACCATACCTCACTTTTTCC
gi|18 : TTTT-TC---CGG-ATGCCCTCTCGTACTTGCAAACggatgccctctcgtacttgcaaaccaagtcttcctttcaga
gi|19 : aaataaaaaaaataaaacataacccaaggccctgtgccaaaacagatacatctacacacaagacacaatcacaagcgaacaataatatatgaccagcgtaataagacaccataaacattattaagtatgccggtcggaggggtcagttgtcaaacggtaacaggggatttgaaaccttgtttaaggtacaccatacctcacGATCATTTCAAAAGTTCATAACCTACATTTCAATTTCAATTGTAACA-ACACATTTTAACCAAGTATTTCCTGAA--------GGT---CTCCAATATGGACGAAGAGGAGGACTCTGGTTATATAATGTGGTTTGCTTGAATTTGTCTTGTGCTTGGATGTC-TGCGTGTTGTTTCCTGTTGGTTTCACATTTGTTTACTTTT--ATTTTCAATCAACATATAC-GCCCTT-TAGA--------------TT-----AATGTTTTTA-T-GTcaagtcttcctttcaga
gi|2 : AGGAGGACTCTGGTTATATAATGTAGTTTACTTGTATT------GTGCTTGGATGGC-TGCGTGTTGTTTCCTGTTGGTTTCACAAACGTTTAC-TTTT-ATTTTCCATTAAAGTATACGTCCTTT-TGGAC---------------------------TTA-C-GT----TTTATAGGTTTTCAGGTGTTCATAAATGATATTGTCATTGTTTCAATGAAATTGTTCGCTGTATATTCGAGCATACTGTCCT-----GAGATAACTCTTGTATTACCGTTTTCTCAATGAACATCT-TTTTCTTTCATTGTACAGGTCGAAAAAGCTGCACAGGTG-GTAC---------------------TATAAAAGAGCTGACCGCATTGCGT--TGT----------------------ATT--T-GTT-TTGTCGGCTACAAAGTGCTTAGTAT--CAATC-A----AAAGATA-----ATTTCATGAACTTTGAATAATGGTGATTTG-A-AAACAGTATAAT------ACATGGGCATTATCAGCTTTCATGACTAGTGTGAATACAGATT--AGTT----GTTAATGTGGGGCAGACAGATTGTGATCCCACTTGCCAACCGGAAGTCAATGTCTTCCTGAATCT---------CTCCCGTGAGAGCGTT-ATGATC-------T--TACGTCGTT-TTTAATTGTCAGTATCATATCCCGG-CGAAC----AAT---CT------TTTG-TAG----ACTT--TACGAATGTTGA--CCTCCAGTTTA-CTATAAACGACGGACATCTAC--TACCACATGTAATTAGTTTTAAAAATAAAGTAAAAAATA-TAGTATCATCAGAACGA--GACAA---CATTATATATGTAGTACCACAT--C---CCG-TC----T-TCA------TACTGTA-AAGC---A-----CAAATGCACGACTCCCTGGAA------A-------TAGT-AC---AGCGT--AACA----T----TTTTATGATTCGCGGTATA-ta
gi|20 : ACATCTTCTATG--GTGA-G-TGAGAG--ACATGACTGGCAAATAAGGGTCATTATTAGAAATAAGTTATAAG-AGG-TAATTATTTCACA--------------------GA----------AGGTGTC-ATT-T-T--TTTACGCGTAGTGTTTCGTTATTTTT-ACAGCCATTTGT----------------GCCATTTTCTGACGTGAGATTATGACCGAG-GAGTCGATTTCT
gi|21 : aCTG-------CCAATCGCTATCTCACCA----AT---------ATAGAATCGTCGATTTAA----A-A-CAAAC-ATTG-AATATGCCAATATCTAA-ACAGATC-CA--GAGAAGTAAAAGACTGCTTCTACCGGTATCTG-CCATAACAGCCaaggaggtatataaaaattacgtaacatc
gi|21 : C-TTCCTCCAAAATATAAGTTAA-ACATAAGaaatgagtatctgtgggatttaaacctttttaatcctactaggagaggcttcctccaaaatataagttaaacataag
gi|22 : ctgccaatcgctatctcaccaatatagaatcgtcgatttaaaacaaacattgaatatgccaatatctaaacagatccagagaagtaaaagactgcttctaccggtatctgccataacagccaaatgagtatctgtgggatttaaacctttttaatcctactaggagaggTTATAATTCCAAACTTAAAAAAA--ACATCATATTTATAACACGCGAGATTCACCCATT-TTCCTCTAATATGACATG---TTTTACGACTACTGGACAACCGGGCGGATAAACAAACTGACGGCCTGGCCTATCTTAAAA-CAATACACCTCTTCTATA--ATGT-G-TGATAG--ACACGAACTGCAAATATGCGTCAT
gi|23 : cTATGACTACTAGACAATCAGCCGGACCAACAGACTGACGACCT-----AACTTAAAA-TAAAAGACATTTTCCAAG--ATGT-G-TAAAAG--ACATGAATTGCGAATAGAAGTCATTATT---------TAAT-AG-GGG-TCACTTTTTCACA--------------------GG----------AGGCGTC-ACTTT-T--TTTACGCGTAAGATGTCGT--TTTTT-ACAGCAAT
gi|24 : aTAATTGCCAGTATTATATGATTG-GGTTC----GATAGTCTGTATGATTTA-TAACTCAGTTCCATACCACTACTGACCTCT-CA---TAGCTGTAATCAACTGGCATCTTTAATAACACATCAAACTAGTTTT------------AAGAATATTAG---AATCAGCACGA--GATAA---
gi|25 : aTTATT---------TTAT-AG-GGGGTCACTTTTTCAGA--------------------GG----------AGGGGTC-A---CAT--TCTACGCGAAGAGTATCGTTATTTAT-ACATCAATGTGGGACC--G---GG---GTTCAT
gi|26 : TA-AC-CAGAGCAAAAACACACCACAAACATTA---AATAAGCTGGCCGGA-----GGGGT-AAA--CTGCCAAACGGCAACAGGGG-----ATTTGAAACCTTGTTTAAAGgattttgcattgaaatgtc
gi|27 : gGGGGTC-ACC-T-T--TTTACGTGTGGAGTGTCGTTTTTTTTTACGTTAACTTGTGACC--G---AT---GATCATTTTCTAACGTGAAATACTGATTG-G-GGc
gi|28 : gCA--CACTCACAAGCAAACAGTA---TATACACTC-------AAAGATACATTAAACATTA---AATATGCTGGCCAAA-----TGG
gi|29 : gG-------------------TCAGGAAGCTTTCAAG-------------------C-GGTTTAACAGTATGTCCGTG-TTTTATC---
gi|3 : TCACATGTGCTATAGCACTATGTGAGGTGTATTCAATTACTATTCGCAAATTTCACCAAGTATAGCTCATGTTACGCATGACTATTCAGTAATGCTCTGTTGCCCTTTACGTACAATATAGCGACTGGTTGATTTGCTAATTGATTTATTATTTTAATAGTTCATTACTTACATTTTAATT------GTACCT-TTTCATTTTAACCAAGTATTTCCTGAGCATCGCATTGCAAGCTCCAATATAGACGAAGAGGATGACTCTGGTTATATAATGTGGTTTGCTTGTATTTGTCTTGTGCTTGGAT-TCATGTGTGTTGTTTCCTTTTGGTTTCACATTTGTTTACATTT--ATCTTCCCTCTAAGTTTGC-CCCCTTGTGGACTTACCTTTTGGTGTTGATTAAATAATTTCAGT-GTACCTTTTA---ATTTTCGGATGTCCACAAATGA-----T-ATT----CAATGAAATTGTTCGTTGTATAGTCGAGCGTAATGTCCTTGATAG------CTCTTGTATTA-TGTATTCTCAATGCGCATTTGTTTCATTT-ATTGTACACGTGGGACAAGCTCCCC-AGCGGGTAT-TTC------TGGAGATTAGCCGTGAAGAAGCTGACTGCCTTGTGT--TAT----------------------ATA--TATTT-TAATCTG---CAAAGTGCTTAGTAT--CAATC-G----AAAGACA-----ATGTTATGAACTTTAGATAATGATGATATGAA-GA-CA------T------ACATGGGCATTATCAGCTTTCATCACTAGCGTGAATTCAGATTCAAGTTAGTGGTTCATGCGGGGCAGTCAGGTTTTGTTCCCTATTGCCAACCGAAAGTCAATGTt
gi|30 : gtctgG-ACTTTCAAAATCCTCAGTATA-ATCGTTACCGG--AAGTCGAA
gi|4 : gTCAAAAGTA-AACAATCTATTG-AA-AGGCAAATATCTAAGAAAGATAACG-TAAGAAGTAAAATTCCGCCAATACCAGTAACCGTCCAT--------------AATTT-TTTTT------------TTAA-AACTATGAA-CCAACAGG-AATCATAAAATACA-AGGCCCTGGACACAAAATACAGACAT--ATACACA--G----------CACAAGCAAACACTA---AATA-AC-CATCGTAAAAAGACACCACAAACATTA---AATAA
gi|4 : cACAAGCAAACAC-TAA-ATA-A--CCAT---CGTAAAA---AGACA-CCACAAACATTAAATAANNNNNNNNNNACAAACACTA---AATA-AC-CATCGTAAAAAGACACCACAAACACTA---AATAAGCTGGCCGGAGCCTCGGAGT-GAA--ATG-AAAGCGGCAACAGGGGATTTAATTTGAAACCTTGTTTAAGATGCACAAAACCTCACTTTTAnnnnnnnnnnacaaacactaaataaccatcgtaaaaagacaccacaaacactaaataagctggccggagcctcggagtgaaatgaaagcggcaacaggggatttaatttgaaaccttgtttaagatgcacaaaacctcacttttagaatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttccggtgaactatcacaaatacaagctgaaagttgtcatgtttgtaacaggagagtttgaccaatactaactcttagaagacatgtttttttatgattactagaacagacggacgacatgacttaaaaaaatagacatcttctatggtatatgtgatagacatgaattgcaaacgttattttatgggggtcactttttcacaggaggaatctatatataaac
gi|4 : ctcaaaagtaaacaatctattgaaaggcaaatatctaagaaagataacgtaagaagtaaaattccgccaataccagtaaccgtccataattttttttttaaaactatgaaccaacaggaatcataaaatacaaggccctggacacaaaatacagacatatacacagcCTATCACAAATACAAGCT--GAAA-G--TTGTCATGTTTGTAACAGGAGAGTTTGACCAATACTAACTCTTAGAAGACATGTTTTTTTATGATTACTA---------------GAACAGACGGACGACAT-----GACTTAAAA-AAATAGACATCTTCTATGGTATAT-G-TGATAG--ACATGAATTGCAAA-------CGTTATT---------TTAT-GG-GGG-TCACTTTTTCACA--------------------GG----------AGGAATC-gaatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttccggtgaactatcacaaatacaagctgaaagttgtcatgtttgtaacaggagagtttgaccaatactaactcttagaagacatgtttttttatgattactagaacagacggacgacatgacttaaaaaaatagacatcttctatggtatatgtgatagacatgaattgcaaacgttattttatgggggtcactttttcacaggaggaatctatatataaac
gi|5 : ctcaaaagtaaacaatctattgaaaggcaaatatctaagaaagataacgtaagaagtaaaattccgccaataccagtaaccgtccataattttttttttaaaactatgaaccaacaggaatcataaaatacaaggccctggacacaaaatacagacatatacacagcacaagcaaacactaaataaccatcgtaaaaagacaccacaaacattaaataannnnnnnnnnacaaacactaaataaccatcgtaaaaagacaccacaaacactaaataagctggccggagcctcggagtgaaatgaaagcggcaacaggggatttaatttgaaaccttgtttaagatgcacaaaacctcacttttagaatttgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttccggtgaaATA-AC-CAGAGTAAAAATACACCACAAACATTA---TATAAGCTGGCCGGA-----TGGGT-CAA--TTGCCAGACGGCAACAGGC------ATTTGA---------------------AACTTCAC------------CTTAAAATAAGAAATTGCCATAT----------AACCTTTTTATA----C---TGTACA----ACAAAAG-GCTC------TCA----ACGAGCAC--TTT-TTTTCTG-------------------TCAAGAGACTGTCACG-------------------TACGTTTA------TGTCCGTGTTTT-ATC---TGG-GT-CCCTCTCGCACCTGCAAACAATTCCCGAAGAACTA-TGGCTCTTCCATCACAAATACAAGCT--GAAAAG--TCGTTATATTTGTAACATGAGAGTCTAACCAAGTCTTCCTGTAAGAAGACATG---TTTTATGACTACTAGACAACCAGACGGGCGAACATACGGACGGTCT-----AACTTATAA-CAATATACATCTTCTATG--ATGT-G-CGATAG--ACACGAGTTGCGAATAGG---CGTTA-----------TTAT-AGTGGG-TCACTTTTTCACA--------------------GG----------AGG-------------------GTGTGAGGTGTCGTTATTTTT-ACAGCAATTTGTGACC--GTGAGCCCGGGTCATTTTTAAACGTCTAATAATTACCG-G-GGGTCATATTCTGtatatataaac
gi|6 : GCCGGA-----AGGGTACCGCTTTGC--AACGGCAACCTTGGT----ATTTAAAACCTTGTTTAAGGAGCACTTAACCTTACTTTAACCC-CTTCTTAGTACCAGAAATTGTGATATCTTTTTCACCAACATTTTCTTAA--ACCATTGCACATTCTACTTAGT-ATTCAGGCTCTTACAAAATGAATACCTTTT-TTT-CTG-------------------CCATGAAGCTATCACA-------------------CTGGTTTA-CAACGTGTCCGTGTTTTTATC---CGG-GTGTCCCCTCATACCTGCAAACAATTCCTGCAGATCAA-TTGCTCTTCC-TCATAAATACAAGCT--GAAATG--TCGTCATACTTGTAAGACGAAAATCTAATCAATTTATCCTCTGATAAAACATA---TTTTGTGACTA-TCGACGATCGGACGGACGAACAGACGGACGACCT-----AACTTGAAG-CAATACACTTTTTC-------TGT-G-GGATAG--ACATAAATTGCAAACAGAGATCATTATT---------TTAT-AG-GGG-TGACTTTTTTACA--------------------GG----------AGGGGTC-A---T-TTATTTACGCGAAGTGTGTCGTTATTTTT-AAAGAAATTTGTGACC--G---G----GGTGATTTTCAAACGTCAACTAATGACTG-T-GGA-CATTTTATGacgggaaataaagatcgggggtaatatctgaggtgggagtgg
gi|7 : CAAGTGGGTAAAGCTCCAC-AGCAAGTAC-AAT------TGGAGATCAGCTATAAAGGAGCTGATTGCTTTGCATTATATTTCTGTAATCGGCGACAAAGTGATAAGT-ATTCTAGTATGCTACAAAATGCTTAGTAT-G-AAGC-G----AAATGTA-----ATTTCGT-AACTTTTAATAATGGTGATTTG-ACGA-CA------TTATGATACATGGGCATTATCAGCTT-CATGTCTAACGTGAATTCAGATT--AGTT----GTTCATTCGGAACATTCAAATTTTGATCCCCATCGCCAACCAAAATCAAATATTTTCCTAAATAC---------CACCTGTGATTTTATTGGC-ATT-------T--CACGCCGTTGTTT-ATTACCAGTATCGTATTAAGT-CGGCC----AAT---CT------TTCA-CAG----GCT-----------------TTT-CAGTTTA-CCGTAAACGACCGACATCTGC--TACAACAAACAACTAGT-----------------------TAG---GATCAACACAA--GACAA---TATAATATATGTAGTACTATAT--C---CCT-TC----T-TCA------TAGTGTA-AGGC---A-----CCGGTGGACGACTCCCAGG----------------AAGT-ACTATAGGATAAAATA----Tacgtgaa
gi|8 : GGTGTACCAAACCTCACTTTTACCCTCCTCTTAAAATCAAACATTGCCACAT----------AATCTCTTAAAAACCAC---TGCCCACCATATATAAG-GCTCGAGTTCTCACATAACGAACGC--AATATTT-CTGCCAAGAAGCTATCACGCAGTCAAGAAGCTATCACGCAGTCAAGAAGCTATCACGCAGGTTTA-CAATATGTCCCTG-TTTTATC---TAT-TTGCCCTCTCGTACCTGC-AACAATTCCCGGAGAACCA-AGGCTTTCCAATCACAAATACAAGCT----AAAG--TCGTCATATTTATA-------------ACTAATTCCTCCTCTTCGAATACATG---TTTTATGACTACCTAACAATCAGACGGACGAA------------TT-----AACTTAAAA-CAATAGCCATCTTCTA-G--AAATCG-GGATAG--ATATGAATTGCGAATATGGGTCATTATT---------TTAT-AG-GGG-TCACTTTTCC-------------------------------------------------------ACGCGTAGAATTTCGTTA----------------GTAACC--G---GG---GGTCAT------------AATAATGACCA-T-GGATCACTTTCTatag
gi|9 : TTTT------------AAAACTA-TAT---GATCAGCATGA--GTCAA---TATAATAAATATAGAACTACCTGGC---ACA-TCCTGTT-TTA------CA-CATATAGAG---T-----TTA--GCAC----CGCTGCAA------A-------AAATTCCTGGAAGGCTCAATA----TGTACTAT-AGGGTCCTTG-TACA---------GGGTTAACCCGAATCCAGAACTTCTGGAT-ATTGAGCCCATCAACATAAATACTAGA-CAGAAATCTACAGATCCG-T-G----------------------A-TTTTCGTCTAATGGA--AGTGCAATCAC-CCGTGTTA-GTATTTAGTGACATAACAATTATAGTGTCTCTGTGACAAAGTGGTTAAGATTTCTCT--------------TCACTATCCTATTACTATATGGTACTAAAATAGAACCATCGATTCAAAACTATA-CGAAC-TTCGAAA-AGGTAATGATCTGACACAGATC-GGCTG---------ATTCTAACAG----G------------AGAAGCTTACG-GGAGTC---TCCTC---AACAGAAGTAAACAAATATGAAACCAACCAG-AAACTT-TAACACACAGGctgaggatttaatgaccagggatcaatttgt