lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 33333333333 1111 1111 6666666666666666666 111 1111 55555555555555555555555 3333333333333 3333333 333333333333333333333333333333333333333333333 1111 1 1 1 1 222 11 11 55555555555555555555 44444444444 333 22 22222 2222222
lowQualScore : 3 1 33 9 6 3 7 1 66666666666 0 1111 3333 1111111111111111111 333 8 0 9999 44 5 99 88888888888888888888888 7 6 1 5555555555555 6 77 5 4444444 5 2 222222222222222222222222222222222222222222222 77 222 1 7777 6 8 777 6 0 2 6 8 8 66 0 4 444 1 2 44 5 2 33 88888888888888888888 3 6 2 11111111111 8 8 000 1 33 99 0 3 66666 4 77 3333333 1
lowQualScore : . . .. . . . . . ........... . .... .... ................... ... . . .... .. . .. ....................... . . . ............. . .. . ....... . . ............................................. .. ... . .... . . ... . . . . . . .. . . ... . . .. . . .. .................... . . . ........... . . ... . .. .. . . ..... . .. ....... .
lowQualScore : 7 0 88 2 7 7 2 0 55555555555 8 6666 0000 4444444444444444444 888 0 8 4444 00 0 77 33333333333333333333333 5 7 6 3333333333333 0 99 7 7777777 4 2 111111111111111111111111111111111111111111111 44 444 8 0000 0 0 444 6 0 8 2 0 0 44 4 0 222 0 5 00 2 5 55 55555555555555555555 0 7 8 99999999999 0 0 222 0 77 22 3 0 44444 2 99 3333333 7
consensus : GAAACTTGNTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACCCCNACTATCGATGACAAAATCTT--N----CAC-GTCTTCCCACGTCTT--AAGT-TTGAAATCCAAT--GGGGG-GAGGTTCACGT-TTTTTTCTTT-TTAT-NCATATATCTTATA-NTTTTTCTC-C--------------AA---GTTTTTCACGT-----T-------GTGTGTGACAGTGT--GTTTAA-TAAA------TAACTGTTAAAA--C-CATT-G----AAT-AACAA-CGTTATTTTA-CTT-AAAAATGAATGCAGCGATTGGTCT----TATA-AAAACAAATCCGAATGAAGCCTCTCATTCCTCCATCAGC-GG-GAGGGATTGTCANTATCACATTCTCNCCC-ACGNCATNGTTTTCAGTACATAAGGTNACGGTT-CT-AA-----A-CT----CTTTNGA-TGTTTT-----AG-GTTT-T-TGGCGCGTGANTGCGTACGTATGT--GCGTGCGTCCGTGCGTGT-TTNTGTGCGTNCGTGCATGCGTGCA--TGT--G----TGCGTGCGTGTGTT
Reference ( gi|1 ) : GAAATTTGCTTTAAAGGTCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACGCCCACTATCGATGACAAAATATT--T----CA--GTCTTCCCACGTCAT--AAGT-TTGAAA---AAT--GGGGACGAAATTCACGT-TTTTTTCTTT-CTAT-TCATATATCTGATA-TTTTTTCTCAC--------------AA---GTCTTTCACTT-----T-------ATGTGTGGCAGTGT--GTTTAA-TAAA------TAAATATTAAAA--CGTATT-G----AATGAACAA-CATTATTTTACCTTGAAAAAGGAATGCAGCAATTGGTTT----TATA-AAAACAAATCCGAATGTGGCTTCTCATTCCCCCAACAGC-GG-AAGGGATTGTCAATATCAAAGTCTCCCCA-ACGGCATGGTTTTCAGTACATAAGGTAACGGTT-TT-AA-----G-CT----ATTTTGA-TATTTT-----AG-GTCT-T-TGGCGCGTCCGTGCGAACGTATGT--GTGTGTGTCCGTGCGTGT-TACTGTGCGTACGTGCATGCGTACA--TGT--A----TGCGTACGTGTGTT
gi|3 : GAAATTTGTTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAA--TTTATTCCCGTACCCCGACTATCGATGACAACATCTT--C----CACAGTCTTCCCACGTCTT--AAGTATTGAAATCCGAT--GGAGG-----TTCACGT-TTTTTTATTT-CTAT-ACATATATTTTACA-GTTTTTCTCCC--------------AA---GTTTTTCACTT-----TCCACTTTATGTGTGACAGTGT--GTTAAA-TAAA-------AACTATTAAAA--C-----------------------TTATT----------AAATGAATGCAGCA------CT----TATA-AAAACAAATCCGAATAGGTCCTCTCATTGCTCCACCAGCGGG-AAGGGA-TGTCACTTTCACATTCTCACCC-ACGTCATTGTTTTCAGTACATAAGGTTACAGTT-CTAAA-----A-CT----CTTTGGA-TGTTTT-----AGTTTTT-T-TGGTGCAGGATTGCGTTTGTATAC--GTGTTTGTCCGTGCGTAT-TTGTGTGCGTTTGTGCATGCGTACA--TGT--G----TGTGTGCGTGTGTT
gi|10 : AAACTTGCTTTAAAGGTCATAAGCAATGCAAATACATGCATGTAG--TTTATTCCCGTACCCCAACTATCAATAACAAAATCTC--A----CACTGTCTT
gi|4 : TGATTTAAAGGCCATACGCAATGCCAATAAATGCATGTAG--TTTATTCAAGTACCCCCATTATAGATGACAAAATCTTACA----CA--GTCTTCTCACGTCTT--AAGT-TT--AA---AAT--CGGGTAGAGGTTCACGT-TTTTTTCTTC-CTAT-TCATATATATGATA-GATTTTCTCCC--------------AAGTTGTTTTTCACTT-----T-------ATGTGTGACAGTGTTATTTTAA-AAAC------TGAAT
gi|14 : cGTATGTAGCATTTACTTTTATAT-----TTATCGATGACAAAATCTT--T----CACAGTCTTCCCACGTCAT--AAgcagcgattgatgttttaaaaacaaatccgaatgaagagtctcattcctccatcagcgggaagggatgtcaatatcaaaattcacccacggcattgttatcagtacataaggttacggttcaaaaactctttggatgttttagtttttggtgcgtgattgcgtacgtatgtgtgtgtgtccgtgcgtgtttttgtgcgttcgtacatgtgtacagttgtacatgtgtgcgggtgttaa
gi|8 : TCCTGTACCCAAACCAGCAATGACAA--TATT--TACCACA--GTCTCCCCATGTTTC--GGAT-TTGAAATCCAGT--AGAGG-----TTCAC-T-TTTTTTCTTT-TTAT-----ACATCTTATAATTCCCCCCCACCCCCACCCCCCTCTAA---GTTTTCCTCAT-----T-------GTGTGTAACAGTGT--GTTTAA-TAAAAACAATTAAATGTCATAA--CTTATT-G----AATGAACAACCATTTTTTCATCTT
gi|2 : cTTCCGTTTCCCCACTAGC-ATAAAACCATCTT--C----CA--GTCTCTCC-CGTGATTTGAGT-T--AAA---AATCCGGGGATGGGG-----GTATCTTTTCTTTGTTACATCATATA---GATA-TTTTTTCT-----------------AA---GTTTTT-ACGTG----T-------GTGTGTGACAGTGT--GTTTAA-TAA
gi|5 : aagaaacatttgttttcaagtcataaaaaatttgggggagaccGAGGTTCAC---TTTTTTCTTT-TT-T-GC-TACATCTTATA-GCTTTTC-CGT--------------AAA--GTGTTTCGTTT-----TT------ATGTGTGACAATGT--GCTTAAATAAA-------AACTGTTAAAAGTCACATTTGTTTTAATTAACAA-C--CATTTT-----------------------TTCATCT----TAAA-AAAAC---TCCGAGTGAAGCCGTCCATTCCTCTACCAGC-GG-GAAGGGGTGTCACTGTCACATTCTCCCCT-ATGTCCTGATTTCCAGAGCATAAGGT-CCGGTT-CT-AAAACCCG-TTGGAGATTCTTT-TTTTTTTTGAGGG-GGCTGT-TGTCATGTCCGTATG--TGTTTGT--GAGAGCATACATGCGTG-----CGTGCGTATGTGCTTGCGTGCA--TCT--G----TGTGTATGTGTGTTtgctttcaaagtcacaatattatatattatttaagtaacagccgtttttctcaatctaatatctcctttatatcttgcaataggttaagaatatataaaacattctgagcgaagcatcccataccccaatcagtgcgagaggttgtcacattttcccatgtgacctggtttcctgtatatttggtgcagttttttgtgagtatttttttcgggtatggaacgtctgtgcatgtgtgcgtgtgtacttgcgtgcgtgtgctaaataaaaaaaatatagta
gi|6 : ccggtg-TTTTTTCT-----------------AA---GTTTTT-ACGTGTGTGT-------GTGTGTGACAGTGT--GTTTAA-TAAA------TAgcgtgtatgtacatgcgagtgggcgtgttt
gi|16 : TT-----T-------ATGTGTGACAGTGT--GCCTAA-TAAA-------AACTGTTAAAA--cctttaaagtcacaatattatatattatttaagtaacagtcgtgttgtcatcctaatatttcctttgtatctagcaaaaggttaagaatatatatagcattctgagcgaggcatcccataccccaatcagtgcgagaggaagtcacattttcccatgcgacctggtttcctgtatattttgttcagttttgtgtgtgtatttttttcgggtacggatcgt
gi|4 : tACAG-TGTTATTTTA-----AAAACTGAATGCAGCGATTGATGT----TTTA-AAAACAAATCCGAATGAAGAGTCTCATTCCTCCATCAGC-GGGAAGGGAT-GTCAATATCAAAAT-TCACCC-ACGGCATTGTTATCAGTACATAAGGTTACGGTT-CA-AA-----AACT----CTTTGGA-TGTTTT-----AG--TTT-T-TGGTGCGTGATTGCGTACGTATGT--GTGTGTGTCCGTGCGTGT-TTTTGTGCGTTCGTACATGTGTACAGTTGTACA----TGTGTGCGGGTGTTgtc
gi|7 : ctgatttaaaggccatacgcaatgccaataaatgcatgtagtttattcaagtacccccattatagatgacaaaatcttacacagtcttctcacgtcttaagtttaaaatcgggtagaggttcacgtttttttcttcctattcatatatatgatagattttctcccaagttgtttttcactttatgtgtgCTTAAAAAATGAATGCAGCGATTGGTTT----T-CA-AAAACAAATCTGAATGAGGCCTCTCATTTCTCCATCAGC-GG-GAGGAATTGTCAATATCACACTCTCACCC-ACGGCATTGTTTTCAGTACATAAGGTAACGGTT-CTAAA-----A-CT----CTTTGGA-TG-TGT-----AA-GTTT-TATGGTGCGTAATTGCGTACGTATTT--GTGTGTGTCCGTGCGTGT-TTTTGTGCGTACGTGCATGCGTACA--TGT--G----TGCGTGCGAGTGCTaa
gi|2 : gtGCAATAGGTTAAGAATATATAAAACAT-TCTGAGCGAAGCATCCCATACCCCAATCAGT-GC-GAGAGGTTGTCA----CA---TTTTCCCATGTGACCTGGTTTCCTGTATATTTGGTG-CAGTT-TT-----------------TTGTGAGTATTTT-----------T-T-T--CGGGT--ATG-GAACGTCTGT--GCATGTGT----GCGTGTGTACT-TGCGTGCGTG
gi|13 : aagaaacatttgttttcaagtcataaaaaatttgggggagaccttccgtttccccactagcataaaaccatcttccagtctctcccgtgatttgagttaaaaatccggggatgggggtatcttttctttgttacatcatatagatattttttctaagtttttacgtgtgtgtgtgacagtgtgtttaataatgctttcaaagtcacaatattatatattatttaagtaacagccgtttttctcaatctaatatctcctttatatcttCCCCCCA-ACGTTATGGTTTTCAGTACATAAGGTAACGGTTATA-AA-----A-CT----GTTTTGA-TATTTT-----tgctaaataaaaaaaatatagta
gi|11 : acaGTGCG--CGTATGTTTGCGTGCGTTCGTGCGT---TCGTGTGCTTAAGTGCGTGCGTGTA--CGT--T----TCCGTACGTGTAT
gi|9 : TGTCCGTATGTGT-T--TGTGCGTGCATACATGCGTGCG--TGC--A----TATGTGCTTGCGT
gi|2 : tgttttgtttttggagggggctgttgtcaCGTCTGTGCATGTGTGCG--TGT--GTACTTGCGTGCGTGTGCTgcctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatgcgattgggcgtgtatt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TATCCTCCCAAACTAACAATAACAAAAATCAACAATCTCCTTACGTACCCGAATTTGAGAGCCAGGGTTC
Unaligned ( gi|15 ): CTCTGCATGTATGCGTGTCCGTACTAGCGTCTCGGTGTGTGTTAAAAAAAAACAGAGTA
Alignments
lowQualScore : 11 33 333333333333 1 55555555555555555555 111 2222222222222 3333333333333333333333333 999999999999999999999999999999999999999999999999999999999999999999999999999 111 111 11111 3333333 111111 111
lowQualScore : 0 1 11 3 1 1 1 22 5 8 0 999999999999 0 6 77 7 5 3 1 33333333333333333333 555 4 6 9999999999999 5 2222222222222222222222222 5 5 999999999999999999999999999999999999999999999999999999999999999999999999999 6 333 0 33 3 77 8 888 0 0 1 2 1 1 66 777 5 0 1 77777 0000000 666666 5 000 6 5 0 55 77 66 66 5 2 1 66 5 1 66 66
lowQualScore : . . .. . . . . .. . . . ............ . . .. . . . . .................... ... . . ............. . ......................... . . ........................................................................... . ... . .. . .. . ... . . . . . . .. ... . . . ..... ....... ...... . ... . . . .. .. .. .. . . . .. . . .. ..
lowQualScore : 7 0 00 0 7 6 0 99 7 0 8 111111111111 8 7 77 3 2 0 0 99999999999999999999 777 3 6 8888888888888 0 8888888888888888888888888 4 0 000000000000000000000000000000000000000000000000000000000000000000000000000 7 777 4 33 0 99 9 999 3 2 0 2 0 0 00 666 7 7 0 55555 1111111 444444 7 000 3 0 1 00 22 11 11 4 9 0 99 0 0 99 99
consensus : GAAATTTGCTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACCCCNACTATCGATGACAAAATCTTCCACAGTCT-TCCCACGTCTTAAGT-TTGAAATCCAATGGG---A-GAGGTTCACGTTTTTTTCTTT-CTATN-CATATATCTTATAGTTTTTCT-C-C----------------AA---GTTTTTCACTT-----T-------ATGTGTGACAGTGTGTTTAA-T----------AAA------TAAC--TGTTAAA-AC-TATTGAA-T-AACAGC---TT-ATTTT--ACTT--AAAA--------A-CGAATGCAGCGATTGGTCT-----TATA-AAAACAAATCCGAGTGAGGCCTCCCATTCCCCCATCAG--CGGGAGGGGNTGTCAATATCACATTCTCCCCCGCGNCATGGTTTTCAGTACATAAGGTNACGGTTC-TAAAA-CTCTTTGGA-----TGTTTT----AG-GTTT------T-TG---GTGC-GTGNNTGCGTNCGTATG--TGC--GTGCGTCCGTGCGTGTTTGTG--TGCG-TACGTGCATGCGTACA--TGT--GTGCGTGCGTGTGTT
Reference ( family-808 ) : GAAACTTGNTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACCCCNACTATCGATGACAAAATCTTNCAC-GTCT-TCCCACGTCTTAAGT-TTGAAATCCAATGGGG--G-GAGGTTCACGTTTTTTTCTTT-TTATN-CATATATCTTATANTTTTTCT-C-C----------------AA---GTTTTTCACGT-----T-------GTGTGTGACAGTGTGTTTAA-T----------AAA------TAAC--TGTTAAA-AC-CATTGAA-T-AACAAC-G-TT-ATTTT--ACTT--AAAA--------A-TGAATGCAGCGATTGGTCT-----TATA-AAAACAAATCCGAATGAAGCCTCTCATTCCTCCATCAG--CGGGAGGGATTGTCANTATCACATTCTCNCCCACGNCATNGTTTTCAGTACATAAGGTNACGGTTC-T-AAA-CTCTTTNGA-----TGTTTT----AG-GTTT------T-TG---GCGC-GTGANTGCGTACGTATG--TGC--GTGCGTCCGTGCGTGTTTNTG--TGCG-TNCGTGCATGCGTGCA--TGT--GTGCGTGCGTGTGTT
gi|1 : GAAATTTGCTTTAAAGGTCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACGCCCACTATCGATGACAAAATATTTCA--GTCT-TCCCACGTCATAAGT-TTGAAA---AATGGGG--ACGAAATTCACGTTTTTTTCTTT-CTATT-CATATATCTGATATTTTTTCT-CAC----------------AA---GTCTTTCACTT-----T-------ATGTGTGGCAGTGTGTTTAA-T----------AAA------TAAA--TATTAAA-ACGTATTGAA-TGAACAAC-A-TT-ATTTT--ACCTTGAAAA--------A-GGAATGCAGCAATTGGTTT-----TATA-AAAACAAATCCGAATGTGGCTTCTCATTCCCCCAACAG--CGGAAGGGATTGTCAATATCAAAGTCTCCCCAACGGCATGGTTTTCAGTACATAAGGTAACGGTTT-T-AAG-CTATTTTGA-----TATTTT----AG-GTCT------T-TG---GCGC-GTCCGTGCGAACGTATG--TGT--GTGTGTCCGTGCGTGTTACTG--TGCG-TACGTGCATGCGTACA--TGT--ATGCGTACGTGTGTT
gi|10 : AAACTTGCTTTAAAGGTCATAAGCAATGCAAATACATGCATGTAG--TTTATTCCCGTACCCCAACTATCAATAACAAAATCTCACACTGTCT-T
gi|11 : TGCG--CGTATGTTTGC--GTGCGTTCGTGC--GTTCGTG--TGCT-TAAGTGCGTGCGTGTA--CGT--TTCCGTACGTGTAT
gi|13 : gCCCCCCAACGTTATGGTTTTCAGTACATAAGGTAACGGTTA-TAAAA-CTGTTTTGA-----TATTTT----
gi|14 : acaGTATGTAGCATTTACTTTTATATT-----TATCGATGACAAAATCTTTCACAGTCT-TCCCACGTCATAA
gi|16 : T-----T-------ATGTGTGACAGTGTGCCTAA-T----------AAA-------AAC--TGTTAAA-A
gi|2 : ttTTCCGTTTCCCCACTAGC-ATAAAACCATCTTCCA--GTCTCTCCCGTGATTTGAGT-TAAAAATCC---GGGGATG-GGGGT--A---TCTTTTCTTTGTTACATCATATAG---ATATTTTTTCT--------------------AA---GTTTTT-ACGTG----T-------GTGTGTGACAGTGTGTTTAA-TAATGCTTTCAAAG------TCACAATATTATATAT-TATTTAAGT-AACAGCCG-TT-TTTCTCAATCT--AATATCTCCTTTA-T--ATCTTGCAATAGGT-TAAGAATATATAAAACAT-TCTGAGCGAAGCATCCCATACCCCAATCAG--TGCGAGAGGTTGTCA------CATTTTCCCATGTGACCTGGTTTCCTGTATATTTGGTG-CAGTTT-T--------TTGTGAG----TATTTTTTTCGG-GTATGGAACGT-CT---GTGC-ATGTGTGCGTGTGTACT--TGC--GTGCGT--GTGCgtc
gi|3 : aagaaacatttgttttcaagtcataaaaaatttgggggagaccGAAATTTGTTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAA--TTTATTCCCGTACCCCGACTATCGATGACAACATCTTCCACAGTCT-TCCCACGTCTTAAGTATTGAAATCCGATGG-------AGGTTCACGTTTTTTTATTT-CTATA-CATATATTTTACAGTTTTTCT-C-CC---------------AA---GTTTTTCACTT-----TCCACTTTATGTGTGACAGTGTGTTAAA-T----------AAA-------AAC--TATTAAA-AC--------------------TT-ATT------------AA--------A-TGAATGCAGCA------CT-----TATA-AAAACAAATCCGAATAGGTCCTCTCATTGCTCCACCAG--CGGGAAGGGATGTCACTTTCACATTCTCACCCACGTCATTGTTTTCAGTACATAAGGTTACAGTTC-TAAAA-CTCTTTGGA-----TGTTTT----AGTTTTT------T-TG---GTGC-AGGATTGCGTTTGTATA--CGT--GTTTGTCCGTGCGTATTTGTG--TGCG-TTTGTGCATGCGTACA--TGT--GTGTGTGCGTGTGTTtaaataaaaaaaatatagta
gi|4 : TGATTTAAAGGCCATACGCAATGCCAATAAATGCATGTAG--TTTATTCAAGTACCCCCATTATAGATGACAAAATCTTACACAGTCT-TCTCACGTCTTAAGT-TTAAAATC----GGGT--A-GAGGTTCACGTTTTTTTCTTC-CTATT-CATATATATGATAGATTTTCTCC-C----------------AAGTTGTTTTTCACTT-----T-------ATGTGTGACAGTG---TTA----------------------------TTTTAAA-A---ACTGAA-T--GCAGC-GATTGATGTT----TT--AAAA--------A-CAAAT-C--CGA-------------ATG-AA---------GAGT-------CTCATTCCTCCATCAG--CGGGAAGGGATGTCAATATCAAAAT-TCACCCACGGCATTGTTATCAGTACATAAGGTTACGGTTCAA-AAA-CTCTTTGGA-----TGTTTT----A--GTTT------T-TG---GTGC-GTGATTGCGTACGTATG--TGT--GTGTGTCCGTGCGTGTTTTTG--TGCG-TTCGTACATGTGTACAGTTGTACATGTGTGCGGGTGTT
gi|5 : cGGT--G-GAGGTTCAC--TTTTTTCTTT-TT-TG-C-TACATCTTATAGCTTTTCC-G-T----------------AAA--GTGTTTCGTTT-----TT------ATGTGTGACAATGTGCTTAAAT----------AAA-------AAC--TGTTAAA-A--------G-T-CACA---T-TT-GTTTT--AATT--AACA--------A-C-----CATTTTTTCATCT-----TAAA-AAAAC---TCCGAGTGAAGCCGTCCATTCCTCTACCAG--CGGGAAGGGGTGTCACTGTCACATTCTCCCCTATGTCCTGATTTCCAGAGCATAAGGTC-CGGTTC-T-AAAACCCGTTGGAGATTCTTTTTT--------TTT------T-TGAGGGGGCTGTTGTCATGTCCGTATG--TGTTTGTGAGAGCATACATGCGTGCG--TGCG-TATGTGCTTGCGTGCA--TCT--GTGTGTATGTGTGTTaa
gi|5 : ccC-ATGCGTGCGTGCGTATG--TGC--TTGCGTGCATCTGTGTGTATG--TGTGTTGCGTGTAT--GTACA--TGC--GAGTGGGCGTGTgcgtgtatgtacatgcgagtgggcgtgttt
gi|6 : ccggtggaggttcacttttttcttttttgctacatcttatagcttttccgtaaagtgtttcgtttttatgtgtgacaatgtgcttaaataaaaactgttaaaagtcacatttgttttaattaacaaccattttttcatcttaaaaaaactccgagtgaagccgtccattcctctaccagcgggaaggggtgtcactgtcacattctcccctatgtcctgatttccagagcataaggtccggttctaaaacccgttggagattctttttttttttgagggggctgttgtcatgtccgtatgtgtttgtgagagcataTTTTTT-C-T----------------AA---GTTTTT-ACGTGTGTGT-------GTGTGTGACAGTGTGTTTAA-T----------AAA------TACC--T-TTAAA-GT-CAC--AA-T-ATTA------T-ATATT--ATTT--AAtt
gi|6 : TCTGAGCGAGGCATCCCATACCCCAATCAGTGCGAGAGGAA--------GTCACATTTTCCCATGCGACCTGGTTTCCTGTATATgtaacagtcgtgttgtcatcctaatatttcctttgtatctagcaaaaggttaagaatatatatagcattctgagcgaggcatcccataccccaatcagtgcgagaggaagtcacattttcccatgcgacctggtttcctgtatattttgttcagttttgtgtgtgtatttttttcgggtacggatcgt
gi|7 : ttttttctaagtttttacgtgtgtgtgtgtgtgacagtgtgtttaataaatacctttaaagtcacaatattatatattatttaagtaacagtcgtgttgtcatcctaatatttcctttgtatctagcaaaaggttaagaatatatatagcatCTT--AAAA--------AATGAATGCAGCGATTGGTTT-----T-CA-AAAACAAATCTGAATGAGGCCTCTCATTTCTCCATCAG--CGGGAGGAATTGTCAATATCACACTCTCACCCACGGCATTGTTTTCAGTACATAAGGTAACGGTTC-TAAAA-CTCTTTGGA-----TG-TGT----AA-GTTT------TATG---GTGC-GTAATTGCGTACGTATT--TGT--GTGTGTCCGTGCGTGTTTTTG--TGCG-TACGTGCATGCGTACA--TGT--GTGCGTGCGAGTGCTtttgttcagttttgtgtgtgtatttttttcgggtacggatcgt
gi|8 : gtTCCTGTACCCAAACCAGCAATGACAATATTTACCACAGTCT-CCCCATGTTTCGGAT-TTGAAATCCAGT------A-GAGGTTCAC-TTTTTTTCTTT-TTATA-C----ATCTTATAATTCCCCC-C-CACCCCCACCCCCCTCTAA---GTTTTCCTCAT-----T-------GTGTGTAACAGTGTGTTTAA-T----------AAAAACAATTAAA--TGTCATA-ACTTATTGAA-TGAACAAC----C-ATTTT--
gi|9 : c-----TGTTTT-------GTTT------T-TG---GAGG-G-GGCTGT-------TG--T-C--ATG--TCCGTATGTGTTTGTGCGTGCA-TACATGCGTGCGTGCA--TAT--GTGCTTGCGTGttcatctt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATCCTCCCAAACTAACAATAACAAAAATCAACAATCTCCTTACGTACCCGAATTTGAGAGCCAGGGTTC
Unaligned ( gi|15 ): CTCTGCATGTATGCGTGTCCGTACTAGCGTCTCGGTGTGTGTTAAAAAAAAACAGAGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 33333333333 1 111 444444444444444444 111 2222222222222 1111 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 222222222222 11111 2222 111 2222222222222
lowQualScore : 0 11 3 1 1 1 55 5 8 0 88888888888 888 7 3 1 000 5 666666666666666666 555 4 0 9999999999999 0000 5 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 5 666666666666 0 2 0 3 1 999 0 0 44 1 66 3 1 22222 5555 5 000 4444444444444 5 22 44 66 66 1 2 0 999 77 77
lowQualScore : . .. . . . . .. . . . ........... ... . . . ... . .................. ... . . ............. .... . .................................................................................................................................. . . ............ . . . . . ... . . .. . .. . . ..... .... . ... ............. . .. .. .. .. . . . ... .. ..
lowQualScore : 2 00 0 7 6 7 99 7 0 8 66666666666 333 3 3 3 222 7 111111111111111111 777 3 2 8888888888888 6666 0 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 4 7 777777777777 4 3 3 0 0 999 3 2 22 0 00 0 4 55555 0000 7 000 0000000000000 0 00 88 11 11 7 9 1 222 99 99
consensus : GAAATTTGCTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACCCCNACTATCGATGACAAAATCTTCCACAGTCT-TCCCACGTCTTAAGT-TTGAAATCCGATGGG-A--GAGGTTCACGT-TTTTTTCTTTCTATNCATATATCTTATAG-T-TTTTCT-C-C----------------AA---GTTTTTCACTT-----T-------ATGTGTGACAGTGTGTTT----AA-TA-------A-------------A------TAAC--TGTTA-AA-AC-TATTGAA-T-AACAG-C--TT-GTT-TTA-CTT--AAAAA-C------GAATG-------CA------GCGATTGGTCT-----TATA-AAAACAAAT--------CCGAGCGAGGCCTCCCATTCCCCCATCAGCGGGAGGGGNTGTCAATATCACATTCTCCCCCGCGNCATGGTTTTCAGTACATAAGGTNACGGTTCTAAAACTCTTTGGA-----TGTTTTA--GTTTT-TG---G----------TG-C-GTGNNTGCGTACGTATG--TGC--GTGCGTNCGTGCGTGTTTGCGTGCGT-ACGTGCATGCGTACA--TGT--GTGCGTGCGTGTGTT
Reference ( family-808 ) : GAAATTTGCTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACCCCNACTATCGATGACAAAATCTTCCACAGTCT-TCCCACGTCTTAAGT-TTGAAATCCAATGGG-A--GAGGTTCACGT-TTTTTTCTTTCTATNCATATATCTTATAG-T-TTTTCT-C-C----------------AA---GTTTTTCACTT-----T-------ATGTGTGACAGTGTGTTT----AA-TA-------A-------------A------TAAC--TGTTA-AA-AC-TATTGAA-T-AACAG-C--TT-ATT-TTA-CTT--AAAAA-C------GAATG-------CA------GCGATTGGTCT-----TATA-AAAACAAAT--------CCGAGTGAGGCCTCCCATTCCCCCATCAGCGGGAGGGGNTGTCAATATCACATTCTCCCCCGCGNCATGGTTTTCAGTACATAAGGTNACGGTTCTAAAACTCTTTGGA-----TGTTTTAG-GTTTT-TG---G----------TG-C-GTGNNTGCGTNCGTATG--TGC--GTGCGTCCGTGCGTGTTTGTGTGCGT-ACGTGCATGCGTACA--TGT--GTGCGTGCGTGTGTT
gi|1 : GAAATTTGCTTTAAAGGTCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACGCCCACTATCGATGACAAAATATTTCA--GTCT-TCCCACGTCATAAGT-TTGAAA---AATGGG-GACGAAATTCACGT-TTTTTTCTTTCTATTCATATATCTGATAT-T-TTTTCT-CAC----------------AA---GTCTTTCACTT-----T-------ATGTGTGGCAGTGTGTTT----AA-TA-------A-------------A------TAAA--TATTA-AA-ACGTATTGAA-TGAACAA-CA-TT-ATT-TTA-CCTTGAAAAA-G------GAATG-------CA------GCAATTGGTTT-----TATA-AAAACAAAT--------CCGAATGTGGCTTCTCATTCCCCCAACAGCGGAAGGGATTGTCAATATCAAAGTCTCCCCAACGGCATGGTTTTCAGTACATAAGGTAACGGTTTT-AAGCTATTTTGA-----TATTTTAG-GTCTT-TG---G----------CG-C-GTCCGTGCGAACGTATG--TGT--GTGTGTCCGTGCGTGTTACTGTGCGT-ACGTGCATGCGTACA--TGT--ATGCGTACGTGTGTT
gi|10 : AAACTTGCTTTAAAGGTCATAAGCAATGCAAATACATGCATGTAG--TTTATTCCCGTACCCCAACTATCAATAACAAAATCTCACACTGTCT-T
gi|11 : TGCG--CGTATGTTTGC--GTGCGTTCGTGC--GTTCGTGTGCTT-AAGTGCGTGCGTGTA--CGT--TTCCGTACGTGTAT
gi|13 : gCCCCCCAACGTTATGGTTTTCAGTACATAAGGTAACGGTTATAAAACTGTTTTGA-----TATTTT
gi|14 : acaGTATGTAGCATTTACTTTTATATT-----TATCGATGACAAAATCTTTCACAGTCT-TCCCACGTCATAA
gi|16 : TT-----T-------ATGTGTGACAGTGTGCCT----AA-TA-------A-------------A-------AAC--TGTTA-AA-A
gi|2 : tTTCCGTTTCCCCACTAGC-ATAAAACCATCTTCCA--GTCTCTCCCGTGATTTGAGT-TAAAAATCCG--GGG-AT-GGGG-----GTATCTTTTCTTTGT-----TACATCATATAGATATTTTTT-C-T----------------AA---GTTTTT-ACGTG----T-------GTGTGTGACAGTGTGTTT----AA-TA-------ATGCTTTCAAAGTCA------CAA---TATTATAT-AT-TATTTAAGT-AACAG-C---C-GTT-TTT-CTC----AAT-C------TAATATCTCCTTTATATCTTGCAATAGGT-TAAGAATATATAAAAC-ATT--------CTGAGCGAAGCATCCCATACCCCAATCAGTGCGAGAGGTTG------TCACATTTTCCCATGTGACCTGGTTTCCTGTATATTTGGTG-CAGTT------TTTTGTGAG-----TATTT-----TTTT-CG---G-----------------GTATG-GAACGTCTG--TGC--ATGTGTGCGTGTGTACTTGCGTGCGT---GTGCgtc
gi|3 : aagaaacatttgttttcaagtcataaaaaatttgggggagaccGAAATTTGTTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAA--TTTATTCCCGTACCCCGACTATCGATGACAACATCTTCCACAGTCT-TCCCACGTCTTAAGTATTGAAATCCGATGG------AGGTTCACGT-TTTTTTATTTCTATACATATATTTTACAG-T-TTTTCT-C-CC---------------AA---GTTTTTCACTT-----TCCACTTTATGTGTGACAGTGTGTTA----AA-TA-------A-------------A-------AAC--TATTA-AA-AC-T-------------------T-ATT------------AAA-T------GAATG-------CA------GCA------CT-----TATA-AAAACAAAT--------CCGAATAGGTCCTCTCATTGCTCCACCAGCGGGAAGGGATGTCACTTTCACATTCTCACCCACGTCATTGTTTTCAGTACATAAGGTTACAGTTCTAAAACTCTTTGGA-----TGTTTTAGTTTTTT-TG---G----------TG-C-AGGATTGCGTTTGTATA--CGT--GTTTGTCCGTGCGTATTTGTGTGCGT-TTGTGCATGCGTACA--TGT--GTGTGTGCGTGTGTTtaaataaaaaaaatatagta
gi|4 : TGATTTAAAGGCCATACGCAATGCCAATAAATGCATGTAG--TTTATTCAAGTACCCCCATTATAGATGACAAAATCTTACACAGTCT-TCTCACGTCTTAAGT-TTAAAATC----GGGTA--GAGGTTCACGT-TTTTTTCTTCCTATTCATATATATGATAG-A-TTTTCTCC-C----------------AAGTTGTTTTTCACTT-----T-------ATGTGTGACAGTG---TT----A--------------------------------------TTTTA-AA-A---ACTGAA-T--GCAG-CGATTGATG-TT---TT--AAAAA-C------AAAT--------C--------CGA-------------ATG-AA-----------------GAG-------TCTCATTCCTCCATCAGCGGGAAGGGATGTCAATATCAAAAT-TCACCCACGGCATTGTTATCAGTACATAAGGTTACGGTTCAAAAACTCTTTGGA-----TGTTTTA--GTTTT-TG---G----------TG-C-GTGATTGCGTACGTATG--TGT--GTGTGTCCGTGCGTGTTTTTGTGCGT-TCGTACATGTGTACAGTTGTACATGTGTGCGGGTGTT
gi|5 : c--GAGGTTCAC---TTTTTTCTTTTT-TGC-TACATCTTATAG-C-TTTTCC-G-T----------------AAA--GTGTTTCGTTT-----TT------ATGTGTGACAATGTGCTT----AAATA-------A-------------A-------AAC--TGTTA-AA-A--------G-T-CACA--T--TT-GTT-TTA-ATT--AACAA-C------------------CA------TTTTTTCATCT-----TAAA-AAAAC---T--------CCGAGTGAAGCCGTCCATTCCTCTACCAGCGGGAAGGGGTGTCACTGTCACATTCTCCCCTATGTCCTGATTTCCAGAGCATAAGGTC-CGGTTCTAAAACCCGTTGGAGATTCTTTTTT----TTTT-TGAGGG----------GG-CTGTTGTCATGTCCGTATG--TGTTTGTGAGAGCATACATGCGTGCGTGCGT-ATGTGCTTGCGTGCA--TCT--GTGTGTATGTGTGTTaa
gi|5 : ccggtg----------TA-C-ATGCGTGCGTGCGTATG--TGC--TTGCGTGCATCTGTGTGTATGTGTGTTGCGTGTATG--TACA--TGC--GAGTGGGCGTGTgcgtgtatgtacatgcgagtgggcgtgttt
gi|6 : ccggtggaggttcacttttttcttttttgctacatcttatagcttttccgtaaagtgtttcgtttttatgtgtgacaatgtgcttaaataaaaactgttaaaagtcacatttgttttaattaacaaccattttttcatcttaaaaaaactccgagtgaagccgtccattcctctaccagcgggaaggggtgtcactgtcacattctcccctatgtcctgatttccagagcataaggtccggttctaaaacccgttggagattctttttttttttgagggggctgttgtcatgtccgtatgtgtttgtgagagca-TTTTTT-C-T----------------AA---GTTTTT-ACGTGTGTGT-------GTGTGTGACAGTGTGTTTAATAAA-TACCTTTAAA-------------G------TCACAATATTA-TATAT-TATTTAAGT-AACAGTC--GT-GTTGTCATCCT--AATAT-TTCCTTTGTATC-------TA------GCAAAAGGT---------TA-AGAATATATATAGCATTCTGAGCGAGGCATCCCATACCCCAATCAGTGCGAGAGGAAGTCA------CATTTTCCCATGCGACCTGGTTTCCTGTATATtt
gi|7 : -CTT--AAAAAAT------GAATG-------CA------GCGATTGGTTT-----T-CA-AAAACAAAT--------CTGAATGAGGCCTCTCATTTCTCCATCAGCGGGAGGAATTGTCAATATCACACTCTCACCCACGGCATTGTTTTCAGTACATAAGGTAACGGTTCTAAAACTCTTTGGA-----TG-TGTAA-GTTTTATG---G----------TG-C-GTAATTGCGTACGTATT--TGT--GTGTGTCCGTGCGTGTTTTTGTGCGT-ACGTGCATGCGTACA--TGT--GTGCGTGCGAGTGCTtttgttcagttttgtgtgtgtatttttttcgggtacggatcgt
gi|8 : gtTCCTGTACCCAAACCAGCAATGACAATATTTACCACAGTCT-CCCCATGTTTCGGAT-TTGAAATCCAGT----A--GAGGTTCAC-T-TTTTTTCTTTTTATAC----ATCTTATAA-T-TCCCCC-C-CACCCCCACCCCCCTCTAA---GTTTTCCTCAT-----T-------GTGTGTAACAGTGTGTTT----AA-TA-------A-------------AAACAATTAAA--TGTCA-TA-ACTTATTGAA-TGAACAA-C---C-ATT-TT
gi|9 : c-----TGTTTT---GTTTT-TG---GAGGGGGCTGTTGTC-ATGTCCGTATGTGTTTG--TGC--GTGCATACATGCG----TGCGTGCAT-ATGTGCTTGCGTGCttcatctt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATCCTCCCAAACTAACAATAACAAAAATCAACAATCTCCTTACGTACCCGAATTTGAGAGCCAGGGTTC
Unaligned ( gi|15 ): CTCTGCATGTATGCGTGTCCGTACTAGCGTCTCGGTGTGTGTTAAAAAAAAACAGAGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 33333333333 1 111 444444444444444444 111 2222222222222 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 222222222222 11111 111 2222222222222
lowQualScore : 0 11 3 1 1 1 55 5 8 0 66666666666 888 7 3 1 000 5 666666666666666666 555 4 0 9999999999999 5 5 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 5 666666666666 0 6 0 3 6 888 0 0 44 1 66 5 0 5 888 99999 5 000 4444444444444 5 22 44 66 66 1 1 00 999 77 77
lowQualScore : . .. . . . . .. . . . ........... ... . . . ... . .................. ... . . ............. . . ..................................................................................................................................... . . ............ . . . . . ... . . .. . .. . . . ... ..... . ... ............. . .. .. .. .. . . .. ... .. ..
lowQualScore : 2 00 0 7 6 7 99 7 0 8 55555555555 333 3 3 3 222 7 111111111111111111 777 3 2 8888888888888 0 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 4 7 777777777777 4 3 3 0 6 777 3 2 22 0 00 0 7 7 888 44444 7 000 0000000000000 0 00 88 11 11 7 0 88 222 99 99
consensus : GAAATTTGCTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACCCCNACTATCGATGACAAAATCTTCCACAGTCT-TCCCACGTCTTAAGT-TTGAAATCCGGTGGG-A--GAGGTTCACGT-TTTTTTCTTTCTATNCATATATCTTATAG-T-TTTTCT-C-C----------------AA---GTTTTTCACTT-----T-------ATGTGTGACAGTG-TGTTTAA-TAA-------------A------TAACT-----GTTA-A---A--------AC-TATTGAA-T-AACAG-C--TTGTT-TTA-CTT--AAAAAC------GAATGC---------A----GCGATTGGTCT-----TATA-AAAACAAAT--------CCGAGCGAGGCCTCCCATTCCCCCATCAGCGGGAGGGGNTGTCAATATCACATTCTCCCCCGCGNCATGGTTTTCAGTACATAAGGTNACGGTTCTAAAACTCTT-TGGA---TGTTTTA-G--TTTT-T---GG----------TG-C-GTGNNTGCGTACGTATG--TG--CGTGCGTNCGTGCGTGTTTGCGTGCGT-ACGTGCATGCGTACA--TGT--GTGCGTGCGTGTGTT
Reference ( family-808 ) : GAAATTTGCTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACCCCNACTATCGATGACAAAATCTTCCACAGTCT-TCCCACGTCTTAAGT-TTGAAATCCGATGGG-A--GAGGTTCACGT-TTTTTTCTTTCTATNCATATATCTTATAG-T-TTTTCT-C-C----------------AA---GTTTTTCACTT-----T-------ATGTGTGACAGTG-TGTTTAA-TAA-------------A------TAACT-----GTTA-A---A--------AC-TATTGAA-T-AACAG-C--TTGTT-TTA-CTT--AAAAAC------GAATGC---------A----GCGATTGGTCT-----TATA-AAAACAAAT--------CCGAGCGAGGCCTCCCATTCCCCCATCAGCGGGAGGGGNTGTCAATATCACATTCTCCCCCGCGNCATGGTTTTCAGTACATAAGGTNACGGTTCTAAAACTCTT-TGGA---TGTTTTA-G--TTTT-T---GG----------TG-C-GTGNNTGCGTACGTATG--TG--CGTGCGTNCGTGCGTGTTTGCGTGCGT-ACGTGCATGCGTACA--TGT--GTGCGTGCGTGTGTT
gi|1 : GAAATTTGCTTTAAAGGTCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACGCCCACTATCGATGACAAAATATTTCA--GTCT-TCCCACGTCATAAGT-TTGAAA---AATGGG-GACGAAATTCACGT-TTTTTTCTTTCTATTCATATATCTGATAT-T-TTTTCT-CAC----------------AA---GTCTTTCACTT-----T-------ATGTGTGGCAGTG-TGTTTAA-TAA-------------A------TAAAT-----ATTA-A---A--------ACGTATTGAA-TGAACAA-CA-TTATT-TTA-CCTTGAAAAAG------GAATGC---------A----GCAATTGGTTT-----TATA-AAAACAAAT--------CCGAATGTGGCTTCTCATTCCCCCAACAGCGGAAGGGATTGTCAATATCAAAGTCTCCCCAACGGCATGGTTTTCAGTACATAAGGTAACGGTTTT-AAGCTATT-TTGA---TATTTTAGG--TCTT-T---GG----------CG-C-GTCCGTGCGAACGTATG--TG--TGTGTGTCCGTGCGTGTTACTGTGCGT-ACGTGCATGCGTACA--TGT--ATGCGTACGTGTGTT
gi|10 : AAACTTGCTTTAAAGGTCATAAGCAATGCAAATACATGCATGTAG--TTTATTCCCGTACCCCAACTATCAATAACAAAATCTCACACTGTCT-T
gi|11 : TGCG--CGTATGTTTG--CGTGCGTTCGTGC--GTTCGTGTGCTT-AAGTGCGTGCGTGTA--CGT--TTCCGTACGTGTAT
gi|13 : gCCCCCCAACGTTATGGTTTTCAGTACATAAGGTAACGGTTATAAAACTGTT-TTGA---TATTTT
gi|14 : acaGTATGTAGCATTTACTTTTATATT-----TATCGATGACAAAATCTTTCACAGTCT-TCCCACGTCATAA
gi|16 : TT-----T-------ATGTGTGACAGTG-TGCCTAA-TAA-------------A-------AACT-----GTTA-A---A--------A
gi|2 : tTTCCGTTTCCCCACTAGC-ATAAAACCATCTTCCA--GTCTCTCCCGTGATTTGAGT-TAAAAATCCG--GGG-AT-GGGG-----GTATCTTTTCTTTGT-----TACATCATATAGATATTTTTT-C-T----------------AA---GTTTTT-ACGTG----T-------GTGTGTGACAGTG-TGTTTAA-TAATGCTTTCAAAGTCA------CAA-T-----ATTA-T---AT-------AT-TATTTAAGT-AACAG-C--C-GTT-TTT-CTC--AAT--C------TAATATCTCCTTTATATCTTGCAATAGGT-TAAGAATATATAAAACAT-T--------CTGAGCGAAGCATCCCATACCCCAATCAGTGCGAGAGGTTGTCA------CATTTTCCCATGTGACCTGGTTTCCTGTATATTTGGTG-CAGTTTT-------TTGTGAG---TATTTT------TTT-C---GG-----------------GTATG-GAACGTCTG--TG--CATGTGTGCGTGTGTACTTGCGTGCGT---GTGCgtc
gi|3 : aagaaacatttgttttcaagtcataaaaaatttgggggagaccGAAATTTGTTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAA--TTTATTCCCGTACCCCGACTATCGATGACAACATCTTCCACAGTCT-TCCCACGTCTTAAGTATTGAAATCCGATGG------AGGTTCACGT-TTTTTTATTTCTATACATATATTTTACAG-T-TTTTCT-C-CC---------------AA---GTTTTTCACTT-----TCCACTTTATGTGTGACAGTG-TGTTAAA-TAA-------------A-------AACT-----ATTA-A---A--------AC-T-------------------------TA-TT-----AAAT------GAATGC---------A----GCA------CT-----TATA-AAAACAAAT--------CCGAATAGGTCCTCTCATTGCTCCACCAGCGGGAAGGGATGTCACTTTCACATTCTCACCCACGTCATTGTTTTCAGTACATAAGGTTACAGTTCTAAAACTCTT-TGGA---TGTTTTA-GTTTTTT-T---GG----------TG-C-AGGATTGCGTTTGTATA--CG--TGTTTGTCCGTGCGTATTTGTGTGCGT-TTGTGCATGCGTACA--TGT--GTGTGTGCGTGTGTTtaaataaaaaaaatatagta
gi|4 : TGATTTAAAGGCCATACGCAATGCCAATAAATGCATGTAG--TTTATTCAAGTACCCCCATTATAGATGACAAAATCTTACACAGTCT-TCTCACGTCTTAAGT-TTAAAATC----GGGTA--GAGGTTCACGT-TTTTTTCTTCCTATTCATATATATGATAG-A-TTTTCTCC-C----------------AAGTTGTTTTTCACTT-----T-------ATGTGTGACAGTGTTATTT---TAA-------------A-------AACT-----G--A-ATGCA--------GC-GATTGA--------------TGTT------TT--AAAAAC------AAAT-C---------------CGA-------------ATG-AA-----------------GAG-------TCTCATTCCTCCATCAGCGGGAAGGGATGTCAATATCAAAAT-TCACCCACGGCATTGTTATCAGTACATAAGGTTACGGTTCAAAAACTCTT-TGGA---TGTTTTA-G--TTTT-T---GG----------TG-C-GTGATTGCGTACGTATG--TG--TGTGTGTCCGTGCGTGTTTTTGTGCGT-TCGTACATGTGTACAGTTGTACATGTGTGCGGGTGTT
gi|5 : cCCGGTGG------AGGTTCAC---TTTTTTCTTTTT-TGC-TACATCTTATAG-C-TTTTCC-G-T----------------AAA--GTGTTTCGTTT-----TT------ATGTGTGACAATG-TGCTTAAATAA-------------A-------AACT-----GTTA-A---A--------A--------G-T-CACA--T--TTGTT-TTA-ATT--AACAAC-----------C---------A----TTTTTTCATCT-----TAAA-AAAAC---T--------CCGAGTGAAGCCGTCCATTCCTCTACCAGCGGGAAGGGGTGTCACTGTCACATTCTCCCCTATGTCCTGATTTCCAGAGCATAAGGTC-CGGTTCTAAAACCCGT-TGGAGATTCTTTTT-T--TTTT-TGAGGG----------GG-CTGTTGTCATGTCCGTATG--TGTTTGTGAGAGCATACATGCGTGCGTGCGT-ATGTGCTTGCGTGCA--TCT--GTGTGTATGTGTGTTaa
gi|5 : ----------TA-C-ATGCGTGCGTGCGTATG--TG--CTTGCGTGCATCTGTGTGTATGTGTGTTGCGTGTATG--TACA--TGC--GAGTGGGCGTGTgcgtgtatgtacatgcgagtgggcgtgttt
gi|6 : ccggtggaggttcacttttttcttttttgctacatcttatagcttttccgtaaagtgtttcgtttttatgtgtgacaatgtgcttaaataaaaactgttaaaagtcacatttgttttaattaacaaccattttttcatcttaaaaaaactccgagtgaagccgtccattcctctaccagcgggaaggggtgtcactgtcacattctcccctatgtcctgatttccagagcataaggtccggttctaaaacccgttggagattctttttttttttgagggggctgttgtcatgtccgtatgtgtttgtgagagca-TTTTTT-C-T----------------AA---GTTTTT-ACGTGTGTGT-------GTGTGTGACAGTG-TGTTTAA-TAA-------------A------TACCTTTAAAGTCACA---ATATTATATAT-TATTTAAGT-AACAGTC--GTGTTGTCATCCT--AATATTTCCTTTGTATCT---------A----GCAAAAGGT---------TA-AGAATATATATAGCATTCTGAGCGAGGCATCCCATACCCCAATCAGTGCGAGAGG-----AA-GTCACATTTTCCCATGCGACCTGGTTTCCTGTATATtt
gi|7 : GTC-TTA------AAAAAT------GAATGC---------A----GCGATTGGTTT-----T-CA-AAAACAAAT--------CTGAATGAGGCCTCTCATTTCTCCATCAGCGGGAGGAATTGTCAATATCACACTCTCACCCACGGCATTGTTTTCAGTACATAAGGTAACGGTTCTAAAACTCTT-TGGA---TGTGTAA-G--TTTTAT---GG----------TG-C-GTAATTGCGTACGTATT--TG--TGTGTGTCCGTGCGTGTTTTTGTGCGT-ACGTGCATGCGTACA--TGT--GTGCGTGCGAGTGCTtttgttcagttttgtgtgtgtatttttttcgggtacggatcgt
gi|8 : TCCTGTACCCAAACCAGCAATGACAATATTTACCACAGTCT-CCCCATGTTTCGGAT-TTGAAATCCAGT----A--GAGGTTCAC-T-TTTTTTCTTTTTATAC----ATCTTATAA-T-TCCCCC-C-CACCCCCACCCCCCTCTAA---GTTTTCCTCAT-----T-------GTGTGTAACAGTG-TGTTTAA-TAA-------------AAACAATTAAAT-----GTCA-T---A--------ACTTATTGAA-TGAACAA-CCATTTTT-TCATCTT--
gi|9 : c---TGTTTT--G--TTTT-T---GGAGGGGGCTGTTGTC-ATGTCCGTATGTGTTTG--TG--CGTGCATACATGCG----TGCGTGCAT-ATGTGCTTGCGTGC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATCCTCCCAAACTAACAATAACAAAAATCAACAATCTCCTTACGTACCCGAATTTGAGAGCCAGGGTTC
Unaligned ( gi|15 ): CTCTGCATGTATGCGTGTCCGTACTAGCGTCTCGGTGTGTGTTAAAAAAAAACAGAGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 444444 1 111 444444444444444444 111 2222222222222 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 222222222222 11111 111 2222222222222
lowQualScore : 0 11 3 1 1 1 55 5 8 888888 888 7 3 1 000 5 666666666666666666 555 4 0 9999999999999 5 5 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 5 666666666666 0 6 0 3 6 888 0 0 44 1 66 5 0 5 888 99999 5 000 4444444444444 5 22 44 66 66 1 1 00 999 77 77
lowQualScore : . .. . . . . .. . . ...... ... . . . ... . .................. ... . . ............. . . ..................................................................................................................................... . . ............ . . . . . ... . . .. . .. . . . ... ..... . ... ............. . .. .. .. .. . . .. ... .. ..
lowQualScore : 2 00 0 7 6 7 99 7 0 000000 333 3 3 3 222 7 111111111111111111 777 3 2 8888888888888 0 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 4 7 777777777777 4 3 3 0 6 777 3 2 22 0 00 0 7 7 888 44444 7 000 0000000000000 0 00 88 11 11 7 0 88 222 99 99
consensus : GAAATTTGCTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACCCCNACTATCGATGACAAAATCTTCCACAGTCT-TCCCACGTCTTAAGT-TTGAAATCCGGT-G-A-GAGGTTCACGT-TTTTTTCTTTCTATNCATATATCTTATAG-T-TTTTCT-C-C----------------AA---GTTTTTCACTT-----T-------ATGTGTGACAGTG-TGTTTAA-TAA-------------A------TAACT-----GTTA-A---A--------AC-TATTGAA-T-AACAG-C--TTGTT-TTA-CTT--AAAAAC------GAATGC---------A----GCGATTGGTCT-----TATA-AAAACAAAT--------CCGAGCGAGGCCTCCCATTCCCCCATCAGCGGGAGGGGNTGTCAATATCACATTCTCCCCCGCGNCATGGTTTTCAGTACATAAGGTNACGGTTCTAAAACTCTT-TGGA---TGTTTTA-G--TTTT-T---GG----------TG-C-GTGNNTGCGTACGTATG--TG--CGTGCGTNCGTGCGTGTTTGCGTGCGT-ACGTGCATGCGTACA--TGT--GTGCGTGCGTGTGTT
Reference ( family-808 ) : GAAATTTGCTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACCCCNACTATCGATGACAAAATCTTCCACAGTCT-TCCCACGTCTTAAGT-TTGAAATCCGGTGGGA-GAGGTTCACGT-TTTTTTCTTTCTATNCATATATCTTATAG-T-TTTTCT-C-C----------------AA---GTTTTTCACTT-----T-------ATGTGTGACAGTG-TGTTTAA-TAA-------------A------TAACT-----GTTA-A---A--------AC-TATTGAA-T-AACAG-C--TTGTT-TTA-CTT--AAAAAC------GAATGC---------A----GCGATTGGTCT-----TATA-AAAACAAAT--------CCGAGCGAGGCCTCCCATTCCCCCATCAGCGGGAGGGGNTGTCAATATCACATTCTCCCCCGCGNCATGGTTTTCAGTACATAAGGTNACGGTTCTAAAACTCTT-TGGA---TGTTTTA-G--TTTT-T---GG----------TG-C-GTGNNTGCGTACGTATG--TG--CGTGCGTNCGTGCGTGTTTGCGTGCGT-ACGTGCATGCGTACA--TGT--GTGCGTGCGTGTGTT
gi|1 : GAAATTTGCTTTAAAGGTCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACGCCCACTATCGATGACAAAATATTTCA--GTCT-TCCCACGTCATAAGT-TTGAAAAATGG--GGACGAAATTCACGT-TTTTTTCTTTCTATTCATATATCTGATAT-T-TTTTCT-CAC----------------AA---GTCTTTCACTT-----T-------ATGTGTGGCAGTG-TGTTTAA-TAA-------------A------TAAAT-----ATTA-A---A--------ACGTATTGAA-TGAACAA-CA-TTATT-TTA-CCTTGAAAAAG------GAATGC---------A----GCAATTGGTTT-----TATA-AAAACAAAT--------CCGAATGTGGCTTCTCATTCCCCCAACAGCGGAAGGGATTGTCAATATCAAAGTCTCCCCAACGGCATGGTTTTCAGTACATAAGGTAACGGTTTT-AAGCTATT-TTGA---TATTTTAGG--TCTT-T---GG----------CG-C-GTCCGTGCGAACGTATG--TG--TGTGTGTCCGTGCGTGTTACTGTGCGT-ACGTGCATGCGTACA--TGT--ATGCGTACGTGTGTT
gi|10 : AAACTTGCTTTAAAGGTCATAAGCAATGCAAATACATGCATGTAG--TTTATTCCCGTACCCCAACTATCAATAACAAAATCTCACACTGTCT-T
gi|11 : TGCG--CGTATGTTTG--CGTGCGTTCGTGC--GTTCGTGTGCTT-AAGTGCGTGCGTGTA--CGT--TTCCGTACGTGTAT
gi|13 : gCCCCCCAACGTTATGGTTTTCAGTACATAAGGTAACGGTTATAAAACTGTT-TTGA---TATTTT
gi|14 : acaGTATGTAGCATTTACTTTTATATT-----TATCGATGACAAAATCTTTCACAGTCT-TCCCACGTCATAA
gi|16 : TT-----T-------ATGTGTGACAGTG-TGCCTAA-TAA-------------A-------AACT-----GTTA-A---A--------A
gi|2 : tTTCCGTTTCCCCACTAGC-ATAAAACCATCTTCCA--GTCTCTCCCGTGATTTGAGT-TAAAAATCCGG--GGATGGGG-----GTATCTTTTCTTTGT-----TACATCATATAGATATTTTTT-C-T----------------AA---GTTTTT-ACGTG----T-------GTGTGTGACAGTG-TGTTTAA-TAATGCTTTCAAAGTCA------CAA-T-----ATTA-T---AT-------AT-TATTTAAGT-AACAG-C--C-GTT-TTT-CTC--AAT--C------TAATATCTCCTTTATATCTTGCAATAGGT-TAAGAATATATAAAACAT-T--------CTGAGCGAAGCATCCCATACCCCAATCAGTGCGAGAGGTTGTCA------CATTTTCCCATGTGACCTGGTTTCCTGTATATTTGGTG-CAGTTTT-------TTGTGAG---TATTTT------TTT-C---GG-----------------GTATG-GAACGTCTG--TG--CATGTGTGCGTGTGTACTTGCGTGCGT---GTGCgtc
gi|3 : aagaaacatttgttttcaagtcataaaaaatttgggggagaccGAAATTTGTTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAA--TTTATTCCCGTACCCCGACTATCGATGACAACATCTTCCACAGTCT-TCCCACGTCTTAAGTATTGAAATCCGATGG----AGGTTCACGT-TTTTTTATTTCTATACATATATTTTACAG-T-TTTTCT-C-CC---------------AA---GTTTTTCACTT-----TCCACTTTATGTGTGACAGTG-TGTTAAA-TAA-------------A-------AACT-----ATTA-A---A--------AC-T-------------------------TA-TT-----AAAT------GAATGC---------A----GCA------CT-----TATA-AAAACAAAT--------CCGAATAGGTCCTCTCATTGCTCCACCAGCGGGAAGGGATGTCACTTTCACATTCTCACCCACGTCATTGTTTTCAGTACATAAGGTTACAGTTCTAAAACTCTT-TGGA---TGTTTTA-GTTTTTT-T---GG----------TG-C-AGGATTGCGTTTGTATA--CG--TGTTTGTCCGTGCGTATTTGTGTGCGT-TTGTGCATGCGTACA--TGT--GTGTGTGCGTGTGTTtaaataaaaaaaatatagta
gi|4 : TGATTTAAAGGCCATACGCAATGCCAATAAATGCATGTAG--TTTATTCAAGTACCCCCATTATAGATGACAAAATCTTACACAGTCT-TCTCACGTCTTAAGT-TTAAAATCGGGT---A-GAGGTTCACGT-TTTTTTCTTCCTATTCATATATATGATAG-A-TTTTCTCC-C----------------AAGTTGTTTTTCACTT-----T-------ATGTGTGACAGTGTTATTT---TAA-------------A-------AACT-----G--A-ATGCA--------GC-GATTGA--------------TGTT------TT--AAAAAC------AAAT-C---------------CGA-------------ATG-AA-----------------GAG-------TCTCATTCCTCCATCAGCGGGAAGGGATGTCAATATCAAAAT-TCACCCACGGCATTGTTATCAGTACATAAGGTTACGGTTCAAAAACTCTT-TGGA---TGTTTTA-G--TTTT-T---GG----------TG-C-GTGATTGCGTACGTATG--TG--TGTGTGTCCGTGCGTGTTTTTGTGCGT-TCGTACATGTGTACAGTTGTACATGTGTGCGGGTGTT
gi|5 : cCCGGTGG----AGGTTCAC---TTTTTTCTTTTT-TGC-TACATCTTATAG-C-TTTTCC-G-T----------------AAA--GTGTTTCGTTT-----TT------ATGTGTGACAATG-TGCTTAAATAA-------------A-------AACT-----GTTA-A---A--------A--------G-T-CACA--T--TTGTT-TTA-ATT--AACAAC-----------C---------A----TTTTTTCATCT-----TAAA-AAAAC---T--------CCGAGTGAAGCCGTCCATTCCTCTACCAGCGGGAAGGGGTGTCACTGTCACATTCTCCCCTATGTCCTGATTTCCAGAGCATAAGGTC-CGGTTCTAAAACCCGT-TGGAGATTCTTTTT-T--TTTT-TGAGGG----------GG-CTGTTGTCATGTCCGTATG--TGTTTGTGAGAGCATACATGCGTGCGTGCGT-ATGTGCTTGCGTGCA--TCT--GTGTGTATGTGTGTTaa
gi|5 : ----------TA-C-ATGCGTGCGTGCGTATG--TG--CTTGCGTGCATCTGTGTGTATGTGTGTTGCGTGTATG--TACA--TGC--GAGTGGGCGTGTgcgtgtatgtacatgcgagtgggcgtgttt
gi|6 : ccggtggaggttcacttttttcttttttgctacatcttatagcttttccgtaaagtgtttcgtttttatgtgtgacaatgtgcttaaataaaaactgttaaaagtcacatttgttttaattaacaaccattttttcatcttaaaaaaactccgagtgaagccgtccattcctctaccagcgggaaggggtgtcactgtcacattctcccctatgtcctgatttccagagcataaggtccggttctaaaacccgttggagattctttttttttttgagggggctgttgtcatgtccgtatgtgtttgtgagagca-TTTTTT-C-T----------------AA---GTTTTT-ACGTGTGTGT-------GTGTGTGACAGTG-TGTTTAA-TAA-------------A------TACCTTTAAAGTCACA---ATATTATATAT-TATTTAAGT-AACAGTC--GTGTTGTCATCCT--AATATTTCCTTTGTATCT---------A----GCAAAAGGT---------TA-AGAATATATATAGCATTCTGAGCGAGGCATCCCATACCCCAATCAGTGCGAGAGG-----AA-GTCACATTTTCCCATGCGACCTGGTTTCCTGTATATtt
gi|7 : GTC-TTA------AAAAAT------GAATGC---------A----GCGATTGGTTT-----T-CA-AAAACAAAT--------CTGAATGAGGCCTCTCATTTCTCCATCAGCGGGAGGAATTGTCAATATCACACTCTCACCCACGGCATTGTTTTCAGTACATAAGGTAACGGTTCTAAAACTCTT-TGGA---TGTGTAA-G--TTTTAT---GG----------TG-C-GTAATTGCGTACGTATT--TG--TGTGTGTCCGTGCGTGTTTTTGTGCGT-ACGTGCATGCGTACA--TGT--GTGCGTGCGAGTGCTtttgttcagttttgtgtgtgtatttttttcgggtacggatcgt
gi|8 : TCCTGTACCCAAACCAGCAATGACAATATTTACCACAGTCT-CCCCATGTTTCGGAT-TTGAAATCCAGT---A-GAGGTTCAC-T-TTTTTTCTTTTTATAC----ATCTTATAA-T-TCCCCC-C-CACCCCCACCCCCCTCTAA---GTTTTCCTCAT-----T-------GTGTGTAACAGTG-TGTTTAA-TAA-------------AAACAATTAAAT-----GTCA-T---A--------ACTTATTGAA-TGAACAA-CCATTTTT-TCATCTT--
gi|9 : c---TGTTTT--G--TTTT-T---GGAGGGGGCTGTTGTC-ATGTCCGTATGTGTTTG--TG--CGTGCATACATGCG----TGCGTGCAT-ATGTGCTTGCGTGC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATCCTCCCAAACTAACAATAACAAAAATCAACAATCTCCTTACGTACCCGAATTTGAGAGCCAGGGTTC
Unaligned ( gi|15 ): CTCTGCATGTATGCGTGTCCGTACTAGCGTCTCGGTGTGTGTTAAAAAAAAACAGAGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 222 1 111 444444444444444444 111 2222222222222 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 222222222222 11111 111 2222222222222
lowQualScore : 0 11 3 1 1 1 55 5 8 777 888 7 3 1 000 5 666666666666666666 555 4 0 9999999999999 5 5 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 5 666666666666 0 6 0 3 6 888 0 0 44 1 66 5 0 5 888 99999 5 000 4444444444444 5 22 44 66 66 1 1 00 999 77 77
lowQualScore : . .. . . . . .. . . ... ... . . . ... . .................. ... . . ............. . . ..................................................................................................................................... . . ............ . . . . . ... . . .. . .. . . . ... ..... . ... ............. . .. .. .. .. . . .. ... .. ..
lowQualScore : 2 00 0 7 6 7 99 7 0 333 333 3 3 3 222 7 111111111111111111 777 3 2 8888888888888 0 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 4 7 777777777777 4 3 3 0 6 777 3 2 22 0 00 0 7 7 888 44444 7 000 0000000000000 0 00 88 11 11 7 0 88 222 99 99
consensus : GAAATTTGCTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACCCCNACTATCGATGACAAAATCTTCCACAGTCT-TCCCACGTCTTAAGT-TTGAAATCCGGTGA-GAGGTTCACGT-TTTTTTCTTTCTATNCATATATCTTATAG-T-TTTTCT-C-C----------------AA---GTTTTTCACTT-----T-------ATGTGTGACAGTG-TGTTTAA-TAA-------------A------TAACT-----GTTA-A---A--------AC-TATTGAA-T-AACAG-C--TTGTT-TTA-CTT--AAAAAC------GAATGC---------A----GCGATTGGTCT-----TATA-AAAACAAAT--------CCGAGCGAGGCCTCCCATTCCCCCATCAGCGGGAGGGGNTGTCAATATCACATTCTCCCCCGCGNCATGGTTTTCAGTACATAAGGTNACGGTTCTAAAACTCTT-TGGA---TGTTTTA-G--TTTT-T---GG----------TG-C-GTGNNTGCGTACGTATG--TG--CGTGCGTNCGTGCGTGTTTGCGTGCGT-ACGTGCATGCGTACA--TGT--GTGCGTGCGTGTGTT
Reference ( family-808 ) : GAAATTTGCTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACCCCNACTATCGATGACAAAATCTTCCACAGTCT-TCCCACGTCTTAAGT-TTGAAATCCGGTGA-GAGGTTCACGT-TTTTTTCTTTCTATNCATATATCTTATAG-T-TTTTCT-C-C----------------AA---GTTTTTCACTT-----T-------ATGTGTGACAGTG-TGTTTAA-TAA-------------A------TAACT-----GTTA-A---A--------AC-TATTGAA-T-AACAG-C--TTGTT-TTA-CTT--AAAAAC------GAATGC---------A----GCGATTGGTCT-----TATA-AAAACAAAT--------CCGAGCGAGGCCTCCCATTCCCCCATCAGCGGGAGGGGNTGTCAATATCACATTCTCCCCCGCGNCATGGTTTTCAGTACATAAGGTNACGGTTCTAAAACTCTT-TGGA---TGTTTTA-G--TTTT-T---GG----------TG-C-GTGNNTGCGTACGTATG--TG--CGTGCGTNCGTGCGTGTTTGCGTGCGT-ACGTGCATGCGTACA--TGT--GTGCGTGCGTGTGTT
gi|1 : GAAATTTGCTTTAAAGGTCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACGCCCACTATCGATGACAAAATATTTCA--GTCT-TCCCACGTCATAAGT-TTGAAAAATGGGGACGAAATTCACGT-TTTTTTCTTTCTATTCATATATCTGATAT-T-TTTTCT-CAC----------------AA---GTCTTTCACTT-----T-------ATGTGTGGCAGTG-TGTTTAA-TAA-------------A------TAAAT-----ATTA-A---A--------ACGTATTGAA-TGAACAA-CA-TTATT-TTA-CCTTGAAAAAG------GAATGC---------A----GCAATTGGTTT-----TATA-AAAACAAAT--------CCGAATGTGGCTTCTCATTCCCCCAACAGCGGAAGGGATTGTCAATATCAAAGTCTCCCCAACGGCATGGTTTTCAGTACATAAGGTAACGGTTTT-AAGCTATT-TTGA---TATTTTAGG--TCTT-T---GG----------CG-C-GTCCGTGCGAACGTATG--TG--TGTGTGTCCGTGCGTGTTACTGTGCGT-ACGTGCATGCGTACA--TGT--ATGCGTACGTGTGTT
gi|10 : AAACTTGCTTTAAAGGTCATAAGCAATGCAAATACATGCATGTAG--TTTATTCCCGTACCCCAACTATCAATAACAAAATCTCACACTGTCT-T
gi|11 : TGCG--CGTATGTTTG--CGTGCGTTCGTGC--GTTCGTGTGCTT-AAGTGCGTGCGTGTA--CGT--TTCCGTACGTGTAT
gi|13 : gCCCCCCAACGTTATGGTTTTCAGTACATAAGGTAACGGTTATAAAACTGTT-TTGA---TATTTT
gi|14 : acaGTATGTAGCATTTACTTTTATATT-----TATCGATGACAAAATCTTTCACAGTCT-TCCCACGTCATAA
gi|16 : TT-----T-------ATGTGTGACAGTG-TGCCTAA-TAA-------------A-------AACT-----GTTA-A---A--------A
gi|2 : tTTCCGTTTCCCCACTAGC-ATAAAACCATCTTCCA--GTCTCTCCCGTGATTTGAGT-TAAAAATCCGGGGATGGGG-----GTATCTTTTCTTTGT-----TACATCATATAGATATTTTTT-C-T----------------AA---GTTTTT-ACGTG----T-------GTGTGTGACAGTG-TGTTTAA-TAATGCTTTCAAAGTCA------CAA-T-----ATTA-T---AT-------AT-TATTTAAGT-AACAG-C--C-GTT-TTT-CTC--AAT--C------TAATATCTCCTTTATATCTTGCAATAGGT-TAAGAATATATAAAACAT-T--------CTGAGCGAAGCATCCCATACCCCAATCAGTGCGAGAGGTTGTCA------CATTTTCCCATGTGACCTGGTTTCCTGTATATTTGGTG-CAGTTTT-------TTGTGAG---TATTTT------TTT-C---GG-----------------GTATG-GAACGTCTG--TG--CATGTGTGCGTGTGTACTTGCGTGCGT---GTGCgtc
gi|3 : aagaaacatttgttttcaagtcataaaaaatttgggggagaccGAAATTTGTTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAA--TTTATTCCCGTACCCCGACTATCGATGACAACATCTTCCACAGTCT-TCCCACGTCTTAAGTATTGAAATCCGATG--GAGGTTCACGT-TTTTTTATTTCTATACATATATTTTACAG-T-TTTTCT-C-CC---------------AA---GTTTTTCACTT-----TCCACTTTATGTGTGACAGTG-TGTTAAA-TAA-------------A-------AACT-----ATTA-A---A--------AC-T-------------------------TA-TT-----AAAT------GAATGC---------A----GCA------CT-----TATA-AAAACAAAT--------CCGAATAGGTCCTCTCATTGCTCCACCAGCGGGAAGGGATGTCACTTTCACATTCTCACCCACGTCATTGTTTTCAGTACATAAGGTTACAGTTCTAAAACTCTT-TGGA---TGTTTTA-GTTTTTT-T---GG----------TG-C-AGGATTGCGTTTGTATA--CG--TGTTTGTCCGTGCGTATTTGTGTGCGT-TTGTGCATGCGTACA--TGT--GTGTGTGCGTGTGTTtaaataaaaaaaatatagta
gi|4 : TGATTTAAAGGCCATACGCAATGCCAATAAATGCATGTAG--TTTATTCAAGTACCCCCATTATAGATGACAAAATCTTACACAGTCT-TCTCACGTCTTAAGT-TTAAAATCGGGT-A-GAGGTTCACGT-TTTTTTCTTCCTATTCATATATATGATAG-A-TTTTCTCC-C----------------AAGTTGTTTTTCACTT-----T-------ATGTGTGACAGTGTTATTT---TAA-------------A-------AACT-----G--A-ATGCA--------GC-GATTGA--------------TGTT------TT--AAAAAC------AAAT-C---------------CGA-------------ATG-AA-----------------GAG-------TCTCATTCCTCCATCAGCGGGAAGGGATGTCAATATCAAAAT-TCACCCACGGCATTGTTATCAGTACATAAGGTTACGGTTCAAAAACTCTT-TGGA---TGTTTTA-G--TTTT-T---GG----------TG-C-GTGATTGCGTACGTATG--TG--TGTGTGTCCGTGCGTGTTTTTGTGCGT-TCGTACATGTGTACAGTTGTACATGTGTGCGGGTGTT
gi|5 : cCCGGTG--GAGGTTCAC---TTTTTTCTTTTT-TGC-TACATCTTATAG-C-TTTTCC-G-T----------------AAA--GTGTTTCGTTT-----TT------ATGTGTGACAATG-TGCTTAAATAA-------------A-------AACT-----GTTA-A---A--------A--------G-T-CACA--T--TTGTT-TTA-ATT--AACAAC-----------C---------A----TTTTTTCATCT-----TAAA-AAAAC---T--------CCGAGTGAAGCCGTCCATTCCTCTACCAGCGGGAAGGGGTGTCACTGTCACATTCTCCCCTATGTCCTGATTTCCAGAGCATAAGGTC-CGGTTCTAAAACCCGT-TGGAGATTCTTTTT-T--TTTT-TGAGGG----------GG-CTGTTGTCATGTCCGTATG--TGTTTGTGAGAGCATACATGCGTGCGTGCGT-ATGTGCTTGCGTGCA--TCT--GTGTGTATGTGTGTTaa
gi|5 : ----------TA-C-ATGCGTGCGTGCGTATG--TG--CTTGCGTGCATCTGTGTGTATGTGTGTTGCGTGTATG--TACA--TGC--GAGTGGGCGTGTgcgtgtatgtacatgcgagtgggcgtgttt
gi|6 : ccggtggaggttcacttttttcttttttgctacatcttatagcttttccgtaaagtgtttcgtttttatgtgtgacaatgtgcttaaataaaaactgttaaaagtcacatttgttttaattaacaaccattttttcatcttaaaaaaactccgagtgaagccgtccattcctctaccagcgggaaggggtgtcactgtcacattctcccctatgtcctgatttccagagcataaggtccggttctaaaacccgttggagattctttttttttttgagggggctgttgtcatgtccgtatgtgtttgtgagagca-TTTTTT-C-T----------------AA---GTTTTT-ACGTGTGTGT-------GTGTGTGACAGTG-TGTTTAA-TAA-------------A------TACCTTTAAAGTCACA---ATATTATATAT-TATTTAAGT-AACAGTC--GTGTTGTCATCCT--AATATTTCCTTTGTATCT---------A----GCAAAAGGT---------TA-AGAATATATATAGCATTCTGAGCGAGGCATCCCATACCCCAATCAGTGCGAGAGG-----AA-GTCACATTTTCCCATGCGACCTGGTTTCCTGTATATtt
gi|7 : GTC-TTA------AAAAAT------GAATGC---------A----GCGATTGGTTT-----T-CA-AAAACAAAT--------CTGAATGAGGCCTCTCATTTCTCCATCAGCGGGAGGAATTGTCAATATCACACTCTCACCCACGGCATTGTTTTCAGTACATAAGGTAACGGTTCTAAAACTCTT-TGGA---TGTGTAA-G--TTTTAT---GG----------TG-C-GTAATTGCGTACGTATT--TG--TGTGTGTCCGTGCGTGTTTTTGTGCGT-ACGTGCATGCGTACA--TGT--GTGCGTGCGAGTGCTtttgttcagttttgtgtgtgtatttttttcgggtacggatcgt
gi|8 : TCCTGTACCCAAACCAGCAATGACAATATTTACCACAGTCT-CCCCATGTTTCGGAT-TTGAAATCCAGT-A-GAGGTTCAC-T-TTTTTTCTTTTTATAC----ATCTTATAA-T-TCCCCC-C-CACCCCCACCCCCCTCTAA---GTTTTCCTCAT-----T-------GTGTGTAACAGTG-TGTTTAA-TAA-------------AAACAATTAAAT-----GTCA-T---A--------ACTTATTGAA-TGAACAA-CCATTTTT-TCATCTT--
gi|9 : c---TGTTTT--G--TTTT-T---GGAGGGGGCTGTTGTC-ATGTCCGTATGTGTTTG--TG--CGTGCATACATGCG----TGCGTGCAT-ATGTGCTTGCGTGC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATCCTCCCAAACTAACAATAACAAAAATCAACAATCTCCTTACGTACCCGAATTTGAGAGCCAGGGTTC
Unaligned ( gi|15 ): CTCTGCATGTATGCGTGTCCGTACTAGCGTCTCGGTGTGTGTTAAAAAAAAACAGAGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 222 1 111 444444444444444444 111 2222222222222 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 222222222222 11111 111 2222222222222
lowQualScore : 0 11 3 1 1 1 55 5 8 777 888 7 3 1 000 5 666666666666666666 555 4 0 9999999999999 5 5 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 5 666666666666 0 6 0 3 6 888 0 0 44 1 66 5 0 5 888 99999 5 000 4444444444444 5 22 44 66 66 1 1 00 999 77 77
lowQualScore : . .. . . . . .. . . ... ... . . . ... . .................. ... . . ............. . . ..................................................................................................................................... . . ............ . . . . . ... . . .. . .. . . . ... ..... . ... ............. . .. .. .. .. . . .. ... .. ..
lowQualScore : 2 00 0 7 6 7 99 7 0 333 333 3 3 3 222 7 111111111111111111 777 3 2 8888888888888 0 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 4 7 777777777777 4 3 3 0 6 777 3 2 22 0 00 0 7 7 888 44444 7 000 0000000000000 0 00 88 11 11 7 0 88 222 99 99
consensus : GAAATTTGCTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACCCCNACTATCGATGACAAAATCTTCCACAGTCT-TCCCACGTCTTAAGT-TTGAAATCCGGTGA-GAGGTTCACGT-TTTTTTCTTTCTATNCATATATCTTATAG-T-TTTTCT-C-C----------------AA---GTTTTTCACTT-----T-------ATGTGTGACAGTG-TGTTTAA-TAA-------------A------TAACT-----GTTA-A---A--------AC-TATTGAA-T-AACAG-C--TTGTT-TTA-CTT--AAAAAC------GAATGC---------A----GCGATTGGTCT-----TATA-AAAACAAAT--------CCGAGCGAGGCCTCCCATTCCCCCATCAGCGGGAGGGGNTGTCAATATCACATTCTCCCCCGCGNCATGGTTTTCAGTACATAAGGTNACGGTTCTAAAACTCTT-TGGA---TGTTTTA-G--TTTT-T---GG----------TG-C-GTGNNTGCGTACGTATG--TG--CGTGCGTNCGTGCGTGTTTGCGTGCGT-ACGTGCATGCGTACA--TGT--GTGCGTGCGTGTGTT
Reference ( family-808 ) : GAAATTTGCTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACCCCNACTATCGATGACAAAATCTTCCACAGTCT-TCCCACGTCTTAAGT-TTGAAATCCGGTGA-GAGGTTCACGT-TTTTTTCTTTCTATNCATATATCTTATAG-T-TTTTCT-C-C----------------AA---GTTTTTCACTT-----T-------ATGTGTGACAGTG-TGTTTAA-TAA-------------A------TAACT-----GTTA-A---A--------AC-TATTGAA-T-AACAG-C--TTGTT-TTA-CTT--AAAAAC------GAATGC---------A----GCGATTGGTCT-----TATA-AAAACAAAT--------CCGAGCGAGGCCTCCCATTCCCCCATCAGCGGGAGGGGNTGTCAATATCACATTCTCCCCCGCGNCATGGTTTTCAGTACATAAGGTNACGGTTCTAAAACTCTT-TGGA---TGTTTTA-G--TTTT-T---GG----------TG-C-GTGNNTGCGTACGTATG--TG--CGTGCGTNCGTGCGTGTTTGCGTGCGT-ACGTGCATGCGTACA--TGT--GTGCGTGCGTGTGTT
gi|1 : GAAATTTGCTTTAAAGGTCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACGCCCACTATCGATGACAAAATATTTCA--GTCT-TCCCACGTCATAAGT-TTGAAAAATGGGGACGAAATTCACGT-TTTTTTCTTTCTATTCATATATCTGATAT-T-TTTTCT-CAC----------------AA---GTCTTTCACTT-----T-------ATGTGTGGCAGTG-TGTTTAA-TAA-------------A------TAAAT-----ATTA-A---A--------ACGTATTGAA-TGAACAA-CA-TTATT-TTA-CCTTGAAAAAG------GAATGC---------A----GCAATTGGTTT-----TATA-AAAACAAAT--------CCGAATGTGGCTTCTCATTCCCCCAACAGCGGAAGGGATTGTCAATATCAAAGTCTCCCCAACGGCATGGTTTTCAGTACATAAGGTAACGGTTTT-AAGCTATT-TTGA---TATTTTAGG--TCTT-T---GG----------CG-C-GTCCGTGCGAACGTATG--TG--TGTGTGTCCGTGCGTGTTACTGTGCGT-ACGTGCATGCGTACA--TGT--ATGCGTACGTGTGTT
gi|10 : AAACTTGCTTTAAAGGTCATAAGCAATGCAAATACATGCATGTAG--TTTATTCCCGTACCCCAACTATCAATAACAAAATCTCACACTGTCT-T
gi|11 : TGCG--CGTATGTTTG--CGTGCGTTCGTGC--GTTCGTGTGCTT-AAGTGCGTGCGTGTA--CGT--TTCCGTACGTGTAT
gi|13 : gCCCCCCAACGTTATGGTTTTCAGTACATAAGGTAACGGTTATAAAACTGTT-TTGA---TATTTT
gi|14 : acaGTATGTAGCATTTACTTTTATATT-----TATCGATGACAAAATCTTTCACAGTCT-TCCCACGTCATAA
gi|16 : TT-----T-------ATGTGTGACAGTG-TGCCTAA-TAA-------------A-------AACT-----GTTA-A---A--------A
gi|2 : tTTCCGTTTCCCCACTAGC-ATAAAACCATCTTCCA--GTCTCTCCCGTGATTTGAGT-TAAAAATCCGGGGATGGGG-----GTATCTTTTCTTTGT-----TACATCATATAGATATTTTTT-C-T----------------AA---GTTTTT-ACGTG----T-------GTGTGTGACAGTG-TGTTTAA-TAATGCTTTCAAAGTCA------CAA-T-----ATTA-T---AT-------AT-TATTTAAGT-AACAG-C--C-GTT-TTT-CTC--AAT--C------TAATATCTCCTTTATATCTTGCAATAGGT-TAAGAATATATAAAACAT-T--------CTGAGCGAAGCATCCCATACCCCAATCAGTGCGAGAGGTTGTCA------CATTTTCCCATGTGACCTGGTTTCCTGTATATTTGGTG-CAGTTTT-------TTGTGAG---TATTTT------TTT-C---GG-----------------GTATG-GAACGTCTG--TG--CATGTGTGCGTGTGTACTTGCGTGCGT---GTGCgtc
gi|3 : aagaaacatttgttttcaagtcataaaaaatttgggggagaccGAAATTTGTTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAA--TTTATTCCCGTACCCCGACTATCGATGACAACATCTTCCACAGTCT-TCCCACGTCTTAAGTATTGAAATCCGATG--GAGGTTCACGT-TTTTTTATTTCTATACATATATTTTACAG-T-TTTTCT-C-CC---------------AA---GTTTTTCACTT-----TCCACTTTATGTGTGACAGTG-TGTTAAA-TAA-------------A-------AACT-----ATTA-A---A--------AC-T-------------------------TA-TT-----AAAT------GAATGC---------A----GCA------CT-----TATA-AAAACAAAT--------CCGAATAGGTCCTCTCATTGCTCCACCAGCGGGAAGGGATGTCACTTTCACATTCTCACCCACGTCATTGTTTTCAGTACATAAGGTTACAGTTCTAAAACTCTT-TGGA---TGTTTTA-GTTTTTT-T---GG----------TG-C-AGGATTGCGTTTGTATA--CG--TGTTTGTCCGTGCGTATTTGTGTGCGT-TTGTGCATGCGTACA--TGT--GTGTGTGCGTGTGTTtaaataaaaaaaatatagta
gi|4 : TGATTTAAAGGCCATACGCAATGCCAATAAATGCATGTAG--TTTATTCAAGTACCCCCATTATAGATGACAAAATCTTACACAGTCT-TCTCACGTCTTAAGT-TTAAAATCGGGT-A-GAGGTTCACGT-TTTTTTCTTCCTATTCATATATATGATAG-A-TTTTCTCC-C----------------AAGTTGTTTTTCACTT-----T-------ATGTGTGACAGTGTTATTT---TAA-------------A-------AACT-----G--A-ATGCA--------GC-GATTGA--------------TGTT------TT--AAAAAC------AAAT-C---------------CGA-------------ATG-AA-----------------GAG-------TCTCATTCCTCCATCAGCGGGAAGGGATGTCAATATCAAAAT-TCACCCACGGCATTGTTATCAGTACATAAGGTTACGGTTCAAAAACTCTT-TGGA---TGTTTTA-G--TTTT-T---GG----------TG-C-GTGATTGCGTACGTATG--TG--TGTGTGTCCGTGCGTGTTTTTGTGCGT-TCGTACATGTGTACAGTTGTACATGTGTGCGGGTGTT
gi|5 : cCCGGTG--GAGGTTCAC---TTTTTTCTTTTT-TGC-TACATCTTATAG-C-TTTTCC-G-T----------------AAA--GTGTTTCGTTT-----TT------ATGTGTGACAATG-TGCTTAAATAA-------------A-------AACT-----GTTA-A---A--------A--------G-T-CACA--T--TTGTT-TTA-ATT--AACAAC-----------C---------A----TTTTTTCATCT-----TAAA-AAAAC---T--------CCGAGTGAAGCCGTCCATTCCTCTACCAGCGGGAAGGGGTGTCACTGTCACATTCTCCCCTATGTCCTGATTTCCAGAGCATAAGGTC-CGGTTCTAAAACCCGT-TGGAGATTCTTTTT-T--TTTT-TGAGGG----------GG-CTGTTGTCATGTCCGTATG--TGTTTGTGAGAGCATACATGCGTGCGTGCGT-ATGTGCTTGCGTGCA--TCT--GTGTGTATGTGTGTTaa
gi|5 : ----------TA-C-ATGCGTGCGTGCGTATG--TG--CTTGCGTGCATCTGTGTGTATGTGTGTTGCGTGTATG--TACA--TGC--GAGTGGGCGTGTgcgtgtatgtacatgcgagtgggcgtgttt
gi|6 : ccggtggaggttcacttttttcttttttgctacatcttatagcttttccgtaaagtgtttcgtttttatgtgtgacaatgtgcttaaataaaaactgttaaaagtcacatttgttttaattaacaaccattttttcatcttaaaaaaactccgagtgaagccgtccattcctctaccagcgggaaggggtgtcactgtcacattctcccctatgtcctgatttccagagcataaggtccggttctaaaacccgttggagattctttttttttttgagggggctgttgtcatgtccgtatgtgtttgtgagagca-TTTTTT-C-T----------------AA---GTTTTT-ACGTGTGTGT-------GTGTGTGACAGTG-TGTTTAA-TAA-------------A------TACCTTTAAAGTCACA---ATATTATATAT-TATTTAAGT-AACAGTC--GTGTTGTCATCCT--AATATTTCCTTTGTATCT---------A----GCAAAAGGT---------TA-AGAATATATATAGCATTCTGAGCGAGGCATCCCATACCCCAATCAGTGCGAGAGG-----AA-GTCACATTTTCCCATGCGACCTGGTTTCCTGTATATtt
gi|7 : GTC-TTA------AAAAAT------GAATGC---------A----GCGATTGGTTT-----T-CA-AAAACAAAT--------CTGAATGAGGCCTCTCATTTCTCCATCAGCGGGAGGAATTGTCAATATCACACTCTCACCCACGGCATTGTTTTCAGTACATAAGGTAACGGTTCTAAAACTCTT-TGGA---TGTGTAA-G--TTTTAT---GG----------TG-C-GTAATTGCGTACGTATT--TG--TGTGTGTCCGTGCGTGTTTTTGTGCGT-ACGTGCATGCGTACA--TGT--GTGCGTGCGAGTGCTtttgttcagttttgtgtgtgtatttttttcgggtacggatcgt
gi|8 : TCCTGTACCCAAACCAGCAATGACAATATTTACCACAGTCT-CCCCATGTTTCGGAT-TTGAAATCCAGT-A-GAGGTTCAC-T-TTTTTTCTTTTTATAC----ATCTTATAA-T-TCCCCC-C-CACCCCCACCCCCCTCTAA---GTTTTCCTCAT-----T-------GTGTGTAACAGTG-TGTTTAA-TAA-------------AAACAATTAAAT-----GTCA-T---A--------ACTTATTGAA-TGAACAA-CCATTTTT-TCATCTT--
gi|9 : c---TGTTTT--G--TTTT-T---GGAGGGGGCTGTTGTC-ATGTCCGTATGTGTTTG--TG--CGTGCATACATGCG----TGCGTGCAT-ATGTGCTTGCGTGC
blockSeqs : CA A A A A CT C A GAT GTA A A A ATA C CACCCCCACCCCCCTCT GTT C TCCACTTT T A TGCTTTCAAAGTCACAATATTATATATTATTTAAGTAACAGCCGTTTTTCTCAATCTAATATCTCCTTTATATCTTGCAATAGGTTAAGAA A T ATATATAGCATT C A T CTT AA T AA A G GAT AGTT A GAG AGGGGGCTGTTGT T TA AA TT TT C T TGC GT AC
blockSeqs : . C G A T CA . . G GT A T A T . CC A C GTGTGT . . ATACCTTTAAAGTCACAATATTATATATTATTTAAGTAACAGTCGTGTTGTCATCCTAATATTTCCTTTGTATCTAGCAAAAGGT A . AAAT T C A ATA TG A TA A . . AG . . TG . AT TT . . T G AA . .
blockSeqs : . G G C C CA . . A GT A G . A . T . C GT . . AAACTGTTAAAAGTCACATTTGTTTTAATTAACAACCATTTTTTCATCT A . AAAT T C A CTG CA T TA A . . TT . . TG . AT TA . . T C TT . .
blockSeqs : . C G C C CA . . G T . A . C . C . C TT . . AAACTGAATGCAGCGATTGATGTTTTAAAAACAAATCCGA A . ATT C A G ATA CA G AA A . . AG . . GG . GT TC . . T C TC . .
blockSeqs : A A A A CA . A . . . . T . T . . T . . AAACTATTAAAACTTATTAAATGAATGCAGCACT . . T T C T AG TA T G A . . G . . TA . CG TG . . A G AT . .
blockSeqs : . . T C . . . T . . T . . . . . . . . . TG A C . . . . . . TG . AT TA . . C G AC . .
blockSeqs : T . . CA G . . . TC TG . . T C AT
blockSeqs : . . . C A .
blockSeqCons : CA G** T***************** AG***
originalCons : GAAATTTGCTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACCCCNACTATCGATGACAAAATCTTCCACAGTCT-TCCCACGTCTTAAGT-TTGAAATCCGGTGA-GAGGTTCACGT-TTTTTTCTTTCTATNCATATATCTTATAG-T-TTTTCT-C-C----------------AA---GTTTTTCACTT-----T-------ATGTGTGACAGTG-TGTTTAA-TAA-------------A------TAACT-----GTTA-A---A--------AC-TATTGAA-T-AACAG-C--TTGTT-TTA-CTT--AAAAAC------GAATGC---------A----GCGATTGGTCT-----TATA-AAAACAAAT--------CCGAGCGAGGCCTCCCATTCCCCCATCAGCGGGAGGGGNTGTCAATATCACATTCTCCCCCGCGNCATGGTTTTCAGTACATAAGGTNACGGTTCTAAAACTCTT-TGGA---TGTTTTA-G--TTTT-T---GG----------TG-C-GTGNNTGCGTACGTATG--TG--CGTGCGTNCGTGCGTGTTTGCGTGCGT-ACGTGCATGCGTACA--TGT--GTGCGTGCGTGTGTT
finalCons : GAAATTTGCTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACCCCNACTATCGATGACAAAATCTTCCACAGTCT-TCCCACGTCTTAAGT-TTGAAATCCGGTG--GAGGTTCACGT-TTTTTTCTTTCTATNCATATATCTTATAG-T-TTTTCT-CT-----------------AA---GTTTTTCACTT-----T-------ATGTGTGACAGTG-TGTTTAA-TAA-------------A------TAACT-----GTTA-A---A--------AC-TATTGAA-T-AACAG-C--TTGTT-TTA-CTT--AAAAAC------GAATGC---------A----GCGATTGGTCT-----TATA-AAAACAAAT--------CCGAGCGAGGCCTCCCATTCCCCCATCAGCGGGAGGGGNTGTCAATATCACATTCTCCCCCGCGNCATGGTTTTCAGTACATAAGGTNACGGTTCTAAAACTCTT-TGGA---TGTTTTAG---TTTT-T---GG----------TG-C-GTGNNTGCGTACGTATG--TG--CGTGCGTNCGTGCGTGTTTGCGTGCGT-ACGTGCATGCGTACA--TGT--GTGCGTGCGTGTGTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATCCTCCCAAACTAACAATAACAAAAATCAACAATCTCCTTACGTACCCGAATTTGAGAGCCAGGGTTC
Unaligned ( gi|15 ): CTCTGCATGTATGCGTGTCCGTACTAGCGTCTCGGTGTGTGTTAAAAAAAAACAGAGTA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111 1 1 33333333333333333333 111 2222222222222 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 222222222222 111111 111 2222222222222
lowQualScore : 0 11 3 1 1 1 55 5 8 111 99 0 7 3 1 99999999999999999999 5 888 555 4 5 4444444444444 5 5 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 5 666666666666 0 6 0 3 6 1 555 0 0 44 1 66 3 1 888 666666 5 000 4444444444444 5 22 44 66 66 1 1 00 999 77 77
lowQualScore : . .. . . . . .. . . ... .. . . . . .................... . ... ... . . ............. . . ..................................................................................................................................... . . ............ . . . . . . ... . . .. . .. . . ... ...... . ... ............. . .. .. .. .. . . .. ... .. ..
lowQualScore : 2 00 0 7 6 7 99 7 0 777 22 8 3 3 3 11111111111111111111 7 999 777 3 0 8888888888888 0 0 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 4 7 777777777777 4 3 3 0 6 4 111 3 2 22 0 00 0 4 888 222222 7 000 0000000000000 0 00 88 11 11 7 0 88 222 99 99
consensus : GAAATTTGCTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACCCCNACTATCGATGACAAAATCTTCCACAGTCT-TCCCACGTCTTAAGT-TTGAAATCCGG---TG--GAGGTTCACGTTTTTTTCTTTCTATNCATATATCTTATAG-T-T----------------TTTCT-C-C-AA---GTTTTTCAC-TT-----T-------ATGTGTGACAGTG-TGTTTAA-TAA-------------A------TAACT-----GTTA-A---A--------AC-TATTGAA-T-AACAG-C--TTGTT-TTA-CTT--AAAAAC------GAATG-------CA------GCGATTGGTCT-----TATA-AAAACAAAT--------CCGAGCGAGGCCTCCCATTCCCCCATCAGCGGGAGGGGNTGTCAATATCACATTCTCCCCCGCGNCATGGTTTTCAGTACATAAGGTNACGGTTCTAAAACTCTTTGGA---TGTTTTA-G--TTTT-TG---G----------TG-C-GTGNNTGCGTACGTATG--TGC--GTGCGTNCGTGCGTGTTTGCGTGCGT-ACGTGCATGCGTACA--TGT--GTGCGTGCGTGTGTT
Reference ( family-808 ) : GAAATTTGCTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACCCCNACTATCGATGACAAAATCTTCCACAGTCT-TCCCACGTCTTAAGT-TTGAAATCCGG---TG--GAGGTTCACGTTTTTTTCTTTCTATNCATATATCTTATAG-T-T----------------TTTCT-C-T-AA---GTTTTTCAC-TT-----T-------ATGTGTGACAGTG-TGTTTAA-TAA-------------A------TAACT-----GTTA-A---A--------AC-TATTGAA-T-AACAG-C--TTGTT-TTA-CTT--AAAAAC------GAATG-------CA------GCGATTGGTCT-----TATA-AAAACAAAT--------CCGAGCGAGGCCTCCCATTCCCCCATCAGCGGGAGGGGNTGTCAATATCACATTCTCCCCCGCGNCATGGTTTTCAGTACATAAGGTNACGGTTCTAAAACTCTTTGGA---TGTTTTA-G--TTTT-TG---G----------TG-C-GTGNNTGCGTACGTATG--TGC--GTGCGTNCGTGCGTGTTTGCGTGCGT-ACGTGCATGCGTACA--TGT--GTGCGTGCGTGTGTT
gi|1 : GAAATTTGCTTTAAAGGTCATAAGCAATGCAAATAAATGCATGTAG--TTTATTCCCGTACGCCCACTATCGATGACAAAATATTTCA--GTCT-TCCCACGTCATAAGT-TTGAAAAATGG---GGACGAAATTCACGTTTTTTTCTTTCTATTCATATATCTGATAT-T-T----------------TTTCT-CAC-AA---GTCTTTCAC-TT-----T-------ATGTGTGGCAGTG-TGTTTAA-TAA-------------A------TAAAT-----ATTA-A---A--------ACGTATTGAA-TGAACAA-CA-TTATT-TTA-CCTTGAAAAAG------GAATG-------CA------GCAATTGGTTT-----TATA-AAAACAAAT--------CCGAATGTGGCTTCTCATTCCCCCAACAGCGGAAGGGATTGTCAATATCAAAGTCTCCCCAACGGCATGGTTTTCAGTACATAAGGTAACGGTTTT-AAGCTATTTTGA---TATTTTAGG--TCTT-TG---G----------CG-C-GTCCGTGCGAACGTATG--TGT--GTGTGTCCGTGCGTGTTACTGTGCGT-ACGTGCATGCGTACA--TGT--ATGCGTACGTGTGTT
gi|10 : AAACTTGCTTTAAAGGTCATAAGCAATGCAAATACATGCATGTAG--TTTATTCCCGTACCCCAACTATCAATAACAAAATCTCACACTGTCT-T
gi|11 : TGCG--CGTATGTTTGC--GTGCGTTCGTGC--GTTCGTGTGCTT-AAGTGCGTGCGTGTA--CGT--TTCCGTACGTGTAT
gi|13 : gCCCCCCAACGTTATGGTTTTCAGTACATAAGGTAACGGTTATAAAACTGTTTTGA---TATTTT
gi|14 : acaGTATGTAGCATTTACTTTTATATT-----TATCGATGACAAAATCTTTCACAGTCT-TCCCACGTCATAA
gi|16 : -TT-----T-------ATGTGTGACAGTG-TGCCTAA-TAA-------------A-------AACT-----GTTA-A---A--------A
gi|2 : tTTCCGTTTCCCCACTAGC-ATAAAACCATCTTCCA--GTCTCTCCCGTGATTTGAGT-TAAAAATCCGGGGATG--GGGGT--A---TCTTTTCTTTGT-----TACATCATATAGATAT----------------TTTTT-C-T-AA---GTTTTT-ACGTG-----T-------GTGTGTGACAGTG-TGTTTAA-TAATGCTTTCAAAGTCA------CAA-T-----ATTATA---T--------AT-TATTTAAGT-AACAG-C---CGTT-TTT-CTC----AATC------TAATATCTCCTTTATATCTTGCAATAGGT-TAAGAATATATAAAAC-ATT--------CTGAGCGAAGCATCCCATACCCCAATCAGTGCGAGAGGTTG------TCACATTTTCCCATGTGACCTGGTTTCCTGTATATTTGGTG-CAGTT------TTTTGTGAG---TATTT------TTTT-CG---G-----------------GTATG-GAACGTCTG--TGC--ATGTGTGCGTGTGTACTTGCGTGCGT---GTGCgtc
gi|3 : aagaaacatttgttttcaagtcataaaaaatttgggggagaccGAAATTTGTTTTAAAGGCCATAAGCAATGCAAATAAATGCATGTAA--TTTATTCCCGTACCCCGACTATCGATGACAACATCTTCCACAGTCT-TCCCACGTCTTAAGTATTGAAATCCGA---TG--GAGGTTCACGTTTTTTTATTTCTATACATATATTTTACAG-T-T----------------TTTCT-C-CCAA---GTTTTTCAC-TT-----TCCACTTTATGTGTGACAGTG-TGTTAAA-TAA-------------A-------AACT-----ATTA-A---A--------AC-T-------------------------TA-TT-----AAAT------GAATG-------CA------GCA------CT-----TATA-AAAACAAAT--------CCGAATAGGTCCTCTCATTGCTCCACCAGCGGGAAGGGATGTCACTTTCACATTCTCACCCACGTCATTGTTTTCAGTACATAAGGTTACAGTTCTAAAACTCTTTGGA---TGTTTTA-GTTTTTT-TG---G----------TG-C-AGGATTGCGTTTGTATA--CGT--GTTTGTCCGTGCGTATTTGTGTGCGT-TTGTGCATGCGTACA--TGT--GTGTGTGCGTGTGTTtaaataaaaaaaatatagta
gi|4 : TGATTTAAAGGCCATACGCAATGCCAATAAATGCATGTAG--TTTATTCAAGTACCCCCATTATAGATGACAAAATCTTACACAGTCT-TCTCACGTCTTAAGT-TTAAAATCGGG---TA--GAGGTTCACGTTTTTTTCTTCCTATTCATATATATGATAG-A-T----------------TTTCTCC-C-AAGTTGTTTTTCAC-TT-----T-------ATGTGTGACAGTGTTATTT---TAA-------------A-------AACT-----G--A-ATGCA--------GC-GATTGA--------------TGTT------TT--AAAAAC------AAAT--------C--------CGA-------------ATG-AA-----------------GAG-------TCTCATTCCTCCATCAGCGGGAAGGGATGTCAATATCAAAAT-TCACCCACGGCATTGTTATCAGTACATAAGGTTACGGTTCAAAAACTCTTTGGA---TGTTTTA-G--TTTT-TG---G----------TG-C-GTGATTGCGTACGTATG--TGT--GTGTGTCCGTGCGTGTTTTTGTGCGT-TCGTACATGTGTACAGTTGTACATGTGTGCGGGTGTT
gi|5 : cCCGG---TG--GAGGTTCAC--TTTTTTCTTTTT-TGC-TACATCTTATAG-C-T----------------TTTCC-G-T-AAA--GTGTTTCGT-TT-----TT------ATGTGTGACAATG-TGCTTAAATAA-------------A-------AACT-----GTTA-A---A--------A--------G-T-CACA--T--TTGTT-TTA-ATT--AACAAC------------------CA------TTTTTTCATCT-----TAAA-AAAAC---T--------CCGAGTGAAGCCGTCCATTCCTCTACCAGCGGGAAGGGGTGTCACTGTCACATTCTCCCCTATGTCCTGATTTCCAGAGCATAAGGTC-CGGTTCTAAAACCCGTTGGAGATTCTTTTT-T--TTTT-TGAGGG----------GG-CTGTTGTCATGTCCGTATG--TGTTTGTGAGAGCATACATGCGTGCGTGCGT-ATGTGCTTGCGTGCA--TCT--GTGTGTATGTGTGTTaa
gi|5 : ----------TA-C-ATGCGTGCGTGCGTATG--TGC--TTGCGTGCATCTGTGTGTATGTGTGTTGCGTGTATG--TACA--TGC--GAGTGGGCGTGTgcgtgtatgtacatgcgagtgggcgtgttt
gi|6 : ccggtggaggttcacttttttcttttttgctacatcttatagcttttccgtaaagtgtttcgtttttatgtgtgacaatgtgcttaaataaaaactgttaaaagtcacatttgttttaattaacaaccattttttcatcttaaaaaaactccgagtgaagccgtccattcctctaccagcgggaaggggtgtcactgtcacattctcccctatgtcctgatttccagagcataaggtccggttctaaaacccgttggagattctttttttttttgagggggctgttgtcatgtccgtatgtgtttgtgagagca-T----------------TTTTT-C-T-AA---GTTTTT-AC-GTGTGTGT-------GTGTGTGACAGTG-TGTTTAA-TAA-------------A------TACCTTTAAAGTCACA---ATATTATATAT-TATTTAAGT-AACAGTC--GTGTTGTCATCCT--AATATTTCCTTTGTATC-------TA------GCAAAAGGT---------TA-AGAATATATATAGCATTCTGAGCGAGGCATCCCATACCCCAATCAGTGCGAGAGG-----AA-GTCACATTTTCCCATGCGACCTGGTTTCCTGTATATtt
gi|7 : GTC-TTA------AAAAAT------GAATG-------CA------GCGATTGGTTT-----T-CA-AAAACAAAT--------CTGAATGAGGCCTCTCATTTCTCCATCAGCGGGAGGAATTGTCAATATCACACTCTCACCCACGGCATTGTTTTCAGTACATAAGGTAACGGTTCTAAAACTCTTTGGA---TGTGTAA-G--TTTTATG---G----------TG-C-GTAATTGCGTACGTATT--TGT--GTGTGTCCGTGCGTGTTTTTGTGCGT-ACGTGCATGCGTACA--TGT--GTGCGTGCGAGTGCTtttgttcagttttgtgtgtgtatttttttcgggtacggatcgt
gi|8 : TCCTGTACCCAAACCAGCAATGACAATATTTACCACAGTCT-CCCCATGTTTCGGAT-TTGAAATCCAG---TA--GAGGTTCAC-TTTTTTTCTTTTTATAC----ATCTTATAA-T-TCCCCCCCACCCCCACCCCCCT-C-T-AA---GTTTTCCTC-AT-----T-------GTGTGTAACAGTG-TGTTTAA-TAA-------------AAACAATTAAAT-----GTCA-T---A--------ACTTATTGAA-TGAACAA-CCATTTTT-TCATCTT--
gi|9 : c---TGTTTT--G--TTTT-TG---GAGGGGGCTGTTGTC-ATGTCCGTATGTGTTTG--TGC--GTGCATACATGCG----TGCGTGCAT-ATGTGCTTGCGTGC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATCCTCCCAAACTAACAATAACAAAAATCAACAATCTCCTTACGTACCCGAATTTGAGAGCCAGGGTTC
Unaligned ( gi|15 ): CTCTGCATGTATGCGTGTCCGTACTAGCGTCTCGGTGTGTGTTAAAAAAAAACAGAGTA