lowQualScore : 1 4444444 1 555 111 22 1 2222222222 1 11 3333 222 11 555555555555555555555555 22222222222222 111111 2222222222222222222 11
lowQualScore : 6 1 0000000 2 5 2 333 555 00 7 3 0 9999999999 8888 4 6 5 0 55 0 5555 111 11 222222222222222222222222 55555555555555 444444 4 2 5555555555555555555 5 2 444 22 33 5 11
lowQualScore : . . ....... . . . ... ... .. . . . .......... .... . . . . .. . .... ... .. ........................ .............. ...... . . ................... . . ... .. .. . ..
lowQualScore : 0 5 0000000 5 0 5 777 333 00 0 8 8 6666666666 5555 0 4 0 8 66 7 2222 000 66 888888888888888888888888 33333333333333 000000 9 5 0000000000000000000 0 5 444 44 77 5 88
consensus : TTTTTACAATGTAGGTCCNAACGNTGTGTATANGTCGNTATGCC---GTATTATATAACTC-AGAATATATATATATTATTATTAT-TATT----T-AATNTTTATTTCAGTCTCATCTATGCACAACGCAATAATAATAA---CATCAATAT-CATACAATAT-----A----TTATGTACATA--GCCATTCAAATATATA---TGAATTAC---AAGAGACTATCACACGATGCAA-AA--NA-CAAT---------TAA-C-TAT---TCACATAATAAGAC--TATGTGTAATGCTG-CAAATCGA
Reference ( gi|8 ) : TTTTTGCAATGTAGGTCCAAAC-ATG---ATAGATAGCTATGCTTCAGTATTAAATAACTC-AGAATATATATATATTATTATTAT-TATT----T-AATGTTTATTTCAGTCTCATCTATGAACAACGCACTTTTAATAA---CATCAATAC-CATACAATAT----TA----TTATGTACATG--GCCATTAAAATATATA---TGAATAAC---AAGAGACTATCACATAATGCAA-AA--GA-CAAA---------TAA-C-TAT---TCACATAATAAGAC--TATGTGCAATGCTT-CAAATCGA
gi|20 : TTTTTACAATGTAGGTCCTAAC-TTG---ATAGGTCGCTATGCC----TATTATATAACTC-AGAATATA
gi|10 : GATCCGAACGATGTGTATATATCGATATGCT---GTAT-ATATACCT-----ATGT-TATATATT----TT-T-TATT----T-AATCTTTATTGCAGTCTCATCTTTGTAAAACGCA------ATAA---TA---ATA-----ATAATAT----TA------ATGT-----------------CATATA---TGAATTAC---AAGAGATTATCACACAATGCAA-AA--AA-CAAC---------TAA-C-TAT---GCACATAACAAGAC--TTAGTGTAATGCTG-CACATC
gi|6 : taatttatcgtcaggatCAGTATTTACTGACCCTAGAAAATGTTT---TTAT-ATT---TATTTATGT-AATCTGTATTTAAGTTTAA-CTATGCACATCACACCATTAACAATGCCATCACTAT-CACGCAATA------------CGTGCACATA--GCCATT----TA--------GAATCAC---AGGA------TACGCAATACAATCATTGT-C------------TAT-CATAT---GTATATGATAAGAC--TACGTGCAATGCTTGCAAAT
gi|13 : TATATGTATCAATGTTATATAGT----C-AATCTGTATCTAAGTCTCATCTATGCACAATATAATATTAATAA---CATCAATAT-CATACTATAT----TA------------ATA--GCAATTAAA--ATATA---TGAATTGC---AAAATAATATCACATGCTACGT-AA--TA-C-------------AA-C-TAT---Taaatgcattaaaagtgaaaagatcagaaaatactctgatccaaaacagaggtgggggtacaagaaaaa
gi|7 : aattatcattcaataacttgaacacatgtggaaacatatacggtacctATAT-TTATT--TAT--ATT----T-AATATTTATTTCA-TCCGATCTATGTACAATACAAT---AATAA---CATCGA---------AAGA-------------ATGCAAA----GCCATTCAAATATAT-----GAATTAT---AAGAGCCTTTCACACAATGCAA-AA--AAGCAAAAAAAAACAATAAAC-TAT---TCACAGTTTAAGAC--TATGAATAATGCTG-CAAACCGAttaaacatt
gi|11 : tttaATTTTGTCAATAT--ATT----T-AATATTTTTTTCAGTCTCA----------ACGCAATAATAATAATAGCATTAATAT-CATACAATAT----AAAAAATTATGTACATA--ACAATTCAAATATAT-----GAATTAC---AAGAGACTATTACACAATGCAA-AA--GA-CAAT---------TAA-C-TAT---TCAAAATATAAGAC--TATGTGTAATGCTG-CAAATCGAtacatcaaaagtgtattaagataacaaaaatactaaaactttgacgataaaaagaacactttttgcgcgaaaatgatac
gi|1 : tgtattgTATGTATT----T-AAT-CTTA----AGTTTCATCTATACACAGTACAATAATAATAA---CATCAGTAT-CATACAATA-------------A-GTACATAAAGTCATTCA--TATATA---T---TAACTTGAAGATACTATCACAGAATGCAA-AA--TA-C-AA---------TAAGT-TAT---TTACATAATAAAAG--TATGTGTAAGGGTG-CAAATtttattaaaagtatgttaaga
gi|16 : -TATC----T-AATCTTCATTTCAGTCTTATatacttatgaaaggtgtattgatatagaaaagaactatcaaaagggtcaaagaaaaaagagcaactttgtaactctgtagcaattttgcgcaatctaaagatatgtttacgcaatctaaagatatattaacggatcgaatattccctctgatcaaatcagaaaagaactgatttgcagaatacacttagtaaatggaaaagatgtaacatataaaacaaaag
gi|19 : aga-TATT----T-AATATTTATTT-------ATCTATGCACATCACAATAATAATAATAGCATCAATAT-CATACAATAaatatcatacaatatatcatattatatacagccattcaaatatacgaattgaaagagacaattaactattcacaatatgtgtaatgctgcaaattgattta
gi|4 : gtgctaatgATT----TGAATATTTATATAATTCTCATCTATGCAAAACACAATAATAATAC---AAGGAATAT-CATGAAATAT------------ATGTACATA--ACCATTCTAATATGTGCATTGGAGCAC---ACGAGGCTATCACGTGATGCCA-AA--CT-CAAT---------TAA-C-TGC---TTACATAATAAGAC---ATATGTCATGCTG-CAACTC
gi|3 : aaaaatataaccatttttgttgtacatctaaaTT----T-TAT-TTTATTTCCGTCTCATC-AT--ACAAAGCAATAATAGTTA---CATTTATAT-CATAGAATAT------------ATGTACATA--GCCCTTCAAATAT----------TA-C---AAGAAAAT-TCACGTAATGCAA-AA--GC-CAAT---------TAA-C-TAT---TCGCAAAACAAGAC----CGTGTAATTCTC-AAAATCGActttaattaaaactgttacggttaacagacatgctatgcagttataacaagaaaatagaacactattactataaaa
gi|14 : atTTTTAAT-------TTAATATATATATAATTT----T-----TTATACACACA--GCCATTCAAATATAT-----GAATTAC---AAGAGACGACCAAACAATGCAA-AA--GA-CAAT---------TAA-C-TAT---TCACATAATAAGAA--TATTTGTAATGCTT-CAAATCGAtttattaaacgtgtattaagaaaaacaaaatactaaaactctgtcaagataaaaagagcggtattacgcaatataaaaaaactatcttaaaatattgagtatatcctctcagatcaggaaaaaaatatttacactgatatatgat
gi|16 : gtataatagaaggctAATAT-CATACAATATATCATA----TTATATACA----GCCATTCAAATA--TA---CGAATTGA---AAGAGAC--------AAT-------------------------TAA-C-TAT---TCACA-A---------TATGTGTAATGCTG-CAAATTGAtttattaaaagtgtgtaaaga
gi|2 : agatatctaatcttcatttcagtcttatTAC-AATACAATATA---CA----TT-----CAT------ATTAAA----------TGAATTAC---AAGAGACTATCACACAACGCAA-AA--TA-CAAT---------AAA-C-TAT---ATTCATAAAAAGACTATATGTGTAATGCTG-CAAATCGAttta
gi|12 : actttatttaacacacactctggtgcattattataacttaactcgaatggatatTACAAT------------CTATGTACAAA--GCCATCCAAATATA-A----GAATTTC---AAGCGACTATCACACGATGCAA-AC--TA-CAAT---------TAA-T-TAT---TTACAT--TTAG----CATGTGAAATtttattaattctgtgtttagattaacaaaaatactactatgacaagaaaaaaacgagcactattgcgcaaaataaaaaatatcttgaagtatccactctgatcagatcagaaaataaactatttgcagcaaacacatggatgttgatataaaggtattattattcatattaaacaaaagt
gi|17 : aaactataatacaacatgcctcacatcttctttagaatatttcttg----TTTTGT-CATG--GCCATTCAAGTG-A-A---TGAATTAC---AAGAGACTATCGCAGGATACAC-AT--AA-CAAT---------TAA-A-TATCAGTTACAAATTATGAC--TGTGcaaagacatatcagcatttaattaagtcactggtgtaatgctgcaaatcgatttattaaagtgtgttaa
gi|15 : atCATTCAAATATAT-----GAATTGC---AAGAAACTACAATACGATGCCA-GT--TA-CAGT---------AAA-T-CCT---TTACACCACAGGAC--TATGTGTAATG-TT-GAATTCGA
gi|5 : aattttcgcttgtattgtcatgtatatcatgaactgagtgaataaactattgaatcacaatTATA---TGAATGT-----AGAGACTATCACACGATGCAA-AA--TA-CAAT---------TAA-T-TAT---TTACATAATAAGAA--CATGTGTAATGCTG-CAAGTCGAtttaaaat
gi|9 : gCTATCACACAATGCAA-A------CAAT---------TAA-C-TAT---TCACATAATAAGAA--TGTATGTAATGCTG-CAAATCttcatcaaatgtgtgttaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcatacacataggagttgataaaaaggttactcttatacttatacaacaaaagcg
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): AGTTAGGTTTTGCAAATTTCTCATATTGTCATGTATACCATGAATTGAGTGAATAAACTATTGAAATTGAATTGAATTGC
Unaligned ( gi|21 ): TAATGCTGCAAATCGATTTATTAACAGTGTGTTA
Alignments
lowQualScore : 4444444 22222 1 2222 1111 11111111 33333333333333333333 1111111 11111111111
lowQualScore : 1 2222222 11 1 00000 66 0 0000 0 6 3 6666 3 88 3 1 3 0 0 55 3 55 44444444 0 2 33 777777 77777777777777777777 33 00 3333333 2 0 44 11111111111 444 66666 1 33 2
lowQualScore : . ....... .. . ..... .. . .... . . . .... . .. . . . . . .. . .. ........ . . .. ...... .................... .. .. ....... . . .. ........... ... ..... . .. .
lowQualScore : 0 7777777 77 0 77777 55 0 0000 2 0 5 3333 2 88 6 0 6 8 7 55 6 00 22222222 2 9 77 777777 22222222222222222222 77 99 8888888 5 9 66 22222222222 444 22222 4 44 9
consensus : TTTTTGCAATGTAGGTCCGAAC-ATG---ATAGATCGCTATGCC---GTATTATA-TAACTC---AGAATGTATATATATTATTATTAT-TATTT-AATNTTTATTTCAGTCTCATCTATGCACA--ACGCAAT-AATAA--TAA---C----ATCAATAT-CAT--AC------AATAT-A-----TTA---T-GTA-CATA--GCCATTCAAATATATA---TGAAT-TACAAGAGACTATCACACGATGCAAAANA-----------CAATTAACTAT---T-----CACATAATAAGAC--TATGTGTAATGC-TGCAAATCGA
Reference ( family-800 ) : TTTTTACAATGTAGGTCCNAACGNTGTGTATANGTCGNTATGCC---GTATTATA-TAACTC---AGAATATATATATATTATTATTAT-TATTT-AATNTTTATTTCAGTCTCATCTATGCACA--ACGCAAT-AATAA--TAA---C----ATCAATAT-CAT--AC------AATAT-A-----TTA---T-GTA-CATA--GCCATTCAAATATATA---TGAAT-TACAAGAGACTATCACACGATGCAAAANA-----------CAATTAACTAT---T-----CACATAATAAGAC--TATGTGTAATGC-TGCAAATCGA
gi|1 : TATGTATTT-AATCTT-A----AGTTTCATCTATACACA--GTACAAT-AATAA--TAA---C----ATCAGTAT-CAT--AC------AATA----------A-----GTA-CATAAAGTCATTCA--TATATA---TTAAC-TTGAAGATACTATCACAGAATGCAAAATA-----------CAATAAGTTAT---T-----TACATAATAAAAG--TATGTGTAAGGG-TGCAAAT
gi|10 : GATCCGAACGATGTGTATATATCGATATGCT---GTAT-ATA-TACCT-------ATGT-TATATATT----TT-T-TATTT-AATCTTTATTGCAGTCTCATCTTTGTAAA--ACGCAAT-AATAA--TAA---T----A---ATAT-TA-------------------------A---T-GT------------------CATATA---TGAAT-TACAAGAGATTATCACACAATGCAAAAAA-----------CAACTAACTAT---G-----CACATAACAAGAC--TTAGTGTAATGC-TGCACATCatacttatgaaaggtgtattgatatagaaaagaactatcaaaagggtcaaagaaaaaagagcaactttgtaactctgtagcaattttgcgcaatctaaagatatgtttacgcaatctaaagatatattaacggatcgaatattccctctgatcaaatcagaaaagaactgatttgcagaatacacttagtaaatggaaaagatgtaacatataaaacaaaag
gi|11 : taatttatcgtcaggatATTTTGTCAATAT--ATTT-AATATTTTTTTCAGTCTCA------------ACGCAAT-AATAA--TAATAGC----ATTAATAT-CAT--AC------AATAT-AAAAAATTA---T-GTA-CATA--ACAATTCAAATATAT-----GAAT-TACAAGAGACTATTACACAATGCAAAAGA-----------CAATTAACTAT---T-----CAAAATATAAGAC--TATGTGTAATGC-TGCAAATCGA
gi|12 : tgtattgT--AC------AAT---------CTA---T-GTA-CAAA--GCCATCCAAATATA-A----GAAT-TTCAAGCGACTATCACACGATGCAAACTA-----------CAATTAATTAT---T-----TACAT--TTAG----CATGTGAAATtttattaaaagtatgttaaga
gi|13 : aaactataatacaacatgcctcacatcttctttagaatatttcttgTATATGTATCAATGTTATATAGTC-AATCTGTATCTAAGTCTCATCTATGCACA--ATATAAT-ATTAA--TAA---C----ATCAATAT-CAT--AC--------TAT-A-----TTA----------ATA--GCAATT-AAA-ATATA---TGAAT-TGCAAAATAATATCACATGCTACGTAATA-----------CAACTAcaaagacatatcagcatttaattaagtcactggtgtaatgctgcaaatcgatttattaaagtgtgttaa
gi|14 : aattatcattcaataacttgaacacatgtggaaacatatacggtacctTTAATATATAT--AT------AATTT-T-----TTA---T-ACA-CACA--GCCATTCAAATAT--A---TGAAT-TACAAGAGACGACCAAACAATGCAAAAGA-----------CAATTAACTAT---T-----CACATAATAAGAA--TATTTGTAATGC-TTCAAATCGAttttaaacatt
gi|15 : gtataatagaaggctttttaatATAT-CATGAACTGAGTGAATAA-A-----CTA---TTGAATCACA--ATCATTCAAATAT--A---TGAAT-TGCAAGAAACTACAATACGATGCCAGTTA-----------CAGTAAATCCT---T-----TACACCACAGGAC--TATGTGTAATGT-TG-AATTCGAtttattaaaagtgtgtaaaga
gi|16 : aattttcgcttgtattgtcatgt-TATCT-AATCTTCATTTCAGTCTtttaaaat
gi|16 : agaAATAT-CAT--AC------AATAT-A-----TCATATT-ATA-TACA--GCCATTCAA--ATATA---CGAAT-TGAAAGAG--------------------A-----------CAATTAACTAT---T-----CACA-A---------TATGTGTAATGC-TGCAAATTGAtataatatcatacaatatatcatattatatacagccattcaaatatacgaattgaaagagacaattaactattcacaatatgtgtaatgctgcaaattgattta
gi|17 : agatatctaatcttcatttcagtcttat-----TTT---T-GT--CATG--GCCATTCAAGTG-A-A---TGAAT-TACAAGAGACTATCGCAGGATACACATAA-----------CAATTAAATATCAGT-----TACAAATTATGAC--TGTGttta
gi|19 : at-TATTT-AATATTTATTT-------ATCTATGCACA--TCACAAT-AATAA--TAATAGC----ATCAATAT-CAT--AC------AATA
gi|2 : gtgctaatgAT-TATAACTTAA---CTCGAATGGATAT---T--AC------AATAC-A---------------A-TATA----CATTCATAT-TAAA---TGAAT-TACAAGAGACTATCACACAACGCAAAATA-----------CAATAAACTAT---A-----TTCATAAAAAGACTATATGTGTAATGC-TGCAAATCGA
gi|20 : actttatttaacacacactctggtgcattTTTTTACAATGTAGGTCCTAAC-TTG---ATAGGTCGCTATGCC----TATTATA-TAACTC---AGAATATAtttattaattctgtgtttagattaacaaaaatactactatgacaagaaaaaaacgagcactattgcgcaaaataaaaaatatcttgaagtatccactctgatcagatcagaaaataaactatttgcagcaaacacatggatgttgatataaaggtattattattcatattaaacaaaagt
gi|3 : AT-T-TTT-A--TTTTATTTCCGTCTCATC-AT--ACA--AAGCAAT-AATAG--TTA---C----ATTTATAT-CAT--AG------AATAT-A-----T-------GTA-CATA--GCCCTTCAAATAT------------TACAAGAAAAT-TCACGTAATGCAAAAGC-----------CAATTAACTAT---T-----CGCAAAACAAGAC----CGTGTAATTC-TCAAAATCGA
gi|4 : ATTTGAATATTTATATAATTCTCATCTATGCAAA--ACACAAT-AATAA--TAC---A----AGGAATAT-CAT--GA------AATA---------TA---T-GTA-CATA--ACCATTCTAATATGTGCATTGGAG-CACACGAGGCTATCACGTGATGCCAAACT-----------CAATTAACTGC---T-----TACATAATAAGAC---ATATGTCATGC-TGCAACTCtttattaaacgtgtattaagaaaaacaaaatactaaaactctgtcaagataaaaagagcggtattacgcaatataaaaaaactatcttaaaatattgagtatatcctctcagatcaggaaaaaaatatttacactgatatatgat
gi|5 : aaaaatataaccatttttgttgtacatctaaaTATA---TGAATGTA---GAGACTATCACACGATGCAAAATA-----------CAATTAATTAT---T-----TACATAATAAGAA--CATGTGTAATGC-TGCAAGTCGActttaattaaaactgttacggttaacagacatgctatgcagttataacaagaaaatagaacactattactataaaa
gi|6 : g---GTATT-TACTGACCCTAGAAAATGTTTTTATATT--TATT---TATGT-AATCTGTATTTAAGTTTAA-CTATGCACATCACACCATTAACAA--TGC---C----ATCACTAT-CAC--GC------AATAC-G-----T-------GCA-CATA--GCCATTTA------------GAAT-CACAGGA------TACGCAATACA----A-----------TCATTGTCTAT---CATATGTATATGATAAGAC--TACGTGCAATGCTTGCAAATttcatcaaatgtgtgttaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcatacacataggagttgataaaaaggttactcttatacttatacaacaaaagcg
gi|7 : caATAT-TTATT--TAT--ATTT-AATATTTATTTCA-TCCGATCTATGTACA--ATACAAT-AATAA--------C----ATCGAAAG-AAT--GC------AA-------------------------A--GCCATTCAAATATAT-----GAAT-TATAAGAGCCTTTCACACAATGCAAAAAAGCAAAAAAAAACAATAAACTAT---T-----CACAGTTTAAGAC--TATGAATAATGC-TGCAAACCGAaaatgcattaaaagtgaaaagatcagaaaatactctgatccaaaacagaggtgggggtacaagaaaaa
gi|8 : tttaTTTTTGCAATGTAGGTCCAAAC-ATG---ATAGATAGCTATGCTTCAGTATTAAA-TAACTC---AGAATATATATATATTATTATTAT-TATTT-AATGTTTATTTCAGTCTCATCTATGAACA--ACGCACT-TTTAA--TAA---C----ATCAATAC-CAT--AC------AATATTA-----TTA---T-GTA-CATG--GCCATTAAAATATATA---TGAAT-AACAAGAGACTATCACATAATGCAAAAGA-----------CAAATAACTAT---T-----CACATAATAAGAC--TATGTGCAATGC-TTCAAATCGAtacatcaaaagtgtattaagataacaaaaatactaaaactttgacgataaaaagaacactttttgcgcgaaaatgatac
gi|9 : CTATCACACAATGCAAA--------------CAATTAACTAT---T-----CACATAATAAGAA--TGTATGTAATGC-TGCAAATC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGTTAGGTTTTGCAAATTTCTCATATTGTCATGTATACCATGAATTGAGTGAATAAACTATTGAAATTGAATTGAATTGC
Unaligned ( gi|21 ): TAATGCTGCAAATCGATTTATTAACAGTGTGTTA
Alignments
lowQualScore : 1 222 22222 1 2222 1111 11111111 33333333333333333333 1111111 11111111111
lowQualScore : 3 3 333 00000 66 0 0000 0 3 3 6666 3 88 3 1 3 0 0 55 3 55 44444444 0 2 33 777777 77777777777777777777 33 00 3333333 2 0 44 11111111111 444 66666 1 33 2
lowQualScore : . . ... ..... .. . .... . . . .... . .. . . . . . .. . .. ........ . . .. ...... .................... .. .. ....... . . .. ........... ... ..... . .. .
lowQualScore : 7 3 333 77777 55 0 0000 2 5 5 3333 2 88 6 0 6 8 7 55 6 00 22222222 2 9 77 777777 22222222222222222222 77 99 8888888 5 9 66 22222222222 444 22222 4 44 9
consensus : TTTTTGCAATGTAGGTCCGAAC-ATG---ATAGATCGCTATGCC---GTATTATA-TAACTC---AGAATGTATATATATTATTATTAT-TATTT-AATNTTTATTTCAGTCTCATCTATGCACA--ACGCAAT-AATAA--TAA---C----ATCAATAT-CAT--AC------AATAT-A-----TTA---T-GTA-CATA--GCCATTCAAATATATA---TGAAT-TACAAGAGACTATCACACGATGCAAAANA-----------CAATTAACTAT---T-----CACATAATAAGAC--TATGTGTAATGC-TGCAAATCGA
Reference ( family-800 ) : TTTTTGCAATGTAGGTCCGAAC-ATG---ATAGATCGCTATGCC---GTATTATA-TAACTC---AGAATGTATATATATTATTATTAT-TATTT-AATNTTTATTTCAGTCTCATCTATGCACA--ACGCAAT-AATAA--TAA---C----ATCAATAT-CAT--AC------AATAT-A-----TTA---T-GTA-CATA--GCCATTCAAATATATA---TGAAT-TACAAGAGACTATCACACGATGCAAAANA-----------CAATTAACTAT---T-----CACATAATAAGAC--TATGTGTAATGC-TGCAAATCGA
gi|1 : TATGTATTT-AATCTT-A----AGTTTCATCTATACACA--GTACAAT-AATAA--TAA---C----ATCAGTAT-CAT--AC------AATA----------A-----GTA-CATAAAGTCATTCA--TATATA---TTAAC-TTGAAGATACTATCACAGAATGCAAAATA-----------CAATAAGTTAT---T-----TACATAATAAAAG--TATGTGTAAGGG-TGCAAAT
gi|10 : GATCCGAACGATGTGTATATATCGATATGCT---GTAT-ATA-TACCT-------ATGT-TATATATT----TT-T-TATTT-AATCTTTATTGCAGTCTCATCTTTGTAAA--ACGCAAT-AATAA--TAA---T----A---ATAT-TA-------------------------A---T-GT------------------CATATA---TGAAT-TACAAGAGATTATCACACAATGCAAAAAA-----------CAACTAACTAT---G-----CACATAACAAGAC--TTAGTGTAATGC-TGCACATCatacttatgaaaggtgtattgatatagaaaagaactatcaaaagggtcaaagaaaaaagagcaactttgtaactctgtagcaattttgcgcaatctaaagatatgtttacgcaatctaaagatatattaacggatcgaatattccctctgatcaaatcagaaaagaactgatttgcagaatacacttagtaaatggaaaagatgtaacatataaaacaaaag
gi|11 : taatttatcgtcaggatTGTATTGATTTTGTCAATAT--ATTT-AATATTTTTTTCAGTCTCA------------ACGCAAT-AATAA--TAATAGC----ATTAATAT-CAT--AC------AATAT-AAAAAATTA---T-GTA-CATA--ACAATTCAAATATAT-----GAAT-TACAAGAGACTATTACACAATGCAAAAGA-----------CAATTAACTAT---T-----CAAAATATAAGAC--TATGTGTAATGC-TGCAAATCGA
gi|12 : T--AC------AAT---------CTA---T-GTA-CAAA--GCCATCCAAATATA-A----GAAT-TTCAAGCGACTATCACACGATGCAAACTA-----------CAATTAATTAT---T-----TACAT--TTAG----CATGTGAAATtttattaaaagtatgttaaga
gi|13 : aaactataatacaacatgcctcacatcttctttagaatatttcttgTATATGTATCAATGTTATATAGTC-AATCTGTATCTAAGTCTCATCTATGCACA--ATATAAT-ATTAA--TAA---C----ATCAATAT-CAT--AC--------TAT-A-----TTA----------ATA--GCAATT-AAA-ATATA---TGAAT-TGCAAAATAATATCACATGCTACGTAATA-----------CAACTAcaaagacatatcagcatttaattaagtcactggtgtaatgctgcaaatcgatttattaaagtgtgttaa
gi|14 : aattatcattcaataacttgaacacatgtggaaacatatacggtacctTTAATATATAT--AT------AATTT-T-----TTA---T-ACA-CACA--GCCATTCAAATAT--A---TGAAT-TACAAGAGACGACCAAACAATGCAAAAGA-----------CAATTAACTAT---T-----CACATAATAAGAA--TATTTGTAATGC-TTCAAATCGAttttaaacatt
gi|15 : gtataatagaaggctttttaatATAT-CATGAACTGAGTGAATAA-A-----CTA---TTGAATCACA--ATCATTCAAATAT--A---TGAAT-TGCAAGAAACTACAATACGATGCCAGTTA-----------CAGTAAATCCT---T-----TACACCACAGGAC--TATGTGTAATGT-TG-AATTCGAtttattaaaagtgtgtaaaga
gi|16 : aattttcgcttgtattgtcatgt-TATCT-AATCTTCATTTCAGTCTtttaaaat
gi|16 : agaAATAT-CAT--AC------AATAT-A-----TCATATT-ATA-TACA--GCCATTCAA--ATATA---CGAAT-TGAAAGAG--------------------A-----------CAATTAACTAT---T-----CACA-A---------TATGTGTAATGC-TGCAAATTGAtataatatcatacaatatatcatattatatacagccattcaaatatacgaattgaaagagacaattaactattcacaatatgtgtaatgctgcaaattgattta
gi|17 : agatatctaatcttcatttcagtcttat-----TTT---T-GT--CATG--GCCATTCAAGTG-A-A---TGAAT-TACAAGAGACTATCGCAGGATACACATAA-----------CAATTAAATATCAGT-----TACAAATTATGAC--TGTGttta
gi|19 : at-TATTT-AATATTTATTT-------ATCTATGCACA--TCACAAT-AATAA--TAATAGC----ATCAATAT-CAT--AC------AATA
gi|2 : gtgctaatgAT-TATAACTTAA---CTCGAATGGATAT---T--AC------AATAC-A---------------A-TATA----CATTCATAT-TAAA---TGAAT-TACAAGAGACTATCACACAACGCAAAATA-----------CAATAAACTAT---A-----TTCATAAAAAGACTATATGTGTAATGC-TGCAAATCGA
gi|20 : actttatttaacacacactctggtgcattTTTTTACAATGTAGGTCCTAAC-TTG---ATAGGTCGCTATGCC----TATTATA-TAACTC---AGAATATAtttattaattctgtgtttagattaacaaaaatactactatgacaagaaaaaaacgagcactattgcgcaaaataaaaaatatcttgaagtatccactctgatcagatcagaaaataaactatttgcagcaaacacatggatgttgatataaaggtattattattcatattaaacaaaagt
gi|3 : AT-T-TTT-A--TTTTATTTCCGTCTCATC-AT--ACA--AAGCAAT-AATAG--TTA---C----ATTTATAT-CAT--AG------AATAT-A-----T-------GTA-CATA--GCCCTTCAAATAT------------TACAAGAAAAT-TCACGTAATGCAAAAGC-----------CAATTAACTAT---T-----CGCAAAACAAGAC----CGTGTAATTC-TCAAAATCGA
gi|4 : ATTTGAATATTTATATAATTCTCATCTATGCAAA--ACACAAT-AATAA--TAC---A----AGGAATAT-CAT--GA------AATA---------TA---T-GTA-CATA--ACCATTCTAATATGTGCATTGGAG-CACACGAGGCTATCACGTGATGCCAAACT-----------CAATTAACTGC---T-----TACATAATAAGAC---ATATGTCATGC-TGCAACTCtttattaaacgtgtattaagaaaaacaaaatactaaaactctgtcaagataaaaagagcggtattacgcaatataaaaaaactatcttaaaatattgagtatatcctctcagatcaggaaaaaaatatttacactgatatatgat
gi|5 : aaaaatataaccatttttgttgtacatctaaaTATA---TGAATGTA---GAGACTATCACACGATGCAAAATA-----------CAATTAATTAT---T-----TACATAATAAGAA--CATGTGTAATGC-TGCAAGTCGActttaattaaaactgttacggttaacagacatgctatgcagttataacaagaaaatagaacactattactataaaa
gi|6 : g---GTATT-TACTGACCCTAGAAAATGTTTTTATATT--TATT---TATGT-AATCTGTATTTAAGTTTAA-CTATGCACATCACACCATTAACAA--TGC---C----ATCACTAT-CAC--GC------AATAC-G-----T-------GCA-CATA--GCCATTTA------------GAAT-CACAGGA------TACGCAATACA----A-----------TCATTGTCTAT---CATATGTATATGATAAGAC--TACGTGCAATGCTTGCAAATttcatcaaatgtgtgttaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcatacacataggagttgataaaaaggttactcttatacttatacaacaaaagcg
gi|7 : caATAT-TTATT--TAT--ATTT-AATATTTATTTCA-TCCGATCTATGTACA--ATACAAT-AATAA--------C----ATCGAAAG-AAT--GC------AA-------------------------A--GCCATTCAAATATAT-----GAAT-TATAAGAGCCTTTCACACAATGCAAAAAAGCAAAAAAAAACAATAAACTAT---T-----CACAGTTTAAGAC--TATGAATAATGC-TGCAAACCGAaaatgcattaaaagtgaaaagatcagaaaatactctgatccaaaacagaggtgggggtacaagaaaaa
gi|8 : tttaTTTTTGCAATGTAGGTCCAAAC-ATG---ATAGATAGCTATGCTTCAGTATTAAA-TAACTC---AGAATATATATATATTATTATTAT-TATTT-AATGTTTATTTCAGTCTCATCTATGAACA--ACGCACT-TTTAA--TAA---C----ATCAATAC-CAT--AC------AATATTA-----TTA---T-GTA-CATG--GCCATTAAAATATATA---TGAAT-AACAAGAGACTATCACATAATGCAAAAGA-----------CAAATAACTAT---T-----CACATAATAAGAC--TATGTGCAATGC-TTCAAATCGAtacatcaaaagtgtattaagataacaaaaatactaaaactttgacgataaaaagaacactttttgcgcgaaaatgatac
gi|9 : CTATCACACAATGCAAA--------------CAATTAACTAT---T-----CACATAATAAGAA--TGTATGTAATGC-TGCAAATC
blockSeqs : T . . TTCAG TA C CTAG A T GTCA A AT G C C TC T CT CTCGA A GA TGAGTG TAAAAAATTATGTA . GTGCATT G AA GCAAAAAAAAA CAG ATATG T TA T
blockSeqs : A . . C TA . C A A AATG A T . A C . . . TAGC . . . TATCATATTATA . ATAT . AG . . . A . .
blockSeqs : T . C A A ATTA A T . C A . . . TAGC . . . AACTATTGAAT . ATAT . CT . . . T . .
blockSeqs : T A ATT A T . C C . . . T . . . TTATTATGTA . ATAC . AT . . . T . .
blockSeqs : A . TA A T . A C . . . C . . . TTTTATACA . AAAT . AG . . . C . .
blockSeqs : . T . T A . . . C . . . CTATGTA . ATAT . TT . . . A . .
blockSeqs : . T . A A . . . A . . . TATGTA . ATAT . TA . . . T . .
blockSeqs : . . C C . . . C . . . TATGTA . AAT . AT . . . A . .
blockSeqs : . . A C . . . C . . . CGTGCA . AT . AG . . . T . .
blockSeqs : . G . . . C . . . TATTA . AA . AC . . . T . .
blockSeqs : . . . ATGT . AT . AT . . . T . .
blockSeqs : . . . CAA . AT . AA . . . G . .
blockSeqs : . . . . . AT . AG . . . T . .
blockSeqs : . . . . . . . . . T .
blockSeqs : . . . . . . . .
blockSeqs : . .
blockSeqCons : ATTA T* TATGTA************** **
originalCons : TTTTTGCAATGTAGGTCCGAAC-ATG---ATAGATCGCTATGCC---GTATTATA-TAACTC---AGAATGTATATATATTATTATTAT-TATTT-AATNTTTATTTCAGTCTCATCTATGCACA--ACGCAAT-AATAA--TAA---C----ATCAATAT-CAT--AC------AATAT-A-----TTA---T-GTA-CATA--GCCATTCAAATATATA---TGAAT-TACAAGAGACTATCACACGATGCAAAANA-----------CAATTAACTAT---T-----CACATAATAAGAC--TATGTGTAATGC-TGCAAATCGA
finalCons : TTTTTGCAATGTAGGTCCGAAC-ATG---ATAGATCGCTATGCC---GTATTATA-TAACTC---AGAATGTATATATATTATTATTATT-ATTT-AATNTTTATTTCAGTCTCATCTATGCACA--ACGCAAT-AATAA--TAA---C----ATCAATAT-CAT--AC------AATATATGTA--------------CATA--GCCATTCAAATATATA---TGAAT-TACAAGAGACTATCACACGATGCAAAANA-----------CAATTAACTAT---T-----CACATAATAAGAC--TATGTGTAATGC-TGCAAATCGA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGTTAGGTTTTGCAAATTTCTCATATTGTCATGTATACCATGAATTGAGTGAATAAACTATTGAAATTGAATTGAATTGC
Unaligned ( gi|21 ): TAATGCTGCAAATCGATTTATTAACAGTGTGTTA
Alignments
lowQualScore : 1 222 22222 1 2222 1111 11111111 222222222222222222222 1111111 11111111111111
lowQualScore : 3 3 333 00000 66 0 0000 0 3 3 6666 3 88 3 1 3 0 55 3 55 44444444 0 3 555555555555555555555 33 0 6666666 2 0 22222222222222 444 66666 22 444 2
lowQualScore : . . ... ..... .. . .... . . . .... . .. . . . . .. . .. ........ . . ..................... .. . ....... . . .............. ... ..... .. ... .
lowQualScore : 7 3 333 77777 55 0 0000 2 5 5 3333 2 88 6 0 6 7 55 6 00 22222222 2 1 000000000000000000000 77 1 8888888 5 9 66666666666666 444 22222 66 444 9
consensus : TTTTTGCAATGTAGGTCCGAAC-ATG---ATAGATCGCTATGCC---GTATTATA-TAACTC---AGAATGTATATATATTATTATTAT-TATTT-AATNTTTATTTCAGTCTCATCTATGCACA--ACGCAAT-AATAA--TAA---C----ATCAATAT-CATACAATAT----A--------T------GTACAT--AGCCATTCAAATATATA---TGAAT-TACAAGAGACTATCACACGATGCAAAANA-----------CAATTAACTAT---T-----CACATAATAAGAC--TATGTGTAATGC-TGCAAATCGA
Reference ( family-800 ) : TTTTTGCAATGTAGGTCCGAAC-ATG---ATAGATCGCTATGCC---GTATTATA-TAACTC---AGAATGTATATATATTATTATTAT-TATTT-AATNTTTATTTCAGTCTCATCTATGCACA--ACGCAAT-AATAA--TAA---C----ATCAATAT-CATACAATAT----A--------T------GTACAT--AGCCATTCAAATATATA---TGAAT-TACAAGAGACTATCACACGATGCAAAANA-----------CAATTAACTAT---T-----CACATAATAAGAC--TATGTGTAATGC-TGCAAATCGA
gi|1 : TATGTATTT-AATCTT-A----AGTTTCATCTATACACA--GTACAAT-AATAA--TAA---C----ATCAGTAT-CATACAATA-----A---------------GTACATAAAGTCATTC--ATATATA---TTAAC-TTGAAGATACTATCACAGAATGCAAAATA-----------CAATAAGTTAT---T-----TACATAATAAAAG--TATGTGTAAGGG-TGCAAAT
gi|10 : GATCCGAACGATGTGTATATATCGATATGCT---GTAT-ATA-TACCT-------ATGT-TATATATT----TT-T-TATTT-AATCTTTATTGCAGTCTCATCTTTGTAAA--ACGCAAT-AATAA--TAA---T----A---ATAT-TA------------A--------T------GT-----------------CATATA---TGAAT-TACAAGAGATTATCACACAATGCAAAAAA-----------CAACTAACTAT---G-----CACATAACAAGAC--TTAGTGTAATGC-TGCACATCatacttatgaaaggtgtattgatatagaaaagaactatcaaaagggtcaaagaaaaaagagcaactttgtaactctgtagcaattttgcgcaatctaaagatatgtttacgcaatctaaagatatattaacggatcgaatattccctctgatcaaatcagaaaagaactgatttgcagaatacacttagtaaatggaaaagatgtaacatataaaacaaaag
gi|11 : taatttatcgtcaggatTGTATTGATTTTGTCAATAT--ATTT-AATATTTTTTTCAGTCTCA------------ACGCAAT-AATAA--TAATAGC----ATTAATAT-CATACAATAT----AAAAAATTAT------GTACAT--AACAATTCAAATAT--A---TGAAT-TACAAGAGACTATTACACAATGCAAAAGA-----------CAATTAACTAT---T-----CAAAATATAAGAC--TATGTGTAATGC-TGCAAATCGA
gi|12 : TACAATCT----A--------T------GTACAA--AGCCATCCAAATATA-A----GAAT-TTCAAGCGACTATCACACGATGCAAACTA-----------CAATTAATTAT---T-----TACAT--TTAG----CATGTGAAATtttattaaaagtatgttaaga
gi|13 : aaactataatacaacatgcctcacatcttctttagaatatttcttgTATATGTATCAATGTTATATAGTC-AATCTGTATCTAAGTCTCATCTATGCACA--ATATAAT-ATTAA--TAA---C----ATCAATAT-CATAC--TAT----A--------T-------TA-AT--AGCAATT-AAA-ATATA---TGAAT-TGCAAAATAATATCACATGCTACGTAATA-----------CAACTAcaaagacatatcagcatttaattaagtcactggtgtaatgctgcaaatcgatttattaaagtgtgttaa
gi|14 : aattatcattcaataacttgaacacatgtggaaacatatacggtacctTTAATATATATATAATTTTTT-A--------T------ACACAC--AGCCATTCAAATAT--A---TGAAT-TACAAGAGACGACCAAACAATGCAAAAGA-----------CAATTAACTAT---T-----CACATAATAAGAA--TATTTGTAATGC-TTCAAATCGAttttaaacatt
gi|15 : gtataatagaaggctttttaatCAC--AATCATTCAAATAT--A---TGAAT-TGCAAGAAACTACAATACGATGCCAGTTA-----------CAGTAAATCCT---T-----TACACCACAGGAC--TATGTGTAATGT-TG-AATTCGAtttattaaaagtgtgtaaaga
gi|16 : aattttcgcttgtattgtcatgtatatcatgaactgagtgaataaactattgaat-TATCT-AATCTTCATTTCAGTCTTATtttaaaat
gi|16 : agaAATAT-CATACAATAT----A--------TCATATTATATAC--AGCCATTCAAATATAC-----GAAT-TGAAAGAGAC-------------------------------AATTAACTAT---T-----CACA-------A---TATGTGTAATGC-TGCAAATTGAaatatcatacaatatatcatattatatacagccattcaaatatacgaattgaaagagacaattaactattcacaatatgtgtaatgctgcaaattgattta
gi|17 : agatatctaatcttcatttcagtcttat--------T------GT-CAT--GGCCATTCAAGTG-A-A---TGAAT-TACAAGAGACTATCGCAGGATACACATAA-----------CAATTAAATATCAGT-----TACAAATTATGAC--TGTGttta
gi|19 : atttt-TATTT-AATATTTATTT-------ATCTATGCACA--TCACAAT-AATAA--TAATAGC----ATCAATAT-CATACAATA
gi|2 : gtgctaatgAT-TATAACTTAA---CTCGAATGGATAT---TACAATAC----A-----------------ATAT--A--CATTCATAT-TAAA---TGAAT-TACAAGAGACTATCACACAACGCAAAATA-----------CAATAAACTAT---A-----TTCATAAAAAGACTATATGTGTAATGC-TGCAAATCGA
gi|20 : actttatttaacacacactctggtgcattTTTTTACAATGTAGGTCCTAAC-TTG---ATAGGTCGCTATGCC----TATTATA-TAACTC---AGAATATAtttattaattctgtgtttagattaacaaaaatactactatgacaagaaaaaaacgagcactattgcgcaaaataaaaaatatcttgaagtatccactctgatcagatcagaaaataaactatttgcagcaaacacatggatgttgatataaaggtattattattcatattaaacaaaagt
gi|3 : AT-T-TTT-A--TTTTATTTCCGTCTCATC-AT--ACA--AAGCAAT-AATAG--TTA---C----ATTTATAT-CATAGAATAT----A--------T------GTACAT--AGCCCTTCAAAT-----------AT-TACAAGAAAAT-TCACGTAATGCAAAAGC-----------CAATTAACTAT---T-----CGCAAAACAAGAC----CGTGTAATTC-TCAAAATCGA
gi|4 : ATTTGAATATTTATATAATTCTCATCTATGCAAA--ACACAAT-AATAA--TAC---A----AGGAATAT-CATGAAATAT----A--------T------GTACAT--AACCATTCTAATATGTGCATTGGAG-CACACGAGGCTATCACGTGATGCCAAACT-----------CAATTAACTGC---T-----TACATAATAAGAC---ATATGTCATGC-TGCAACTCtttattaaacgtgtattaagaaaaacaaaatactaaaactctgtcaagataaaaagagcggtattacgcaatataaaaaaactatcttaaaatattgagtatatcctctcagatcaggaaaaaaatatttacactgatatatgat
gi|5 : aaaaatataaccatttttgttgtacatctaaaTATA---TGAATGTA---GAGACTATCACACGATGCAAAATA-----------CAATTAATTAT---T-----TACATAATAAGAA--CATGTGTAATGC-TGCAAGTCGActttaattaaaactgttacggttaacagacatgctatgcagttataacaagaaaatagaacactattactataaaa
gi|6 : g---GTATT-TACTGACCCTAGAAAATGTTTTTATATT--TATT---TATGT-AATCTGTATTTAAGTTTAA-CTATGCACATCACACCATTAACAA--TGC---C----ATCACTAT-CACGCAATAC----G--------T------GCACAT--AGCCATTTA------------GAAT-CACAGGA------TACGCAATACA----A-----------TCATTGTCTAT---CATATGTATATGATAAGAC--TACGTGCAATGCTTGCAAATttcatcaaatgtgtgttaagatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcatacacataggagttgataaaaaggttactcttatacttatacaacaaaagcg
gi|7 : caATAT-TTATT--TAT--ATTT-AATATTTATTTCA-TCCGATCTATGTACA--ATACAAT-AATAA--------C----ATCGAAAG-AATGCAA-------------------------------AGCCATTCAAATATAT-----GAAT-TATAAGAGCCTTTCACACAATGCAAAAAAGCAAAAAAAAACAATAAACTAT---T-----CACAGTTTAAGAC--TATGAATAATGC-TGCAAACCGAaaatgcattaaaagtgaaaagatcagaaaatactctgatccaaaacagaggtgggggtacaagaaaaa
gi|8 : tttaTTTTTGCAATGTAGGTCCAAAC-ATG---ATAGATAGCTATGCTTCAGTATTAAA-TAACTC---AGAATATATATATATTATTATTAT-TATTT-AATGTTTATTTCAGTCTCATCTATGAACA--ACGCACT-TTTAA--TAA---C----ATCAATAC-CATACAATATTATTA--------T------GTACAT--GGCCATTAAAATATATA---TGAAT-AACAAGAGACTATCACATAATGCAAAAGA-----------CAAATAACTAT---T-----CACATAATAAGAC--TATGTGCAATGC-TTCAAATCGAtacatcaaaagtgtattaagataacaaaaatactaaaactttgacgataaaaagaacactttttgcgcgaaaatgatac
gi|9 : CTATCACACAATGCAAA--------------CAATTAACTAT---T-----CACATAATAAGAA--TGTATGTAATGC-TGCAAATC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGTTAGGTTTTGCAAATTTCTCATATTGTCATGTATACCATGAATTGAGTGAATAAACTATTGAAATTGAATTGAATTGC
Unaligned ( gi|21 ): TAATGCTGCAAATCGATTTATTAACAGTGTGTTA