lowQualScore                  :                                                                                                                                                            33333333333333333333333333333333333333333333333333333333333333333333333333333333                                                                                                                                                                                                                                                                      55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555                                                                                                                                        11111111111111111111111111111111111111111111111111                                                                                                                                 
lowQualScore                  :                   5555         1          22         2   4444444444    1             111             4                       666666       11     1         00000000000000000000000000000000000000000000000000000000000000000000000000000000       1      1     1       666666666666           2222         444444            33333333          2222   1                             99999999999999999          1               1                      1         1           1111                2222    1        66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666                        111   111   1111           22           555555555555555555555555555555555555555       1  1111111111             22222222222222222222222222222222222222222222222222            44444444             33333      1111       5555555555555                   1           666666666666        2222      
lowQualScore                  :                 6 2222         5 3        00         0   6666666666    5    77 2     555             0      6    6      6    111111       22     7    6    88888888888888888888888888888888888888888888888888888888888888888888888888888888       5      5   6 5    6  888888888888           9999         555555   1        33333333          1111   5 3         7    2            11111111111111111     1    5  0       9    5      8     1    2  6 1         9 3    0    3333   9999 22 5    2222    5        11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111         6 4       11   111   000   2222 1   0 8   55     5 1   999999999999999999999999999999999999999  888  0  4444444444   1         44444444444444444444444444444444444444444444444444          6 22222222   6   99    88888      7777    3  8888888888888      6  3         5  8   4    222222222222        9999    6 
lowQualScore                  :                 . ....         . .        ..         .   ..........    .    .. .     ...             .      .    .      .    ......       ..     .    .    ................................................................................       .      .   . .    .  ............           ....         ......   .        ........          ....   . .         .    .            .................     .    .  .       .    .      .     .    .  . .         . .    .    ....   .... .. .    ....    .        ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................         . .       ..   ...   ...   .... .   . .   ..     . .   .......................................  ...  .  ..........   .         ..................................................          . ........   .   ..    .....      ....    .  .............      .  .         .  .   .    ............        ....    . 
lowQualScore                  :                 0 0000         0 0        00         0   5555555555    0    00 5     000             0      0    0      0    000000       00     0    0    00000000000000000000000000000000000000000000000000000000000000000000000000000000       0      0   0 0    0  333333333333           3333         000000   0        88888888          2222   0 0         2    2            22222222222222222     0    0  7       0    0      3     2    2  8 4         4 2    6    2222   0000 88 6    2222    0        88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888         7 8       99   000   000   1111 7   5 2   99     7 3   888888888888888888888888888888888888888  888  2  2222222222   4         33333333333333333333333333333333333333333333333333          7 00000000   7   00    22222      5555    2  3333333333333      0  7         0  3   7    333333333333        0000    0 
consensus                     : NNNNNNNNNNNTGTATATGCAGATGATGCTACANTTTATGATANTCAATCAGACTAAGGCAAATCTCGAACGAAATNNANAGTGTNTACTAAATTATCTTT-AAACTGATGTAAAGAGAACGGAAAGCAAATAAACAGCAACAAAACAAAAGTCATGTTCATAACAAGGCGAAAACATATAAGCATTGATAATTATTCACGTATGCTTAAACATAGTAACATTCAGCAATCCTTCACAGCAGCTGATAAAATAATAGGTATAA------------ACATGCAATGGAACACACATTTTC-----GTATGTATATAAATTATATCGTCTTGTTTGT----GGCTTNTATCTAGGANACGGCCATATTTATCAATTGAACAC-------A-TTTTACAATG-ATACATATTATCTCATCTAAATAACTGCCGTACCATGTAAGGTCATTCTTCTATATTTAAT--ACATGTAAAGTTACAAAG-T-TGCAGAGAAGAGC-----ATGT--A--ATT---ATATAAAAA-A--ATCAATATGTT--TG---GTCTAGAAA---AT---A-ATCTC--ACTTA---TGTGCTGTCTTTTGAACAAATTGT-TTT--TTTATT--AAAAAGNTAAAACTATGTACACGATAGNTAA-TGGAATGTCNCCGGCATA-----TT--TAAA------CG-----------A--------A-TGTT-------AGAACAAATGACGAG----------CAA--NANA-C-----------GTTAAAACN---------C--------TTTATAAT----AC--C-A-AACAC-TAANAATGAA---ATGTTTAAG-GGGAGTTTGTCATATTCT--GNAATAAAAATATGG---------AACGCCGTT----CNACTTAAAA----------------------TTA------------C------------TTTA-AACATATTCACAG-ATAAATTCCTGAATTGGGTA---AAA----TGCGAAAGTAGAATTTAA-ATAAATTGCCAT---------TNA-----TGAA-----------AA---TAACA---ACT----AGCGTTTATTGGT----A------------T-----------TNT---T------------T-TTTTAGTTTG-T-NT----NTTT-GTTANTTTTCAGTTTGTTTT--CGTTGTATTATA-ACATAA---TATTTTGTANATTTATCACGAATACANTTTA-GTTATATGATATAATATGATTTACTTTAT
Reference ( gi|1 )            : CCGTTTGAAATTGTATGT-TATATGATACTAAAATTTATGATTTTCAATTAGA-TAAGGCAGATCGTGAACTAAATTTACAATGTTCGCTAAATTATCTTTTAAACTGGTGTAGAGAGAATGGAATGTTA-TAAACAGTGACAAATCAAAGGTCA---------CAGCGTAAAAGCGTATACACATCAGTAATAATTCACCTAT--------------ATATTTAGCTATA----ACAGCAGGTGATAACATAGTCGGTACAA------------ACATGCAATGGGATGCACATTTTC----TGTATATATATAAATTATACCGTCTTGTTTGT----GACGTTTATCTAGGATACGGTCATATTTATCAATTAAACACTGTTTATAGTTTTATAATGCATGCATATTACCTCAGCTAAATTACTGCTGTACTATATGAGGTCATTCATCTATATTTAAT--ACATGTAAAATTATAAAC-T-TGCATAGAAGAGC-----A-----A--ATT---ATACAAAAATA--GTCAATACACTACTGACAGCCTAGAAA---ATG-CACGTTTCCCACTTA---TGTGCTGCCTTTTGAACAAACTGT-TAA--TTTATT--AAAACGTTCAAACTGTGTACATTATACATGA-TGAAAT-TCACCGACAAA-----TA--TAAA------CG-----------A--------A-TG---------AGAACTAATGATGAG----------CAA--CACA-C-----------ATTAAAACC---------C--------TTTATAAT----AT--C-A-AACAC-TAGCAATGAA---ATATTTAAA-GGGAGTGTGACCTATTCT--AGAACAAAAATATGG---------AATGCTGTT----CTACTTGAAA----------------------TTA------------C------------TTTA-ATCGTATTCACAA-ACAAATTCCCGAATTAAGTA---AAA----TGCGAAAATAGCGTTTAA-ATAAAATGTCGT---------TTA-----CGAA-----------AA---TATCA---ATT----AGCGTTTATTGGT----A------------T-----------TGC---T------------T-TTTTAGTTTG-T-GT----ATTT-GTTGTTTTTCAGTATGTTTT--CATTGTATTACAAACATAATTATATTTTATACATTTATCATTAAAACATTTTA--TTATTTTATGTAATATGACGTTCTTTGTGATACGATAAACTTATTTTAAGAGAGCCTCAATGA
gi|2                          :            TGTATATGCAGATGATACTACACTTTATGATAGTCAATCAGACTAA------TTTCGAACGAAATTGAAAGTGTTTACTAAATTATCTTT-AAACTGATGTAAAGAGAACGGAAAGCAAATAAACAGCAACAAAACAAAAGTCATGTTCATAACAAGGCGAAAACATATAAGCATTGATAATTATTCACGTATGCTTAAACATAGTAACATTCAGCAATCCTTCACAGCAGCTGATAAAATAATAGGTATAACTATCGACGACAACATGCAATGA-------ATTTTA-----ATATGTATATAAA--AAATTGTCTTGTACGT----GACTTGTATCAAGAAGATGGCCATATTTATAAATTGTACACAGCTTATACTTTTATATTGCATACACATTATCTCATCTAAAAAACTGCAGTACAATAT-AGCTCATTC-T-----TTTAATAAACATG--------TAAAC-TCTGCAGAGAAGAGC-----ATGTAGA--GTT---ATTTAAAAA-A--ATCAACATGTTA-------------------------GTCTCCAACATA-------------TTAGAACAAATTGT-T----TTAAAT--AAGA-G--CAAATGGCGAACACGATACAT-----CAAT-ACACT-------------------------------------------------TG---------AGATC-AATGAC-AG----------AAA--GAAA-C-----------GTTA---------------------------TAGT----AC--C-G-AAAAC-TAAAATTGAA---ATGTCTAAG-GTGAGTTTCTCATATTAT--CTAATAAAATTATGGAAATAAAAAAATGGCGTT----T--CTT-----------------------------------------T------------TTTA-AACATATTCACAA-ATAAATTAACTTATTGGGTA---AAA----TGCGATAGTAGAACTGAACAGAAATTGTCATAATCGTTAATTA-----TTAAATGACTTTTGGAA---TATCACGTATTTCACAAC-TGAATTGAT----A------------T-----------TTC---TTTTTAATTTGATT-TTTTAGTTTG-T-AT----TTTT-GTTATTTTTTTG-GTGTTTT--
gi|15                         :                 ttttacataATGCTACAATTTATGATATTCAATTAGA-TAAGGCAAATCTCGAACGAAATATACAATGTGTATTAAA
gi|3                          :                                                                                                                                                                                                                                                    acagatttatatccagagtA------------ACATGCACTGGAATACACACCTTC----AGTATGTATATATGTTAT-----CTTGTTTATAAATGACCTTTATCTAGGACGCGGCCATGTTTATCAATTGAGTAC-------AGTTTTACAATAAATACATATCATCTGATCTAAATTATTGCTGTATTATGTAATGTGATTCTCCTATAGTTAAT--TCATATATAAATACAAAA-T-TACAGCGTA---------A-----A--ATT---ATGCAAAA-CA--ATCAATATGTT--TG----TCTAAAAAGAAAT----CATTTC----TTAAAATATGTTGTCTTTTGAACCAGTTG--TAT--TTTATTA-AAAATGTTACAGC-ATATACACGATAGTTAA-TGGAATGTCTCTGGCATA-----TT--TAAA------CGGATTAAAATCAA--------A-TT---------AAAACAAATGACGAAATAGGTACATCAA--CAAA-CTTGGGGTCAATGTCAAAATT---------CTGTAAAACTTTATAAT----AC--CGA-AACCT-TATT-ATAAA---ATGTTTAAG-GGAAGTTTGTCATATTCT--GTAGTATAAATATG-----------ATAC-GTCAAAACT--TTGAAA----------------------TTAAAAATTCCATTTC------------TTTA-AACATATTCACAGTAC--ATTCCTAAATC-GGTGTTTAAA----TATGATAGTAGAATTTAA-ATAAATTGCCAT---------TAA-----TGAA-----------AA---TAACA---ACT----AACGTTTATTGGTA---A------------A-----------TGT---TTA----------T-TTTTAGTTTA-T-TTTCTGGCTT-GTTGCATACTAGTTTGTTTG--TGTGATATTATA
gi|5                          :                                                                                                                                               aacaaagagacttaaactgaggtataatgaaagtgaatgactatccacttatgcttacaaaagataacattgaggtatcgtaaaaacaggcaataaagtattatatataaatgtcgacgac------------ACATGTAATGGAACACACATTTTCAATATATATATATATAAAT---ATCCTCTTGTTTAT----GGCTTGTATCTAGGAAATGGTATTATTTATCAA-----------------TTTCACAATG--TGCATATTGGCTCATCTATATAACTGCCTTGACATGTGGAGACATTCTTCTATAGTGAAT--TCATGTTAAGTTACAGAA-T-CGCAGAGAAGAGCATGTAA-----A--ATT---ATAAAAAAAAAACATCAATATGTT--T----GTTTAGAAA---A----A--------AC--------TGCTGTA-TTTGAACAAACCGT-TTGCTTTTATC--AAAAGGACAAAAATATGCACACAATA-GTAAGTGAGTG-TCCCCGATACG-----TT--TAAA------CG-----------AAACGCATCA-TGTT-------AGAACGATTGACGAG----------CAAGCTACACC-----------ATTAtttatcaagaaacattctatgcaattcgatacactt
gi|16                         :                                                                                                                                                                                                                                                                                        tgataaaatatcggccaaaatatcgacgacgACATCAAATATATCGTCTTGTTTGT----GGCTTTTATATCTGATACGGCCACATTTATCAAATGAACAcgctcgaggtcaat
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                           GCTGTTCCAT-TTAGGTCATTCGTTTATATTTGA---A-AT-TGAAGTT-TAAAGGT-TGCAGAGAAGAGC-----A---------TTGCCATATAAAA------------------TGA-----TACAAA---ATGATAAATCTATTACT------GTACTATCTTTTGAACGAATTGTGTTT--TCTATT--AAAAATGTAAAATTATGTAAAATATA-GTAAATGGATTATAGTCGGTAAAATATTTAATTAAATTGTTTCA-----------T--------A-TG---------AAAACAAAAGACAAG----------CAA--TATA-C-----------TCCAATGCCAAACGTAAAC--------TTTATAATTAAAATGAC-ATAATA--TAAAAAAAAATTCATGTTTAAG-GGGAATTTGTCTTATGAT--ATAACAAAA-CATGG---------AACGCTATT----CAACTTAAAAACTTGCAAACGTAAAAATGCCGTTT------------C------------TCTA-AACATATTCACAA-ATAAATTTCCGAATTAGTTT---AAA----TGC-AATCTA--ATTTAA-AGAAATTGTCA----------TAA-----TGAA-----------AA---CAGCA---ACT----AGCTTGTATTGAT----A--------------------------A---T------------T-TTTTA
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                              GTACTATATAGGGTCATTCTTCTATATTTAAT--ACATGTAAAATTACAAAG-A-TGCAGAGAAGAGC-----ATGT--AGCATT---ATATAAAA--G--ACCAATATGTT--T----GTCTAGATA---A---CA-----------TA---TGT-----CATATGAACAAATTGT------TTTATTTAAAAAATTTAAAACTTTGTACAAAATAGTTTA-TGGAATGTCCCTTTCATA-----TT--TAAA------CG-----------A--------ATTGTTTCAAATTAGTACAAATGGTGAG----------CAA--AATA-C-----------ATTAAAACA---------C--------T---TGAG----GT--C-A-AACA
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       --------TTTATAAT----AC--C-ACAAC-C-TA---AT------ATGTTTAAATGGGAGTTTGTTATATTCT--GGAATATAAATATA----------AAT----TT----CCACTTGAAA----------------------TTA------------CAAATTACATTTCTTTAGATT-TATTCACAG-ATAAATTCCTAAATAAGGTA---AA-----T-------TAG----TAA-ATAAA----TGT---------TTA-----TGAATGAA-------AA---TAACA---ACT----AGCGTTTATTGGT----AAATATATAATAAC-----------TAT---T------------C-TTTTAGTTTG-T-TG----CTTT-GTTATTTTTCAAC-TGGTTT--TGTTGTATT----ACAT-ATT-TATTTTGTACATTTATTACGAATACAATTTACGTTATATGATATAtaaactctataattccggaacataataatgaca
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       --------TTTATAAT----A---C-A-AAAACGTAATAATGAA---ACGTTTAAT-CGGAGATTGTCATATTCT--GGAAC-AAAATATGG---------AACGCTATT----CGAATTAAAA----------------------TTA------------ct
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         caatacatttgaagtcaatgtcaaacagataATTTAA--GGAAGTTTATCATATTCTGGAGAAAAATAATATGG---------AACTCCATT----ACACTTAAAA----------------------TTA---------------------------------------A-AG-AGAAATTCCTGAATTGGGTA---AAA----TGCGAAAGTAGAATTTAA-AGAAATTGCC-------------A-----TGAA-----------AA---TAACA---AAT----AACATTTATTGaaaatatcgtttg
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            tacttataagcaa------------TTTA-A-CATGTTCACAA-ATAAATTTATAAATAGAGTA---AAATGACTGCGAAAGTAG
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         tctATACCTGAAATGGACA---AAA----TACGAAAGTTGAATTTGA-ATAAATTGT-------------TA-----TGAA-----------AAAAATATC------T----AACGTTTATTGGT----A------------TA----------TAC---TA-----------TATTTTAGTTTGAT-GT-----TTT-aaattgtcatgaaacacaaccgcttacgtatattgtcaaatgaatttttggagggccacagattgtataattgttaggacgatattccttttctgtattgttttatgtgtttgtttgttgtttttcagattgtttttgttatattacacattttgt
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    aatgCGAAAGTAGAATTTTA-ATATATTGCTAT---------TTAATTAATAAA-----------AA---TAACA---ACT----AGCGTTTGTTGGTGAGAA------------T-----------TTT---C------------T-TTTTGATTTG-TTGTT---ATTT-GTTTATTTT-------TTTTGACAATGCATTATACACACA------TTTTGTATATTTATCATGAATACACTTTA--TT--------TAATATGATTTACTTTA
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAGTGTCAT---------TAA-----TGAA-----------AA---TAACA---ACA----AGCGCTTATTGGT----A------------TATAACTATATATGTATTT------------C-TTTTAGTTCG-T-TT----TTTTTGTTAATTTCCATTTTGCTTT--AGTTGT-TTA---ACATAA--ATATTTTGTAAACTTATCATGTAAACATTTAAAGTTATATGATATAATa

Unaligned ( gi|14 ): TATCAGGATATTGTATTGATGCAAATAACGAGCACTACGTATCAATACACTTGAGGTCAACGACAAACAGCAACTATATAATACAGTATCCTGATAACGAAATG

lowQualScore                  :                                                                                                                                                                                                                                                                       11111111111111111111111111                                                                                                                                                                                                                                                                        1111111111111111111111111111111111111111111111                                                                                             1111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
lowQualScore                  :                   1                                  2                                               2                            1                        333333333                                        222222222222               3333                           00000000000000000000000000                       222                               1111                                         88888888888888888          333                                                                                              2222222222          111111111         0000000000000000000000000000000000000000000000                  22222                                  1111              11111             0000000000000000000000000000               2222222222        8888888888888888888888888888888         2222222   111  1111          111                                             222222222222222222222           77777777777777777777777777777   1111                                         1111                           2222222222   11111             11111               111111111      88888888888888888888888888888888888888888888888888   222222222       11111111        222222222222                   111        1111    33333333                            1  22                            
lowQualScore                  :                   5        0     1         1     0   3   6   4              22 1 0   1               0                       4  4 5              4         888888888   2             3                  6   999999999999       3   8   6666       6          4        11111111111111111111111111          9999         888          1 77 8 0             7777     1         1                   44    33333333333333333          333         0           4     4    2  2 88               7    7    1    2   1   3                7777777777     0    555555555       6 8888888888888888888888888888888888888888888888    3           6 33333         6  6 1      33      44   3333     1 5  1   11111 0           0000000000000000000000000000     6      1  9999999999   1 1  6666666666666666666666666666666         1111111   111  3333   1 555  000         5                   1  66   77      333333333333333333333   6    2  44444444444444444444444444444   2222    0                66   2      555     0000 0   2     4      4 1      3333333333 2 00000   55  4     00000     8888      666666666      33333333333333333333333333333333333333333333333333   000000000       66666666   5    888888888888  5  1 6 8888      666     0  8888    33333333        1        2   4   1  0  55  333 2  0         3 4      
lowQualScore                  :                   .        .     .         .     .   .   .   .              .. . .   .               .                       .  . .              .         .........   .             .                  .   ............       .   .   ....       .          .        ..........................          ....         ...          . .. . .             ....     .         .                   ..    .................          ...         .           .     .    .  . ..               .    .    .    .   .   .                ..........     .    .........       . ..............................................    .           . .....         .  . .      ..      ..   ....     . .  .   ..... .           ............................     .      .  ..........   . .  ...............................         .......   ...  ....   . ...  ...         .                   .  ..   ..      .....................   .    .  .............................   ....    .                ..   .      ...     .... .   .     .      . .      .......... . .....   ..  .     .....     ....      .........      ..................................................   .........       ........   .    ............  .  . . ....      ...     .  ....    ........        .        .   .   .  .  ..  ... .  .         . .      
lowQualScore                  :                   0        7     0         0     7   3   7   0              00 0 7   0               0                       0  0 5              0         555555555   5             0                  7   000000000000       7   3   0000       7          7        66666666666666666666666666          0000         000          4 00 0 8             0000     0         0                   22    22222222222222222          222         8           0     6    2  2 33               2    3    0    2   0   7                2222222222     3    555555555       0 2222222222222222222222222222222222222222222222    2           7 00000         7  7 0      55      77   5555     8 2  0   88888 3           0000000000000000000000000000     0      0  2222222222   0 0  0000000000000000000000000000000         7777777   222  0000   0 000  000         7                   0  11   99      000000000000000000000   6    3  44444444444444444444444444444   1111    3                99   2      111     6666 2   1     6      4 7      0000000000 4 00000   55  0     00000     5555      000000000      77777777777777777777777777777777777777777777777777   000000000       44444444   0    111111111111  7  7 6 3333      111     8  2222    00000000        0        0   0   0  0  00  888 5  8         0 0      
consensus                     : NNNNNNNNNNNTGTATAT-CAGATGATACTACAATTTATGATATTCAATTAGA-TAAGGCAGATCTCGAACGAAATTTACAATGTTTACTAAATTATCTTTTAAACTGGTGTAGAGAGAACGGAANGCNAATAAACAGCGACAAANCAAAGGTCATGTTCATAACAGNGCGAAAGCGTATACGCATCGATAATTATTCACNTATGCTTA-A-A-GGTAACATTNAGCTATC-T--ACAGCAGGCGATAAAATANTAGGTATA------------AA------------CATGCAATGGAATACACATTTTC-G-TATGTATATAAATTA-TATCGTCTTGTTTGT----GACTTTTATCTAGGANACGGCCATATTTATCAATTGAACAC--------GG-------TTTTACAATGCA-TGCATATTATCTCATCTAAATNACTGCTGTACTATATAAGGTCATTCTTCTATATTTAATACATGTAAAATTACAAAGTTGCAGAGAAGAGCATGT--A--A--TTATATAAAAN-AA---T-CAATATGTT--TG---GTCTAGAAAATA-A----T--TCACTT---ATGTGCTGTCTTTTGAACAAATTGT-TT--T-TTTATTAAA-AA-GNTAAAACTATGTACACGATAGTTAATGGAATGTCNCCGAC---ATATTTAAACGAA--------T---------GTT-------AGAACAAATGACGAG----------CAANANAC-----------GTCAAA---AC--------ACTTTATAAT-------ACC-A-AACAC-TAATAATGAA---ATGTTTAAG-GGGAGTTTGTCATATTCTGGAACAAAA--ATATGG---------AACGCCG-----TTCNACTTAAA------A--TTAC----------------TTT----AAACATATTCACAGATAAATT--CCTGAATTGG-G-TAAAA----TGCGAAAGTAGAATTTAA-ATAAATTGTCA------TTNA-----TGA--AA-ATAAC-----AACTA----GCGTTT---------ATTGGT----A------------T-------------TNT------------T-T-TTT---------TAGTTTGTNT----NTTT-GTTA-----------TTT-TTCAGT-T--TGTTTT--CGTTGTATTAT-AACATA---A-T-ATTTTGTACATTTATCATGAANACATTT-TA-GTTATATGATATAATATGACGTNCTTTGT
Reference ( family-780 )      : NNNNNNNNNNNTGTATATGCAGATGATGCTACANTTTATGATANTCAATCAGACTAAGGCAAATCTCGAACGAAATNNANAGTGTNTACTAAATTATCTTT-AAACTGATGTAAAGAGAACGGAAAGCAAATAAACAGCAACAAAACAAAAGTCATGTTCATAACAAGGCGAAAACATATAAGCATTGATAATTATTCACGTATGCTTAAACATAGTAACATTCAGCAATCCTTCACAGCAGCTGATAAAATAATAGGTATA------------AA------------CATGCAATGGAACACACATTTTC-G-TATGTATATAAATTA-TATCGTCTTGTTTGT----GGCTTNTATCTAGGANACGGCCATATTTATCAATTGAACAC--------A--------TTTTACAATG-A-TACATATTATCTCATCTAAATAACTGCCGTACCATGTAAGGTCATTCTTCTATATTTAATACATGTAAAGTTACAAAGTTGCAGAGAAGAGCATGT--A--A--TTATATAAAAA-AA---T-CAATATGTT--TG---GTCTAGAAAATA-A----TC-TCACTT---ATGTGCTGTCTTTTGAACAAATTGT-TT--T-TTTATTAAA-AA-GNTAAAACTATGTACACGATAGNTAATGGAATGTCNCCGGC---ATATTTAAACGAA--------T---------GTT-------AGAACAAATGACGAG----------CAANANAC-----------GTTAAA---AC--------NCTTTATAAT-------ACC-A-AACAC-TAANAATGAA---ATGTTTAAG-GGGAGTTTGTCATATTCTGNAATAAAA--ATATGG---------AACGCCG-----TTCNACTTAAA------A--TTAC----------------TTT----AAACATATTCACAGATAAATT--CCTGAATTGG-G-TAAAA----TGCGAAAGTAGAATTTAA-ATAAATTGCCA------TTNA-----TGA--AA-ATAAC-----AACTA----GCGTTT---------ATTGGT----A------------T-------------TNT------------T-T-TTT---------TAGTTTGTNT----NTTT-GTTA-----------NTT-TTCAGT-T--TGTTTT--CGTTGTATTAT-AACATA---A-T-ATTTTGTANATTTATCACGAATACANTT-TA-GTTATATGATATAATATGATTTACTTTAT
gi|1                          :            TGTATGT-TATATGATACTAAAATTTATGATTTTCAATTAGA-TAAGGCAGATCGTGAACTAAATTTACAATGTTCGCTAAATTATCTTTTAAACTGGTGTAGAGAGAATGGAATGTTA-TAAACAGTGACAAATCAAAGGTCA---------CAGCGTAAAAGCGTATACACATCAGTAATAATTCACCTAT--------------ATATTTAGCTATA----ACAGCAGGTGATAACATAGTCGGTACA------------AA------------CATGCAATGGGATGCACATTTTCTG-TATATATATAAATTA-TACCGTCTTGTTTGT----GACGTTTATCTAGGATACGGTCATATTTATCAATTAAACACTGTTTATAG--------TTTTATAATGCA-TGCATATTACCTCAGCTAAATTACTGCTGTACTATATGAGGTCATTCATCTATATTTAATACATGTAAAATTATAAACTTGCATAGAAGAGCA-----A--A--TTATACAAAAATAG---T-CAATACACTACTGACAGCCTAGAAAATGCACGTTTC-CCACTT---ATGTGCTGCCTTTTGAACAAACTGT-TA--A-TTTATTAAA-AC-GTTCAAACTGTGTACATTATACATGATGAAAT-TCACCGAC---AAATATAAACGAA--------T---------G---------AGAACTAATGATGAG----------CAACACAC-----------ATTAAA---AC--------CCTTTATAAT-------ATC-A-AACAC-TAGCAATGAA---ATATTTAAA-GGGAGTGTGACCTATTCTAGAACAAAA--ATATGG---------AATGCTG-----TTCTACTTGAA------A--TTAC----------------TTT----AATCGTATTCACAAACAAATT--CCCGAATTAA-G-TAAAA----TGCGAAAATAGCGTTTAA-ATAAAATGTCG------TTTA-----CGA--AA-ATATC-----AATTA----GCGTTT---------ATTGGT----A------------T-------------TGC------------T-T-TTT---------TAGTTTGTGT----ATTT-GTTG-----------TTT-TTCAGT-A--TGTTTT--CATTGTATTACAAACATAATTA-T-ATTTTATACATTTATCATTAAAACATTT-TA--TTATTTTATGTAATATGACGTTCTTTGT
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ccgtttgaaatAAGTGTCA------TTAA-----TGA--AA-ATAAC-----AACAA----GCGCTT---------ATTGGT----A------------TATAACTATATATGTAT------------T-TCTTT---------TAGTTCGTTT----TTTTTGTTA-----------ATT-TCCATT-T--TGCTTT--AGTTGT--T-T-AACATA---AAT-ATTTTGTAAACTTATCATGTAAACATTTAAA-GTTATATGATATAATgatacgataaacttattttaagagagcctcaatga
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AC-TTATAAGCAA---AT--TTAAG-GA-AGTTTATCATATTCTGGAGAAAAATAATATGG---------AACTCCA-----TTACACTTAAA------A--TTA----------------------------------A-AGAGAAATT--CCTGAATTGG-G-TAAAA----TGCGAAAGTAGAATTTAA-AGAAATTGCC----------A-----TGA--AA-ATAAC-----AAATA----ACATTT---------ATTGtt
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tTTTATAAT-------ACA-A-AA-ACGTAATAATGAA---ACGTTTAAT-CGGAGATTGTCATATTCTGGAAC-AAA--ATATGG---------AACGCTA-----TTCGAATTAAA------A--TTA
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             caatacatttgaagtcaatgtcaaacagataATA--CCTGAAATGG-A-CAAAA----TACGAAAGTTGAATTTGA-ATAAATTG----------TTA-----TGA--AA-AAAAT-----ATCTA----ACGTTT---------ATTGGT----A------------TA------------TAC------------TATATTT---------TAGTTTG-AT----GTTT-aaaatatcgtttg
gi|15                         :          aatgTATATCCAGAGTATGCTACAATTTATGATATTCAATTAGA-TAAGGCAAATCTCGAACGAAATATACAATGTGTATTAAAt
gi|16                         :                                                                                                                                                                                                                                                                                                                         acagattACATCAAATA-TATCGTCTTGTTTGT----GGCTTTTATATCTGATACGGCCACATTTATCAAATGAACA
gi|2                          :            TGTATATGCAGATGATACTACACTTTATGATAGTCAATCAGACTAA------TTTCGAACGAAATTGAAAGTGTTTACTAAATTATCTTT-AAACTGATGTAAAGAGAACGGAAAGCAAATAAACAGCAACAAAACAAAAGTCATGTTCATAACAAGGCGAAAACATATAAGCATTGATAATTATTCACGTATGCTTAAACATAGTAACATTCAGCAATCCTTCACAGCAGCTGATAAAATAATAGGTATAACTATCGACGACAA------------CATGCAATGA-------ATTTTA-A-TATGTATATAAA--A-AATTGTCTTGTACGT----GACTTGTATCAAGAAGATGGCCATATTTATAAATTGTACAC--------AGCTTATACTTTTATATTGCA-TACACATTATCTCATCTAAAAAACTGCAGTACAATAT-AGCTCATTCTTTTA-A--TAA-ACATGTAAACT-------CTGCAGAGAAGAGCATGTAGA--G--TTATTTAAAAA-AA---T-CAACATG-T--TA---GTCTCCAACATA-------------TT---A-------------GAACAAATTGT-T---------TTAAATAA-GAGCAAATGGCGAACACGATA-------------CATCAAT---ACACTTG----------------------------------AGATC-AATGAC-AG----------AAAGAAAC-----------G---------------------TTATAGT-------ACC-G-AAAAC-TAAAATTGAA---ATGTCTAAG-GTGAGTTTCTCATATTATCTAATAAAA--TTATGGAAATAAAAAAATGGCG-----TTT--CTT---------------T----------------TTT----AAACATATTCACAAATAAATTAACTT--ATTGG-G-TAAAA----TGCGATAGTAGAACTGAACAGAAATTGTCATAATCGTTAA-----TTATTAA-ATGACTTTTGGAATATCACGTATTTCACAACTGAATTGAT----A------------T-------------TTCTTTTTAATTTGAT-T-TTT---------TAGTTTGTAT----TTTT-GTTA-----------TTT-TT---T-TGGTGTTTT--
gi|3                          :                                                                                                                                                                                    ttttacataATGACTATCCACTTATGCTTACAAAAGATAACATTGAGGTATCGT-AAAAACAGGCAATAAAGTATTATATATA------------AATGTCGACGACAACATGCACTGGAATACACACCTTCAG-TATGTATATATGTTA-T-----CTTGTTTATAAATGACCTTTATCTAGGACGCGGCCATGTTTATCAATTGAGTAC--------AG-------TTTTACAATA-AATACATATCATCTGATCTAAATTATTGCTGTATTATGTAATGTGATTCTCCTATAGTTAATTCATATATAAATACAAAATTAC-------AGCGTAA--A--A--TTATGCAAAAC-AA---T-CAATATGTT--T----GTCTAAAAAGAA-A----TCATTTCTTAAAATATGTTGTCTTTTGAACCAGTTG--TA--T-TTTATTAAA-AATGTTACAGC-ATATACACGATAGTTAATGGAATGTCTCTGGC---ATATTTAAACGGA--------TTAAAATCAAATT-------AAAACAAATGACGAAATAGGTACATCAACAAACTTGGGGTCAATGTCAAA---ATTCTGTAAAACTTTATAAT-------ACCGA-AAC-C-TTATTATAAA---ATGTTTAAG-GGAAGTTTGTCATATTCTGTAGTATAA--ATATGA---------TACGTCAAAACTTTGAAATTAAAAATTCCA--TTTC----------------TTT----AAACATATTCACAG-TACATT--CCTAAATCGGTGTTTAAA----TATGATAGTAGAATTTAA-ATAAATTGCCA------TTAA-----TGA--AA-ATAAC-----AACTA----ACGTTT---------ATTGGTAA--A------------T-------------GTT------------TAT-TTT---------TAGTTTATTTTCTGGCTT-GTTG-----------CAT-ACTAGT-T--TGTTTG--TGTGATATTAT-A
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                          aacaaagagacttaaactgaggtataatgaaagtgaGCTGTTCCATTTA-GGTCATTCGTTTATATTTGA-A-AT-TGAAGTTTAAAGGTTGCAGAGAAGAGCAT-T-----G--CCATATAAAAT-GA---TACAAAATGAT--AA---ATCTA----------------TTAC------TGTACTATCTTTTGAACGAATTGTGTT--T-TCTATTAAA-AA-TGTAAAATTATGTAAAATATAGTAAATGGATTATAGTCGGTAAAATATTTAATTAAAT-------T---------GTTTCATATGAAAACAAAAGACAAG----------CAATATACTCCAAT-----GCCAAACGTAA--------ACTTTATAATTAAAATGACA-T-AATA--TAAAAAAAAATTCATGTTTAAG-GGGAATTTGTCTTATGATATAAC-AAA--ACATGG---------AACGCTA-----TTCAACTTAAA------AACTTGCAAACGTAAAAATGCCGTTTCTCTAAACATATTCACAAATAAATT--TCCGAATTAG-T-TTAAA----TGC---AATCTAATTTAA-AGAAATTGTCA-------TAA-----TGA--AA-ACAGC-----AACTA----GCTTGT---------ATTGAT----A------------A-------------TTT------------T-T-Ttttatcaagaaacattctatgcaattcgatacactt
gi|5                          :                                                                                                                                                                                                                                                                                    A------------CATGTAATGGAACACACATTTTC-AATATATATATATATAAATATCCTCTTGTTTAT----GGCTTGTATCTAGGAAATGGTATTATTTATCAATT-------------------------TCACAATG---TGCATATTGGCTCATCTATATAACTGCCTTGACATGTGGAGACATTCTTCTATAGTGAATTCATGTTAAGTTACAGAATCGCAGAGAAGAGCATGT--A--AAATTATAAAAAAA-AAACAT-CAATATGTT--TG----TTTAGAAAA-A-A----C--------------TGCTGTATTT-GAACAAACCGT-TTGCT-TTTATCAAA-AG-GACAAAAATATGCACACAATAG-TAAGTGAGTGTCCCCGAT---ACGTTTAAACGAAACGCATCAT---------GTT-------AGAACGATTGACGAG----------CAAGCTAC-----------a
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tgataaaatatcggccaaaatatcgacgacgTTTATAAT-------ACC-ACAAC-C-TAATA---------TGTTTAAATGGGAGTTTGTTATATTCTGGAATATAA--ATATA----------AAT---------TTCCACTTGAA------A--TTACAAATTACATTTC----TTT----AGATTTATTCACAGATAAATT--CCTAAATAAG-G-TAAA-----T-------TAG----TAA-ATAAATGTTTA------TGAA-----TGA--AA-ATAAC-----AACTA----GCGTTT---------ATTGGT----AAATATATAATAAC-------------TAT------------T-C-TTT---------TAGTTTGTTG----CTTT-GTTA-----------TTT-TTCAAC-T--GGTTTT---GTTGTATTA----CATA---T-TTATTTTGTACATTTATTACGAATACAATT-TACGTTATATGATATAaccattacgctcgaggtcaat
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTACTATATAGGGTCATTCTTCTATATTTAATACATGTAAAATTACAAAGATGCAGAGAAGAGCATGT--AGCA--TTATATAAAAG-A----C-CAATATGTT--TG----TCTAGA---TA-A--------CA--T---ATGT-----CATATGAACAAATTGT-TT--TATTTA--AAA-AA-TTTAAAACTTTGTACAAAATAGTTTATGGAATGTCCCTTTC---ATATTTAAACGAA--------TTGTTTCAA-ATT-------AGTACAAATGGTGAG----------CAAAATAC-----------ATTAAA---AC--------ACTTct
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  C----------------TTT----TAACATGTTCACAAATAAATT--TATAAATAGA-G-TAAAATGACTGCGAAAGTAG----------AAATTG----------TCA-----TGA--AACACAAC-----CGCTT----ACGTAT---------ATT-GTCAA-A------------T-------------GAA------------T-T-TTTGGAGGGCCACAGATTGTAT----AATT-GTTAGGACGATATTCCTT-TTCTGTAT--TGTTTT--gaggtcaaacataaactctataattccggaacataataatgaca
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tCGAAAGTAGAATTTTA-ATATATTGCTA------TTTAATTAATAA--AA-ATAAC-----AACTA----GCGTTT---------GTTGGTGAGAA------------T-------------TTT------------C-T-TTT---------TGATTTG---------TT-GTTA-----------TTTGTTTA-T-T--TTTTTTGACAATGCATTAT--ACAC----A-C-ATTTTGTATATTTATCATGAATACACTT-TA--TT--------TAATATGATTTACTTTATatgtgtttgtttgttgtttttcagattgtttttgttatattacacattttgt

Unaligned ( gi|14 ): TATCAGGATATTGTATTGATGCAAATAACGAGCACTACGTATCAATACACTTGAGGTCAACGACAAACAGCAACTATATAATACAGTATCCTGATAACGAAATG

lowQualScore                  :                                                                                                                                                                                                                                                                            11111111111111111111111111                                                                                                                                                                                                                                                                  111111111111111111111111111111111111111111111111                                                                                                                                                             111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
lowQualScore                  :                   222                                 1                                               1                            1                        333333333                                        555555555555555               4444    1                       00000000000000000000000000                       222                               1111                                         6666666666666666                                                                                                          22222222          222222          111111111111111111111111111111111111111111111111                     22222                                           111111                    99999999999999999999999999999               2222222222        000000000000000000000000000000000000000000000000000000000         111  22222222           222222222                                            222222222222222222222           888888888888888888888888888888888888888888888                                            1111                           22222222222222222              11111               111111111      8888888888888888888888888888888888888888888888          222222222                          111       555555555555555                                11  1                          
lowQualScore                  :                   222                                 3   6   3                                       5                       1  1 5              1         888888888   1             2                  1   444444444444444       1       9999    3    0         1        11111111111111111111111111          7 11         888          1 77 8 0             7777     0         1                   44    9999999999999999          8          0           1          0  0 88               7    7    1        1   3                77777777     0    111111  6       888888888888888888888888888888888888888888888888    7              6 33333         6  6 1      33      44   7777  2  000000  1      0          55555555555555555555555555555     6      1  9999999999   1 1  222222222222222222222222222222222222222222222222222222222      1  222  33333333     6 0   222222222        5                   0  0    999     333333333333333333333   6    2  111111111111111111111111111111111111111111111       0                66   2      555 3   0000 0   2     4      4 1      66666666666666666    55  4     00000     8888      666666666      5555555555555555555555555555555555555555555555          666666666          6  3 9  99      777     0 000000000000000         3            8      8  66  0       1           1      
lowQualScore                  :                   ...                                 .   .   .                                       .                       .  . .              .         .........   .             .                  .   ...............       .       ....    .    .         .        ..........................          . ..         ...          . .. . .             ....     .         .                   ..    ................          .          .           .          .  . ..               .    .    .        .   .                ........     .    ......  .       ................................................    .              . .....         .  . .      ..      ..   ....  .  ......  .      .          .............................     .      .  ..........   . .  .........................................................      .  ...  ........     . .   .........        .                   .  .    ...     .....................   .    .  .............................................       .                ..   .      ... .   .... .   .     .      . .      .................    ..  .     .....     ....      .........      ..............................................          .........          .  . .  ..      ...     . ...............         .            .      .  ..  .       .           .      
lowQualScore                  :                   000                                 3   7   7                                       5                       0  0 5              0         555555555   0             5                  0   000000000000000       0       0000    3    7         0        66666666666666666666666666          0 55         000          4 00 0 8             0000     6         0                   22    5555555555555555          8          8           0          3  3 33               2    3    0        0   7                22222222     3    000000  7       555555555555555555555555555555555555555555555555    5              7 00000         7  7 0      55      77   3333  5  888888  0      3          00000000000000000000000000000     0      0  2222222222   0 0  777777777777777777777777777777777777777777777777777777777      7  444  66666666     5 2   999999999        7                   7  4    666     000000000000000000000   6    3  000000000000000000000000000000000000000000000       3                99   2      111 6   6666 2   1     6      4 7      88888888888888888    55  0     00000     5555      000000000      8888888888888888888888888888888888888888888888          777777777          7  7 3  22      444     8 666666666666666         2            8      0  88  0       2           0      
consensus                     : NNNNNNNNNNNTGTATAT-C-AGATGATACTACAATTTATGATATTCAATTAGA-TAAGGCAGATCTCGAACGAAATTTACAATGTTTACTAAATTATCTTTTAAACTGGTGTAGAGAGAACGGAANGCNAATAAACAGCGACAAANCAAAGGTCATGTTCATAACAGNGCGAAAGCGTATACGCATCGATAATTATTCACNTATGCTTA---AA---GGTAACATTNAGCTATC---CACAG-CAGGCGATAAAATANTAGGTATA------------AA------------CATGCAATGGAATACACATTTTC-G-TATGTATATAAATTA-TATCGTCTTGTTTGT----GACTTTTATCTAGGANACGGCCATATTTATCAATTGAACAC-------AG-------TTTTACAATGCATGCATATTATCTCATCTAAATNACTGCTGTACTATATAAGGTCATTCTTCTATATTTAATACATGTAAAATTACAAAGTTGCAGAGAAGAGCATGT--A--ATTATATAAAAN-A---AT-CAATATGTT--T----GTCTAGAAAATA---A-T---CA-TT------A-TGTGCTGTCTTTTGAACAAATTGT-TT--T-TTTATTAAA-AA-GNTAAAACTATGTACACGATAGTTAATGGA--AT-GTCNCCGACATATTTAAACGA--------ATT--------GTT-------AGAACAAATGACGAG----------CAANANAC-----------GTCAA-----A---AC--------ACTT------------------TATAATACC-A-AA----CAC-TAATAATGAAA---------TGTTTAAG-GGGAGTTTGTCATATTCTGGAACAAAA--ATATGG---------AACGCCG-----TTCNACTTAAA------A----------------------TTAC------------TTTAAACATATTCACAGATAAATT--CCTGAATTGG-G-TAAAA----TGCGAAAGTAGAATTTAA-ATAAATTG-----TCA------TTAATGA--AA-ATAAC-----AACTA----GCGTTT---------ATTGGT-A----------AT-------------TNT------------T-T-TTTTAGTTTG-TNT----NTTTGTTATTT-TTCAGTT--TGTTTT--CGTTGTATTAT-AACAT-A---ATATTTTGTACATTTATCATGAANACATTT-TA-GTT-ATATGATATAATATGACGTTCTTTGT
Reference ( family-780 )      : NNNNNNNNNNNTGTATAT-C-AGATGATACTACAATTTATGATATTCAATTAGA-TAAGGCAGATCTCGAACGAAATTTACAATGTTTACTAAATTATCTTTTAAACTGGTGTAGAGAGAACGGAANGCNAATAAACAGCGACAAANCAAAGGTCATGTTCATAACAGNGCGAAAGCGTATACGCATCGATAATTATTCACNTATGCTTA---AA---GGTAACATTNAGCTATC---TACAG-CAGGCGATAAAATANTAGGTATA------------AA------------CATGCAATGGAATACACATTTTC-G-TATGTATATAAATTA-TATCGTCTTGTTTGT----GACTTTTATCTAGGANACGGCCATATTTATCAATTGAACAC-------GG-------TTTTACAATGCATGCATATTATCTCATCTAAATNACTGCTGTACTATATAAGGTCATTCTTCTATATTTAATACATGTAAAATTACAAAGTTGCAGAGAAGAGCATGT--A--ATTATATAAAAN-A---AT-CAATATGTT--TG---GTCTAGAAAATA---ATT---CACTT------A-TGTGCTGTCTTTTGAACAAATTGT-TT--T-TTTATTAAA-AA-GNTAAAACTATGTACACGATAGTTAATGGA--AT-GTCNCCGACATATTTAAACGA--------AT---------GTT-------AGAACAAATGACGAG----------CAANANAC-----------GTCAA-----A---AC--------ACTT------------------TATAATACC-A-AA----CAC-TAATAATGAAA---------TGTTTAAG-GGGAGTTTGTCATATTCTGGAACAAAA--ATATGG---------AACGCCG-----TTCNACTTAAA------A----------------------TTAC------------TTTAAACATATTCACAGATAAATT--CCTGAATTGG-G-TAAAA----TGCGAAAGTAGAATTTAA-ATAAATTG-----TCA------TTNATGA--AA-ATAAC-----AACTA----GCGTTT---------ATTGGT------------AT-------------TNT------------T-T-TTTTAGTTTG-TNT----NTTTGTTATTT-TTCAGTT--TGTTTT--CGTTGTATTAT-AACAT-A---ATATTTTGTACATTTATCATGAANACATTT-TA-GTT-ATATGATATAATATGACGTNCTTTGT
gi|1                          :            TGTATGT-T-ATATGATACTAAAATTTATGATTTTCAATTAGA-TAAGGCAGATCGTGAACTAAATTTACAATGTTCGCTAAATTATCTTTTAAACTGGTGTAGAGAGAATGGAATGTTA-TAAACAGTGACAAATCAAAGGTCA---------CAGCGTAAAAGCGTATACACATCAGTAATAATTCACCTAT-----------------ATATTTAGCTATA----ACAG-CAGGTGATAACATAGTCGGTACA------------AA------------CATGCAATGGGATGCACATTTTCTG-TATATATATAAATTA-TACCGTCTTGTTTGT----GACGTTTATCTAGGATACGGTCATATTTATCAATTAAACACTGTTTATAG-------TTTTATAATGCATGCATATTACCTCAGCTAAATTACTGCTGTACTATATGAGGTCATTCATCTATATTTAATACATGTAAAATTATAAACTTGCATAGAAGAGCA-----A--ATTATACAAAAATA---GT-CAATACACTACTGACAGCCTAGAAAATGCACGTTTCCCACTT------A-TGTGCTGCCTTTTGAACAAACTGT-TA--A-TTTATTAAA-AC-GTTCAAACTGTGTACATTATACATGATGAA--AT--TCACCGACAAATATAAACGA--------AT---------G---------AGAACTAATGATGAG----------CAACACAC-----------ATTAA-----A---AC--------CCTT------------------TATAATATC-A-AA----CAC-TAGCAATGAAA---------TATTTAAA-GGGAGTGTGACCTATTCTAGAACAAAA--ATATGG---------AATGCTG-----TTCTACTTGAA------A----------------------TTAC------------TTTAATCGTATTCACAAACAAATT--CCCGAATTAA-G-TAAAA----TGCGAAAATAGCGTTTAA-ATAAAATG-----TCG------TTTACGA--AA-ATATC-----AATTA----GCGTTT---------ATTGGT------------AT-------------TGC------------T-T-TTTTAGTTTG-TGT----ATTTGTTGTTT-TTCAGTA--TGTTTT--CATTGTATTACAAACAT-AATTATATTTTATACATTTATCATTAAAACATTT-TA--TT-ATTTTATGTAATATGACGTTCTTTGT
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ccgtttgaaatAAGTG-----TCA------TTAATGA--AA-ATAAC-----AACAA----GCGCTT---------ATTGGT------------ATATAACTATATATGTAT------------T-TCTTTTAGTTCGTTTT----TTTTGTTAATT-TCCATTT--TGCTTT--AGTTGT-T--T-AACATAA---ATATTTTGTAAACTTATCATGTAAACATTTAAA-GTT-ATATGATATAATgatacgataaacttattttaagagagcctcaatga
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AC-TTATAAGCAAA---------T--TTAAG-GA-AGTTTATCATATTCTGGAGAAAAATAATATGG---------AACTCCA-----TTACACTTAAA------A----------------------TTA--------------------------A-AGAGAAATT--CCTGAATTGG-G-TAAAA----TGCGAAAGTAGAATTTAA-AGAAATTG-----CC----------ATGA--AA-ATAAC-----AAATA----ACATTT---------ATTGtt
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tAT-----------GTCAA-----ACAGAT--------A-TT------------------TATAATACA-A-AA-----ACGTAATAATGAAA---------CGTTTAAT-CGGAGATTGTCATATTCTGGAAC-AAA--ATATGG---------AACGCTA-----TTCGAATTAAA------A----------------------TTA
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     caatacatttgaagtcaATA--CCTGAAATGG-A-CAAAA----TACGAAAGTTGAATTTGA-ATAAATTG---------------TTATGA--AA-AAAAT-----ATCTA----ACGTTT---------ATTGGT------------ATA------------TAC------------TATATTTTAGTTTG--AT----GTTTaaaatatcgtttg
gi|15                         :          aatgTATAT-CCAGAGTATGCTACAATTTATGATATTCAATTAGA-TAAGGCAAATCTCGAACGAAATATACAATGTGTATTAAAt
gi|16                         :                                                                                                                                                                                                                                                                                                                              acagattACATCAAATA-TATCGTCTTGTTTGT----GGCTTTTATATCTGATACGGCCACATTTATCAAATGAACA
gi|2                          :            TGTATATGC-AGATGATACTACACTTTATGATAGTCAATCAGACTAA------TTTCGAACGAAATTGAAAGTGTTTACTAAATTATCTTT-AAACTGATGTAAAGAGAACGGAAAGCAAATAAACAGCAACAAAACAAAAGTCATGTTCATAACAAGGCGAAAACATATAAGCATTGATAATTATTCACGTATGCTTA---AACATAGTAACATTCAGCAATCCTTCACAG-CAGCTGATAAAATAATAGGTATAACTATCGACGACAA------------CATGCAATGA-------ATTTTA-A-TATGTATATAAA--A-AATTGTCTTGTACGT----GACTTGTATCAAGAAGATGGCCATATTTATAAATTGTACAC-------AGCTTATACTTTTATATTGCATACACATTATCTCATCTAAAAAACTGCAGTACAATAT-AGCTCATTCTTTTA-A--TAA-ACATGTAAACT-------CTGCAGAGAAGAGCATGTAGA--GTTATTTAAAAA-A---AT-CAACATG-T--TA---GTCTCCAACATA------------TT------A--------------GAACAAATTGT-T---------TTAAATAA-GAGCAAATGGCGAACACGATA----------------CATCAATACACTTG----------------------------------AGATC-AATGAC-AG----------AAAGAAAC-----------G--------------------------T------------------TATAGTACC-G-AA----AAC-TAAAATTGAAA---------TGTCTAAG-GTGAGTTTCTCATATTATCTAATAAAA--TTATGGAAATAAAAAAATGGCG-----TTT--CTT-----------------------------------T------------TTTAAACATATTCACAAATAAATTAACTT--ATTGG-G-TAAAA----TGCGATAGTAGAACTGAACAGAAATTG-----TCATAATCGTTAATTATTAA-ATGACTTTTGGAATATCACGTATTTCACAACTGAATTGAT------------AT-------------TTCTTTTTAATTTGAT-T-TTTTAGTTTG-TAT----TTTTGTTATTT-TT---TTGGTGTTTT--
gi|3                          :                                                                                                                                                                                     ttttacataATGACTATCCACTTATGCTTACAAAA---GATAACATTGAGGTATCG--TAAAAACAGGCAATAAAGTATTATATATA------------AATGTCGACGACAACATGCACTGGAATACACACCTTCAG-TATGTATATATGTTA-T-----CTTGTTTATAAATGACCTTTATCTAGGACGCGGCCATGTTTATCAATTGAGTAC-------AG-------TTTTACAATAAATACATATCATCTGATCTAAATTATTGCTGTATTATGTAATGTGATTCTCCTATAGTTAATTCATATATAAATACAAAATTAC-------AGCGTAA--A--ATTATGCAAAAC-A---AT-CAATATGTT--T----GTCTA-AAAAGA---AAT---CATTTCTTAAAA-TATGTTGTCTTTTGAACCAGTTG--TA--T-TTTATTAAA-AATGTTACAGC-ATATACACGATAGTTAATGGA--AT-GTCTCTGGCATATTTAAACGG--------ATTAAAATCAAATT-------AAAACAAATGACGAAATAGGTACATCAACAAACTTGGGGTCAATGTCAA-----A---ATTCTGTAAAACTT------------------TATAATACCGA-AA----C-C-TTATTATAAAA---------TGTTTAAG-GGAAGTTTGTCATATTCTGTAGTATAA--ATATGA---------TACGTCAAAACTTTGAAATTAAAAATTCCA----------------------TTTC------------TTTAAACATATTCACAG-TACATT--CCTAAATCGGTGTTTAAA----TATGATAGTAGAATTTAA-ATAAATTG-----CCA------TTAATGA--AA-ATAAC-----AACTA----ACGTTT---------ATTGGTAA----------AT-------------GTT------------TAT-TTTTAGTTTA-TTTTCTGGCTTGTTGCAT-ACTAGTT--TGTTTG--TGTGATATTAT----------------------ATTTATCAAGAA-ACATTC-TA-
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                             aacaaagagacttaaactgaggtataatgaaagtgaGCTGTTCCATTTA-GGTCATTCGTTTATATTTGA-A-AT-TGAAGTTTAAAGGTTGCAGAGAAGAGCAT-T--G---CCATATAAAAT-G---ATACAAAATG------------------ATA---AAT---CTATT------ACTGTACTATCTTTTGAACGAATTGTGTT--T-TCTATTAAA-AA-TGTAAAATTATGTAAAATATAGTAAATGGATTATAGTCGGTAAAATATTTAATTAA--------ATT--------GTTTCATATGAAAACAAAAGACAAG----------CAATATAC-----------TCCAATGCCAA---ACGTAA----ACTT------------------TATAAT--T-A-AAATGACA--TAATA-TAAAAAAAAATTCATGTTTAAG-GGGAATTTGTCTTATGATATAACAAAA---CATGG---------AACGCTA-----TTCAACTTAAA------AACTTGCAAACGTAAAAATGCCGTTTC------------TCTAAACATATTCACAAATAAATT--TCCGAATTAG-T-TTAAA----TGC---AATCTAATTTAA-AGAAATTG-----TCA-------TAATGA--AA-ACAGC-----AACTA----GCTTGT---------ATTGAT------------AA-------------TTT------------T-T-Ttgcaattcgatacactt
gi|5                          :                                                                                                                                                                                                                                                                                         A------------CATGTAATGGAACACACATTTTC-AATATATATATATATAAATATCCTCTTGTTTAT----GGCTTGTATCTAGGAAATGGTATTATTTATCAATT------------------------TCACAATG--TGCATATTGGCTCATCTATATAACTGCCTTGACATGTGGAGACATTCTTCTATAGTGAATTCATGTTAAGTTACAGAATCGCAGAGAAGAGCATGTAAA--ATTATAAAAAAA-AAACAT-CAATATGTT--T----GTTTAGAAAA-A---AC-------------------TGCTGTA-TTTGAACAAACCGT-TTGCT-TTTATCAAA-AG-GACAAAAATATGCACACAATAGTAAGT-GA--GT-GTCCCCGATACGTTTAAACGAAACGCATCAT---------GTT-------AGAACGATTGACGAG----------CAAGCTAC-----------ACCAa
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           tgataaaatatcggccaaaatatcgacgacgTT------------------TATAATACC-ACAA----C-C-TAATA---------------TGTTTAAATGGGAGTTTGTTATATTCTGGAATATAA--ATATA----------AAT---------TTCCACTTGAA------A----------------------TTACAAATTACATTTCTTTAGATTTATTCACAGATAAATT--CCTAAATAAG-G-T-AAA----T-------TAG----TAA-ATAAATGT-----TTA------TGAATGA--AA-ATAAC-----AACTA----GCGTTT---------ATTGGTAAATATATAATAAC-------------TAT------------T-C-TTTTAGTTTG-TTG----CTTTGTTATTT-TTCAACT--GGTTTT---GTTGTATT----ACAT-AT--TTATTTTGTACATTTATTACGAATACAATT-TACGTT-ATATGATATAttacgctcgaggtcaat
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GTACTATATAGGGTCATTCTTCTATATTTAATACATGTAAAATTACAAAGATGCAGAGAAGAGCATGT--AGCATTATATAAAAG-----AC-CAATATGTT--T----GTCTAG---ATA---A-----CA--T------A------TGTCATATGAACAAATTGT-TT--TATTTA--AAA-AA-TTTAAAACTTTGTACAAAATAGTTTATGGA--AT-GTCCCTTTCATATTTAAACGA--------ATTGTTTCAA-ATT-------AGTACAAATGGTGAG----------CAAAATAC-----------ATTAA-----A---AC--------ACTTGAGGTCAAACATAAACTCTATAATTCCGG-AA----CA--TAATAATGAct
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    C------------TTTTAACATGTTCACAAATAAATT--TATAAATAGA-G-TAAAATGACTGCGAAAGTAG----------AAATTG-----TC----------ATGA--AACACAAC-----CGCTT----ACGTAT---------ATTGca
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tCGAAAGTAGAATTTTA-ATATATTGCTATTTAA------TTAATAA--AA-ATAAC-----AACTA----GCGTTT---------GTTGGTGAGA--------AT-------------TTT------------C-T-TTTTGATTTG----------TTGTTATTTGTTTA-TT--TTTTTTGACAATGCATTAT--ACAC-----ACATTTTGTATATTTATCATGAATACACTT-TA-TTTAATATGATTTAtcaaatgaatttttggagggccacagattgtataattgttaggacgatattccttttctgtattgttttatgtgtttgtttgttgtttttcagattgtttttgttatattacacattttgt

Unaligned ( gi|14 ): TATCAGGATATTGTATTGATGCAAATAACGAGCACTACGTATCAATACACTTGAGGTCAACGACAAACAGCAACTATATAATACAGTATCCTGATAACGAAATG

lowQualScore                  :                                                                                                                                                                                                                                                                             11111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
lowQualScore                  :                   222                                 1                                               1                          11                        333333333                                         555555555555555              5555555                           00000000000000000000000000                       222                               1111                                         5555555555555555                                                                                                          22222222           11111            99999999999999999999999999999999999999999999999                     22222                                           111111                    88888888888888888888888888888888888               2222222222        000000000000000000000000000000000000000000000000000000000         111  22222222           222222222                                            222222222222222222222           888888888888888888888888888888888888888888888                                                                           11111  1111111111              11111               111111111     55555555555555555555555555555555555555555555555      2222222222      222222222       22222222222                    111       555555555555555                                11  1                          
lowQualScore                  :                   222                                 3   6   3                                       5                       1  66               1        888888888    1             2                  1   444444444444444       1      5555555        0         1        11111111111111111111111111          7 11         888          1 77 8 0             7777     0         1                   44    8888888888888888          8          0           1          0  0 88               7    7    1        1   3                77777777     77    44444  6         55555555555555555555555555555555555555555555555    7              6 33333         6  6 1      33      44   7777  2  000000  1      0          55555555555555555555555555555555555     6      1  9999999999   1 1  222222222222222222222222222222222222222222222222222222222      1  222  33333333     6 0   222222222        5                   0  0    999     333333333333333333333   6    2  111111111111111111111111111111111111111111111       0                66   2      555 3    99999   2       0    4 1      00000  8888888888    55  4     00000     8888      666666666     88888888888888888888888888888888888888888888888 4    1111111111      111111111       77777777777   5  1 6 8888      666     0 000000000000000         3            8      8  66  0       1                  
lowQualScore                  :                   ...                                 .   .   .                                       .                       .  ..               .        .........    .             .                  .   ...............       .      .......        .         .        ..........................          . ..         ...          . .. . .             ....     .         .                   ..    ................          .          .           .          .  . ..               .    .    .        .   .                ........     ..    .....  .         ...............................................    .              . .....         .  . .      ..      ..   ....  .  ......  .      .          ...................................     .      .  ..........   . .  .........................................................      .  ...  ........     . .   .........        .                   .  .    ...     .....................   .    .  .............................................       .                ..   .      ... .    .....   .       .    . .      .....  ..........    ..  .     .....     ....      .........     ............................................... .    ..........      .........       ...........   .  . . ....      ...     . ...............         .            .      .  ..  .       .                  
lowQualScore                  :                   000                                 3   7   7                                       5                       0  55               0        555555555    0             5                  0   000000000000000       0      0000000        7         0        66666666666666666666666666          0 55         000          4 00 0 8             0000     6         0                   22    2222222222222222          8          8           0          3  3 33               2    3    0        0   7                22222222     00    33333  7         77777777777777777777777777777777777777777777777    5              7 00000         7  7 0      55      77   3333  5  888888  0      3          55555555555555555555555555555555555     0      0  2222222222   0 0  777777777777777777777777777777777777777777777777777777777      7  444  66666666     5 2   999999999        7                   7  4    666     000000000000000000000   6    3  000000000000000000000000000000000000000000000       3                99   2      111 6    77777   1       8    4 7      00000  4444444444    55  0     00000     5555      000000000     00000000000000000000000000000000000000000000000 4    9999999999      444444444       11111111111   7  7 6 3333      111     8 666666666666666         2            8      0  88  0       2                  
consensus                     : NNNNNNNNNNNTGTATAT-C-AGATGATACTACAATTTATGATATTCAATTAGA-TAAGGCAGATCTCGAACGAAATTTACAATGTTTACTAAATTATCTTTTAAACTGGTGTAGAGAGAACGGAANGCNAATAAACAGCGACAAANCAAAGGTCATGTTCATAACAGNGCGAAAGCGTATACGCATCGATAATTATTCACNTATGCTTA---AA---GGTAACATTNAGCTATC---N--ACAGCAGGCGATAAAATANTAGGTATA------------AA------------CATGCAATGGAATACACATTTTC-G-TATGTATATAAATTA-TATCGTCTTGTTTGT----GACTTTTATCTAGGANACGGCCATATTTATCAATTGAACAC-------AG-------TTTTACAATGCATGCATATTATCTCATCTAAATNACTGCTGTACTATATAAGGTCATTCTTCTATATTTAATACATGTAAAATTACAAAGTTGCAGAGAAGAGCATGT--A--ATTATAT-AAAANA---AT-CAATATGTT--T----GTCTAGAAAATA-A------CCA-TT-------A-TGTGCTGTCTTTTGAACAAATTGT-TT--T-TTTATTAAA-AA-GNTAAAACTATGTACACGATAGTTAATGGA--AT-GTCNCCGACATATTTAAACGA-----AT--T--------G-------TT-------AGAACAAATGACGAG----------CAANANAC-----------GTCAA-----A---AC--------ACTT------------------TATAATACC-A-AA----CAC-TAATAATGAAA---------TGTTTAAG-GGGAGTTTGTCATATTCTGGAACAAAA--ATATGG---------AACGCCG-----TTCNACTTAAA------A----------------------TTAC------------TTTAAACATATTCACAGATAAATT--CCTGAATTGG-G-TAAAATG----CGAAAGTAGAATTTAA-ATAAATTG-----TCA------TTAATGA--AA-ATAAC-----AACTA----GCGTTT---------ATTGG-----------T---A-AT-----------TNT-----------T--T-TTTT----------AGTTTG-TNT----NTTTGTTA-----------TTT-TTCAGT-T--TGTTTT--CGTTGTATTAT-AACAT-A---ATATTTTGTACATTTATCATGAANACATTT-TA-GTT-ATATGATATAATATGACGTTCTTTGT
Reference ( family-780 )      : NNNNNNNNNNNTGTATAT-C-AGATGATACTACAATTTATGATATTCAATTAGA-TAAGGCAGATCTCGAACGAAATTTACAATGTTTACTAAATTATCTTTTAAACTGGTGTAGAGAGAACGGAANGCNAATAAACAGCGACAAANCAAAGGTCATGTTCATAACAGNGCGAAAGCGTATACGCATCGATAATTATTCACNTATGCTTA---AA---GGTAACATTNAGCTATC---C--ACAGCAGGCGATAAAATANTAGGTATA------------AA------------CATGCAATGGAATACACATTTTC-G-TATGTATATAAATTA-TATCGTCTTGTTTGT----GACTTTTATCTAGGANACGGCCATATTTATCAATTGAACAC-------AG-------TTTTACAATGCATGCATATTATCTCATCTAAATNACTGCTGTACTATATAAGGTCATTCTTCTATATTTAATACATGTAAAATTACAAAGTTGCAGAGAAGAGCATGT--A--ATTATAT-AAAANA---AT-CAATATGTT--T----GTCTAGAAAATA-A------TCA-TT-------A-TGTGCTGTCTTTTGAACAAATTGT-TT--T-TTTATTAAA-AA-GNTAAAACTATGTACACGATAGTTAATGGA--AT-GTCNCCGACATATTTAAACGA-----AT--T--------G-------TT-------AGAACAAATGACGAG----------CAANANAC-----------GTCAA-----A---AC--------ACTT------------------TATAATACC-A-AA----CAC-TAATAATGAAA---------TGTTTAAG-GGGAGTTTGTCATATTCTGGAACAAAA--ATATGG---------AACGCCG-----TTCNACTTAAA------A----------------------TTAC------------TTTAAACATATTCACAGATAAATT--CCTGAATTGG-G-TAAAATG----CGAAAGTAGAATTTAA-ATAAATTG-----TCA------TTAATGA--AA-ATAAC-----AACTA----GCGTTT---------ATTGG-----------T---A-AT-----------TNT-----------T--T-TTTT----------AGTTTG-TNT----NTTTGTTA-----------TTT-TTCAGT-T--TGTTTT--CGTTGTATTAT-AACAT-A---ATATTTTGTACATTTATCATGAANACATTT-TA-GTT-ATATGATATAATATGACGTTCTTTGT
gi|1                          :            TGTATGT-T-ATATGATACTAAAATTTATGATTTTCAATTAGA-TAAGGCAGATCGTGAACTAAATTTACAATGTTCGCTAAATTATCTTTTAAACTGGTGTAGAGAGAATGGAATGTT-ATAAACAGTGACAAATCAAAGGTC---------ACAGCGTAAAAGCGTATACACATCAGTAATAATTCACCTAT-----------------ATATTTAGCTAT----A--ACAGCAGGTGATAACATAGTCGGTACA------------AA------------CATGCAATGGGATGCACATTTTCTG-TATATATATAAATTA-TACCGTCTTGTTTGT----GACGTTTATCTAGGATACGGTCATATTTATCAATTAAACACTGTTTATAG-------TTTTATAATGCATGCATATTACCTCAGCTAAATTACTGCTGTACTATATGAGGTCATTCATCTATATTTAATACATGTAAAATTATAAACTTGCATAGAAGAGCA-----A--ATTATACAAAAATA---GT-CAATACACTACTGACAGCCTAGAAAATGCACGTTTCCCACTT-------A-TGTGCTGCCTTTTGAACAAACTGT-TA--A-TTTATTAAA-AC-GTTCAAACTGTGTACATTATACATGATGAA--AT--TCACCGACAAATATAAACGA-----A---T--------G----------------AGAACTAATGATGAG----------CAACACAC-----------ATTAA-----A---AC--------CCTT------------------TATAATATC-A-AA----CAC-TAGCAATGAAA---------TATTTAAA-GGGAGTGTGACCTATTCTAGAACAAAA--ATATGG---------AATGCTG-----TTCTACTTGAA------A----------------------TTAC------------TTTAATCGTATTCACAAACAAATT--CCCGAATTAA-G-TAAAATG----CGAAAATAGCGTTTAA-ATAAAATG-----TCG------TTTACGA--AA-ATATC-----AATTA----GCGTTT---------ATTGG-----------T-----AT-----------TGC-----------T--T-TTTT----------AGTTTG-TGT----ATTTGTTG-----------TTT-TTCAGT-A--TGTTTT--CATTGTATTACAAACAT-AATTATATTTTATACATTTATCATTAAAACATTT-TA--TT-ATTTTATGTAATATGACGTTCTTTGT
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ccgtttgaaatAAGTG-----TCA------TTAATGA--AA-ATAAC-----AACAA----GCGCTT---------ATTGG-----------T---ATATAACTATATATGTAT-----------T--TCTTTT----------AGTTCGTTTT----TTTTGTTA-----------ATT-TCCATT-T--TGCTTT--AGTTGT-T--T-AACATAA---ATATTTTGTAAACTTATCATGTAAACATTTAAA-GTT-ATATGATATAATgatacgataaacttattttaagagagcctcaatga
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AC-TTATAAGCAAA---------T--TTAAG-GA-AGTTTATCATATTCTGGAGAAAAATAATATGG---------AACTCCA-----TTACACTTAAA------A----------------------TTA--------------------------A-AGAGAAATT--CCTGAATTGG-G-TAAAATG----CGAAAGTAGAATTTAA-AGAAATTG-----CC----------ATGA--AA-ATAAC-----AAATA----ACATTT---------ATTGtt
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          tAT-----------GTCAA-----ACAGAT--------A-TT------------------TATAATACA-A-AA-----ACGTAATAATGAAA---------CGTTTAAT-CGGAGATTGTCATATTCTGGAAC-AAA--ATATGG---------AACGCTA-----TTCGAATTAAA------A----------------------TTA
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             caatacatttgaagtcaATA--CCTGAAATGG-A-CAAAATA----CGAAAGTTGAATTTGA-ATAAATTG-----TT----------ATGA--AA-AAAAT-----ATCTA----ACGTTT---------ATTGG-----------T---ATAT-----------ACTA----------T--A-TTTT----------AGTTTG--AT----GTTTaaaatatcgtttg
gi|15                         :          aatgTATAT-CCAGAGTATGCTACAATTTATGATATTCAATTAGA-TAAGGCAAATCTCGAACGAAATATACAATGTGTATTAAAt
gi|16                         :                                                                                                                                                                                                                                                                                                                               acagattACATCAAATA-TATCGTCTTGTTTGT----GGCTTTTATATCTGATACGGCCACATTTATCAAATGAACA
gi|2                          :            TGTATATGC-AGATGATACTACACTTTATGATAGTCAATCAGACTAA------TTTCGAACGAAATTGAAAGTGTTTACTAAATTATCTTT-AAACTGATGTAAAGAGAACGGAAAGCAAATAAACAGCAACAAAACAAAAGTCATGTTCATAACAAGGCGAAAACATATAAGCATTGATAATTATTCACGTATGCTTA---AACATAGTAACATTCAGCAATCCTTC--ACAGCAGCTGATAAAATAATAGGTATAACTATCGACGACAA------------CATGCAATGA-------ATTTTA-A-TATGTATATAAA--A-AATTGTCTTGTACGT----GACTTGTATCAAGAAGATGGCCATATTTATAAATTGTACAC-------AGCTTATACTTTTATATTGCATACACATTATCTCATCTAAAAAACTGCAGTACAATAT-AGCTCATTCTTTTA-A--TAA-ACATGTAAACT-------CTGCAGAGAAGAGCATGTAGA--GTTATTT-AAAAAA---AT-CAACATGTT--A----GTCTCCAACAT-----------A-TT-------A--------------GAACAAATTGT-T---------TTAAATAA-GAGCAAATGGCGAACACGATA----------------CATCAATACACTTG----------------------------------------AGATC-AATGAC-AG----------AAAGAAAC-----------G--------------------------T------------------TATAGTACC-G-AA----AAC-TAAAATTGAAA---------TGTCTAAG-GTGAGTTTCTCATATTATCTAATAAAA--TTATGGAAATAAAAAAATGGCG-----TTT--CTT-----------------------------------T------------TTTAAACATATTCACAAATAAATTAACTT--ATTGG-G-TAAAATG----CGATAGTAGAACTGAACAGAAATTG-----TCATAATCGTTAATTATTAA-ATGACTTTTGGAATATCACGTATTTCACAACTGAATTGA-----------T---A-TT-----------TCTTTTTAATTTGAT--T-TTTT----------AGTTTG-TAT----TTTTGTTA-----------TTT-TT---T-TGGTGTTTT--
gi|3                          :                                                                                                                                                                                     ttttacataATGACTATCCACTTATGCTTACAAAA---GATAACATTGAGGTATC---GTAAAAACAGGCAATAAAGTATTATATATA------------AATGTCGACGACAACATGCACTGGAATACACACCTTCAG-TATGTATATATGTTA-T-----CTTGTTTATAAATGACCTTTATCTAGGACGCGGCCATGTTTATCAATTGAGTAC-------AG-------TTTTACAATAAATACATATCATCTGATCTAAATTATTGCTGTATTATGTAATGTGATTCTCCTATAGTTAATTCATATATAAATACAAAATTAC-------AGCGTAA--A--ATTATGC-AAAACA---AT-CAATATGTT--T----GTCTAAAAAGAA-A------TCA-TTTCTTAAAA-TATGTTGTCTTTTGAACCAGTTG--TA--T-TTTATTAAA-AATGTTACAGC-ATATACACGATAGTTAATGGA--AT-GTCTCTGGCATATTTAAACGG-----AT--TAAAATCAAA-------TT-------AAAACAAATGACGAAATAGGTACATCAACAAACTTGGGGTCAATGTCAA-----A---ATTCTGTAAAACTT------------------TATAATACCGA-AA----C-C-TTATTATAAAA---------TGTTTAAG-GGAAGTTTGTCATATTCTGTAGTATAA--ATATGA---------TACGTCAAAACTTTGAAATTAAAAATTCCA----------------------TTTC------------TTTAAACATATTCACAG-TACATT--CCTAAATCGGTGTTTAAATA----TGATAGTAGAATTTAA-ATAAATTG-----CCA------TTAATGA--AA-ATAAC-----AACTA----ACGTTT---------ATTGG-----------T---A-AA-----------TGT-----------TTAT-TTTT----------AGTTTA-TTTTCTGGCTTGTTG-----------CAT-ACTAGT-T--TGTTTG--TGTGATATTAT----------------------ATTTATCAAGAA-ACATTC-TA-
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                              aacaaagagacttaaactgaggtataatgaaagtgaGCTGTTCCATTTA-GGTCATTCGTTTATATTTGA-A-AT-TGAAGTTTAAAGGTTGCAGAGAAGAGCAT-T--G---CCATAT-AAAATG---ATACAAAATGAT--------------AAAT---------CTA-TT-------ACTGTACTATCTTTTGAACGAATTGTGTT--T-TCTATTAAA-AA-TGTAAAATTATGTAAAATATAGTAAATGGATTATAGTCGGTAAAATATTTAATTAA-----AT--T--------G-------TTTCATATGAAAACAAAAGACAAG----------CAATATAC-----------TCCAATGCCAA---ACGTAA----ACTT------------------TATAAT--T-A-AAATGACA--TAATA-TAAAAAAAAATTCATGTTTAAG-GGGAATTTGTCTTATGATATAACAAAA---CATGG---------AACGCTA-----TTCAACTTAAA------AACTTGCAAACGTAAAAATGCCGTTTC------------TCTAAACATATTCACAAATAAATT--TCCGAATTAG-T-TTAAATG----C---AATCTAATTTAA-AGAAATTG-----TCA-------TAATGA--AA-ACAGC-----AACTA----GCTTGT---------ATTGA-----------T---A-AT-----------TTT-----------T--T-tgcaattcgatacactt
gi|5                          :                                                                                                                                                                                                                                                                                          A------------CATGTAATGGAACACACATTTTC-AATATATATATATATAAATATCCTCTTGTTTAT----GGCTTGTATCTAGGAAATGGTATTATTTATCAATT------------------------TCACAATG--TGCATATTGGCTCATCTATATAACTGCCTTGACATGTGGAGACATTCTTCTATAGTGAATTCATGTTAAGTTACAGAATCGCAGAGAAGAGCATGTAAA--ATTATAA-AAAAAAAACAT-CAATATGTT--T----GTTTAGAAAA-A-A------C----------------TGCTGTA-TTTGAACAAACCGT-TTGCT-TTTATCAAA-AG-GACAAAAATATGCACACAATAGTAAGT-GA--GT-GTCCCCGATACGTTTAAACGAAACGCATCAT--------G-------TT-------AGAACGATTGACGAG----------CAAGCTAC-----------ACCAa
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   tgataaaatatcggccaaaatatcgacgacgTT------------------TATAATACC-ACAA----C-C-TAATA---------------TGTTTAAATGGGAGTTTGTTATATTCTGGAATATAA--ATATA----------AAT---------TTCCACTTGAA------A----------------------TTACAAATTACATTTCTTTAGATTTATTCACAGATAAATT--CCTAAATAAG-G-T-AAAT-----------TAG----TAA-ATAAATGT-----TTA------TGAATGA--AA-ATAAC-----AACTA----GCGTTT---------ATTGGTAAATATATAAT---A-AC-----------TAT-----------T--C-TTTT----------AGTTTG-TTG----CTTTGTTA-----------TTT-TTCAAC-T--GGTTTT---GTTGTATT----ACAT-AT--TTATTTTGTACATTTATTACGAATACAATT-TACGTT-ATATGATATAttacgctcgaggtcaat
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GTACTATATAGGGTCATTCTTCTATATTTAATACATGTAAAATTACAAAGATGCAGAGAAGAGCATGT--AGCATTATAT-AAAAG----AC-CAATATGTT--T----GTCTAG---ATA-A-------CA--T-------A------TGTCATATGAACAAATTGT-TT--TATTTA--AAA-AA-TTTAAAACTTTGTACAAAATAGTTTATGGA--AT-GTCCCTTTCATATTTAAACGA-----AT--T--------GTTTCAAATT-------AGTACAAATGGTGAG----------CAAAATAC-----------ATTAA-----A---AC--------ACTTGAGGTCAAACATAAACTCTATAATTCCGG-AA----CA--TAATAATGAct
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            C------------TTTTAACATGTTCACAAATAAATT--TATAAATAGA-G-TAAAATGACTGCGAAAGTAGAA----------ATTG-----TCA------T----GA--AACACAAC-----CGCTT----ACGTAT---------ATTGT-----------C---A-AA-----------TGA-----------A--T-TTTTGGAGGGCCACAGATTG-TAT----AATTGTTAGGACGATATTCCTT-TTCTGTAT--TGTTTT--ca
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      t----CGAAAGTAGAATTTTA-ATATATTGCTATTTAA------TTAATAA--AA-ATAAC-----AACTA----GCGTTT---------GTTGG-----------TGAGA-AT-----------TTT-----------C--T-TTTT----------GATTTG----------TTGTTA-----------TTTGTTTA-T-T--TTTTTTGACAATGCATTAT--ACAC-----ACATTTTGTATATTTATCATGAATACACTT-TA-TTTAATATGATTTAatgtgtttgtttgttgtttttcagattgtttttgttatattacacattttgt

Unaligned ( gi|14 ): TATCAGGATATTGTATTGATGCAAATAACGAGCACTACGTATCAATACACTTGAGGTCAACGACAAACAGCAACTATATAATACAGTATCCTGATAACGAAATG

lowQualScore                  :                                                                                                                                                                                                                                                                             11111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
lowQualScore                  :                   222                                 1                                               1                            1                        333333333                                        555555555555555              4444444                           00000000000000000000000000                       222                               1111                                         5555555555555555                                                                                                          22222222          222222            88888888888888888888888888888888888888888888888                     22222                                           111111                    88888888888888888888888888888888888               2222222222        000000000000000000000000000000000000000000000000000000000         111  22222222           222222222                                            222222222222222222222           888888888888888888888888888888888888888888888                                            1111                           11111  2222222222              11111               111111111      6666666666666666666666666666666666666666666666      2222222222      222222222       22222222222                    111       555555555555555                                11  1                          
lowQualScore                  :                   222                                 3   6   3                                       5                       1  1 5              1         888888888   1             2                  1   444444444444444       1      9999999        0         1        11111111111111111111111111          7 11         888          1 77 8 0             7777     0         1                   44    8888888888888888          8          0           1          0  0 88               7    7    1        1   3                77777777     0    111111  6         88888888888888888888888888888888888888888888888    7              6 33333         6  6 1      33      44   7777  2  000000  1      0          55555555555555555555555555555555555     6      1  9999999999   1 1  222222222222222222222222222222222222222222222222222222222      1  222  33333333     6 0   222222222        5                   0  0    999     333333333333333333333   6    2  111111111111111111111111111111111111111111111       0                66   2      555     0000 0   2     4      4 1      00000  3333333333    55  4     00000     8888      666666666      5555555555555555555555555555555555555555555555 4    1111111111      111111111       77777777777   5  1 6 8888      666     0 000000000000000         3            8      8  66  0       1                  
lowQualScore                  :                   ...                                 .   .   .                                       .                       .  . .              .         .........   .             .                  .   ...............       .      .......        .         .        ..........................          . ..         ...          . .. . .             ....     .         .                   ..    ................          .          .           .          .  . ..               .    .    .        .   .                ........     .    ......  .         ...............................................    .              . .....         .  . .      ..      ..   ....  .  ......  .      .          ...................................     .      .  ..........   . .  .........................................................      .  ...  ........     . .   .........        .                   .  .    ...     .....................   .    .  .............................................       .                ..   .      ...     .... .   .     .      . .      .....  ..........    ..  .     .....     ....      .........      .............................................. .    ..........      .........       ...........   .  . . ....      ...     . ...............         .            .      .  ..  .       .                  
lowQualScore                  :                   000                                 3   7   7                                       5                       0  0 5              0         555555555   0             5                  0   000000000000000       0      3333333        7         0        66666666666666666666666666          0 55         000          4 00 0 8             0000     6         0                   22    2222222222222222          8          8           0          3  3 33               2    3    0        0   7                22222222     3    000000  7         55555555555555555555555555555555555555555555555    5              7 00000         7  7 0      55      77   3333  5  888888  0      3          55555555555555555555555555555555555     0      0  2222222222   0 0  777777777777777777777777777777777777777777777777777777777      7  444  66666666     5 2   999999999        7                   7  4    666     000000000000000000000   6    3  000000000000000000000000000000000000000000000       3                99   2      111     6666 2   1     6      4 7      00000  2222222222    55  0     00000     5555      000000000      3333333333333333333333333333333333333333333333 4    9999999999      444444444       11111111111   7  7 6 3333      111     8 666666666666666         2            8      0  88  0       2                  
consensus                     : NNNNNNNNNNNTGTATAT-C-AGATGATACTACAATTTATGATATTCAATTAGA-TAAGGCAGATCTCGAACGAAATTTACAATGTTTACTAAATTATCTTTTAAACTGGTGTAGAGAGAACGGAANGCNAATAAACAGCGACAAANCAAAGGTCATGTTCATAACAGNGCGAAAGCGTATACGCATCGATAATTATTCACNTATGCTTA---AA---GGTAACATTNAGCTATC---N--ACAGCAGGCGATAAAATANTAGGTATA------------AA------------CATGCAATGGAATACACATTTTC-G-TATGTATATAAATTA-TATCGTCTTGTTTGT----GACTTTTATCTAGGANACGGCCATATTTATCAATTGAACAC-------AG-------TTTTACAATGCATGCATATTATCTCATCTAAATNACTGCTGTACTATATAAGGTCATTCTTCTATATTTAATACATGTAAAATTACAAAGTTGCAGAGAAGAGCATGT--A--ATTATATAAAAN-A---AT-CAATATGTT--TG----TCTAGAAAATA-AC------CA-TT-------A-TGTGCTGTCTTTTGAACAAATTGT-TT--T-TTTATTAAA-AA-GNTAAAACTATGTACACGATAGTTAATGGA--AT-GTCNCCGACATATTTAAACGA-----AT--T--------G-------TT-------AGAACAAATGACGAG----------CAANANAC-----------GTCAA-----A---AC--------ACTT------------------TATAATACC-A-AA----CAC-TAATAATGAAA---------TGTTTAAG-GGGAGTTTGTCATATTCTGGAACAAAA--ATATGG---------AACGCCG-----TTCNACTTAAA------A----------------------TTAC------------TTTAAACATATTCACAGATAAATT--CCTGAATTGG-G-TAAAA----TGCGAAAGTAGAATTTAA-ATAAATTG-----TCA------TTAATGA--AA-ATAAC-----AACTA----GCGTTT---------ATTGGT---A-A-----------T-----------TNT-----------T--T-TTTT----------AGTTTG-TNT----NTTTGTTA-----------TTT-TTCAGT-T--TGTTTT--CGTTGTATTAT-AACAT-A---ATATTTTGTACATTTATCATGAANACATTT-TA-GTT-ATATGATATAATATGACGTTCTTTGT
Reference ( family-780 )      : NNNNNNNNNNNTGTATAT-C-AGATGATACTACAATTTATGATATTCAATTAGA-TAAGGCAGATCTCGAACGAAATTTACAATGTTTACTAAATTATCTTTTAAACTGGTGTAGAGAGAACGGAANGCNAATAAACAGCGACAAANCAAAGGTCATGTTCATAACAGNGCGAAAGCGTATACGCATCGATAATTATTCACNTATGCTTA---AA---GGTAACATTNAGCTATC---N--ACAGCAGGCGATAAAATANTAGGTATA------------AA------------CATGCAATGGAATACACATTTTC-G-TATGTATATAAATTA-TATCGTCTTGTTTGT----GACTTTTATCTAGGANACGGCCATATTTATCAATTGAACAC-------AG-------TTTTACAATGCATGCATATTATCTCATCTAAATNACTGCTGTACTATATAAGGTCATTCTTCTATATTTAATACATGTAAAATTACAAAGTTGCAGAGAAGAGCATGT--A--ATTATATAAAAN-A---AT-CAATATGTT--TG----TCTAGAAAATA-AC------CA-TT-------A-TGTGCTGTCTTTTGAACAAATTGT-TT--T-TTTATTAAA-AA-GNTAAAACTATGTACACGATAGTTAATGGA--AT-GTCNCCGACATATTTAAACGA-----AT--T--------G-------TT-------AGAACAAATGACGAG----------CAANANAC-----------GTCAA-----A---AC--------ACTT------------------TATAATACC-A-AA----CAC-TAATAATGAAA---------TGTTTAAG-GGGAGTTTGTCATATTCTGGAACAAAA--ATATGG---------AACGCCG-----TTCNACTTAAA------A----------------------TTAC------------TTTAAACATATTCACAGATAAATT--CCTGAATTGG-G-TAAAA----TGCGAAAGTAGAATTTAA-ATAAATTG-----TCA------TTAATGA--AA-ATAAC-----AACTA----GCGTTT---------ATTGGT---A-A-----------T-----------TNT-----------T--T-TTTT----------AGTTTG-TNT----NTTTGTTA-----------TTT-TTCAGT-T--TGTTTT--CGTTGTATTAT-AACAT-A---ATATTTTGTACATTTATCATGAANACATTT-TA-GTT-ATATGATATAATATGACGTTCTTTGT
gi|1                          :            TGTATGT-T-ATATGATACTAAAATTTATGATTTTCAATTAGA-TAAGGCAGATCGTGAACTAAATTTACAATGTTCGCTAAATTATCTTTTAAACTGGTGTAGAGAGAATGGAATGTTA-TAAACAGTGACAAATCAAAGGTCA---------CAGCGTAAAAGCGTATACACATCAGTAATAATTCACCTAT-----------------ATATTTAGCTAT----A--ACAGCAGGTGATAACATAGTCGGTACA------------AA------------CATGCAATGGGATGCACATTTTCTG-TATATATATAAATTA-TACCGTCTTGTTTGT----GACGTTTATCTAGGATACGGTCATATTTATCAATTAAACACTGTTTATAG-------TTTTATAATGCATGCATATTACCTCAGCTAAATTACTGCTGTACTATATGAGGTCATTCATCTATATTTAATACATGTAAAATTATAAACTTGCATAGAAGAGCA-----A--ATTATACAAAAATA---GT-CAATACACTACTGACAGCCTAGAAAATGCACGTTTCCCACTT-------A-TGTGCTGCCTTTTGAACAAACTGT-TA--A-TTTATTAAA-AC-GTTCAAACTGTGTACATTATACATGATGAA--AT--TCACCGACAAATATAAACGA-----AT-----------G----------------AGAACTAATGATGAG----------CAACACAC-----------ATTAA-----A---AC--------CCTT------------------TATAATATC-A-AA----CAC-TAGCAATGAAA---------TATTTAAA-GGGAGTGTGACCTATTCTAGAACAAAA--ATATGG---------AATGCTG-----TTCTACTTGAA------A----------------------TTAC------------TTTAATCGTATTCACAAACAAATT--CCCGAATTAA-G-TAAAA----TGCGAAAATAGCGTTTAA-ATAAAATG-----TCG------TTTACGA--AA-ATATC-----AATTA----GCGTTT---------ATTGGT-----A-----------T-----------TGC-----------T--T-TTTT----------AGTTTG-TGT----ATTTGTTG-----------TTT-TTCAGT-A--TGTTTT--CATTGTATTACAAACAT-AATTATATTTTATACATTTATCATTAAAACATTT-TA--TT-ATTTTATGTAATATGACGTTCTTTGT
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ccgtttgaaatAAGTG-----TCA------TTAATGA--AA-ATAAC-----AACAA----GCGCTT---------ATTGGT---ATA-----------TAACTATATATGTAT-----------T--TCTTTT----------AGTTCGTTTT----TTTTGTTA-----------ATT-TCCATT-T--TGCTTT--AGTTGT-T--T-AACATAA---ATATTTTGTAAACTTATCATGTAAACATTTAAA-GTT-ATATGATATAATgatacgataaacttattttaagagagcctcaatga
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AC-TTATAAGCAAA---------T--TTAAG-GA-AGTTTATCATATTCTGGAGAAAAATAATATGG---------AACTCCA-----TTACACTTAAA------A----------------------TTA--------------------------A-AGAGAAATT--CCTGAATTGG-G-TAAAA----TGCGAAAGTAGAATTTAA-AGAAATTG-----CC----------ATGA--AA-ATAAC-----AAATA----ACATTT---------ATTGtt
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          tAT-----------GTCAA-----ACAGAT--------A-TT------------------TATAATACA-A-AA-----ACGTAATAATGAAA---------CGTTTAAT-CGGAGATTGTCATATTCTGGAAC-AAA--ATATGG---------AACGCTA-----TTCGAATTAAA------A----------------------TTA
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             caatacatttgaagtcaATA--CCTGAAATGG-A-CAAAA----TACGAAAGTTGAATTTGA-ATAAATTG-----TT----------ATGA--AA-AAAAT-----ATCTA----ACGTTT---------ATTGGT---ATA-----------T-----------ACTA----------T--A-TTTT----------AGTTTG--AT----GTTTaaaatatcgtttg
gi|15                         :          aatgTATAT-CCAGAGTATGCTACAATTTATGATATTCAATTAGA-TAAGGCAAATCTCGAACGAAATATACAATGTGTATTAAAt
gi|16                         :                                                                                                                                                                                                                                                                                                                               acagattACATCAAATA-TATCGTCTTGTTTGT----GGCTTTTATATCTGATACGGCCACATTTATCAAATGAACA
gi|2                          :            TGTATATGC-AGATGATACTACACTTTATGATAGTCAATCAGACTAA------TTTCGAACGAAATTGAAAGTGTTTACTAAATTATCTTT-AAACTGATGTAAAGAGAACGGAAAGCAAATAAACAGCAACAAAACAAAAGTCATGTTCATAACAAGGCGAAAACATATAAGCATTGATAATTATTCACGTATGCTTA---AACATAGTAACATTCAGCAATCCTTC--ACAGCAGCTGATAAAATAATAGGTATAACTATCGACGACAA------------CATGCAATGA-------ATTTTA-A-TATGTATATAAA--A-AATTGTCTTGTACGT----GACTTGTATCAAGAAGATGGCCATATTTATAAATTGTACAC-------AGCTTATACTTTTATATTGCATACACATTATCTCATCTAAAAAACTGCAGTACAATAT-AGCTCATTCTTTTA-A--TAA-ACATGTAAACT-------CTGCAGAGAAGAGCATGTAGA--GTTATTTAAAAA-A---AT-CAACATGTT--AG----TCTCCAACAT-----------A-TT-------A--------------GAACAAATTGT-T---------TTAAATAA-GAGCAAATGGCGAACACGATA----------------CATCAATACACTTG----------------------------------------AGATC-AATGAC-AG----------AAAGAAAC-----------G--------------------------T------------------TATAGTACC-G-AA----AAC-TAAAATTGAAA---------TGTCTAAG-GTGAGTTTCTCATATTATCTAATAAAA--TTATGGAAATAAAAAAATGGCG-----TTT--CTT-----------------------------------T------------TTTAAACATATTCACAAATAAATTAACTT--ATTGG-G-TAAAA----TGCGATAGTAGAACTGAACAGAAATTG-----TCATAATCGTTAATTATTAA-ATGACTTTTGGAATATCACGTATTTCACAACTGAATTGAT---A-T-----------T-----------TCTTTTTAATTTGAT--T-TTTT----------AGTTTG-TAT----TTTTGTTA-----------TTT-TT---T-TGGTGTTTT--
gi|3                          :                                                                                                                                                                                     ttttacataATGACTATCCACTTATGCTTACAAAA---GATAACATTGAGGTATC---GTAAAAACAGGCAATAAAGTATTATATATA------------AATGTCGACGACAACATGCACTGGAATACACACCTTCAG-TATGTATATATGTTA-T-----CTTGTTTATAAATGACCTTTATCTAGGACGCGGCCATGTTTATCAATTGAGTAC-------AG-------TTTTACAATAAATACATATCATCTGATCTAAATTATTGCTGTATTATGTAATGTGATTCTCCTATAGTTAATTCATATATAAATACAAAATTAC-------AGCGTAA--A--ATTATGCAAAAC-A---AT-CAATATGTT--TG----TCTAAAAAGAA-AT------CA-TTTCTTAAAA-TATGTTGTCTTTTGAACCAGTTG--TA--T-TTTATTAAA-AATGTTACAGC-ATATACACGATAGTTAATGGA--AT-GTCTCTGGCATATTTAAACGG-----AT--TAAAATCAAA-------TT-------AAAACAAATGACGAAATAGGTACATCAACAAACTTGGGGTCAATGTCAA-----A---ATTCTGTAAAACTT------------------TATAATACCGA-AA----C-C-TTATTATAAAA---------TGTTTAAG-GGAAGTTTGTCATATTCTGTAGTATAA--ATATGA---------TACGTCAAAACTTTGAAATTAAAAATTCCA----------------------TTTC------------TTTAAACATATTCACAG-TACATT--CCTAAATCGGTGTTTAAA----TATGATAGTAGAATTTAA-ATAAATTG-----CCA------TTAATGA--AA-ATAAC-----AACTA----ACGTTT---------ATTGGT---A-A-----------A-----------TGT-----------TTAT-TTTT----------AGTTTA-TTTTCTGGCTTGTTG-----------CAT-ACTAGT-T--TGTTTG--TGTGATATTAT----------------------ATTTATCAAGAA-ACATTC-TA-
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                              aacaaagagacttaaactgaggtataatgaaagtgaGCTGTTCCATTTA-GGTCATTCGTTTATATTTGA-A-AT-TGAAGTTTAAAGGTTGCAGAGAAGAGCAT-T--G---CCATATAAAAT-G---ATACAAAATGAT--------------AAAT---C------TA-TT-------ACTGTACTATCTTTTGAACGAATTGTGTT--T-TCTATTAAA-AA-TGTAAAATTATGTAAAATATAGTAAATGGATTATAGTCGGTAAAATATTTAATTAA-----AT--T--------G-------TTTCATATGAAAACAAAAGACAAG----------CAATATAC-----------TCCAATGCCAA---ACGTAA----ACTT------------------TATAAT--T-A-AAATGACA--TAATA-TAAAAAAAAATTCATGTTTAAG-GGGAATTTGTCTTATGATATAACAAAA---CATGG---------AACGCTA-----TTCAACTTAAA------AACTTGCAAACGTAAAAATGCCGTTTC------------TCTAAACATATTCACAAATAAATT--TCCGAATTAG-T-TTAAA----TGC---AATCTAATTTAA-AGAAATTG-----TCA-------TAATGA--AA-ACAGC-----AACTA----GCTTGT---------ATTGAT---A-A-----------T-----------TTT-----------T--T-tgcaattcgatacactt
gi|5                          :                                                                                                                                                                                                                                                                                          A------------CATGTAATGGAACACACATTTTC-AATATATATATATATAAATATCCTCTTGTTTAT----GGCTTGTATCTAGGAAATGGTATTATTTATCAATT------------------------TCACAATG--TGCATATTGGCTCATCTATATAACTGCCTTGACATGTGGAGACATTCTTCTATAGTGAATTCATGTTAAGTTACAGAATCGCAGAGAAGAGCATGTAAA--ATTATAAAAAAA-AAACAT-CAATATGTT--TG----TTTAGAAAA-A-AC----------------------TGCTGTA-TTTGAACAAACCGT-TTGCT-TTTATCAAA-AG-GACAAAAATATGCACACAATAGTAAGT-GA--GT-GTCCCCGATACGTTTAAACGAAACGCATCAT--------G-------TT-------AGAACGATTGACGAG----------CAAGCTAC-----------ACCAa
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   tgataaaatatcggccaaaatatcgacgacgTT------------------TATAATACC-ACAA----C-C-TAATA---------------TGTTTAAATGGGAGTTTGTTATATTCTGGAATATAA--ATATA----------AAT---------TTCCACTTGAA------A----------------------TTACAAATTACATTTCTTTAGATTTATTCACAGATAAATT--CCTAAATAAG-G-TAAA-----T-------TAG----TAA-ATAAATGT-----TTA------TGAATGA--AA-ATAAC-----AACTA----GCGTTT---------ATTGGT---A-AATATATAATAAC-----------TAT-----------T--C-TTTT----------AGTTTG-TTG----CTTTGTTA-----------TTT-TTCAAC-T--GGTTTT---GTTGTATT----ACAT-AT--TTATTTTGTACATTTATTACGAATACAATT-TACGTT-ATATGATATAttacgctcgaggtcaat
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GTACTATATAGGGTCATTCTTCTATATTTAATACATGTAAAATTACAAAGATGCAGAGAAGAGCATGT--AGCATTATATAAAAG-----AC-CAATATGTT--TG----TCTAG---ATA-AC------------------A-TA---TGTCATATGAACAAATTGT-TT--TATTTA--AAA-AA-TTTAAAACTTTGTACAAAATAGTTTATGGA--AT-GTCCCTTTCATATTTAAACGA-----AT--T--------GTTTCAAATT-------AGTACAAATGGTGAG----------CAAAATAC-----------ATTAA-----A---AC--------ACTTGAGGTCAAACATAAACTCTATAATTCCGG-AA----CA--TAATAATGAct
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            C------------TTTTAACATGTTCACAAATAAATT--TATAAATAGA-G-TAAAATGACTGCGAAAGTAG----------AAATTG-----TC----------ATGA--AACACAAC-----CGCTT----ACGTAT---------ATTGTC---A-A-----------A-----------TGA-----------A--T-TTTTGGAGGGCCACAGATTG-TAT----AATTGTTAGGACGATATTCCTT-TTCTGTAT--TGTTTT--ca
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          tCGAAAGTAGAATTTTA-ATATATTGCTATTTAA------TTAATAA--AA-ATAAC-----AACTA----GCGTTT---------GTTGGTGAGA-A-----------T-----------TTT-----------C--T-TTTT----------GATTTG----------TTGTTA-----------TTTGTTTA-T-T--TTTTTTGACAATGCATTAT--ACAC-----ACATTTTGTATATTTATCATGAATACACTT-TA-TTTAATATGATTTAatgtgtttgtttgttgtttttcagattgtttttgttatattacacattttgt

Unaligned ( gi|14 ): TATCAGGATATTGTATTGATGCAAATAACGAGCACTACGTATCAATACACTTGAGGTCAACGACAAACAGCAACTATATAATACAGTATCCTGATAACGAAATG

lowQualScore                  :                                                                                                                                                                                                                                                                             11111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
lowQualScore                  :                   222                                 1                                               1                            1                        333333333                                        555555555555555              4444444                           00000000000000000000000000                       222                               1111                                         5555555555555555                                                                                                          22222222          222222            88888888888888888888888888888888888888888888888                     22222                                           111111                    88888888888888888888888888888888888               2222222222        000000000000000000000000000000000000000000000000000000000         111  22222222           222222222                                            222222222222222222222           888888888888888888888888888888888888888888888                                            1111                           11111  2222222222              11111               111111111      6666666666666666666666666666666666666666666666      2222222222      222222222       22222222222                    111       555555555555555                                11  1                          
lowQualScore                  :                   222                                 3   6   3                                       5                       1  1 5              1         888888888   1             2                  1   444444444444444       1      9999999        0         1        11111111111111111111111111          7 11         888          1 77 8 0             7777     0         1                   44    8888888888888888          8          0           1          0  0 88               7    7    1        1   3                77777777     0    111111  6         88888888888888888888888888888888888888888888888    7              6 33333         6  6 1      33      44   7777  2  000000  1      0          55555555555555555555555555555555555     6      1  9999999999   1 1  222222222222222222222222222222222222222222222222222222222      1  222  33333333     6 0   222222222        5                   0  0    999     333333333333333333333   6    2  111111111111111111111111111111111111111111111       0                66   2      555     0000 0   2     4      4 1      00000  3333333333    55  4     00000     8888      666666666      5555555555555555555555555555555555555555555555 4    1111111111      111111111       77777777777   5  1 6 8888      666     0 000000000000000         3            8      8  66  0       1                  
lowQualScore                  :                   ...                                 .   .   .                                       .                       .  . .              .         .........   .             .                  .   ...............       .      .......        .         .        ..........................          . ..         ...          . .. . .             ....     .         .                   ..    ................          .          .           .          .  . ..               .    .    .        .   .                ........     .    ......  .         ...............................................    .              . .....         .  . .      ..      ..   ....  .  ......  .      .          ...................................     .      .  ..........   . .  .........................................................      .  ...  ........     . .   .........        .                   .  .    ...     .....................   .    .  .............................................       .                ..   .      ...     .... .   .     .      . .      .....  ..........    ..  .     .....     ....      .........      .............................................. .    ..........      .........       ...........   .  . . ....      ...     . ...............         .            .      .  ..  .       .                  
lowQualScore                  :                   000                                 3   7   7                                       5                       0  0 5              0         555555555   0             5                  0   000000000000000       0      3333333        7         0        66666666666666666666666666          0 55         000          4 00 0 8             0000     6         0                   22    2222222222222222          8          8           0          3  3 33               2    3    0        0   7                22222222     3    000000  7         55555555555555555555555555555555555555555555555    5              7 00000         7  7 0      55      77   3333  5  888888  0      3          55555555555555555555555555555555555     0      0  2222222222   0 0  777777777777777777777777777777777777777777777777777777777      7  444  66666666     5 2   999999999        7                   7  4    666     000000000000000000000   6    3  000000000000000000000000000000000000000000000       3                99   2      111     6666 2   1     6      4 7      00000  2222222222    55  0     00000     5555      000000000      3333333333333333333333333333333333333333333333 4    9999999999      444444444       11111111111   7  7 6 3333      111     8 666666666666666         2            8      0  88  0       2                  
consensus                     : NNNNNNNNNNNTGTATAT-C-AGATGATACTACAATTTATGATATTCAATTAGA-TAAGGCAGATCTCGAACGAAATTTACAATGTTTACTAAATTATCTTTTAAACTGGTGTAGAGAGAACGGAANGCNAATAAACAGCGACAAANCAAAGGTCATGTTCATAACAGNGCGAAAGCGTATACGCATCGATAATTATTCACNTATGCTTA---AA---GGTAACATTNAGCTATC---N--ACAGCAGGCGATAAAATANTAGGTATA------------AA------------CATGCAATGGAATACACATTTTC-G-TATGTATATAAATTA-TATCGTCTTGTTTGT----GACTTTTATCTAGGANACGGCCATATTTATCAATTGAACAC-------AG-------TTTTACAATGCATGCATATTATCTCATCTAAATNACTGCTGTACTATATAAGGTCATTCTTCTATATTTAATACATGTAAAATTACAAAGTTGCAGAGAAGAGCATGT--A--ATTATATAAAAN-A---AT-CAATATGTT--TG----TCTAGAAAATA-AC------CA-TT-------A-TGTGCTGTCTTTTGAACAAATTGT-TT--T-TTTATTAAA-AA-GNTAAAACTATGTACACGATAGTTAATGGA--AT-GTCNCCGACATATTTAAACGA-----AT--T--------G-------TT-------AGAACAAATGACGAG----------CAANANAC-----------GTCAA-----A---AC--------ACTT------------------TATAATACC-A-AA----CAC-TAATAATGAAA---------TGTTTAAG-GGGAGTTTGTCATATTCTGGAACAAAA--ATATGG---------AACGCCG-----TTCNACTTAAA------A----------------------TTAC------------TTTAAACATATTCACAGATAAATT--CCTGAATTGG-G-TAAAA----TGCGAAAGTAGAATTTAA-ATAAATTG-----TCA------TTAATGA--AA-ATAAC-----AACTA----GCGTTT---------ATTGGT---A-A-----------T-----------TNT-----------T--T-TTTT----------AGTTTG-TNT----NTTTGTTA-----------TTT-TTCAGT-T--TGTTTT--CGTTGTATTAT-AACAT-A---ATATTTTGTACATTTATCATGAANACATTT-TA-GTT-ATATGATATAATATGACGTTCTTTGT
Reference ( family-780 )      : NNNNNNNNNNNTGTATAT-C-AGATGATACTACAATTTATGATATTCAATTAGA-TAAGGCAGATCTCGAACGAAATTTACAATGTTTACTAAATTATCTTTTAAACTGGTGTAGAGAGAACGGAANGCNAATAAACAGCGACAAANCAAAGGTCATGTTCATAACAGNGCGAAAGCGTATACGCATCGATAATTATTCACNTATGCTTA---AA---GGTAACATTNAGCTATC---N--ACAGCAGGCGATAAAATANTAGGTATA------------AA------------CATGCAATGGAATACACATTTTC-G-TATGTATATAAATTA-TATCGTCTTGTTTGT----GACTTTTATCTAGGANACGGCCATATTTATCAATTGAACAC-------AG-------TTTTACAATGCATGCATATTATCTCATCTAAATNACTGCTGTACTATATAAGGTCATTCTTCTATATTTAATACATGTAAAATTACAAAGTTGCAGAGAAGAGCATGT--A--ATTATATAAAAN-A---AT-CAATATGTT--TG----TCTAGAAAATA-AC------CA-TT-------A-TGTGCTGTCTTTTGAACAAATTGT-TT--T-TTTATTAAA-AA-GNTAAAACTATGTACACGATAGTTAATGGA--AT-GTCNCCGACATATTTAAACGA-----AT--T--------G-------TT-------AGAACAAATGACGAG----------CAANANAC-----------GTCAA-----A---AC--------ACTT------------------TATAATACC-A-AA----CAC-TAATAATGAAA---------TGTTTAAG-GGGAGTTTGTCATATTCTGGAACAAAA--ATATGG---------AACGCCG-----TTCNACTTAAA------A----------------------TTAC------------TTTAAACATATTCACAGATAAATT--CCTGAATTGG-G-TAAAA----TGCGAAAGTAGAATTTAA-ATAAATTG-----TCA------TTAATGA--AA-ATAAC-----AACTA----GCGTTT---------ATTGGT---A-A-----------T-----------TNT-----------T--T-TTTT----------AGTTTG-TNT----NTTTGTTA-----------TTT-TTCAGT-T--TGTTTT--CGTTGTATTAT-AACAT-A---ATATTTTGTACATTTATCATGAANACATTT-TA-GTT-ATATGATATAATATGACGTTCTTTGT
gi|1                          :            TGTATGT-T-ATATGATACTAAAATTTATGATTTTCAATTAGA-TAAGGCAGATCGTGAACTAAATTTACAATGTTCGCTAAATTATCTTTTAAACTGGTGTAGAGAGAATGGAATGTTA-TAAACAGTGACAAATCAAAGGTCA---------CAGCGTAAAAGCGTATACACATCAGTAATAATTCACCTAT-----------------ATATTTAGCTAT----A--ACAGCAGGTGATAACATAGTCGGTACA------------AA------------CATGCAATGGGATGCACATTTTCTG-TATATATATAAATTA-TACCGTCTTGTTTGT----GACGTTTATCTAGGATACGGTCATATTTATCAATTAAACACTGTTTATAG-------TTTTATAATGCATGCATATTACCTCAGCTAAATTACTGCTGTACTATATGAGGTCATTCATCTATATTTAATACATGTAAAATTATAAACTTGCATAGAAGAGCA-----A--ATTATACAAAAATA---GT-CAATACACTACTGACAGCCTAGAAAATGCACGTTTCCCACTT-------A-TGTGCTGCCTTTTGAACAAACTGT-TA--A-TTTATTAAA-AC-GTTCAAACTGTGTACATTATACATGATGAA--AT--TCACCGACAAATATAAACGA-----AT-----------G----------------AGAACTAATGATGAG----------CAACACAC-----------ATTAA-----A---AC--------CCTT------------------TATAATATC-A-AA----CAC-TAGCAATGAAA---------TATTTAAA-GGGAGTGTGACCTATTCTAGAACAAAA--ATATGG---------AATGCTG-----TTCTACTTGAA------A----------------------TTAC------------TTTAATCGTATTCACAAACAAATT--CCCGAATTAA-G-TAAAA----TGCGAAAATAGCGTTTAA-ATAAAATG-----TCG------TTTACGA--AA-ATATC-----AATTA----GCGTTT---------ATTGGT-----A-----------T-----------TGC-----------T--T-TTTT----------AGTTTG-TGT----ATTTGTTG-----------TTT-TTCAGT-A--TGTTTT--CATTGTATTACAAACAT-AATTATATTTTATACATTTATCATTAAAACATTT-TA--TT-ATTTTATGTAATATGACGTTCTTTGT
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ccgtttgaaatAAGTG-----TCA------TTAATGA--AA-ATAAC-----AACAA----GCGCTT---------ATTGGT---ATA-----------TAACTATATATGTAT-----------T--TCTTTT----------AGTTCGTTTT----TTTTGTTA-----------ATT-TCCATT-T--TGCTTT--AGTTGT-T--T-AACATAA---ATATTTTGTAAACTTATCATGTAAACATTTAAA-GTT-ATATGATATAATgatacgataaacttattttaagagagcctcaatga
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AC-TTATAAGCAAA---------T--TTAAG-GA-AGTTTATCATATTCTGGAGAAAAATAATATGG---------AACTCCA-----TTACACTTAAA------A----------------------TTA--------------------------A-AGAGAAATT--CCTGAATTGG-G-TAAAA----TGCGAAAGTAGAATTTAA-AGAAATTG-----CC----------ATGA--AA-ATAAC-----AAATA----ACATTT---------ATTGtt
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          tAT-----------GTCAA-----ACAGAT--------A-TT------------------TATAATACA-A-AA-----ACGTAATAATGAAA---------CGTTTAAT-CGGAGATTGTCATATTCTGGAAC-AAA--ATATGG---------AACGCTA-----TTCGAATTAAA------A----------------------TTA
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             caatacatttgaagtcaATA--CCTGAAATGG-A-CAAAA----TACGAAAGTTGAATTTGA-ATAAATTG-----TT----------ATGA--AA-AAAAT-----ATCTA----ACGTTT---------ATTGGT---ATA-----------T-----------ACTA----------T--A-TTTT----------AGTTTG--AT----GTTTaaaatatcgtttg
gi|15                         :          aatgTATAT-CCAGAGTATGCTACAATTTATGATATTCAATTAGA-TAAGGCAAATCTCGAACGAAATATACAATGTGTATTAAAt
gi|16                         :                                                                                                                                                                                                                                                                                                                               acagattACATCAAATA-TATCGTCTTGTTTGT----GGCTTTTATATCTGATACGGCCACATTTATCAAATGAACA
gi|2                          :            TGTATATGC-AGATGATACTACACTTTATGATAGTCAATCAGACTAA------TTTCGAACGAAATTGAAAGTGTTTACTAAATTATCTTT-AAACTGATGTAAAGAGAACGGAAAGCAAATAAACAGCAACAAAACAAAAGTCATGTTCATAACAAGGCGAAAACATATAAGCATTGATAATTATTCACGTATGCTTA---AACATAGTAACATTCAGCAATCCTTC--ACAGCAGCTGATAAAATAATAGGTATAACTATCGACGACAA------------CATGCAATGA-------ATTTTA-A-TATGTATATAAA--A-AATTGTCTTGTACGT----GACTTGTATCAAGAAGATGGCCATATTTATAAATTGTACAC-------AGCTTATACTTTTATATTGCATACACATTATCTCATCTAAAAAACTGCAGTACAATAT-AGCTCATTCTTTTA-A--TAA-ACATGTAAACT-------CTGCAGAGAAGAGCATGTAGA--GTTATTTAAAAA-A---AT-CAACATGTT--AG----TCTCCAACAT-----------A-TT-------A--------------GAACAAATTGT-T---------TTAAATAA-GAGCAAATGGCGAACACGATA----------------CATCAATACACTTG----------------------------------------AGATC-AATGAC-AG----------AAAGAAAC-----------G--------------------------T------------------TATAGTACC-G-AA----AAC-TAAAATTGAAA---------TGTCTAAG-GTGAGTTTCTCATATTATCTAATAAAA--TTATGGAAATAAAAAAATGGCG-----TTT--CTT-----------------------------------T------------TTTAAACATATTCACAAATAAATTAACTT--ATTGG-G-TAAAA----TGCGATAGTAGAACTGAACAGAAATTG-----TCATAATCGTTAATTATTAA-ATGACTTTTGGAATATCACGTATTTCACAACTGAATTGAT---A-T-----------T-----------TCTTTTTAATTTGAT--T-TTTT----------AGTTTG-TAT----TTTTGTTA-----------TTT-TT---T-TGGTGTTTT--
gi|3                          :                                                                                                                                                                                     ttttacataATGACTATCCACTTATGCTTACAAAA---GATAACATTGAGGTATC---GTAAAAACAGGCAATAAAGTATTATATATA------------AATGTCGACGACAACATGCACTGGAATACACACCTTCAG-TATGTATATATGTTA-T-----CTTGTTTATAAATGACCTTTATCTAGGACGCGGCCATGTTTATCAATTGAGTAC-------AG-------TTTTACAATAAATACATATCATCTGATCTAAATTATTGCTGTATTATGTAATGTGATTCTCCTATAGTTAATTCATATATAAATACAAAATTAC-------AGCGTAA--A--ATTATGCAAAAC-A---AT-CAATATGTT--TG----TCTAAAAAGAA-AT------CA-TTTCTTAAAA-TATGTTGTCTTTTGAACCAGTTG--TA--T-TTTATTAAA-AATGTTACAGC-ATATACACGATAGTTAATGGA--AT-GTCTCTGGCATATTTAAACGG-----AT--TAAAATCAAA-------TT-------AAAACAAATGACGAAATAGGTACATCAACAAACTTGGGGTCAATGTCAA-----A---ATTCTGTAAAACTT------------------TATAATACCGA-AA----C-C-TTATTATAAAA---------TGTTTAAG-GGAAGTTTGTCATATTCTGTAGTATAA--ATATGA---------TACGTCAAAACTTTGAAATTAAAAATTCCA----------------------TTTC------------TTTAAACATATTCACAG-TACATT--CCTAAATCGGTGTTTAAA----TATGATAGTAGAATTTAA-ATAAATTG-----CCA------TTAATGA--AA-ATAAC-----AACTA----ACGTTT---------ATTGGT---A-A-----------A-----------TGT-----------TTAT-TTTT----------AGTTTA-TTTTCTGGCTTGTTG-----------CAT-ACTAGT-T--TGTTTG--TGTGATATTAT----------------------ATTTATCAAGAA-ACATTC-TA-
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                              aacaaagagacttaaactgaggtataatgaaagtgaGCTGTTCCATTTA-GGTCATTCGTTTATATTTGA-A-AT-TGAAGTTTAAAGGTTGCAGAGAAGAGCAT-T--G---CCATATAAAAT-G---ATACAAAATGAT--------------AAAT---C------TA-TT-------ACTGTACTATCTTTTGAACGAATTGTGTT--T-TCTATTAAA-AA-TGTAAAATTATGTAAAATATAGTAAATGGATTATAGTCGGTAAAATATTTAATTAA-----AT--T--------G-------TTTCATATGAAAACAAAAGACAAG----------CAATATAC-----------TCCAATGCCAA---ACGTAA----ACTT------------------TATAAT--T-A-AAATGACA--TAATA-TAAAAAAAAATTCATGTTTAAG-GGGAATTTGTCTTATGATATAACAAAA---CATGG---------AACGCTA-----TTCAACTTAAA------AACTTGCAAACGTAAAAATGCCGTTTC------------TCTAAACATATTCACAAATAAATT--TCCGAATTAG-T-TTAAA----TGC---AATCTAATTTAA-AGAAATTG-----TCA-------TAATGA--AA-ACAGC-----AACTA----GCTTGT---------ATTGAT---A-A-----------T-----------TTT-----------T--T-tgcaattcgatacactt
gi|5                          :                                                                                                                                                                                                                                                                                          A------------CATGTAATGGAACACACATTTTC-AATATATATATATATAAATATCCTCTTGTTTAT----GGCTTGTATCTAGGAAATGGTATTATTTATCAATT------------------------TCACAATG--TGCATATTGGCTCATCTATATAACTGCCTTGACATGTGGAGACATTCTTCTATAGTGAATTCATGTTAAGTTACAGAATCGCAGAGAAGAGCATGTAAA--ATTATAAAAAAA-AAACAT-CAATATGTT--TG----TTTAGAAAA-A-AC----------------------TGCTGTA-TTTGAACAAACCGT-TTGCT-TTTATCAAA-AG-GACAAAAATATGCACACAATAGTAAGT-GA--GT-GTCCCCGATACGTTTAAACGAAACGCATCAT--------G-------TT-------AGAACGATTGACGAG----------CAAGCTAC-----------ACCAa
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   tgataaaatatcggccaaaatatcgacgacgTT------------------TATAATACC-ACAA----C-C-TAATA---------------TGTTTAAATGGGAGTTTGTTATATTCTGGAATATAA--ATATA----------AAT---------TTCCACTTGAA------A----------------------TTACAAATTACATTTCTTTAGATTTATTCACAGATAAATT--CCTAAATAAG-G-TAAA-----T-------TAG----TAA-ATAAATGT-----TTA------TGAATGA--AA-ATAAC-----AACTA----GCGTTT---------ATTGGT---A-AATATATAATAAC-----------TAT-----------T--C-TTTT----------AGTTTG-TTG----CTTTGTTA-----------TTT-TTCAAC-T--GGTTTT---GTTGTATT----ACAT-AT--TTATTTTGTACATTTATTACGAATACAATT-TACGTT-ATATGATATAttacgctcgaggtcaat
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GTACTATATAGGGTCATTCTTCTATATTTAATACATGTAAAATTACAAAGATGCAGAGAAGAGCATGT--AGCATTATATAAAAG-----AC-CAATATGTT--TG----TCTAG---ATA-AC------------------A-TA---TGTCATATGAACAAATTGT-TT--TATTTA--AAA-AA-TTTAAAACTTTGTACAAAATAGTTTATGGA--AT-GTCCCTTTCATATTTAAACGA-----AT--T--------GTTTCAAATT-------AGTACAAATGGTGAG----------CAAAATAC-----------ATTAA-----A---AC--------ACTTGAGGTCAAACATAAACTCTATAATTCCGG-AA----CA--TAATAATGAct
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            C------------TTTTAACATGTTCACAAATAAATT--TATAAATAGA-G-TAAAATGACTGCGAAAGTAG----------AAATTG-----TC----------ATGA--AACACAAC-----CGCTT----ACGTAT---------ATTGTC---A-A-----------A-----------TGA-----------A--T-TTTTGGAGGGCCACAGATTG-TAT----AATTGTTAGGACGATATTCCTT-TTCTGTAT--TGTTTT--ca
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          tCGAAAGTAGAATTTTA-ATATATTGCTATTTAA------TTAATAA--AA-ATAAC-----AACTA----GCGTTT---------GTTGGTGAGA-A-----------T-----------TTT-----------C--T-TTTT----------GATTTG----------TTGTTA-----------TTTGTTTA-T-T--TTTTTTGACAATGCATTAT--ACAC-----ACATTTTGTATATTTATCATGAATACACTT-TA-TTTAATATGATTTAatgtgtttgtttgttgtttttcagattgtttttgttatattacacattttgt


blockSeqs                     :                   CC                                  C   G   A                                       .                       A  A A              A         TGTTCATAA   G             A                  G   GCTTAAACATAG          C      CCTTC                    A        ACTATCGACGACAA                      A TA         AG           A AT A               AAAT               T                   GA    AGCTTATAC                 C                      A               AA               G    T    G        C   A                GTAGAG            AAAAC   A         TGTCTAAAAAGAAATCATTTCTTAAAATATGT                   T              G TGCT          T  T A      GG      CG   GTTA  G  TTATAG  A                 ATTAAAATCAAATT                          A      G  ATAGGTACAT   G A  TTGGGGTCAATGTCAAAATTCTGTAAAACTT                                A  GA   ATGACA       A     AAAAATTCA        T                           TAA     AAATAAAAAAATGGCG        C    A  AACTTGCAAACGTAAAAATGCCGTTTC                                          AA   G      TGT     TGAC     A     A      C G      CTATT  ATAATCGTTA    TT  C     TTTTG     TCAC      CACAACTGA      ATATAACTATATATGTATT                            C    GGAGGGCCAC      TTTTCTGG        GGACGATATTC   G  C T TGG       GAC       TAACATAAA               A            A      A  CG  A       A
blockSeqs                     :                   GC                                  .   .   .                                                                                                                                          T   GCTTACAAAAGA          G      CGTA                     T        AATGTCGACGACAA                      A CA         AA           A TT .               .                  G                   GT    AG                        A                      T               GG               T    T    A        A   G                GTAAAA            AA      .         TGTTTAGAAAAAACTGC                                  T              . TTA           .  . T      TA      CG   GTAA  G  ATG     T                 ATTGTTTCATATG                           A      A  .            C A  ATTAAAACACTTGAGGTCAAACATAAACTC                                 A  AC   ACG          A     .                .                           A       TACGTCAAAACT            G    A  ATTACAAATTACATTTC                                                    .    G      G       .        A     A      . T      .      ATTA          .   .     .         .         .              ATTTCTTTTTAATTTGAT                             .    .               TTTTT           .             .  T G AT        A         TACATATT                C            T      .  G   .       A
blockSeqs                     :                                                                                                                                                                                                                                                                                                                 . .          A            T TA .               .                  C                   GA    .                         .                      A               AG               G    T    G        C   A                GTAGCA            CA      .         AGTCTCCAACATATTA                                   A              . AT            .  . G      TA      AT   GTAA  G  GTG     G                 AACGCATCATGTT                           G      G  .            T T  TCCAATGCCAAACGTAAACTT                                          A  GG   AAC          T     .                .                           T       AACTCCA                 A    A  AATTCCATTTC                                                          .    A      A       .        T     A      . G      .      ATTA          .   .     .         .         .              AAATATATAATAACTATT                             .    .               TATT            .             .  C A T         T         TATACACA                T            T      .  T   .       T
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                           T .  .               .                  A                   .                                                                      A                T    .    G        C   G                AAAA              TG      .         AAATCTATTACTGTAC                                   .              . TT            .  . A      TT      CA   GTTT  .  ATG     C                 ATTGTTTCAAATT                           A      G  .            G T  GTCAAACAGATATT                                                 A  A    CC           A     .                .                           A       AACGCTA                 A    A  ATTA                                                                 .    G      G       .        T     A      . T      .      ATGA          .   .     .         .         .              GAGAATTTTC                                     .    .               TTGC            .             .  C G T         .         TAT                     .            .      .               
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                              A                .    .    .        .   .                TG                G       .         TGTCTAGATAACATA                                    .              . .             .  . T      A       AA   .     .  .       C                 .                                       .      .  .            A T  GT                                                             T  G    CC           A     .                .                           A       AACGCTA                 C    G  T                                                                    .    A      T       .        A     A      . G      .      ATTA          .   .     .         .         .              ATATACTAT                                      .    .               TATA            .             .  T . T                                                                               
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            .  A    CA           .     .                .                           .       AAT                     .    .                                                                       .    A      G       .        A     A      . T      .      ATA           .   .     .         .         .              AAATGTTTA                                      .    .               ATG             .             .  . . T                                                                               
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 .                                                                                                                                                               .    .      G       .        .     .      . T      .      .             .   .     .         .         .              AATTTTT                                        .    .               .                                                                                                                    
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              .     .      . .      .      .             .   .     .         .         .              AAATGAA                                        .                                                                                                                                         
blockSeqs                     :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    .      .             .   .     .         .         .                                                                                                                                                                                                       


blockSeqCons                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTAGAA**          CG****            NGTCTAGATAANATAC*******************************                                                                     ATG***                    ATCGTTTCATATT**********************                                                                                                        ACN*****                                                                                                AACTCGTTTC***********************************                                                                                                                                             AAATGTTTN*************************************                                                                               TACACAA********
originalCons                  : NNNNNNNNNNNTGTATAT-C-AGATGATACTACAATTTATGATATTCAATTAGA-TAAGGCAGATCTCGAACGAAATTTACAATGTTTACTAAATTATCTTTTAAACTGGTGTAGAGAGAACGGAANGCNAATAAACAGCGACAAANCAAAGGTCATGTTCATAACAGNGCGAAAGCGTATACGCATCGATAATTATTCACNTATGCTTA---AA---GGTAACATTNAGCTATC---N--ACAGCAGGCGATAAAATANTAGGTATA------------AA------------CATGCAATGGAATACACATTTTC-G-TATGTATATAAATTA-TATCGTCTTGTTTGT----GACTTTTATCTAGGANACGGCCATATTTATCAATTGAACAC-------AG-------TTTTACAATGCATGCATATTATCTCATCTAAATNACTGCTGTACTATATAAGGTCATTCTTCTATATTTAATACATGTAAAATTACAAAGTTGCAGAGAAGAGCATGT--A--ATTATATAAAAN-A---AT-CAATATGTT--TG----TCTAGAAAATA-AC------CA-TT-------A-TGTGCTGTCTTTTGAACAAATTGT-TT--T-TTTATTAAA-AA-GNTAAAACTATGTACACGATAGTTAATGGA--AT-GTCNCCGACATATTTAAACGA-----AT--T--------G-------TT-------AGAACAAATGACGAG----------CAANANAC-----------GTCAA-----A---AC--------ACTT------------------TATAATACC-A-AA----CAC-TAATAATGAAA---------TGTTTAAG-GGGAGTTTGTCATATTCTGGAACAAAA--ATATGG---------AACGCCG-----TTCNACTTAAA------A----------------------TTAC------------TTTAAACATATTCACAGATAAATT--CCTGAATTGG-G-TAAAA----TGCGAAAGTAGAATTTAA-ATAAATTG-----TCA------TTAATGA--AA-ATAAC-----AACTA----GCGTTT---------ATTGGT---A-A-----------T-----------TNT-----------T--T-TTTT----------AGTTTG-TNT----NTTTGTTA-----------TTT-TTCAGT-T--TGTTTT--CGTTGTATTAT-AACAT-A---ATATTTTGTACATTTATCATGAANACATTT-TA-GTT-ATATGATATAATATGACGTTCTTTGT
finalCons                     : NNNNNNNNNNNTGTATAT-C-AGATGATACTACAATTTATGATATTCAATTAGA-TAAGGCAGATCTCGAACGAAATTTACAATGTTTACTAAATTATCTTTTAAACTGGTGTAGAGAGAACGGAANGCNAATAAACAGCGACAAANCAAAGGTCATGTTCATAACAGNGCGAAAGCGTATACGCATCGATAATTATTCACNTATGCTTA---AA---GGTAACATTNAGCTATC---N--ACAGCAGGCGATAAAATANTAGGTATA------------AA------------CATGCAATGGAATACACATTTTC-G-TATGTATATAAATTA-TATCGTCTTGTTTGT----GACTTTTATCTAGGANACGGCCATATTTATCAATTGAACAC-------AG-------TTTTACAATGCATGCATATTATCTCATCTAAATNACTGCTGTACTATATAAGGTCATTCTTCTATATTTAATACATGTAAAATTACAAAGTTGCAGAGAAGAGCATGTAGAA--TTATATAAAACG----AT-CAATATGTTNGTCTAGATAANATAC-------------------------------TGTCTTTTGAACAAATTGT-TT--T-TTTATTAAA-AA-GNTAAAACTATGTACACGATAGTTAATGGAATG---TCNCCGACATATTTAAACGAATCGTTTCATATT----------------------AGAACAAATGACGAG----------CAANANAC-----------GTCAA-----A---AC--------ACTT------------------TATAATACC-A-AAACN-----TAATAATGAAA---------TGTTTAAG-GGGAGTTTGTCATATTCTGGAACAAAA--ATATGG---------AACGCCG-----TTCNACTTAAAAACTCGTTTC-----------------------------------TTTAAACATATTCACAGATAAATT--CCTGAATTGG-G-TAAAA----TGCGAAAGTAGAATTTAA-ATAAATTG-----TCA------TTAATGA--AA-ATAAC-----AACTA----GCGTTT---------ATTGGTAAATGTTTN-------------------------------------T-TTTT----------AGTTTG-TNT----NTTTGTTA-----------TTT-TTCAGT-T--TGTTTT--CGTTGTATTACACAA--------TATTTTGTACATTTATCATGAANACATTT-TA-GTT-ATATGATATAATATGACGTTCTTTGT

Unaligned ( gi|14 ): TATCAGGATATTGTATTGATGCAAATAACGAGCACTACGTATCAATACACTTGAGGTCAACGACAAACAGCAACTATATAATACAGTATCCTGATAACGAAATG

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      11111111111111111111111111                                                                                                                                                                                                                                                                                   1111111111111111111111111111111                                                                                                                                                 1111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                          1111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                       
lowQualScore                  :                                                                                                                                                                                                                                                                                                                            222                                 1                                               1                          11                        333333333                                         555555555555555              4444444                           00000000000000000000000000                       222                               1111                                         5555555555555555                                                                                                         2222222          2222222    11       111111         0000000000000000000000000000000                   2222222                                           11                         222222222                      2222222222        2222222222222222222222222222222222222222222222222222222222222222222222222222                            222222222                                               3333333333            0000000000000000000000000000       111                                         1111                           11111  2222222222              11111               111111111      5555555555555555555555555555555555555555    1111111111      111111111       22222222222                    111          44444444444                                 11  1                          
lowQualScore                  :                                                                                                                                                                                                                                                                                                                            222                                 3   6   3                                       5                       1  66               1        888888888    1             2                  1   444444444444444       1      9999999        0         1        11111111111111111111111111          7 11         888          1 77 8 0             7777     0         1                   44    8888888888888888          8          0           1          0  0 88               7    7    1        1   3               0000000   2      1111111    44       999999    1    0000000000000000000000000000000    7              0000000  3      6  6 1      33      44     1      11  6   1                  333333333   8  3               9999999999   1 1  6666666666666666666666666666666666666666666666666666666666666666666666666666      1     888  1    00 0  222222222         5                   0  55   77        0000000000  33 4      1111111111111111111111111111       000    0                66   2      555     0000 0   2     4      4 1      00000  3333333333    55  4     00000     8888      666666666      7777777777777777777777777777777777777777    9999999999      777777777       33333333333   5  0 555 66      666       3  22222222222          1            8      8  66  0       1                  
lowQualScore                  :                                                                                                                                                                                                                                                                                                                            ...                                 .   .   .                                       .                       .  ..               .        .........    .             .                  .   ...............       .      .......        .         .        ..........................          . ..         ...          . .. . .             ....     .         .                   ..    ................          .          .           .          .  . ..               .    .    .        .   .               .......   .      .......    ..       ......    .    ...............................    .              .......  .      .  . .      ..      ..     .      ..  .   .                  .........   .  .               ..........   . .  ............................................................................      .     ...  .    .. .  .........         .                   .  ..   ..        ..........  .. .      ............................       ...    .                ..   .      ...     .... .   .     .      . .      .....  ..........    ..  .     .....     ....      .........      ........................................    ..........      .........       ...........   .  . ... ..      ...       .  ...........          .            .      .  ..  .       .                  
lowQualScore                  :                                                                                                                                                                                                                                                                                                                            000                                 3   7   7                                       5                       0  55               0        555555555    0             5                  0   000000000000000       0      3333333        7         0        66666666666666666666666666          0 55         000          4 00 0 8             0000     6         0                   22    2222222222222222          8          8           0          3  3 33               2    3    0        0   7               8888888   2      5555555    22       222222    0    8888888888888888888888888888888    5              7777777  2      7  7 0      55      77     4      00  7   0                  333333333   0  3               2222222222   0 0  1111111111111111111111111111111111111111111111111111111111111111111111111111      7     888  0    88 2  999999999         7                   7  44   99        0000000000  77 3      8888888888888888888888888888       000    3                99   2      111     6666 2   1     6      4 7      00000  2222222222    55  0     00000     5555      000000000      9999999999999999999999999999999999999999    4444444444      222222222       88888888888   0  2 666 99      222       5  00000000000          4            8      0  88  0       2                  
consensus                     :                                                                                                                                                                                                                                                                                                          NNNNNNNNNNNTGTATAT-C-AGATGATACTACAATTTATGATATTCAATTAGA-TAAGGCAGATCTCGAACGAAATTTACAATGTTTACTAAATTATCTTTTAAACTGGTGTAGAGAGAACGGAANGCNAATAAACAGCGACAAANCAAAGGTCATGTTCATAACAGNGCGAAAGCGTATACGCATCGATAATTATTCACNTATGCTTA---AA---GGTAACATTNAGCTATC---N--ACAGCAGGCGATAAAATANTAGGTATA------------AA------------CATGCAATGGAATACACATTTTC-G-TATGTATATAAATTA-TATCGTCTTGTTTGT----GACTTTTATCTAGGANACGGCCATATTTATCAATTGAACAC-------AG-------TTTTACAATGCATGCATATTATCTCATCTAAATNACTGCTGTACTATATAAGGTCATTCTTCTATATTTAATACATGTAAAATTACAAAGTTGCAGAGAAGAGCAT------GTAAAATTAT----AC-AAAACGATCAATA------TGTTNGTCTAGA-----------------TAANA-TAC--TGTCTTTTGAACAAATTGT-TT--T-TTTATTAAA-AA-GNTAAAACTATGTACACGATAGTTAATGGA--AT-GTCNCCGACATATTTAAACGAATTGTT----TCAAATTAGAACAAATGACGAG----------CAANATAC-----------GTC------------------------AAA---AN--------ACTT------------------TATAATACCGAA---ACCTAATAATGAA---------ATGTTTAAG-GGGAGTTTGTCATATTCTGGAACAAAA--ATATGGAACGCTA-----TTCNACTTAAAA------A-T-----------------CGTTTCTTT---AAACATATTCACAGATAAATT--CCTGAATTGG-G-TAAAA----TGCGAAAGTAGAATTTAA-ATAAATTG-----TCA------TTAATGA--AA-ATAAC-----AACTA----GCGTTT---------ATTGGT--A-A---------ATGT-T--------TTT---------TTTT----------AGTTTG-TNT----NTTTGTTA-----------TTT-TTCAGT-T--TGTTTT--CGTTGTATTAC--AC-AT----ATATTTTGTACATTTATCATGAANACATTT-TA-GTT-ATATGATATAATATGACGTTCTTTGT
Reference ( family-780 )      :                                                                                                                                                                                                                                                                                                          NNNNNNNNNNNTGTATAT-C-AGATGATACTACAATTTATGATATTCAATTAGA-TAAGGCAGATCTCGAACGAAATTTACAATGTTTACTAAATTATCTTTTAAACTGGTGTAGAGAGAACGGAANGCNAATAAACAGCGACAAANCAAAGGTCATGTTCATAACAGNGCGAAAGCGTATACGCATCGATAATTATTCACNTATGCTTA---AA---GGTAACATTNAGCTATC---N--ACAGCAGGCGATAAAATANTAGGTATA------------AA------------CATGCAATGGAATACACATTTTC-G-TATGTATATAAATTA-TATCGTCTTGTTTGT----GACTTTTATCTAGGANACGGCCATATTTATCAATTGAACAC-------AG-------TTTTACAATGCATGCATATTATCTCATCTAAATNACTGCTGTACTATATAAGGTCATTCTTCTATATTTAATACATGTAAAATTACAAAGTTGCAGAGAAGAGCAT------GTAGAATTAT----AT-AAAACGATCAATA------TGTTNGTCTAGA-----------------TAANA-TAC--TGTCTTTTGAACAAATTGT-TT--T-TTTATTAAA-AA-GNTAAAACTATGTACACGATAGTTAATGGA--AT-GTCNCCGACATATTTAAACGAATCGTT----TCATATTAGAACAAATGACGAG----------CAANANAC-----------GTC------------------------AAA---AC--------ACTT------------------TATAATACCAAA---ACNTAATAATGAA---------ATGTTTAAG-GGGAGTTTGTCATATTCTGGAACAAAA--ATATGGAACGCCG-----TTCNACTTAAAA------ACT-----------------CGTTTCTTT---AAACATATTCACAGATAAATT--CCTGAATTGG-G-TAAAA----TGCGAAAGTAGAATTTAA-ATAAATTG-----TCA------TTAATGA--AA-ATAAC-----AACTA----GCGTTT---------ATTGGT--A-A---------ATGT-T--------TNT---------TTTT----------AGTTTG-TNT----NTTTGTTA-----------TTT-TTCAGT-T--TGTTTT--CGTTGTATTAC--AC-A-----ATATTTTGTACATTTATCATGAANACATTT-TA-GTT-ATATGATATAATATGACGTTCTTTGT
gi|1                          :                                                                                                                                                                                                                                                                                                                     TGTATGT-T-ATATGATACTAAAATTTATGATTTTCAATTAGA-TAAGGCAGATCGTGAACTAAATTTACAATGTTCGCTAAATTATCTTTTAAACTGGTGTAGAGAGAATGGAATGTT-ATAAACAGTGACAAATCAAAGGTC---------ACAGCGTAAAAGCGTATACACATCAGTAATAATTCACCTAT-----------------ATATTTAGCTAT----A--ACAGCAGGTGATAACATAGTCGGTACA------------AA------------CATGCAATGGGATGCACATTTTCTG-TATATATATAAATTA-TACCGTCTTGTTTGT----GACGTTTATCTAGGATACGGTCATATTTATCAATTAAACACTGTTTATAG-------TTTTATAATGCATGCATATTACCTCAGCTAAATTACTGCTGTACTATATGAGGTCATTCATCTATATTTAATACATGTAAAATTATAAACTTGCATAGAAGAGCA-----------AATTAT----ACAAAAATAGTCAATACACTACTGACAGCCTAGAAAATGCACGTTTCCCACTTATG-TGC--TGCCTTTTGAACAAACTGT-TA--A-TTTATTAAA-AC-GTTCAAACTGTGTACATTATACATGATGAA--AT--TCACCGACAAATATAAACGAAT-G-------------AGAACTAATGATGAG----------CAACACAC-----------ATT------------------------AAA---AC--------CCTT------------------TATAATATCAAA---CACTAGCAATGAA---------ATATTTAAA-GGGAGTGTGACCTATTCTAGAACAAAA--ATATGGAATGCTG-----TTCTACTTGAAA----------------------------TTACTTT---AATCGTATTCACAAACAAATT--CCCGAATTAA-G-TAAAA----TGCGAAAATAGCGTTTAA-ATAAAATG-----TCG------TTTACGA--AA-ATATC-----AATTA----GCGTTT---------ATTGGT----A---------TTGC-T----------T---------TTTT----------AGTTTG-TGT----ATTTGTTG-----------TTT-TTCAGT-A--TGTTTT--CATTGTATTACAAAC-ATAATTATATTTTATACATTTATCATTAAAACATTT-TA--TT-ATTTTATGTAATATGACGTTCTTTGT
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ccgtttgaaatAAGTG-----TCA------TTAATGA--AA-ATAAC-----AACAA----GCGCTT---------ATTGGT--ATATAACTATATATGTAT--------TTC---------TTTT----------AGTTCGTTTT----TTTTGTTA-----------ATT-TCCATT-T--TGCTTT--AGTTGTTTAAC--ATAA-----ATATTTTGTAAACTTATCATGTAAACATTTAAA-GTT-ATATGATATAATgatacgataaacttattttaagagagcctcaatga
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ---ACTTA-TAAGCAA---------AT--TTAAG-GA-AGTTTATCATATTCTGGAGAAAAATAATATGGAACTCCA-----TTACACTTAAAA---------------------------------TT---AAA----------GAGAAATT--CCTGAATTGG-G-TAAAA----TGCGAAAGTAGAATTTAA-AGAAATTG-----CC----------ATGA--AA-ATAAC-----AAATA----ACATTT---------ATTGtt
gi|12                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tAT-----------GTC------------------------AAACAGAT--------A-TT------------------TATAATACAAAA---ACGTAATAATGAA---------ACGTTTAAT-CGGAGATTGTCATATTCTGGAAC-AAA--ATATGGAACGCTA-----TTCGAATTAAAA------
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                caatacatttgaagtcaATA--CCTGAAATGG-A-CAAAA----TACGAAAGTTGAATTTGA-ATAAATTG-----TT----------ATGA--AA-AAAAT-----ATCTA----ACGTTT---------ATTGGT--A-T---------ATAC-T--------ATA---------TTTT----------AGTTTG--AT----GTTTttaaaaatatcgtttg
gi|15                         :                                                                                                                                                                                                                                                                                                                   aatgTATAT-CCAGAGTATGCTACAATTTATGATATTCAATTAGA-TAAGGCAAATCTCGAACGAAATATACAATGTGTATTAAAt
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        acagattACATCAAATA-TATCGTCTTGTTTGT----GGCTTTTATATCTGATACGGCCACATTTATCAAATGAACA
gi|2                          :                                                                                                                                                                                                                                                                                                                     TGTATATGC-AGATGATACTACACTTTATGATAGTCAATCAGACTAA------TTTCGAACGAAATTGAAAGTGTTTACTAAATTATCTTT-AAACTGATGTAAAGAGAACGGAAAGCAAATAAACAGCAACAAAACAAAAGTCATGTTCATAACAAGGCGAAAACATATAAGCATTGATAATTATTCACGTATGCTTA---AACATAGTAACATTCAGCAATCCTTC--ACAGCAGCTGATAAAATAATAGGTATAACTATCGACGACAA------------CATGCAATGA-------ATTTTA-A-TATGTATATAAA--A-AATTGTCTTGTACGT----GACTTGTATCAAGAAGATGGCCATATTTATAAATTGTACAC-------AGCTTATACTTTTATATTGCATACACATTATCTCATCTAAAAAACTGCAGTACAATAT-AGCTCATTCTTTTA-A--TAA-ACATGTAAACT-------CTGCAGAGAAGAGCAT------GTAGAGTTAT----TT-AAAAAAATCAACA------TGTTAGTCT--C-----------------CAACA-TA--------TTAGAACAAATTGT-T---------TTAAATAA-GAGCAAATGGCGAACACGATA
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ttttacata-GTCTCCAACATATTAGAACAAATTGTT----TTAAATAAGAGCAAATGGCGAA----------CACGATAC-----------ATCAATACACTTGAGATCAATGACAGAAAG---AA--------ACGT------------------TATAGTACCGAA---AACTAAAATTGAA---------ATGTCTAAG-GTGAGTTTCTCATATTATCTAATAAAA--TTATGGAA--------------A-TAAAAA------AATGG---------------CGTTTCTTTTTTAAACATATTCACAAATAAATTAACTT--ATTGG-G-TAAAA----TGCGATAGTAGAACTGAACAGAAATTG-----TCATAATCGTTAATTATTAA-ATGACTTTTGGAATATCACGTATTTCACAACTGAATTGAT--A-T---------TTCT-T--------TTTAATTTGATTTTTT----------AGTTTG-TAT----TTTTGTTA-----------TTT-TT---T-TGGTGTTTT--catcaatacacttgagatcaatgacagaaagaaacgttatagtaccgaaaactaaaattgaaatgtctaaggtgagtttctcatattatctaataaaattatggaaataaaaaaatggcgtttcttttttaaacatattcacaaataaattaacttattgggtaaaatgcgatagtagaactgaacagaaattgtcataatcgttaattattaaatgacttttggaatatcacgtatttcacaactgaattgatatttctttttaatttgattttttagtttgtatttttgttatttttttggtgtttt
gi|3                          : ttttacatatgtatatgcagatgatactacactttatgatagtcaatcagactaatttcgaacgaaattgaaagtgtttactaaattatctttaaactgatgtaaagagaacggaaagcaaataaacagcaacaaaacaaaagtcatgttcataacaaggcgaaaacatataagcattgataattattcacgtatgcttaaacatagtaacattcagcaatccttcacagcagctgataaaataataggtataactatcgacgacaacatgcaatgaattttaatatgtatataaaaaattgtcttgtacgtgacttgtatcaagaagatggccatatttataaattgtacacagcttatacttttatattgcatacacattatctcatctaaaaaactgcagtacaatatagctcattcttttaataaacatgtaaactctgcagagaagagcatgtagagttatttaaaaaaatcaacatgttaATGACTATCCACTTATGCTTACAAAA---GATAACATTGAGGTATC---GTAAAAACAGGCAATAAAGTATTATATATA------------AATGTCGACGACAACATGCACTGGAATACACACCTTCAG-TATGTATATATGTTA-T-----CTTGTTTATAAATGACCTTTATCTAGGACGCGGCCATGTTTATCAATTGAGTAC-------AG-------TTTTACAATAAATACATATCATCTGATCTAAATTATTGCTGTATTATGTAATGTGATTCTCCTATAGTTAATTCATATATAAATACAAAATTACAG---------C------GTAAAATTAT----GC-AAAACAATCAATA------TGTTTGTCTAAAAAGAAATCATTTCT---TAAAA-TATGTTGTCTTTTGAACCAGTTGT-AT--T-TT-ATTAAA-AATGTTACAGC-ATATACACGATAGTTAATGGA--AT-GTCTCTGGCATATTTAAACGGA---TTAAAATCAAATTAAAACAAATGACGAAATAGGTACATCAACAAACTTGGGGTCAATGTC------------------------AAA---ATTCTGTAAAACTT------------------TATAATACCGAA---ACCTTATTATAAA---------ATGTTTAAG-GGAAGTTTGTCATATTCTGTAGTATAA--ATATGATACGTCAAAACTTTGAAATTAAAA------ATTC----------------CATTTCTTT---AAACATATTCACAG-TACATT--CCTAAATCGGTGTTTAAA----TATGATAGTAGAATTTAA-ATAAATTG-----CCA------TTAATGA--AA-ATAAC-----AACTA----ACGTTT---------ATTGGT--A-A---------ATGT-T--------TAT---------TTTT----------AGTTTA-TTTTCTGGCTTGTTG-----------CAT-ACTAGT-T--TGT-------TTGTGT--------G-----ATAT----TATATTTATCAAGAA-ACATTC-TA-
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       aacaaagagacttaaactgaggtataatgaaagtgaGCTGTTCCATTTA-GGTCATTCGTTTATATTTGA-A-AT-TGAAGTTTAAAGGTTGCAGAGAAGAGCATTGCCATATAAAATGAT----AC-AAAATGATAAATC------TATTA--CTG-------------------------TAC--TATCTTTTGAACGAATTGTGTT--T-TCTATTAAA-AA-TGTAAAATTATGTAAAATATAGTAAATGGATTATAGTCGGTAAAATATTTAATTAAATTGTT----TCATATGAAAACAAAAGACAAG----------CAATATACTCCAAT-----GCC------------------------AAACGTAA--------ACTT------------------TATAAT--TAAAATGACATAAT-ATAAAAAAAAATTCATGTTTAAG-GGGAATTTGTCTTATGATATAAC-AAA--ACATGGAACGCTA-----TTCAACTTAAAA------ACTTGCAAACGTAAAAATGCCGTTTCTCT---AAACATATTCACAAATAAATT--TCCGAATTAG-T-TTAAA----TGC---AATCTAATTTAA-AGAAATTG-----TCA-------TAATGA--AA-ACAGC-----AACTA----GCTTGT---------ATTGAT--A-A------------T-T--------TTT---------Ttgcaattcgatacactt
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   A------------CATGTAATGGAACACACATTTTC-AATATATATATATATAAATATCCTCTTGTTTAT----GGCTTGTATCTAGGAAATGGTATTATTTATCAATT------------------------TCACAATG--TGCATATTGGCTCATCTATATAACTGCCTTGACATGTGGAGACATTCTTCTATAGTGAATTCATGTTAAGTTACAGAATCGCAGAGAAGAGCAT------GTAAAATTATAAAAAA-AAAAC-ATCAATA------TGTTTGTTTAGA-----------------AAAAACTGC--TGTA-TTTGAACAAACCGT-TTGCT-TTTATCAAA-AG-GACAAAAATATGCACACAATAGTAAGT-GA--GT-GTCCCCGATACGTTTAAACGAAACGCA----TCATGTTAGAACGATTGACGAG----------CAAGCTAC-----------ACC------------------------Aa
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            tgataaaatatcggccaaaatatcgacgacgTT------------------TATAATACCACA---ACCTAATA---------------TGTTTAAATGGGAGTTTGTTATATTCTGGAATATAA--ATATA-AAT---------TTCCACTTGAAATTACAAATTA----------------CATTTCTTT---AGATTTATTCACAGATAAATT--CCTAAATAAG-G-TAAA-----T-------TAG----TAA-ATAAATGT-----TTA------TGAATGA--AA-ATAAC-----AACTA----GCGTTT---------ATTGGT--A-A---------ATATATAATAACTATTC---------TTTT----------AGTTTG-TTG----CTTTGTTA-----------TTT-TTCAAC-T--GGTTTT---GTTGTATTAC--AT-AT----TTATTTTGTACATTTATTACGAATACAATT-TACGTT-ATATGATATAttacgctcgaggtcaat
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTACTATATAGGGTCATTCTTCTATATTTAATACATGTAAAATTACAAAGATGCAGAGAAGAGCAT------GTAGCATTAT----AT-AAAA-GACCAATA------TGTTTGTCTAGA-----------------TAACA-TA---TGTCATATGAACAAATTGT-TT--TATTTA--AAA-AA-TTTAAAACTTTGTACAAAATAGTTTATGGA--AT-GTCCCTTTCATATTTAAACGAATTGTT----TCAAATTAGTACAAATGGTGAG----------CAAAATAC-----------ATT------------------------AAA---AC--------ACTTGAGGTCAAACATAAACTCTATAATTCCGGA---ACATAATAATGAct
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TCTTT---TAACATGTTCACAAATAAATT--TATAAATAGA-G-TAAAATGACTGCGAAAGTAG----------AAATTG-----TC----------ATGA--AACACAAC-----CGCTT----ACGTAT---------ATTGTC--A-A---------ATG-----------AAT---------TTTTGGAGGGCCACAGATTG-TAT----AATTGTTAGGACGATATTCCTT-TTCTGTAT--TGTTTT--ca
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGT-A--------TTG---------TTTT----------A-TGTG-TTT----GTTTGTTG-----------TTT-TTCAGA-T--TGTTTT--TGTTATATTAC--AC---------ATTTTGTatgtgtttgtttgttgtttttcagattgtttttgttatattacacattttgt
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tcttttaacatgttcacaaataaatttataaatagagtaaaatgactgcgaaagtagaaattgtcatgaaacacaaccgcttacgtatattgtcaaatgaatttttggagggccacagattgtataattgttaggacgatattccttttcCGAAAGTAGAATTTTA-ATATATTGCTATTTAA------TTAATAA--AA-ATAAC-----AACTA----GCGTTT---------GTTGGTGAG-A---------AT-T-T--------TCT---------TTTT----------GATTTG----------TTGTTA-----------TTTGTTTA-T-T--TTTTTTGACAATGCATTAT--AC-AC----ACATTTTGTATATTTATCATGAATACACTT-TA-TTTAATATGATTTA

Unaligned ( gi|14 ): TATCAGGATATTGTATTGATGCAAATAACGAGCACTACGTATCAATACACTTGAGGTCAACGACAAACAGCAACTATATAATACAGTATCCTGATAACGAAATG