lowQualScore : 111
lowQualScore : 44 1 2 7 222 2 5 2
lowQualScore : .. . . . ... . . .
lowQualScore : 22 4 6 3 777 9 7 9
consensus : CAAACTGAAGCAGTCATGGTATT--TATACATCTATAATTACAAAATCATTTTATAA-TCG-TA-TCAAGAATCAAGCAAATTGTTTAAAGTTTCTTGCCTTAGCT
Reference ( gi|1 ) : CAAACTGAAGCAGTCATGGTATT--TATATATCTGTAATTACAAAATCATTTTACAA-TCA-TA-TCAAGAATCAAGCAAATTGTTTAAAGTTTCTTGCCTTAGCT
gi|4 : CAAACTGAAGCAGTCATGTTATT--TATACATCTATAATTACAGAATCATTT-ATAA-TCA-TA-TCAATAATCAATCAAATTGTTTAAAGTTTCTTGCCTTAGC
gi|2 : CAAACTGAAGCAGACATGGAATT--TATACATCTGTAATTACACAATCATTT-ATAA-TCA-TA-TCAAAAATCAATCAAATTGTTTGAAGTTTCTTGCCTTAGCT
gi|3 : CAAACTGAAGCTGTCATGGTATT--TATACATCTATAATAACAAAACCGTTT-ACAA-TCA-TA-TCAAGAATCAATCAAATCGTTTAAAGTTTCTTGCCTTAGt
gi|8 : tCAAACTGAAGCTGTCATGGTGTTAATACATAT-TG-AATTACAAAATC-TTTTATAA-TCG-TA-TCA-------AGCAAATTGTTTAAAGTTTCTTGTCTTAGCTt
gi|13 : CAAACTGAAGCAGTCATGGTATT--CATACATCTATAATTACAAAATCA-TTTATAA-GCA-TA-TCAAtt
gi|12 : CAAACTGAAGCAGTCATGTTATT--TATACATCTATAATTACAGAATCA-TTTATAA-TCA-TA-TCAA
gi|16 : tCAAACTGAAGCAGTCATGGTATT--TATACATCTATAATAACAAAATCATTT
gi|6 : CAAACTGAAGCAGTCTTTGTATT--TAAATATCTAGAATTACAAAACAATTTCA-AA-TCGTTT-TCAAGAGGAAAGTAAATAATGTAAAGTTTCTTG
gi|5 : AAACTGAATCAGTCGTGGTATT--TATATATCTATAATTACGATATCATTT-AAAA-TTA-TA-TCAAGAATCAAGCAAATTGTTTAAAGTTTCTCGCCTTAGCtat
gi|7 : AAACTGAAGCAGTCATGGTATT--TATACATCTGTAATTTAAAGATCA-TTTAAAA-TCA-TT-TCAAGAATCAGGC-----GTTTAAAATGTTTTGCCTTAGCT
gi|9 : tAAGCTAAAGCAATTATGGCATT--TAT-TAACTACAATTACAAAATCA-TTTAAAA-TCGTTT-TCAAGAAGCAAGTTAACTATCTAAAGTGCCTTa
gi|14 : AACTGAAACAGTCATGGTATT--TATACATCTATAATTACAAAATCA-TTTATAA-TTA-TA-TCA
gi|10 : ccTATT--TAAACATCTACAATTACAAAATCATTTCA-AA-TCT-CA-CCAAG-ATCAAGTAAATTGTTAAACATGTCTCGTCTT
gi|11 : atTATAATTACAAAATC-TCTTACAA-TCA-TA-TCAAGAGTCAAGCAAATTGTTTAAAGTTTCTTGCATTAGCT
gi|15 : tACTACAAAATCATTT--CAACTCG-TATTCAAAAAGCAGGTAGATTATTTAAAGTtt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TCAAGAAGCAAGTTGATTATCTGATCTTTCTTTTATTAA
Alignments
lowQualScore : 1
lowQualScore : 9 2 0 77 2
lowQualScore : . . . .. .
lowQualScore : 4 3 5 77 7
consensus : CAAACTGAAGCAGTCATGGTATTTATACATCTATAATTACAAAATCATTTTATAATCA-TA-TCAAGAATCAAGCAAATTGTTTAAAGTTTCTTGCCTTAGCT
Reference ( family-756 ) : CAAACTGAAGCAGTCATGGTATTTATACATCTATAATTACAAAATCATTTTATAATCG-TA-TCAAGAATCAAGCAAATTGTTTAAAGTTTCTTGCCTTAGCT
gi|1 : CAAACTGAAGCAGTCATGGTATTTATATATCTGTAATTACAAAATCATTTTACAATCA-TA-TCAAGAATCAAGCAAATTGTTTAAAGTTTCTTGCCTTAGCT
gi|10 : TATTTAAACATCTACAATTACAAAATCATTTCA-AATCT-CA-CCAAG-ATCAAGTAAATTGTTAAACATGTCTCGTCTT
gi|11 : atTATAATTACAAAATC-TCTTACAATCA-TA-TCAAGAGTCAAGCAAATTGTTTAAAGTTTCTTGCATTAGCT
gi|12 : tCAAACTGAAGCAGTCATGTTATTTATACATCTATAATTACAGAATCA-TTTATAATCA-TA-TCAAtt
gi|13 : tCAAACTGAAGCAGTCATGGTATTCATACATCTATAATTACAAAATCA-TTTATAAGCA-TA-TCAA
gi|14 : AACTGAAACAGTCATGGTATTTATACATCTATAATTACAAAATCA-TTTATAATTA-TA-TCA
gi|15 : ccTACA---ATTACTACAAAATCATTTCA-ACTCG-TATTCAAAAAGCAGGTAGATTATTTAAAGT
gi|16 : CAAACTGAAGCAGTCATGGTATTTATACATCTATAATAACAAAATCATTT
gi|2 : CAAACTGAAGCAGACATGGAATTTATACATCTGTAATTACACAATCATTT-ATAATCA-TA-TCAAAAATCAATCAAATTGTTTGAAGTTTCTTGCCTTAGCT
gi|3 : CAAACTGAAGCTGTCATGGTATTTATACATCTATAATAACAAAACCGTTT-ACAATCA-TA-TCAAGAATCAATCAAATCGTTTAAAGTTTCTTGCCTTAGt
gi|4 : tCAAACTGAAGCAGTCATGTTATTTATACATCTATAATTACAGAATCA-TTTATAATCA-TA-TCAATAATCAATCAAATTGTTTAAAGTTTCTTGCCTTAGCt
gi|5 : AAACTGAATCAGTCGTGGTATTTATATATCTATAATTACGATATCATTTAA-AATTA-TA-TCAAGAATCAAGCAAATTGTTTAAAGTTTCTCGCCTTAGC
gi|6 : CAAACTGAAGCAGTCTTTGTATTTAAATATCTAGAATTACAAAACAATTTCA-AATCGTTT-TCAAGAGGAAAGTAAATAATGTAAAGTTTCTTG
gi|7 : AAACTGAAGCAGTCATGGTATTTATACATCTGTAATTTAAAGATCA-TTTAAAATCA-TT-TCAAGAATCAGGC-----GTTTAAAATGTTTTGCCTTAGCTtat
gi|8 : tCAAACTGAAGCTGTCATGGTGTTAATACATATTGAATTACAAAATC-TTTTATAATCG-TA-TCA-------AGCAAATTGTTTAAAGTTTCTTGTCTTAGCTa
gi|9 : AAGCTAAAGCAATTATGGCATTTAT-TAACTACAATTACAAAATCA-TTTAAAATCGTTT-TCAAGAAGCAAGTTAACTATCTAAAGTGCCTTtt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TCAAGAAGCAAGTTGATTATCTGATCTTTCTTTTATTAA
Alignments
lowQualScore : 1
lowQualScore : 6 5 0 5 2
lowQualScore : . . . . .
lowQualScore : 3 5 5 3 7
consensus : CAAACTGAAGCAGTCATGGTATTTATACATCTATAATTACAAAATCATTTTATAATCA-TA-TCAAGAATCAAGCAAATTGTTTAAAGTTTCTTGCCTTAGCT
Reference ( family-756 ) : CAAACTGAAGCAGTCATGGTATTTATACATCTATAATTACAAAATCATTTTATAATCA-TA-TCAAGAATCAAGCAAATTGTTTAAAGTTTCTTGCCTTAGCT
gi|1 : CAAACTGAAGCAGTCATGGTATTTATATATCTGTAATTACAAAATCATTTTACAATCA-TA-TCAAGAATCAAGCAAATTGTTTAAAGTTTCTTGCCTTAGCT
gi|10 : TATTTAAACATCTACAATTACAAAATCATTTCA-AATCT-CA-CCAAG-ATCAAGTAAATTGTTAAACATGTCTCGTCTT
gi|11 : atTATAATTACAAAATC-TCTTACAATCA-TA-TCAAGAGTCAAGCAAATTGTTTAAAGTTTCTTGCATTAGCT
gi|12 : tCAAACTGAAGCAGTCATGTTATTTATACATCTATAATTACAGAATCA-TTTATAATCA-TA-TCAAtt
gi|13 : tCAAACTGAAGCAGTCATGGTATTCATACATCTATAATTACAAAATCA-TTTATAAGCA-TA-TCAA
gi|14 : AACTGAAACAGTCATGGTATTTATACATCTATAATTACAAAATCA-TTTATAATTA-TA-TCA
gi|15 : ccTACA---ATTACTACAAAATCATTTCA-ACTCG-TATTCAAAAAGCAGGTAGATTATTTAAAGT
gi|16 : CAAACTGAAGCAGTCATGGTATTTATACATCTATAATAACAAAATCATTT
gi|2 : CAAACTGAAGCAGACATGGAATTTATACATCTGTAATTACACAATCATTT-ATAATCA-TA-TCAAAAATCAATCAAATTGTTTGAAGTTTCTTGCCTTAGCT
gi|3 : CAAACTGAAGCTGTCATGGTATTTATACATCTATAATAACAAAACCGTTT-ACAATCA-TA-TCAAGAATCAATCAAATCGTTTAAAGTTTCTTGCCTTAGt
gi|4 : tCAAACTGAAGCAGTCATGTTATTTATACATCTATAATTACAGAATCATTT-ATAATCA-TA-TCAATAATCAATCAAATTGTTTAAAGTTTCTTGCCTTAGCt
gi|5 : AAACTGAATCAGTCGTGGTATTTATATATCTATAATTACGATATCATTTAA-AATTA-TA-TCAAGAATCAAGCAAATTGTTTAAAGTTTCTCGCCTTAGC
gi|6 : CAAACTGAAGCAGTCTTTGTATTTAAATATCTAGAATTACAAAACAATTTCA-AATCGTTT-TCAAGAGGAAAGTAAATAATGTAAAGTTTCTTG
gi|7 : AAACTGAAGCAGTCATGGTATTTATACATCTGTAATTTAAAGATCA-TTTAAAATCA-TT-TCAAGAATCAGGC-----GTTTAAAATGTTTTGCCTTAGCTtat
gi|8 : tCAAACTGAAGCTGTCATGGTGTTAATACATATTGAATTACAAAATC-TTTTATAATCG-TA-TCA-------AGCAAATTGTTTAAAGTTTCTTGTCTTAGCTa
gi|9 : AAGCTAAAGCAATTATGGCATTTAT-TAACTACAATTACAAAATCA-TTTAAAATCGTTT-TCAAGAAGCAAGTTAACTATCTAAAGTGCCTTtt
blockSeqs : T C C T T
blockSeqs : T T T T .
blockSeqs : T T T . .
blockSeqs : T T T . .
blockSeqs : T T T . .
blockSeqs : T C C . .
blockSeqs : T A T . .
blockSeqs : T C A . .
blockSeqs : T T T . .
blockSeqs : T T A . .
blockSeqs : . T . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqs : .
blockSeqCons :
originalCons : CAAACTGAAGCAGTCATGGTATTTATACATCTATAATTACAAAATCATTTTATAATCA-TA-TCAAGAATCAAGCAAATTGTTTAAAGTTTCTTGCCTTAGCT
finalCons : CAAACTGAAGCAGTCATGGTATTTATACATCTATAATTACAAAATCATTTTATAATCA-TA-TCAAGAATCAAGCAAATTGTTTAAAGTTTCTTGCCTTAGCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TCAAGAAGCAAGTTGATTATCTGATCTTTCTTTTATTAA
Alignments
lowQualScore : 1
lowQualScore : 6 5 0 5 2
lowQualScore : . . . . .
lowQualScore : 3 5 5 3 7
consensus : CAAACTGAAGCAGTCATGGTATTTATACATCTATAATTACAAAATCATTTTATAATCA-TA-TCAAGAATCAAGCAAATTGTTTAAAGTTTCTTGCCTTAGCT
Reference ( family-756 ) : CAAACTGAAGCAGTCATGGTATTTATACATCTATAATTACAAAATCATTTTATAATCA-TA-TCAAGAATCAAGCAAATTGTTTAAAGTTTCTTGCCTTAGCT
gi|1 : CAAACTGAAGCAGTCATGGTATTTATATATCTGTAATTACAAAATCATTTTACAATCA-TA-TCAAGAATCAAGCAAATTGTTTAAAGTTTCTTGCCTTAGCT
gi|10 : TATTTAAACATCTACAATTACAAAATCATTTCA-AATCT-CA-CCAAG-ATCAAGTAAATTGTTAAACATGTCTCGTCTT
gi|11 : atTATAATTACAAAATC-TCTTACAATCA-TA-TCAAGAGTCAAGCAAATTGTTTAAAGTTTCTTGCATTAGCT
gi|12 : tCAAACTGAAGCAGTCATGTTATTTATACATCTATAATTACAGAATCA-TTTATAATCA-TA-TCAAtt
gi|13 : tCAAACTGAAGCAGTCATGGTATTCATACATCTATAATTACAAAATCA-TTTATAAGCA-TA-TCAA
gi|14 : AACTGAAACAGTCATGGTATTTATACATCTATAATTACAAAATCA-TTTATAATTA-TA-TCA
gi|15 : ccTACA---ATTACTACAAAATCATTTCA-ACTCG-TATTCAAAAAGCAGGTAGATTATTTAAAGT
gi|16 : CAAACTGAAGCAGTCATGGTATTTATACATCTATAATAACAAAATCATTT
gi|2 : CAAACTGAAGCAGACATGGAATTTATACATCTGTAATTACACAATCATTT-ATAATCA-TA-TCAAAAATCAATCAAATTGTTTGAAGTTTCTTGCCTTAGCT
gi|3 : CAAACTGAAGCTGTCATGGTATTTATACATCTATAATAACAAAACCGTTT-ACAATCA-TA-TCAAGAATCAATCAAATCGTTTAAAGTTTCTTGCCTTAGt
gi|4 : tCAAACTGAAGCAGTCATGTTATTTATACATCTATAATTACAGAATCATTT-ATAATCA-TA-TCAATAATCAATCAAATTGTTTAAAGTTTCTTGCCTTAGCt
gi|5 : AAACTGAATCAGTCGTGGTATTTATATATCTATAATTACGATATCATTTAA-AATTA-TA-TCAAGAATCAAGCAAATTGTTTAAAGTTTCTCGCCTTAGC
gi|6 : CAAACTGAAGCAGTCTTTGTATTTAAATATCTAGAATTACAAAACAATTTCA-AATCGTTT-TCAAGAGGAAAGTAAATAATGTAAAGTTTCTTG
gi|7 : AAACTGAAGCAGTCATGGTATTTATACATCTGTAATTTAAAGATCA-TTTAAAATCA-TT-TCAAGAATCAGGC-----GTTTAAAATGTTTTGCCTTAGCTtat
gi|8 : tCAAACTGAAGCTGTCATGGTGTTAATACATATTGAATTACAAAATC-TTTTATAATCG-TA-TCA-------AGCAAATTGTTTAAAGTTTCTTGTCTTAGCTa
gi|9 : AAGCTAAAGCAATTATGGCATTTAT-TAACTACAATTACAAAATCA-TTTAAAATCGTTT-TCAAGAAGCAAGTTAACTATCTAAAGTGCCTTtt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TCAAGAAGCAAGTTGATTATCTGATCTTTCTTTTATTAA