lowQualScore : 1111111111111111111111 111111111111111111111111 222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111 111111111 11111
lowQualScore : 1 1 2222 22222 1 1 11 0000000000000000000000 11 111 22222 11 22 1 999999999999999999999999 111 11 1 111 2222222 111 11111 22 1 1111 1111111 111 11 11 3333 33 1 555555555555555555555555555555555555555555555 1 1 2222 222222222222222222222222222222222222222222222222222222 1 2222 77777 222 1111 1 1 44444444 11 1111111 1 1 222 2222 2 1 22 1 44444444 1 1 3333333 11 000000000 00000 1 1 11 33 1 1 44 1
lowQualScore : 6 5 4 7 6 2 6 9999 1 6 6 7 77777 3 9 0 8 8 3 77 8888888888888888888888 11 444 00000 11 6 1 11 0 444444444444444444444444 2 2 1 3 777 33 0 777 2 88 77 4 5 8888 0 4444444 444 5 000 88888 66 1 99 4 2 33 1 6 1 1 4 7 7777 77 0 0 5555555 1 555 33 88 5555 22 6 11 777777777777777777777777777777777777777777777 5 6 5 8 2222 22 777777777777777777777777777777777777777777777777777777 77 2 4 3 8888 22222 333 3 9999 3 6 2 8 6 0 77777777 7 6 7 1 6 7 22 6666666 3 3 77 2 888 2 0000 0 5 11 0 6 66666666 4 6 6 2 7 9 7 5 1111111 99 6 222222222 6 2 00000 5 6 4 2 6 7 2 4 6 2 6 99 4 6 00 6 5 5 66 7
lowQualScore : . . . . . . . .... . . . . ..... . . . . . . .. ...................... .. ... ..... .. . . .. . ........................ . . . . ... .. . ... . .. .. . . .... . ....... ... . ... ..... .. . .. . . .. . . . . . . .... .. . . ....... . ... .. .. .... .. . .. ............................................. . . . . .... .. ...................................................... .. . . . .... ..... ... . .... . . . . . . ........ . . . . . . .. ....... . . .. . ... . .... . . .. . . ........ . . . . . . . . ....... .. . ......... . . ..... . . . . . . . . . . . .. . . .. . . . .. .
lowQualScore : 0 0 0 7 0 0 7 3333 0 0 0 3 77777 2 4 8 0 0 5 55 0000000000000000000000 00 000 00000 00 0 4 88 0 888888888888888888888888 5 5 2 2 555 88 0 555 5 22 99 7 7 0000 7 6666666 999 7 000 00000 99 7 55 2 5 22 0 0 7 7 6 8 0000 44 8 6 8888888 4 000 88 33 7777 00 3 77 333333333333333333333333333333333333333333333 7 0 0 2 0000 88 000000000000000000000000000000000000000000000000000000 00 0 7 3 3333 77777 333 7 0000 3 7 0 3 0 7 77777777 3 0 3 0 0 3 00 0000000 3 7 33 0 555 5 5555 0 5 00 5 0 55555555 0 0 7 0 3 7 3 0 7777777 00 0 555555555 0 5 00000 0 0 0 5 0 0 5 0 0 5 0 00 0 0 00 0 0 0 00 0
consensus : GGTGTCAGAAGTTAAAGTNTATTTGGANTAAATGAATAATGATGTTCAATGAACT---ATTGTGTTTTAATTAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTAACACTC--A--TTTATCGTATGGGTAATGACGCGGACGAAATATTTAAT-TCATTT-AATTNAAGTGAGGAACAATAAAAAAAATA--------CAAAGAT--GTA---TGTGACAAA-----TTCA--AAAGTTACTTTGTGATATAAA-GAA------TA--TG-----ATA---TTTGAACGNGCNAAATTCAATATGAG---GTGC--CAG-G---ANGAG-GGCG--AGACTG-TAG--ATGCATTTGTGACAGCCCTACATTCTN----TGACGGAACATTG-CA---AC----NACGGCGCATTAAAAGACGAATTAATANGGGACAGAATAGTTGTTGGATTAAGAGATGCCAGCATTTCTGAGAAACTGCAGTTGGACGCCGAGTTAACACTCGAAAAGTCAA----TAAACACTGCAAGGCAAAA-AG---AGGCAGTTCG-AAA--ACAGCAATCAGTTGTCAGAAAT--CGTGCAATTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGACC-------------------GAGGTC-G-GC--GG--AG-------CACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATACGGAGCAGTATCTAAACACGCCAGAAGTACATGCC------------C------------AG-AGTG------CNGAGGG--------TGCGGCCGGATGGGTCACTGGGTNAAATG-CT----GTCA-----CCACGAAA---GTCGACGAAGTAGAGGATCGAGCCTTCT-TTTGAACGATAGGCTGTGACGAGAAAGCCTGGACAATTAATTTAAAGGTG--A-ACAATCGTTTATCAGATTCGAAATCGATACAGGGGCAGACGNAACTGNTATTTCTGAAAAT-GTNTATAAAACGCTNNGTTCACCGCCTTTAATTAAAAGCAAGAAAAACNNTTTTGGGCNAGGCAATAAACCATTGCAATGTCTTGGGTTNAATCACAGAAACTGTTTCTAGTGATAAATCATCAGCGGTCGAAGANATATATGTCGTGAAAAGCTTAGAACGATGTTTACTGGGCCGACCAGCTATTATAAAGCTTAACCTTATTGAGTTAAAATGCATAGAAGAGGTAATTTCGCTCGAAAACGTAAANTTGAGTCATCCCAAAGTTGTTTGGGNAAT-----TAGGCATGCTGGGCGGCGAATACCATATTTCAATCANTGACGNTGCTAAGCCATACGGNTTNACGGTTCNTCGACGCGNACCTNTCCCGTTACTCCCCAAGGTCAAAAATGAATTAGACAACATTGA-GAAAAATCATGAGATTTTTCGTG
Reference ( gi|1 ) : GATGGCAGAAGTTAAAGTATATTTGGATTAAACGAATCATGCTGTTCAATGAACC---ATTGTGTTTTAATTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATAACACTC--A--TTTATTGTATGGGTAATGATGCGGACGATATATTTAAT-TCATTT-AATTTAAGTGCGGAACAATAAAAAAAGTAGAT-CTA-CAAAGAT--GTA---TGTGACAAA-----TTCA--AAAGTTACTTTGTGATATAAA-GAATCGTCATACATGTCCATGTA---TTTGAACGGGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AGAATG-TCG--ATGCATTTGTGACAGCCCTACATTGTT----TGGCGGAACATTG-CA---AT----AACGGTACATTAAAAGACGAATTGATACGGGACATGATAGTTGTTGGATTAAAAGATGACAGCATTTCTGAGAAACTGCAGTTGGACGCCGAGTTGACATTCGAAAAGTCAA----TTAACACTGCAAGGCAAAA-AG---AAGCAGTTCG-AAA--ACAGCAATCAGTTGTCAGAAAT--CAT-TAGTTGAAAATACGATGGTATATGTAAAACAAACACAACGCAAGCC-------------------GAGGT---------------------CACCAGTGAATCCTAGAAATAGGTGCTCAAGATGCGGAGCAGTATCGGAACACGCCAGAAGTACATGCC------------C------------AA-AGTG------TTGAGGA--------TGCAGCCGGGTGGGTCACTGGGTTAAATG-CT----GTCAGAAAGCCACGAAA---GTTGACGAAGTAGAGGAGCGAGCCTTCT-TTGGAACCATTGGCTGTGATGAGAAAGCCTGGATAATCAATTTAAAAATG--AGACAATCATTTATCAGATTTAAAATTGATACAAGGGCAGATGTAACTGCTATTTTTGAAAAT-GTGTATAAAACACTGGGTTCACCACCTTTAATTAAAAGCAAAAAAAATCTTTTTGGGCCATGTTATAAACCATTGC-ATGTCTTGCATTCAATCACAGAAACTGTTTCCAGTGATAAACTATCAGCGGTCGAAGATATACATGTCGTCAAAAGCTTAGAACGATGTTTACTGGGCCGACCAGCTATTATAAAGTTTAACCTTATTGAGTTAAAAGGCATAGAAGAGGTAATTTTGCTTGTAAACGTAACATTAA-------C-AAGTTATTTGAGGAATTCTAGTAGGTATGTTGAGCGGCGAATACCATAGTTCAACCAATGACGGTGCTAAACCATTCAGGTTAATGGTTCCTCAACGCCTACCTATCCCATTACTCCGAAAAGTCAAACATGAATTAGACAACATGGATAAAAAATCATGTGATTTTTCGTG
gi|3 : GGTGTCAGAAGTTAAAGTATATTTGGATTAAATGAATAATGATGTTCAATGAACT---ATTGTGTTTTAATTAAATA
gi|8 : atGGTGTCAGAAGTTAAAGTTTATTTGGAATAAATGAATAATGCTGTTCAATGAACT---ATTGTGTTTTAATTAGATAaaacaaaataatatatatctaaaaatggcacaattccaagtaactcctcttgaaaatttcaattttaaaaggccggaagactttgacaaatggattttgagatttgaacgtttcaaagtggcatcggggcttagtgcgaaggaagaggaacagcaagtaaacactctcatttatcgtattggtaatgatgcggacgaaatatttaattcatttaattaaagtgaggaacaatcaaaaaaatacaaagatgtatgtgacaaattcaaaagttaatttgtgattaaaagaaacgtcatatttaaacgggccgaattcaatatgaagtgccaggaggagggcgagaatgtcaatgcatttgtgacagtcctacattccttggctgaacattgcaattacggtacattaaaaaacgaattaatacgggacagaatagttgttgaattaagagatgccagcatttctgagaaactgtagttggacgctgagttgatactcgaaaagtcaataaacgctgcaaggcaaacagtagcagttcgaaaacagcaatcagttgtcagaaaccatgcaattgaaaatacgatggactatgttaaacaaacacaacgcagaccgaggtcaacgtttgagcagaataagccaccagtgaagcctagaagtcggtgctcaagatgcggatcagtaccggaaaacaccagaagtacacgcccagcaacgcatttaaagtgcagagggtgcggccgggtgagtcattaag
gi|9 : ttgtatataaccaaatgcacggtgcatggtaacttgatacacaccatcttgcatgtatcccgagtatataaacctaggccgcactagtagcagggcttttattctgttgtagtttcaaataaacatacatgtatttacagtaactgacacTATTTGGAGTTAATGAATTATGATGCTCAATGTACTATAATTGTTTTTTAATTAGATAaaacaaaattatatata
gi|10 : TTAGTA-CTCTC--A--TTGATTGCATGGATAAAGATGCGGA--A-ATATTTGAT-TAATTT-AAaaaacaaagtatattaaaaaacggcacacttccaagtggatcctctagaaaaaacaaattcaatgttaaaaaactggaacactttgacaaatgtattgtgagatctgaacgtttcaaagtggcatcggaactaagtgaaaaggaagaggcacaataagttaacactatcatgtattgtattg
gi|5 : ttcaactgcaaaaaaaaaacaaagaaatgttaaaactgattttattttaccatgagttcctacaacttcgtctggaaaaaataattataagaaaccggaagactttgatgaattgtgagatttgaatattctatagtgccactgggactgagtcagaaggaagagggtcggcactTAATACCC--AAGTGTATTGTATGGGTAGTGGGACGGATGACAT-TCTGACATCATTTTCATT---GT-CAGAA--------------GATGCTAGTAAGGATTCGGACACTGTGACAGAAAGTCTTCATCAA---TATTTTGTGCCA-AAA-GA-------TA-------ATGTAATTTTTGAACGTTCAAAGTTCA--ATGAGCGAGTGCAGCTG-GCAAATGAA-GGCGTAAGCACATTCGTTACGTATTTGT-ACAG----A------T----TGGCGGGAAATTATCA---ATTCAGAATGCTTCAC-----GATGAACTCATAAGAGACAGAATTATCATGGGCTTAAGAGACAATAGACTTTAAGAAAAACTTCAGTTAGACGATGAGCTTACACTTGAAAA---AAGCTGTT-ACAC----AGGCAAGACAGCTAAAGCTGTC---AAGTCACAGCAGTCTGTTGT
gi|3 : tttgatttcagtaaaccagaaaactggtaaaatggttccagtgctttgatcggtttcggtcagcatctggtttgaaagagaagtgcaagtAACACTCTCA--TTTATCGTATTGGTAATGATGCGGACGAAATATTTAAT-TCATTT-AATTAAAGTGAGGAACAATCAAAAAAATA--------CAAAGAT--GTA---TGTGACAAA-----TTCA--AAAGTTAATTTGTGATTAAAA-GAAACGTCATA---------------TTTAAACGGGCCGAATTCAATATGAA---GTGC--CAG-G---AGGAG-GGCG--AGAATG-TCA--ATGCATTTGTGACAGTCCTACATTCCT----TGGCTGAACATTG-CA---AT----TACGGTACATTAAAAAACGAATTAATACGGGACAGAATAGTTGTTGAATTAAGAGATGCCAGCATTTCTGAGAAACTGTAGTTGGACGCTGAGTTGATACTCGAAAAGTCAA----TAAACGCTGCAAGGCAAAC-AG---TAGCAGTTCG-AAA--ACAGCAATCAGTTGTCAGAAAC--CATGCAATTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGACC-------------------GAGGTCAACGTTTGAGCAGAATAAGCCACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCGGATCAGTACCGGAAAACACCAGAAGTACACGCC------------CAGCAACGCATTTAA-AGTG------CAGAGGG--------TGCGGCCGGGTGAGTCATTtcgaggcaacaaacaggaagaaaacaaaatagacagtg
gi|2 : atggtgtcagaagttaaagtatatttggattaaatgaataatgatgttcaatgaactattgtgttttaattaaataaaacaaaataatatatatctaaaaatggcacaattccaagtaactcctcttgaaaatttcaattttaaaaggccggaagactttgacaaatggattttgagatttgaacgtttcaaagtggcatcggggcttagtgcgaaggaagaggaacagcaagtaTGAGTAATGATGCGGACGAAATATTTAAT-TCATTT-AATTTAATTGAGAAACAATAAAAAAAATA--------CAAAGAT--GTA---TGTGACAAA-----TTCA--AAAGTTACTTTGTGAT-TAAA-AAA-------A-ATGTC---ACA---TTTGAACGTGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AGAATG-TCG--ATGCATTTGTGACAGCCCTACATTCTT----TGACGGAATGCTG-CA---AT----TACGGTACATAAAAAGACGAATTAAAACGGGACAGAGTAGTTGTTGGATTAAGAGATGCCAGCATTTCTGAGAAACTGCAGTTGGACGCCGAATTAACACTCGAAAGGTCAA----TAAACACTGCAATGCAAAA-AG---AGGCAGTTCG-AAA--ACAGCAATTAGTTGTCAGAAAT--CATGCAATTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGACC-------------------GAGGTTTGAGCAGAGTAAGC------CACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCGGA-----------ACACACAAGAAGTACATGCCTAGCAACGCATTC------------AA-AGTG------CAGAGGG--------TACGGCCGGATGAGTCACTGGGTTAAATGTCT----GTCAG----CCACGAAA---GTTGACGAAGTACCGGATCGAGCCGTCTCTTGGAACTAGTGGCTGTGATGAGAAAGCCTGGACAATCAATTTAAAGGTG--AGACAATCGTTTATCAGATTCAAAATTTATACAGGGGCAGATGAAACTGCTATTTCTGAAAAT-GTGTATAAAACGGTTAGTT-ACCACCTTTAATTAAAAGCAAGAAAAACCTTTTTAGGCAAGGCAATAAACCATTGCAATG-CTTGGGTTAAATCACAAAAACTGTTTCTAGTGATAAATCATCAGCGGTCGAAGAAATATATGTCGTGAAAAGTTTAGAACGATTTTTACTGGGCCGATCAGCTATTGTAAAGATTAACCTTATTGAGTTAAAATGCATGGAAGAGGTAATTT----------CGTAAAATTGAGT-----CAAAGTTATTTGGGTAAT-----TAGGCATGCTGAGCGGCGAATACCATATTTCAATTATTGACGGTGCTAAGCCATACGGGTTTACGGTTCCTCGACGCGTACCTATCTCGTTACTCCCCAAGGTCAAAAATGAATTAGACAACATTGA-GAAAAATCATGAGATTTTTCGTGaag
gi|16 : tTGACAAGGACGAAATATTTAAT-TCATTT-AATTCAAGTTAGGAA-------AAAAGTA--------CAAAACT--GTA---TGTGACAAA-----TTCA--AAAGTTACATTGTGAGAT
gi|11 : ATAAGAAGAATA---------AAATAT--CTT---TGCGGCAAT-----TTCA--AATATTATTTTGTGAT-TAAATGAA-------ACTTG-----ATA---TTTGAATGGGCAATTTTCAATATGAG---TTGT--CAGAG---ATGATCGGAG--AGACTG-TAG--ATGTATTTGTGACAGCCCTACATTCTA----TGAGAGAACATTG-CA---AC----AATGGCGCATTAAAgtcagcatttctgggaactg
gi|4 : ac-GGAG--AGACTG-TAG--ATGCATTTGTGATAGCCCTACATTCTA----TGAGAGAACATTG-CA---AC----TATGGCACATTGAAC-ATGGATTGTTAAGATACAGTATAGTTATTGGTTTAAGAAGTGCCAGTATTTCAGAGAAATTGGGGTTGGATGATGAGTAAATAGTCGAAAAGTAGA----TAAACATTGCCGGGCAAAA-GG---TGGTTATTAGAAAA--ACAACAATCAGTTGTCCAAAATTACGT-T-GTTGAAAATACACTAGACTATGTCAAACAAAAACAGCAAAAGCTGATAGCAACATTTAAACAGGAAGT---------------------CAACAGTGAAACTTAGAAGTCGGTGCGCAAGATATGGAATAGTAT----------CAGAAGTACATGCC------------C------------AGCAGTGCA----TTGAAAG--------TG--ACTGGACGGGCCACTGTGTAAAGTA-CT----GTCTTTCGGCCACGAAC---GTCGATTAAGTAGA-----AAGATTTCT-TGTGAACAATAGGTTGTAATGAGGAAGCCTGGTCAATTAATTCAAAGGTGATACACAATAATTTATTAAATTCGAAATCGATACAGTGGCAG-CGT--CTGT----------AATAGTTTATATAACACTATGTTCGCTGCCTTTAAATAAAATCAA
gi|17 : tgcatttgtaacgagaacattgcaactatggtgcattaaacttG--AGACTG-TAG--ATGTATTTGTGACAGC----CATTATTTCTATGACAGAACATTG-CA---AC----TATGGCGCATTAAA
gi|18 : ga--AGACTG-TAT--ATGTATTTGTGACAGCCCTACATTCTA----TGAGAGAACATAG-CAAATAT----AGCGA---ATTAAA
gi|14 : GTTACATTGTGAGATGTCAGCATTTCTGGGAA-CTGCAGTTGGACGCCGTGCTAACACTCGAAAAGTCAA----TTAACACTTCAAGGCATAA-TA---AGGCA
gi|16 : GTTACATTGTGAGATGTCAGCATTTCTG-GGAACTGaacgatacggagcagtatctaaacacgtcagaagtacatgc
gi|6 : tgacaaggacgaaatatttaattcatttaattcaagttaggaaaaaagtacaaaactgtatgtgacaaattcaaaaGATACGGAGCAGTATCTAAACACGTCAGAAGTACATGC--------------------------AG-AGTAACGCACTCAAGGAACAGAAGGCGCAATCGGATGGGTTACTGGGTCAAATG-CTCTCTGTCA-------ACGAAAAACGTTGACAAAGTAGAGGATCGAGCCTTCC-TTTGAACGATAGGCTGTGACGAGAAAGCCTGAACAATTAATTTAAA-------------CA---ATCAGATTCAAA-TCGATACAGGGGCAGATGCAACTGATATTTCTGAAAAA-GTATATAAAACACTGGGTTTACCACCTTTAATTAAAAGCAAAAAAAA-AGTTTTGGGCCAGGTAATAAACCATTGC-ATGTCTTGGGTTTAATCATAGAAACTGTTTCTAGT-------CATCAGCGGTCGAAGATATATAAGTCGTCAATACCTTAGAACGATGTCTACTGGGACGACC----ATTATGAAGCTTAATCTTATTGAGCT-AAATGCAAAGAAGAGGTCATTCCGCTCGAAAACGTAA
gi|14 : acGATACGGAGCAGTATCTAAACACGTCAGAAGTACATGCaaatgagt
gi|7 : gttacattgtgagatgtcagcatttctgggaactgcagttggacgccgtgctaacactcgaaaagtcaattaacacttcaaggcataataaggcaaacATATATGTCGTGAAAAG-TTAAGACAATGTTTACTGGGCCGACCAGCTATTATAAAGCTTAACCTTATTGAGTTAAAATGCATAGAAGTGGTAGTTTCGCTTGAAAACGTAAATTTGAGTCATCCC-AAGTTGTTTGGGGAAT-----TAGGTATGTTGGGCGGCAAATACCATATTTCAATCAATGACGCTGTTAAGCCATACAGCTTAACGGTTCATCGACGTGAACCTTTCCTGTTACTCCCCAAGGTTAAA
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): ATTGTATATAACTAAATGCACTCAGGCTACATGGTAACATGATGCACACTGTCTTGCGTTATGCTGCTCTGGTCGCAGGGCTTTTATTCTGTTGTAGTCTCAAATAAACATACACATATTTACAGCCACTGACTTGTGATTTATTCAGAGCAATATATATAATGA
Unaligned ( gi|13 ): ACACACTATCTTGCATGTGTCCTGAGAACATAAGCCTATGCTGCACTGGTCGCAGGGCTTTTATTTTGTTGCAGTCTCAAATAAACATACACGTATTTACGGTAACTGACTTATTCAGAACATAATTATTTTATAAAGGCAATA
Unaligned ( gi|15 ): TATATATAACTATTAATGCACTCTACATGGTAACATGATACACACTATCTTGTATGTGTCCTGAGTATATCAACCTATGCCGCTCTGGTCGCAGGTTGTAGTCTCAAATAAACGTACACGTATTTACAGCAAC
Unaligned ( gi|19 ): ACATACAAATCATACTATTAAATGTTTTAGAAATAAA
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 111 11 11111 111111 11111 11 11 66666666666666666666 111 1111111111 2222 11 66666666666666666666666666666666 111 8888888888888888888888888888888888888888888888888 1 2222 555555555555 111 1 333 1 1 111 2 5555555 33333 2
lowQualScore : 1 1 3 3 777 33 88888 2 4 1 6 6 8 8 3 1 999999 1 2 66666 99 3 55 11 88888888888888888888 6 1 1 6 6 111 3333333333 1 0000 66 5 3 66 5 2 1 5 22 66 33 1 1 1 0 0 99 1 99 00 8 6 2 1 22222222222222222222222222222222 0 1 333 9999999999999999999999999999999999999999999999999 3 1 0 1111 777777777777 777 2 0 2 3 0 6 4 2 3 00 777 7777 0 55 0 4 4 1 2 22 6 2 0 444 1 0 3 7 1 7 1 2 6 3 0 3 6 4 3 1 2 6666666 0 1 33333 0 0 0 1 1 0 1 1 1 1 1 3 3 0 4
lowQualScore : . . . . ... .. ..... . . . . . . . . . ...... . . ..... .. . .. .. .................... . . . . . ... .......... . .... .. . . .. . . . . .. .. .. . . . . . .. . .. .. . . . . ................................ . . ... ................................................. . . . .... ............ ... . . . . . . . . . .. ... .... . .. . . . . . .. . . . ... . . . . . . . . . . . . . . . . . ....... . . ..... . . . . . . . . . . . . . . .
lowQualScore : 0 0 5 0 555 22 55555 0 8 0 7 7 8 0 2 8 222222 0 5 77777 22 5 22 00 44444444444444444444 7 0 0 7 7 777 5555555555 0 8888 99 0 0 99 0 8 1 0 11 99 88 8 0 7 1 3 22 0 22 33 0 0 5 2 88888888888888888888888888888888 2 0 555 8888888888888888888888888888888888888888888888888 2 0 0 2222 222222222222 555 0 2 5 0 0 5 0 0 2 55 555 0000 5 22 8 5 0 0 0 00 5 0 7 000 0 7 7 3 0 3 0 5 5 2 2 2 5 2 5 0 5 0000000 7 0 33333 7 7 7 0 0 7 0 0 0 0 0 0 0 0 0
consensus : GGTGTCAGAAGTTAAAGTATATTTGGANTAAATGAATNATGNTGTTCAATGAACT---ATTGTGTTTTAATTAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTAA-CACTC--A--TTTATTGTATGGGTAATGACGCGGACGAAATATTTAAT-TCATTT-AATTTAAGTGAGGA-ACGATAAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGATATAAA--GA--AT--------ATGTC---ATATTTG-AACGGGCNAAATT-CAA-TATGAG---GTGC--CAG-G---ANGAG----GGCG--AG-ACTGTCG--ATGCATTTGTGACAGCC-CTACATTCTNTGACGGAACATTG-CAACTACGG--CGCATTAAAAGACGAATTGATACGGGACAGAATAGTTGTTGGATTAAGAGATGCCAGCATTTCTGAGAAACTGCAGTTGGACGCCGAGTTAACACTCG--AAAAGTCGATAAACACTGCAAGGCAA--AAAGN-GGCAGTTCG-AAAACAGCAATCAGTTGTCAGAAATCATGCAGTTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGGCCGAGGTC--AAC---------G---GAGNAGG------CACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCGGAGCAGTATC-GAACACGCCAGAAGTACATGCC------------CAGC-----------AGTG--------------C--AGAGGGTGCGGCCGGATGGGTCACTGGGTTAAATG-CT----GTC-----AG----CCACGAAA---GTTGACGAAGTAGAGGATCGAGCCTTCTTTT-GAACNATNGGCTGTGATGAGAAAGCCTGGACAATCAATTTAAAGGTGAG--ACAATCGTTTATCAGATTCGAAATCGATACAGGGGCAGATGNAACTGCTATTTCTGAAAANGTGTATAAAACACTGGGTTCACCGCCTTTAATTAAAAGCAAAAAAAACCTTTTTGGGCCAGGTAATAAACCATTGC-ATGTCTTGGGTTNAATCACAGAAACTGTTTCTAGTGATAAATCATCAGCGGTCGAAGATATATATGTCGTNAAAAGCTTAGAACGATGTTTACTGGGCCGACCAGCTATTATAAAGCTTAACCTTATTGAGTTAAAATGCATAGAAGAGGTAATTTCGCTCGAAAACGTAAAATTGAGTC----C-AAGTTATTTGGGGAAT-----TAGGTATGTTGAGCGGCGAATACCATATTTCAATCAATGACGGTGCTAAGCCATACGGGTTAACGGTTCCTCGACGCGTACCTATCCCGTTACTCCCCAAGGTCAAANATGAATTAGACAACATNGATGAAAAATCATGNGATTTTTCGTG
Reference ( family-7414 ) : GGTGTCAGAAGTTAAAGTNTATTTGGANTAAATGAATAATGATGTTCAATGAACT---ATTGTGTTTTAATTAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTAA-CACTC--A--TTTATCGTATGGGTAATGACGCGGACGAAATATTTAAT-TCATTT-AATTNAAGTGAGGA-ACAATAAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGATATAAA--GA--AT--------ATG-----ATATTTG-AACGNGCNAAATT-CAA-TATGAG---GTGC--CAG-G---ANGAG----GGCG--AG-ACTGTAG--ATGCATTTGTGACAGCC-CTACATTCTNTGACGGAACATTG-CAACNACGG--CGCATTAAAAGACGAATTAATANGGGACAGAATAGTTGTTGGATTAAGAGATGCCAGCATTTCTGAGAAACTGCAGTTGGACGCCGAGTTAACACTCG--AAAAGTCAATAAACACTGCAAGGCAA--AAAGA-GGCAGTTCG-AAAACAGCAATCAGTTGTCAGAAATCGTGCAATTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGACCGAGGTC--GGC---------G---GAG----------CACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATACGGAGCAGTATCTAAACACGCCAGAAGTACATGCC------------CAG------------AGTG--------------C--NGAGGGTGCGGCCGGATGGGTCACTGGGTNAAATG-CT----GTC-----A-----CCACGAAA---GTCGACGAAGTAGAGGATCGAGCCTTCTTTT-GAACGATAGGCTGTGACGAGAAAGCCTGGACAATTAATTTAAAGGTGA---ACAATCGTTTATCAGATTCGAAATCGATACAGGGGCAGACGNAACTGNTATTTCTGAAAATGTNTATAAAACGCTNNGTTCACCGCCTTTAATTAAAAGCAAGAAAAACNNTTTTGGGCNAGGCAATAAACCATTGCAATGTCTTGGGTTNAATCACAGAAACTGTTTCTAGTGATAAATCATCAGCGGTCGAAGANATATATGTCGTGAAAAGCTTAGAACGATGTTTACTGGGCCGACCAGCTATTATAAAGCTTAACCTTATTGAGTTAAAATGCATAGAAGAGGTAATTTCGCTCGAAAACGTAAANTTGAGTCATCCCAAAGTTGTTTGGGNAAT-----TAGGCATGCTGGGCGGCGAATACCATATTTCAATCANTGACGNTGCTAAGCCATACGGNTTNACGGTTCNTCGACGCGNACCTNTCCCGTTACTCCCCAAGGTCAAAAATGAATTAGACAACATTGA-GAAAAATCATGAGATTTTTCGTG
gi|1 : GATGGCAGAAGTTAAAGTATATTTGGATTAAACGAATCATGCTGTTCAATGAACC---ATTGTGTTTTAATTAAACA
gi|1 : TTAATAA-CACTC--A--TTTATTGTATGGGTAATGATGCGGACGATATATTTAAT-TCATTT-AATTTAAGTGCGGA-ACAATAAAAAAAGTAGATCTACAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGATATAAA--GA--ATCGTCATACATGTCCATGTATTTG-AACGGGCCAAATT-CAA-TATGAG---GTGC--CAG-G---AGGAG----GGCG--AG-AATGTCG--ATGCATTTGTGACAGCC-CTACATTGTTTGGCGGAACATTG-CAATAACGG--TACATTAAAAGACGAATTGATACGGGACATGATAGTTGTTGGATTAAAAGATGACAGCATTTCTGAGAAACTGCAGTTGGACGCCGAGTTGACATTCG--AAAAGTCAATTAACACTGCAAGGCAA--AAAGA-AGCAGTTCG-AAAACAGCAATCAGTTGTCAGAAATCAT-TAGTTGAAAATACGATGGTATATGTAAAACAAACACAACGCAAGCCGAGGT--------------------------------CACCAGTGAATCCTAGAAATAGGTGCTCAAGATGCGGAGCAGTATCGGAACACGCCAGAAGTACATGCC------------CAA------------AGTG--------------T--TGAGGATGCAGCCGGGTGGGTCACTGGGTTAAATG-CT----GTC-----AGAAAGCCACGAAA---GTTGACGAAGTAGAGGAGCGAGCCTTCTTTG-GAACCATTGGCTGTGATGAGAAAGCCTGGATAATCAATTTAAAAATGAG--ACAATCATTTATCAGATTTAAAATTGATACAAGGGCAGATGTAACTGCTATTTTTGAAAATGTGTATAAAACACTGGGTTCACCACCTTTAATTAAAAGCAAAAAAAATCTTTTTGGGCCATGTTATAAACCATTGC-ATGTCTTGCATTCAATCACAGAAACTGTTTCCAGTGATAAACTATCAGCGGTCGAAGATATACATGTCGTCAAAAGCTTAGAACGATGTTTACTGGGCCGACCAGCTATTATAAAGTTTAACCTTATTGAGTTAAAAGGCATAGAAGAGGTAATTTTGCTTGTAAACGTAACATTAA--C------AAGTTATTTGAGGAATTCTAGTAGGTATGTTGAGCGGCGAATACCATAGTTCAACCAATGACGGTGCTAAACCATTCAGGTTAATGGTTCCTCAACGCCTACCTATCCCATTACTCCGAAAAGTCAAACATGAATTAGACAACATGGATAAAAAATCATGTGATTTTTCGTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaataacactcatttattgtatgggtaatgatgcggacgatatatttaattcatttaatttaagtgcggaacaataaaaaaagtagatctacaaagatgtatgtgacaaattcaaaagttactttgtgatataaagaatcgtcatacatgtccatgtatttgaacgggccaaattcaatatgaggtgccaggaggagggcgagaatgtcgatgcatttgtgacagccctacattgtttggcggaacattgcaataacggtacattaaaagacgaattgatacgggacatgatagttgttggattaaaagatgacagcatttctgagaaactgcagttggacgccgagttgacattcgaaaagtcaattaacactgcaaggcaaaaagaagcagttcgaaaacagcaatcagttgtcagaaatcattagttgaaaatacgatggtatatgtaaaacaaacacaacgcaagccgaggtcaccagtgaatcctagaaataggtgctcaagatgcggagcagtatcggaacacgccagaagtacatgcccaaagtgttgaggatgcagccgggtgggtcactgggttaaatgctgtcagaaagccacgaaagttgacgaagtagaggagcgagccttctttggaaccattggctgtgatgagaaagcctggataatcaatttaaaaatgagacaatcatttatcagatttaaaattgatacaagggcagatgtaactgctatttttgaaaatgtgtataaaacactgggttcaccacctttaattaaaagcaaaaaaaatctttttgggccatgttataaaccattgcatgtcttgcattcaatcacagaaactgtttccagtgataaactatcagcggtcgaagatatacatgtcgtcaaaagcttagaacgatgtttactgggccgaccagctattataaagtttaaccttattgagttaaaaggcatagaagaggtaattttgcttgtaaacgtaacattaacaagttatttgaggaattctagtaggtatgttgagcggcgaataccatagttcaaccaatgacggtgctaaaccattcaggttaatggttcctcaacgcctacctatcccattactccgaaaagtcaaacatgaattagacaacatggataaaaaatcatgtgatttttcgtg
gi|10 : gatggcagaagttaaagtatatttggattaaacgaatcatgctgttcaatgaaccattgtgttttaattaaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAGTA--CTCTC--A--TTGATTGCATGGATAAAGATGCGGA---AATATTTGAT-TAATTT-AA
gi|11 : ttcaactgcaaaaaaaaaacaaagaaatgttaaaactgattttattttaccatgagttcctacaacttcgtctggaaaaaataattataagaaaccggaagactttgatgaattgtgagatttgaatattctatagtgccactgggactgagtcagaaggaagagggtcggcactATAAGAAGAATA-------AAATATCTTTGCGGCAAT-----TTCA--AATATTATTTTGTGAT-TAAATGAA--AC--------TTG-----ATATTTG-AATGGGCAATTTT-CAA-TATGAG---TTGT--CAGAG---ATGATC---GGAG--AG-ACTGTAG--ATGTATTTGTGACAGCC-CTACATTCTATGAGAGAACATTG-CAACAATGG--CGCATTAAA
gi|14 : acGTTACATTGTGAGATGTCAGCATTTCTGGGAA-CTGCAGTTGGACGCCGTGCTAACACTCG--AAAAGTCAATTAACACTTCAAGGCAT--AATAA-GGCA
gi|14 : GATACGGAGCAGTATCTAAACACGTCAGAAGTACATGCaacgatacggagcagtatctaaacacgtcagaagtacatgc
gi|16 : gttacattgtgagatgtcagcatttctgggaactgcagttggacgccgtgctaacactcgaaaagtcaattaacacttcaaggcataataaggcaaacTGACAAGGACGAAATATTTAAT-TCATTT-AATTCAAGTTAGGA-A-------AAAAGTA------CAAAACTGTATGTGACAAA-----TTCA--AAAGTTACATTGTGAGAT
gi|16 : GTTACATTGTGAGATGTCAGCATTTCTG-GGAACTGgtcagcatttctgggaactg
gi|17 : tgacaaggacgaaatatttaattcatttaattcaagttaggaaaaaagtacaaaactgtatgtgacaaattcaaaaG--AG-ACTGTAG--ATGTATTTGTGACAGCCATTAT-TTCTATGACAGAACATTG-CAACTATGG--CGCATTAAA
gi|18 : ga--AG-ACTGTAT--ATGTATTTGTGACAGCC-CTACATTCTATGAGAGAACATAG-CAAATATAG--CGAATTAAA
gi|2 : TGAGTAATGATGCGGACGAAATATTTAAT-TCATTT-AATTTAATTGAGAA-ACAATAAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGAT-TAAA--AA--AA--------ATGTC---ACATTTG-AACGTGCCAAATT-CAA-TATGAG---GTGC--CAG-G---AGGAG----GGCG--AG-AATGTCG--ATGCATTTGTGACAGCC-CTACATTCTTTGACGGAATGCTG-CAATTACGG--TACATAAAAAGACGAATTAAAACGGGACAGAGTAGTTGTTGGATTAAGAGATGCCAGCATTTCTGAGAAACTGCAGTTGGACGCCGAATTAACACTCG--AAAGGTCAATAAACACTGCAATGCAA--AAAGA-GGCAGTTCG-AAAACAGCAATTAGTTGTCAGAAATCATGCAATTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGACCGAGGTTTGAGC---------A---GAGTAAGC-----CACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCGG-----------AACACACAAGAAGTACATGCCTAGCAACGCATTCAA------------AGTG--------------C--AGAGGGTACGGCCGGATGAGTCACTGGGTTAAATGTCT----GTC-----AG----CCACGAAA---GTTGACGAAGTACCGGATCGAGCCGTCTCTTGGAACTAGTGGCTGTGATGAGAAAGCCTGGACAATCAATTTAAAGGTGAG--ACAATCGTTTATCAGATTCAAAATTTATACAGGGGCAGATGAAACTGCTATTTCTGAAAATGTGTATAAAACGGTTAGTT-ACCACCTTTAATTAAAAGCAAGAAAAACCTTTTTAGGCAAGGCAATAAACCATTGCAATG-CTTGGGTTAAATCACAAAAACTGTTTCTAGTGATAAATCATCAGCGGTCGAAGAAATATATGTCGTGAAAAGTTTAGAACGATTTTTACTGGGCCGATCAGCTATTGTAAAGATTAACCTTATTGAGTTAAAATGCATGGAAGAGGTAATTT----------CGTAAAATTGAGT-----CAAAGTTATTTGGGTAAT-----TAGGCATGCTGAGCGGCGAATACCATATTTCAATTATTGACGGTGCTAAGCCATACGGGTTTACGGTTCCTCGACGCGTACCTATCTCGTTACTCCCCAAGGTCAAAAATGAATTAGACAACATTGA-GAAAAATCATGAGATTTTTCGTG
gi|3 : tGGTGTCAGAAGTTAAAGTATATTTGGATTAAATGAATAATGATGTTCAATGAACT---ATTGTGTTTTAATTAAATA
gi|3 : atAGTAAACACTCTCA--TTTATCGTATTGGTAATGATGCGGACGAAATATTTAAT-TCATTT-AATTAAAGTGAGGA-ACAATCAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTAATTTGTGATTAAAA--GA--A---------ACGTC---ATATTTA-AACGGGCCGAATT-CAA-TATGAA---GTGC--CAG-G---AGGAG----GGCG--AG-AATGTCA--ATGCATTTGTGACAGTC-CTACATTCCTTGGCTGAACATTG-CAATTACGG--TACATTAAAAAACGAATTAATACGGGACAGAATAGTTGTTGAATTAAGAGATGCCAGCATTTCTGAGAAACTGTAGTTGGACGCTGAGTTGATACTCG--AAAAGTCAATAAACGCTGCAAGGCAA--ACAGT-AGCAGTTCG-AAAACAGCAATCAGTTGTCAGAAACCATGCAATTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGACCGAGGTC--AAC---------GTTTGAGCAGAATAAGCCACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCGGATCAGTACCGGAAAACACCAGAAGTACACGCC------------CAGCAACGCATTTAAAGTG--------------C--AGAGGGTGCGGCCGGGTGAGTCATTaaacaaaataatatatatctaaaaatggcacaattccaagtaactcctcttgaaaatttcaattttaaaaggccggaagactttgacaaatggattttgagatttgaacgtttcaaagtggcatcggggcttagtgcgaaggaagaggaacagcaagtaaacactctcatttatcgtattggtaatgatgcggacgaaatatttaattcatttaattaaagtgaggaacaatcaaaaaaatacaaagatgtatgtgacaaattcaaaagttaatttgtgattaaaagaaacgtcatatttaaacgggccgaattcaatatgaagtgccaggaggagggcgagaatgtcaatgcatttgtgacagtcctacattccttggctgaacattgcaattacggtacattaaaaaacgaattaatacgggacagaatagttgttgaattaagagatgccagcatttctgagaaactgtagttggacgctgagttgatactcgaaaagtcaataaacgctgcaaggcaaacagtagcagttcgaaaacagcaatcagttgtcagaaaccatgcaattgaaaatacgatggactatgttaaacaaacacaacgcagaccgaggtcaacgtttgagcagaataagccaccagtgaagcctagaagtcggtgctcaagatgcggatcagtaccggaaaacaccagaagtacacgcccagcaacgcatttaaagtgcagagggtgcggccgggtgagtcattaag
gi|4 : atggtgtcagaagttaaagtatatttggattaaatgaataatgatgttcaatgaactattgtgttttaattaaataaaacaaaataatatatatctaaaaatggcacaattccaagtaactcctcttgaaaatttcaattttaaaaggccggaagactttgacaaatggattttgagatttgaacgtttcaaagtggcatcggggcttagtgcgaaggaagaggaacagcaATTTGTAACGAG-AACATTGCAACTATG-----GTGC----------ATTAAACTTGGAG--AG-ACTGTAG--ATGCATTTGTGATAGCC-CTACATTCTATGAGAGAACATTG-CAACTATGG--CACATTGAAC-ATGGATTGTTAAGATACAGTATAGTTATTGGTTTAAGAAGTGCCAGTATTTCAGAGAAATTGGGGTTGGATGATGAGTAAATAGTCG--AAAAGTAGATAAACATTGCCGGGCAA--AAGGT-GGTTATTAGAAAAACAACAATCAGTTGTCCAAAATTACGTTGTTGAAAATACACTAGACTATGTCAAACAAAAACAGCAAAAGCTGATAGC--AACATTTAAACAG---GAAGT--------CAACAGTGAAACTTAGAAGTCGGTGCGCAAGATATGGAATAGTAT----------CAGAAGTACATGCC------------CAGC-----------AGTG--------------CATTGAAAGT--GACTGGACGGGCCACTGTGTAAAGTA-CT----GTCTTTCGG-----CCACGAAC---GTCGATTAAGTAGA-----AAGATTTCTTGT-GAACAATAGGTTGTAATGAGGAAGCCTGGTCAATTAATTCAAAGGTGATACACAATAATTTATTAAATTCGAAATCGATACAGTGGCAG-CG-----------TCTGTAATAGTTTATATAACACTATGTTCGCTGCCTTTAAATAAAATCAAaag
gi|5 : tgcTAA-TACCC--AAGTGTATTGTATGGGTAGTGGGACGGATGACAT-TCTGACATCATTTTCATT---GTCAGAAGATGCTAGTAAGGATT------CGGACAC---TGTGACAGAAAGTCTTCATCAA---TATTTTGTGCCA-AAA--GATAAT--------GTA-----ATTTTTG-AACGTTCAAAGTT-CA---ATGAGCGAGTGCAGCTG-GCAAATGAA----GGCGTAAGCACATTCGTTACGTATTTGT-ACAG-------AT----TGGCGGGAAATTATCAATT-CAGAATGCTTC--ACGATGAACTCATAAGAGACAGAATTATCATGGGCTTAAGAGACAATAGACTTTAAGAAAAACTTCAGTTAGACGATGAGCTTACACTTGAAAAAAGCTGTTACACA-GGCAAGACAGCTAAAGCTGTCAAGTC-----ACAGCAGTCTGTTGT
gi|6 : tttgatttcagtaaaccagaaaactggtaaaatggttccagtgctttgatcggtttcggtcagcatctggtttgaaagagaagtgcaagtGATACGGAGCAGTATCTAAACACGTCAGAAGTACATGC--------------AG------------AGTAACGCACTCAAGGAAC--AGAAGGCGCAATCGGATGGGTTACTGGGTCAAATG-CTCTCTGTC-----A-------ACGAAAAACGTTGACAAAGTAGAGGATCGAGCCTTCCTTT-GAACGATAGGCTGTGACGAGAAAGCCTGAACAATTAATTTA------A---ACA-------ATCAGATTC-AAATCGATACAGGGGCAGATGCAACTGATATTTCTGAAAAAGTATATAAAACACTGGGTTTACCACCTTTAATTAAAAGCAAAAAAAA-AGTTTTGGGCCAGGTAATAAACCATTGC-ATGTCTTGGGTTTAATCATAGAAACTGTTTCTAG-------TCATCAGCGGTCGAAGATATATAAGTCGTCAATACCTTAGAACGATGTCTACTGGGACGACC----ATTATGAAGCTTAATCTTATTGAGCT-AAATGCAAAGAAGAGGTCATTCCGCTCGAAAACGTAAAAATGAGTtcgaggcaacaaacaggaagaaaacaaaatagacagtg
gi|7 : acATATATGTCGTGAAAAG-TTAAGACAATGTTTACTGGGCCGACCAGCTATTATAAAGCTTAACCTTATTGAGTTAAAATGCATAGAAGTGGTAGTTTCGCTTGAAAACGTAAATTTGAGTCATCCC-AAGTTGTTTGGGGAAT-----TAGGTATGTTGGGCGGCAAATACCATATTTCAATCAATGACGCTGTTAAGCCATACAGCTTAACGGTTCATCGACGTGAACCTTTCCTGTTACTCCCCAAGGTTAAA
gi|8 : GGTGTCAGAAGTTAAAGTTTATTTGGAATAAATGAATAATGCTGTTCAATGAACT---ATTGTGTTTTAATTAGATA
gi|9 : ttgtatataaccaaatgcacggtgcatggtaacttgatacacaccatcttgcatgtatcccgagtatataaacctaggccgcactagtagcagggcttttattctgttgtagtttcaaataaacatacatgtatttacagtaactgacacTATTTGGAGTTAATGAATTATGATGCTCAATGTACTATAATTGTTTTTTAATTAGATAaaacaaaattatatata
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATTGTATATAACTAAATGCACTCAGGCTACATGGTAACATGATGCACACTGTCTTGCGTTATGCTGCTCTGGTCGCAGGGCTTTTATTCTGTTGTAGTCTCAAATAAACATACACATATTTACAGCCACTGACTTGTGATTTATTCAGAGCAATATATATAATGA
Unaligned ( gi|13 ): ACACACTATCTTGCATGTGTCCTGAGAACATAAGCCTATGCTGCACTGGTCGCAGGGCTTTTATTTTGTTGCAGTCTCAAATAAACATACACGTATTTACGGTAACTGACTTATTCAGAACATAATTATTTTATAAAGGCAATA
Unaligned ( gi|15 ): TATATATAACTATTAATGCACTCTACATGGTAACATGATACACACTATCTTGTATGTGTCCTGAGTATATCAACCTATGCCGCTCTGGTCGCAGGTTGTAGTCTCAAATAAACGTACACGTATTTACAGCAAC
Unaligned ( gi|19 ): ACATACAAATCATACTATTAAATGTTTTAGAAATAAA
Alignments
lowQualScore : 1111111111111111111111
lowQualScore : 111 11 11111 111111 11111 11 555555555 111 111 11 111 0000000000000000000000 333 8888888888888888888888888888888 1 3333333333 1 111 1 1 222222 1 1 1 1 2222 33333 1
lowQualScore : 1 1 1 777 33 88888 4 1 6 6 9 8 77 1 999999 1 2 66666 99 3 55 8 000000000 444 1 0 444 11 8 444 1 6 66 5 2 66 5 1 2 4 4 66 77 6 3 1 2 99 1 0 0 99 0 1 99 77 8 2 1 6666666666666666666666 0 1 000 5555555555555555555555555555555 1 1 0 3333333333 0 777 0 0 2 0 1 1 333 2 000000 0 3 0 2 1 0 00 6 2 2 3 7 1 7 1 6 3 0 3 6 4 3 2 8888 33333 0 1 1 5 1
lowQualScore : . . . ... .. ..... . . . . . . .. . ...... . . ..... .. . .. . ......... ... . . ... .. . ... . . .. . . .. . . . . . .. .. . . . . .. . . . .. . . .. .. . . . ...................... . . ... ............................... . . . .......... . ... . . . . . . ... . ...... . . . . . . .. . . . . . . . . . . . . . . . . .... ..... . . . . .
lowQualScore : 0 0 0 555 22 55555 8 0 7 7 0 0 88 8 222222 0 5 77777 22 5 22 0 000000000 000 0 8 000 00 0 000 0 7 99 0 5 99 0 1 6 4 4 11 77 7 5 0 5 22 7 1 3 22 7 0 22 77 0 5 2 8888888888888888888888 2 0 333 8888888888888888888888888888888 4 2 0 8888888888 0 555 2 0 5 0 0 0 888 5 888888 5 2 8 5 0 2 55 5 0 0 3 3 0 3 0 5 2 2 2 5 2 5 5 3333 33333 7 0 0 5 0
consensus : GGTGTCAGAAGTTAAAGTATATTTGGANTAAATGAATNATGNTGTTCAATGAACT---ATTGTGTTTTAATTAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTAA-CACTC--A--TTTATTGTATGGGTAATGACGCGGACGAAATATTTAAT-TCATTT-AATTTAAGTGAGGA-ACGATAAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGATATAAA-GAAA--------ACGTC---ATATTTGAACGGGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AG-ACTGTCG--ATGCATTTGTGACAGCC-CTACATTCTNTGACG-GAACATTG-CAACTACGG--CGCATTAAAAG-ACGAA-TTGATACGGGACAGAAT--AGTTGTTGGATTAAGAGATGCCAGCATTTCTGAGAAACTGCAGTTGGACGCCGAGTTAACACTCG--AAAAGTCGATAAACACTGCAAGGCAA--AAAG-NGGCAGTTCGAAAA-CAGCAATCAGTTGTCAGAAATCATGCAGTTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGGCCGAGGTC--AACGTTTGAGCAGGA-G---CACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCGGAGCAGTATC-G-AACACGCCAGAAGTACATGCCCAGCAACGCATT-AAAGTG-----------CA--GAGGGTGCGGCCGGATGGGTCACTGGGTTAAATG-CTGTC----GG----CC-ACGAAA---GTTGACGAAGTAGAG-GATCGAGCCTTCTTTT-GAACNATNGGCTGTGATGAGAAAGCCTGGACAATCAATTTAAAGGTGAGACA--ATCGTTTATCAGATTCGAAATCGATACAGGGGCAGATGNAACTGCTATTTCTGAAAANGTGTATAAAACACTGGGTTCACCGCCTTTAATTAAAAGCAAAAAAAACCTTTTTGGGCCAGGTAATAAACCATTGC-ATGTCTTGGGTTNAATCACAGAAACTGTTTCTAGTGATAAATCATCAGCGGTCGAAGATATATATGTCGTNAAAAGCTTAGAACGATGTTTACTGGGCCGACCAGCTATTATAAAGCTTAACCTTATTGAGTTAAAATGCATAGAAGAGGTAATTTCGCTCGAAAACGTAAAATTGAGTC----CAAGTTATTTGGGGAAT-----TAGGTATGTTGAGCGGCGAATACCATATTTCAATCAATGACGGTGCTAAGCCATACGGGTTAACGGTTCCTCGACGCGTACCTATCCCGTTACTCCCCAAGGTCAAANATGAATTAGACAACATNGATGAAAAATCATGNGATTTTTCGTG
Reference ( family-7414 ) : GGTGTCAGAAGTTAAAGTATATTTGGANTAAATGAATNATGNTGTTCAATGAACT---ATTGTGTTTTAATTAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTAA-CACTC--A--TTTATTGTATGGGTAATGACGCGGACGAAATATTTAAT-TCATTT-AATTTAAGTGAGGA-ACGATAAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGATATAAA-GAAT--------ATGTC---ATATTTGAACGGGCNAAATTCAATATGAG---GTGC--CAG-G---ANGAG-GGCG--AG-ACTGTCG--ATGCATTTGTGACAGCC-CTACATTCTNTGACG-GAACATTG-CAACTACGG--CGCATTAAAAG-ACGAA-TTGATACGGGACAGAAT--AGTTGTTGGATTAAGAGATGCCAGCATTTCTGAGAAACTGCAGTTGGACGCCGAGTTAACACTCG--AAAAGTCGATAAACACTGCAAGGCAA--AAAG-NGGCAGTTCGAAAA-CAGCAATCAGTTGTCAGAAATCATGCAGTTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGGCCGAGGTC--AACG---GAGNAGG------CACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCGGAGCAGTATC-G-AACACGCCAGAAGTACATGCCCAGC-----------AGTG-----------CA--GAGGGTGCGGCCGGATGGGTCACTGGGTTAAATG-CTGTC----AG----CC-ACGAAA---GTTGACGAAGTAGAG-GATCGAGCCTTCTTTT-GAACNATNGGCTGTGATGAGAAAGCCTGGACAATCAATTTAAAGGTGAGACA--ATCGTTTATCAGATTCGAAATCGATACAGGGGCAGATGNAACTGCTATTTCTGAAAANGTGTATAAAACACTGGGTTCACCGCCTTTAATTAAAAGCAAAAAAAACCTTTTTGGGCCAGGTAATAAACCATTGC-ATGTCTTGGGTTNAATCACAGAAACTGTTTCTAGTGATAAATCATCAGCGGTCGAAGATATATATGTCGTNAAAAGCTTAGAACGATGTTTACTGGGCCGACCAGCTATTATAAAGCTTAACCTTATTGAGTTAAAATGCATAGAAGAGGTAATTTCGCTCGAAAACGTAAAATTGAGTC----CAAGTTATTTGGGGAAT-----TAGGTATGTTGAGCGGCGAATACCATATTTCAATCAATGACGGTGCTAAGCCATACGGGTTAACGGTTCCTCGACGCGTACCTATCCCGTTACTCCCCAAGGTCAAANATGAATTAGACAACATNGATGAAAAATCATGNGATTTTTCGTG
gi|1 : GATGGCAGAAGTTAAAGTATATTTGGATTAAACGAATCATGCTGTTCAATGAACC---ATTGTGTTTTAATTAAACA
gi|1 : TTAATAA-CACTC--A--TTTATTGTATGGGTAATGATGCGGACGATATATTTAAT-TCATTT-AATTTAAGTGCGGA-ACAATAAAAAAAGTAGATCTACAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGATATAAA-GAATCGTCATACATGTCCATGTATTTGAACGGGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AG-AATGTCG--ATGCATTTGTGACAGCC-CTACATTGTTTGGCG-GAACATTG-CAATAACGG--TACATTAAAAG-ACGAA-TTGATACGGGACATGAT--AGTTGTTGGATTAAAAGATGACAGCATTTCTGAGAAACTGCAGTTGGACGCCGAGTTGACATTCG--AAAAGTCAATTAACACTGCAAGGCAA--AAAG-AAGCAGTTCGAAAA-CAGCAATCAGTTGTCAGAAATCAT-TAGTTGAAAATACGATGGTATATGTAAAACAAACACAACGCAAGCCGAGGTC--A---------------------CCAGTGAATCCTAGAAATAGGTGCTCAAGATGCGGAGCAGTATC-GGAACACGCCAGAAGTACATGCCCAA------------AGTG-----------TT--GAGGATGCAGCCGGGTGGGTCACTGGGTTAAATG-CTGTC----AGAAAGCC-ACGAAA---GTTGACGAAGTAGAG-GAGCGAGCCTTCTTTG-GAACCATTGGCTGTGATGAGAAAGCCTGGATAATCAATTTAAAAATGAGACA--ATCATTTATCAGATTTAAAATTGATACAAGGGCAGATGTAACTGCTATTTTTGAAAATGTGTATAAAACACTGGGTTCACCACCTTTAATTAAAAGCAAAAAAAATCTTTTTGGGCCATGTTATAAACCATTGC-ATGTCTTGCATTCAATCACAGAAACTGTTTCCAGTGATAAACTATCAGCGGTCGAAGATATACATGTCGTCAAAAGCTTAGAACGATGTTTACTGGGCCGACCAGCTATTATAAAGTTTAACCTTATTGAGTTAAAAGGCATAGAAGAGGTAATTTTGCTTGTAAACGTAACATTAA-------CAAGTTATTTGAGGAATTCTAGTAGGTATGTTGAGCGGCGAATACCATAGTTCAACCAATGACGGTGCTAAACCATTCAGGTTAATGGTTCCTCAACGCCTACCTATCCCATTACTCCGAAAAGTCAAACATGAATTAGACAACATGGATAAAAAATCATGTGATTTTTCGTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaataacactcatttattgtatgggtaatgatgcggacgatatatttaattcatttaatttaagtgcggaacaataaaaaaagtagatctacaaagatgtatgtgacaaattcaaaagttactttgtgatataaagaatcgtcatacatgtccatgtatttgaacgggccaaattcaatatgaggtgccaggaggagggcgagaatgtcgatgcatttgtgacagccctacattgtttggcggaacattgcaataacggtacattaaaagacgaattgatacgggacatgatagttgttggattaaaagatgacagcatttctgagaaactgcagttggacgccgagttgacattcgaaaagtcaattaacactgcaaggcaaaaagaagcagttcgaaaacagcaatcagttgtcagaaatcattagttgaaaatacgatggtatatgtaaaacaaacacaacgcaagccgaggtcaccagtgaatcctagaaataggtgctcaagatgcggagcagtatcggaacacgccagaagtacatgcccaaagtgttgaggatgcagccgggtgggtcactgggttaaatgctgtcagaaagccacgaaagttgacgaagtagaggagcgagccttctttggaaccattggctgtgatgagaaagcctggataatcaatttaaaaatgagacaatcatttatcagatttaaaattgatacaagggcagatgtaactgctatttttgaaaatgtgtataaaacactgggttcaccacctttaattaaaagcaaaaaaaatctttttgggccatgttataaaccattgcatgtcttgcattcaatcacagaaactgtttccagtgataaactatcagcggtcgaagatatacatgtcgtcaaaagcttagaacgatgtttactgggccgaccagctattataaagtttaaccttattgagttaaaaggcatagaagaggtaattttgcttgtaaacgtaacattaacaagttatttgaggaattctagtaggtatgttgagcggcgaataccatagttcaaccaatgacggtgctaaaccattcaggttaatggttcctcaacgcctacctatcccattactccgaaaagtcaaacatgaattagacaacatggataaaaaatcatgtgatttttcgtg
gi|10 : gatggcagaagttaaagtatatttggattaaacgaatcatgctgttcaatgaaccattgtgttttaattaaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAGTA--CTCTC--A--TTGATTGCATGGATAAAGATGCGGA---AATATTTGAT-TAATTT-AA
gi|11 : ttcaactgcaaaaaaaaaacaaagaaatgttaaaactgattttattttaccatgagttcctacaacttcgtctggaaaaaataattataagaaaccggaagactttgatgaattgtgagatttgaatattctatagtgccactgggactgagtcagaaggaagagggtcggcactATAAGAAGAATA-------AAATATCTTTGCGGCAAT-----TTCA--AATATTATTTTGTGAT-TAAATGAA---------ACTTG---ATATTTGAATGGGCAATTTTCAATATGAG---TTGT--CAGAG---ATGATCGGAG--AG-ACTGTAG--ATGTATTTGTGACAGCC-CTACATTCTATGAGA-GAACATTG-CAACAATGG--CGCATTAAA
gi|14 : acGTTACATTGTGAGATGTCAGCATTTCTGGGAA-CTGCAGTTGGACGCCGTGCTAACACTCG--AAAAGTCAATTAACACTTCAAGGCAT--AATA-AGGCA
gi|14 : GATACGGAGCAGTATCTA-AACACGTCAGAAGTACATGCaacgatacggagcagtatctaaacacgtcagaagtacatgc
gi|16 : gttacattgtgagatgtcagcatttctgggaactgcagttggacgccgtgctaacactcgaaaagtcaattaacacttcaaggcataataaggcaaacTGACAAGGACGAAATATTTAAT-TCATTT-AATTCAAGTTAGGA-A-------AAAAGTA------CAAAACTGTATGTGACAAA-----TTCA--AAAGTTACATTGTGAGAT
gi|16 : AAAAGTACAAAACTG-TATGTGACA-AATTCAAAAGTTACATTGTGAGATGTCAGCATTTCTG-GGAACTGgtcagcatttctgggaactg
gi|17 : tgacaaggacgaaatatttaattcatttaattcaagttaggaaG--AG-ACTGTAG--ATGTATTTGTGACAGCCATTAT-TTCTATGACA-GAACATTG-CAACTATGG--CGCATTAAA
gi|18 : ga--AG-ACTGTAT--ATGTATTTGTGACAGCC-CTACATTCTATGAGA-GAACATAG-CAAATATAG--CGAATTAAA
gi|2 : TGAGTAATGATGCGGACGAAATATTTAAT-TCATTT-AATTTAATTGAGAA-ACAATAAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGAT-TAAA-AAAA--------ATGTC---ACATTTGAACGTGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AG-AATGTCG--ATGCATTTGTGACAGCC-CTACATTCTTTGACG-GAATGCTG-CAATTACGG--TACATAAAAAG-ACGAA-TTAAAACGGGACAGAGT--AGTTGTTGGATTAAGAGATGCCAGCATTTCTGAGAAACTGCAGTTGGACGCCGAATTAACACTCG--AAAGGTCAATAAACACTGCAATGCAA--AAAG-AGGCAGTTCGAAAA-CAGCAATTAGTTGTCAGAAATCATGCAATTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGACCGAGGTTTGAGCA---GAGTAAGC-----CACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCG-----------G-AACACACAAGAAGTACATGCCTAGCAACGCATTCAAAGTG-----------CA--GAGGGTACGGCCGGATGAGTCACTGGGTTAAATGTCTGTC----AG----CC-ACGAAA---GTTGACGAAGTACCG-GATCGAGCCGTCTCTTGGAACTAGTGGCTGTGATGAGAAAGCCTGGACAATCAATTTAAAGGTGAGACA--ATCGTTTATCAGATTCAAAATTTATACAGGGGCAGATGAAACTGCTATTTCTGAAAATGTGTATAAAACGGTTAGTT-ACCACCTTTAATTAAAAGCAAGAAAAACCTTTTTAGGCAAGGCAATAAACCATTGCAATG-CTTGGGTTAAATCACAAAAACTGTTTCTAGTGATAAATCATCAGCGGTCGAAGAAATATATGTCGTGAAAAGTTTAGAACGATTTTTACTGGGCCGATCAGCTATTGTAAAGATTAACCTTATTGAGTTAAAATGCATGGAAGAGGTAATTT----------CGTAAAATTGAGTC----AAAGTTATTTGGGTAAT-----TAGGCATGCTGAGCGGCGAATACCATATTTCAATTATTGACGGTGCTAAGCCATACGGGTTTACGGTTCCTCGACGCGTACCTATCTCGTTACTCCCCAAGGTCAAAAATGAATTAGACAACATTGA-GAAAAATCATGAGATTTTTCGTG
gi|3 : tGGTGTCAGAAGTTAAAGTATATTTGGATTAAATGAATAATGATGTTCAATGAACT---ATTGTGTTTTAATTAAATA
gi|3 : atAGTAAACACTCTCA--TTTATCGTATTGGTAATGATGCGGACGAAATATTTAAT-TCATTT-AATTAAAGTGAGGA-ACAATCAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTAATTTGTGATTAAAA-GAA---------ACGTC---ATATTTAAACGGGCCGAATTCAATATGAA---GTGC--CAG-G---AGGAG-GGCG--AG-AATGTCA--ATGCATTTGTGACAGTC-CTACATTCCTTGGCT-GAACATTG-CAATTACGG--TACATTAAAAA-ACGAA-TTAATACGGGACAGAAT--AGTTGTTGAATTAAGAGATGCCAGCATTTCTGAGAAACTGTAGTTGGACGCTGAGTTGATACTCG--AAAAGTCAATAAACGCTGCAAGGCAA--ACAG-TAGCAGTTCGAAAA-CAGCAATCAGTTGTCAGAAACCATGCAATTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGACCGAGGTC--AACGTTTGAGCAGAATAAGCCACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCGGATCAGTACCGG-AAAACACCAGAAGTACACGCCCAGCAACGCATTTAAAGTG-----------CA--GAGGGTGCGGCCGGGTGAGTCATTaaacaaaataatatatatctaaaaatggcacaattccaagtaactcctcttgaaaatttcaattttaaaaggccggaagactttgacaaatggattttgagatttgaacgtttcaaagtggcatcggggcttagtgcgaaggaagaggaacagcaagtaaacactctcatttatcgtattggtaatgatgcggacgaaatatttaattcatttaattaaagtgaggaacaatcaaaaaaatacaaagatgtatgtgacaaattcaaaagttaatttgtgattaaaagaaacgtcatatttaaacgggccgaattcaatatgaagtgccaggaggagggcgagaatgtcaatgcatttgtgacagtcctacattccttggctgaacattgcaattacggtacattaaaaaacgaattaatacgggacagaatagttgttgaattaagagatgccagcatttctgagaaactgtagttggacgctgagttgatactcgaaaagtcaataaacgctgcaaggcaaacagtagcagttcgaaaacagcaatcagttgtcagaaaccatgcaattgaaaatacgatggactatgttaaacaaacacaacgcagaccgaggtcaacgtttgagcagaataagccaccagtgaagcctagaagtcggtgctcaagatgcggatcagtaccggaaaacaccagaagtacacgcccagcaacgcatttaaagtgcagagggtgcggccgggtgagtcattaag
gi|4 : atggtgtcagaagttaaagtatatttggattaaatgaataatgatgttcaatgaactattgtgttttaattaaataaaacaaaataatatatatctaaaaatggcacaattccaagtaactcctcttgaaaatttcaattttaaaaggccggaagactttgacaaatggattttgagatttgaacgtttcaaagtggcatcggggcttagtgcgaaggaagaggaacagcaTGCATT-TGTAACGAGAACATTG-CAACTATGG--TGCATTAAAaag
gi|4 : -GGAG--AG-ACTGTAG--ATGCATTTGTGATAGCC-CTACATTCTATGAGA-GAACATTG-CAACTATGG--CACATTGAAC--ATGGA-TTGTTAAGATACAGTAT--AGTTATTGGTTTAAGAAGTGCCAGTATTTCAGAGAAATTGGGGTTGGATGATGAGTAAATAGTCG--AAAAGTAGATAAACATTGCCGGGCAA--AAGG-TGGTTATTAGAAAAACAACAATCAGTTGTCCAAAATTACGTTGTTGAAAATACACTAGACTATGTCAAACAAAAACAGCAAAAGCTGATAGC--AACATTTAAACAGGAAGT--CAACAGTGAAACTTAGAAGTCGGTGCGCAAGATATGGAATAGTATC-----------AGAAGTACATGCCCAGC-----------AGTG-----------CATTGAAAGTG--ACTGGACGGGCCACTGTGTAAAGTA-CTGTCTTTCGG----CC-ACGAAC---GTCGATTAAGTAGAAAGAT------TTCTTGT-GAACAATAGGTTGTAATGAGGAAGCCTGGTCAATTAATTCAAAGGTGATACACAATAATTTATTAAATTCGAAATCGATACAGTGGCAG-CG-----------TCTGTAATAGTTTATATAACACTATGTTCGCTGCCTTTAAATAAAATCAActtggagagactgtagatgcatttgtgatagccctacattctatgagagaacattgcaactatggcacattgaacatggattgttaagatacagtatagttattggtttaagaagtgccagtatttcagagaaattggggttggatgatgagtaaatagtcgaaaagtagataaacattgccgggcaaaaggtggttattagaaaaacaacaatcagttgtccaaaattacgttgttgaaaatacactagactatgtcaaacaaaaacagcaaaagctgatagcaacatttaaacaggaagtcaacagtgaaacttagaagtcggtgcgcaagatatggaatagtatcagaagtacatgcccagcagtgcattgaaagtgactggacgggccactgtgtaaagtactgtctttcggccacgaacgtcgattaagtagaaagatttcttgtgaacaataggttgtaatgaggaagcctggtcaattaattcaaaggtgatacacaataatttattaaattcgaaatcgatacagtggcagcgtctgtaatagtttatataacactatgttcgctgcctttaaataaaatcaa
gi|5 : tgcatttgtaacgagaacattgcaactatggtgcattaaacttTAA-TACCC--AAGTGTATTGTATGGGTAGTGGGACGGATGACAT-TCTGACATCATTTTCATT---GTCAGAAGATGCTAGTAAGGATT------CGGACAC---TGTGACAGAAAGTCTTCATCAA---TATTTTGTGCCA-AAA-GATA--------ATGTA---ATTTTTGAACGTTCAAAGTTCA--ATGAGCGAGTGCAGCTG-GCAAATGAA-GGCGTAAGCACATTCGTTACGTATTTGT-ACAG-------AT----TGGCG-GGAAATTATCAATT-CAGAATGCTTC--ACG-ATGAA-CTCATAAGAGACAGAAT--TATCATGGGCTTAAGAGACAATAGACTTTAAGAAAAACTTCAGTTAGACGATGAGCTTACACTTGAAAAAAGCTGTTACACA-GGCAAGACAGCTAAAGCTGTCAAGTC----A-CAGCAGTCTGTTGT
gi|6 : tttgatttcagtaaaccagaaaactggtaaaatggttccagtgctttgatcggtttcggtcagcatctggtttgaaagagaagtgcaagtGATACGGAGCAGTATCTA-AACACGTCAGAAGTACATGCAGAGT-----------AACGCACTCAAGGAACA--GAAGGCGCAATCGGATGGGTTACTGGGTCAAATG-CTCTC----TG----TCAACGAAAAACGTTGACAAAGTAGAG-GATCGAGCCTTCCTTT-GAACGATAGGCTGTGACGAGAAAGCCTGAACAATTAATTTAA-------ACA---------ATCAGATTC-AAATCGATACAGGGGCAGATGCAACTGATATTTCTGAAAAAGTATATAAAACACTGGGTTTACCACCTTTAATTAAAAGCAAAAAAAA-AGTTTTGGGCCAGGTAATAAACCATTGC-ATGTCTTGGGTTTAATCATAGAAACTGTTTCTAG-------TCATCAGCGGTCGAAGATATATAAGTCGTCAATACCTTAGAACGATGTCTACTGGGACGACC----ATTATGAAGCTTAATCTTATTGAGCT-AAATGCAAAGAAGAGGTCATTCCGCTCGAAAACGTAAAAATGAGTtcgaggcaacaaacaggaagaaaacaaaatagacagtg
gi|7 : acATATATGTCGTGAAAAG-TTAAGACAATGTTTACTGGGCCGACCAGCTATTATAAAGCTTAACCTTATTGAGTTAAAATGCATAGAAGTGGTAGTTTCGCTTGAAAACGTAAATTTGAGTCATCCCAAGTTGTTTGGGGAAT-----TAGGTATGTTGGGCGGCAAATACCATATTTCAATCAATGACGCTGTTAAGCCATACAGCTTAACGGTTCATCGACGTGAACCTTTCCTGTTACTCCCCAAGGTTAAA
gi|8 : GGTGTCAGAAGTTAAAGTTTATTTGGAATAAATGAATAATGCTGTTCAATGAACT---ATTGTGTTTTAATTAGATA
gi|9 : ttgtatataaccaaatgcacggtgcatggtaacttgatacacaccatcttgcatgtatcccgagtatataaacctaggccgcactagtagcagggcttttattctgttgtagtttcaaataaacatacatgtatttacagtaactgacacTATTTGGAGTTAATGAATTATGATGCTCAATGTACTATAATTGTTTTTTAATTAGATAaaacaaaattatatata
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATTGTATATAACTAAATGCACTCAGGCTACATGGTAACATGATGCACACTGTCTTGCGTTATGCTGCTCTGGTCGCAGGGCTTTTATTCTGTTGTAGTCTCAAATAAACATACACATATTTACAGCCACTGACTTGTGATTTATTCAGAGCAATATATATAATGA
Unaligned ( gi|13 ): ACACACTATCTTGCATGTGTCCTGAGAACATAAGCCTATGCTGCACTGGTCGCAGGGCTTTTATTTTGTTGCAGTCTCAAATAAACATACACGTATTTACGGTAACTGACTTATTCAGAACATAATTATTTTATAAAGGCAATA
Unaligned ( gi|15 ): TATATATAACTATTAATGCACTCTACATGGTAACATGATACACACTATCTTGTATGTGTCCTGAGTATATCAACCTATGCCGCTCTGGTCGCAGGTTGTAGTCTCAAATAAACGTACACGTATTTACAGCAAC
Unaligned ( gi|19 ): ACATACAAATCATACTATTAAATGTTTTAGAAATAAA
Alignments
lowQualScore : 111 11 11111 111111 11111 1 444444444444 111 11 111 1111111 77777777 333 2222 1 3333333333 1 111 1 1 11 1 1 1 1 2222 33333 1
lowQualScore : 1 1 1 777 33 88888 4 1 6 6 9 8 77 1 999999 1 2 66666 99 3 5 1 0 111111111111 0 444 11 8 444 6 66 5 2 66 5 1 2 4 4 66 77 6 3 1 2 99 1 0 0 99 0 1 99 77 8 2 1 4444444 0 0 00000000 0 1 000 6666 44 1 1 0 6666666666 0 777 0 0 2 0 1 1 333 33 2 7777 0 3 0 2 1 0 00 6 2 2 3 7 1 7 1 6 3 0 3 6 4 3 2 8888 33333 0 1 1 5 1
lowQualScore : . . . ... .. ..... . . . . . . .. . ...... . . ..... .. . . . . ............ . ... .. . ... . .. . . .. . . . . . .. .. . . . . .. . . . .. . . .. .. . . . ....... . . ........ . . ... .... .. . . . .......... . ... . . . . . . ... .. . .... . . . . . . .. . . . . . . . . . . . . . . . . .... ..... . . . . .
lowQualScore : 0 0 0 555 22 55555 8 0 7 7 0 0 88 8 222222 0 5 77777 22 5 5 4 8 000000000000 8 000 00 0 000 7 99 0 5 99 0 1 6 4 4 11 77 7 5 0 5 22 7 1 3 22 7 0 22 77 0 5 2 8888888 2 2 22222222 2 0 333 6666 22 4 2 0 8888888888 0 555 2 0 5 0 0 0 888 88 5 0000 5 2 8 5 0 2 55 5 0 0 3 3 0 3 0 5 2 2 2 5 2 5 5 3333 33333 7 0 0 5 0
consensus : GGTGTCAGAAGTTAAAGTATATTTGGANTAAATGAATNATGNTGTTCAATGAACT---ATTGTGTTTTAATTAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTAA-CACTC--A--TTTATTGTATGGGTAATGACGCGGACGAAATATTTAAT-TCATTT-AATTTAAGTGAGGA-ACGATAAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGATATAAAGAAAACGTCATA------------TTTGAACGGGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AG-ACTGTCG--ATGCATTTGTGACAGCC-CTACATTCTNTGACG-GAACATTG-CAACTACGG--CGCATTAAAAG-ACGAA-TTGATACGGGACAGAAT--AGTTGTTGGATTAAGAGATGCCAGCATTTCTGAGAAACTGCAGTTGGACGCCGAGTTAACACTCG--AAAAGTCGATAAACACTGCAAGGCAA--AAAG-NGGCAGTTCGAAAA-CAGCAATCAGTTGTCAGAAATCATGCAGTTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGGCCGAGGTCAACGTTTGAGCAGAGTAAGC-CACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCGGAGCAGTATC-G-AACACGCCAGAAGTACATGCCCAGCAACGCA-TTCAAAGTGCAGAGGGTGCGGCCGGATGGGTCACTGGGTTAAATG-CTGTC----GG----CCA-CGAAA---GTTGACGAAGTAGAG-GATCGAGCCTTCTTTT-GAACNATNGGCTGTGATGAGAAAGCCTGGACAATCAATTTAAAGGTG--AGACAATCGTTTATCAGATTCGAAATCGATACAGGGGCAGATGNAACTGCTATTTCTGAAAANGTGTATAAAACACTGGGTTCACCGCCTTTAATTAAAAGCAAAAAAAACCTTTTTGGGCCAGGTAATAAACCATTGC-ATGTCTTGGGTTNAATCACAGAAACTGTTTCTAGTGATAAATCATCAGCGGTCGAAGATATATATGTCGTNAAAAGCTTAGAACGATGTTTACTGGGCCGACCAGCTATTATAAAGCTTAACCTTATTGAGTTAAAATGCATAGAAGAGGTAATTTCGCTCGAAAACGTAAAATTGAGTC----CAAGTTATTTGGGGAAT-----TAGGTATGTTGAGCGGCGAATACCATATTTCAATCAATGACGGTGCTAAGCCATACGGGTTAACGGTTCCTCGACGCGTACCTATCCCGTTACTCCCCAAGGTCAAANATGAATTAGACAACATNGATGAAAAATCATGNGATTTTTCGTG
Reference ( family-7414 ) : GGTGTCAGAAGTTAAAGTATATTTGGANTAAATGAATNATGNTGTTCAATGAACT---ATTGTGTTTTAATTAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTAA-CACTC--A--TTTATTGTATGGGTAATGACGCGGACGAAATATTTAAT-TCATTT-AATTTAAGTGAGGA-ACGATAAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGATATAAAGAAAACGTCATA------------TTTGAACGGGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AG-ACTGTCG--ATGCATTTGTGACAGCC-CTACATTCTNTGACG-GAACATTG-CAACTACGG--CGCATTAAAAG-ACGAA-TTGATACGGGACAGAAT--AGTTGTTGGATTAAGAGATGCCAGCATTTCTGAGAAACTGCAGTTGGACGCCGAGTTAACACTCG--AAAAGTCGATAAACACTGCAAGGCAA--AAAG-NGGCAGTTCGAAAA-CAGCAATCAGTTGTCAGAAATCATGCAGTTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGGCCGAGGTCAACGTTTGAGCAG---GAG--CACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCGGAGCAGTATC-G-AACACGCCAGAAGTACATGCCCAGCAACGCA-TT-AAAGTGCAGAGGGTGCGGCCGGATGGGTCACTGGGTTAAATG-CTGTC----GG----CCA-CGAAA---GTTGACGAAGTAGAG-GATCGAGCCTTCTTTT-GAACNATNGGCTGTGATGAGAAAGCCTGGACAATCAATTTAAAGGTG--AGACAATCGTTTATCAGATTCGAAATCGATACAGGGGCAGATGNAACTGCTATTTCTGAAAANGTGTATAAAACACTGGGTTCACCGCCTTTAATTAAAAGCAAAAAAAACCTTTTTGGGCCAGGTAATAAACCATTGC-ATGTCTTGGGTTNAATCACAGAAACTGTTTCTAGTGATAAATCATCAGCGGTCGAAGATATATATGTCGTNAAAAGCTTAGAACGATGTTTACTGGGCCGACCAGCTATTATAAAGCTTAACCTTATTGAGTTAAAATGCATAGAAGAGGTAATTTCGCTCGAAAACGTAAAATTGAGTC----CAAGTTATTTGGGGAAT-----TAGGTATGTTGAGCGGCGAATACCATATTTCAATCAATGACGGTGCTAAGCCATACGGGTTAACGGTTCCTCGACGCGTACCTATCCCGTTACTCCCCAAGGTCAAANATGAATTAGACAACATNGATGAAAAATCATGNGATTTTTCGTG
gi|1 : GATGGCAGAAGTTAAAGTATATTTGGATTAAACGAATCATGCTGTTCAATGAACC---ATTGTGTTTTAATTAAACA
gi|1 : TTAATAA-CACTC--A--TTTATTGTATGGGTAATGATGCGGACGATATATTTAAT-TCATTT-AATTTAAGTGCGGA-ACAATAAAAAAAGTAGATCTACAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGATATAAAGAAT-CGTCATACATGTCCATGTATTTGAACGGGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AG-AATGTCG--ATGCATTTGTGACAGCC-CTACATTGTTTGGCG-GAACATTG-CAATAACGG--TACATTAAAAG-ACGAA-TTGATACGGGACATGAT--AGTTGTTGGATTAAAAGATGACAGCATTTCTGAGAAACTGCAGTTGGACGCCGAGTTGACATTCG--AAAAGTCAATTAACACTGCAAGGCAA--AAAG-AAGCAGTTCGAAAA-CAGCAATCAGTTGTCAGAAATCAT-TAGTTGAAAATACGATGGTATATGTAAAACAAACACAACGCAAGCCGAGGTCA----------------------CCAGTGAATCCTAGAAATAGGTGCTCAAGATGCGGAGCAGTATC-GGAACACGCCAGAAGTACATGCCCA-------------AAGTGTTGAGGATGCAGCCGGGTGGGTCACTGGGTTAAATG-CTGTC----AGAAAGCCA-CGAAA---GTTGACGAAGTAGAG-GAGCGAGCCTTCTTTG-GAACCATTGGCTGTGATGAGAAAGCCTGGATAATCAATTTAAAAATG--AGACAATCATTTATCAGATTTAAAATTGATACAAGGGCAGATGTAACTGCTATTTTTGAAAATGTGTATAAAACACTGGGTTCACCACCTTTAATTAAAAGCAAAAAAAATCTTTTTGGGCCATGTTATAAACCATTGC-ATGTCTTGCATTCAATCACAGAAACTGTTTCCAGTGATAAACTATCAGCGGTCGAAGATATACATGTCGTCAAAAGCTTAGAACGATGTTTACTGGGCCGACCAGCTATTATAAAGTTTAACCTTATTGAGTTAAAAGGCATAGAAGAGGTAATTTTGCTTGTAAACGTAACATTAA-------CAAGTTATTTGAGGAATTCTAGTAGGTATGTTGAGCGGCGAATACCATAGTTCAACCAATGACGGTGCTAAACCATTCAGGTTAATGGTTCCTCAACGCCTACCTATCCCATTACTCCGAAAAGTCAAACATGAATTAGACAACATGGATAAAAAATCATGTGATTTTTCGTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaataacactcatttattgtatgggtaatgatgcggacgatatatttaattcatttaatttaagtgcggaacaataaaaaaagtagatctacaaagatgtatgtgacaaattcaaaagttactttgtgatataaagaatcgtcatacatgtccatgtatttgaacgggccaaattcaatatgaggtgccaggaggagggcgagaatgtcgatgcatttgtgacagccctacattgtttggcggaacattgcaataacggtacattaaaagacgaattgatacgggacatgatagttgttggattaaaagatgacagcatttctgagaaactgcagttggacgccgagttgacattcgaaaagtcaattaacactgcaaggcaaaaagaagcagttcgaaaacagcaatcagttgtcagaaatcattagttgaaaatacgatggtatatgtaaaacaaacacaacgcaagccgaggtcaccagtgaatcctagaaataggtgctcaagatgcggagcagtatcggaacacgccagaagtacatgcccaaagtgttgaggatgcagccgggtgggtcactgggttaaatgctgtcagaaagccacgaaagttgacgaagtagaggagcgagccttctttggaaccattggctgtgatgagaaagcctggataatcaatttaaaaatgagacaatcatttatcagatttaaaattgatacaagggcagatgtaactgctatttttgaaaatgtgtataaaacactgggttcaccacctttaattaaaagcaaaaaaaatctttttgggccatgttataaaccattgcatgtcttgcattcaatcacagaaactgtttccagtgataaactatcagcggtcgaagatatacatgtcgtcaaaagcttagaacgatgtttactgggccgaccagctattataaagtttaaccttattgagttaaaaggcatagaagaggtaattttgcttgtaaacgtaacattaacaagttatttgaggaattctagtaggtatgttgagcggcgaataccatagttcaaccaatgacggtgctaaaccattcaggttaatggttcctcaacgcctacctatcccattactccgaaaagtcaaacatgaattagacaacatggataaaaaatcatgtgatttttcgtg
gi|10 : gatggcagaagttaaagtatatttggattaaacgaatcatgctgttcaatgaaccattgtgttttaattaaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAGTA--CTCTC--A--TTGATTGCATGGATAAAGATGCGGA---AATATTTGAT-TAATTT-AA
gi|11 : ttcaactgcaaaaaaaaaacaaagaaatgttaaaactgattttattttaccatgagttcctacaacttcgtctggaaaaaataattataagaaaccggaagactttgatgaattgtgagatttgaatattctatagtgccactgggactgagtcagaaggaagagggtcggcactATAAGAAGAATA-------AAATATCTTTGCGGCAAT-----TTCA--AATATTATTTTGTGAT-TAAATGAAACTTGATA------------TTTGAATGGGCAATTTTCAATATGAG---TTGT--CAGAG---ATGATCGGAG--AG-ACTGTAG--ATGTATTTGTGACAGCC-CTACATTCTATGAGA-GAACATTG-CAACAATGG--CGCATTAAA
gi|14 : acGTTACATTGTGAGATGTCAGCATTTCTGGGAA-CTGCAGTTGGACGCCGTGCTAACACTCG--AAAAGTCAATTAACACTTCAAGGCAT--AATA-AGGCA
gi|14 : GATACGGAGCAGTATCTA-AACACGTCAGAAGTACATGCaacgatacggagcagtatctaaacacgtcagaagtacatgc
gi|16 : gttacattgtgagatgtcagcatttctgggaactgcagttggacgccgtgctaacactcgaaaagtcaattaacacttcaaggcataataaggcaaacTGACAAGGACGAAATATTTAAT-TCATTT-AATTCAAGTTAGGA-A-------AAAAGTA------CAAAACTGTATGTGACAAA-----TTCA--AAAGTTACATTGTGAGAT
gi|16 : AAAAGTACAAAACTG-TATGTGACA-AATTCAAAAGTTACATTGTGAGATGTCAGCATTTCTG-GGAACTGgtcagcatttctgggaactg
gi|17 : tgacaaggacgaaatatttaattcatttaattcaagttaggaaG--AG-ACTGTAG--ATGTATTTGTGACAGCCATTAT-TTCTATGACA-GAACATTG-CAACTATGG--CGCATTAAA
gi|18 : ga--AG-ACTGTAT--ATGTATTTGTGACAGCC-CTACATTCTATGAGA-GAACATAG-CAAATATAG--CGAATTAAA
gi|2 : TGAGTAATGATGCGGACGAAATATTTAAT-TCATTT-AATTTAATTGAGAA-ACAATAAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGAT-TAAAAAAAATGTCACA------------TTTGAACGTGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AG-AATGTCG--ATGCATTTGTGACAGCC-CTACATTCTTTGACG-GAATGCTG-CAATTACGG--TACATAAAAAG-ACGAA-TTAAAACGGGACAGAGT--AGTTGTTGGATTAAGAGATGCCAGCATTTCTGAGAAACTGCAGTTGGACGCCGAATTAACACTCG--AAAGGTCAATAAACACTGCAATGCAA--AAAG-AGGCAGTTCGAAAA-CAGCAATTAGTTGTCAGAAATCATGCAATTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGACCGAG------GTTTGAGCAGAGTAAGC-CACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCG-----------G-AACACACAAGAAGTACATGCCTAGCAACGCA-TTCAAAGTGCAGAGGGTACGGCCGGATGAGTCACTGGGTTAAATGTCTGTC----AG----CCA-CGAAA---GTTGACGAAGTACCG-GATCGAGCCGTCTCTTGGAACTAGTGGCTGTGATGAGAAAGCCTGGACAATCAATTTAAAGGTG--AGACAATCGTTTATCAGATTCAAAATTTATACAGGGGCAGATGAAACTGCTATTTCTGAAAATGTGTATAAAACGGTTAGTT-ACCACCTTTAATTAAAAGCAAGAAAAACCTTTTTAGGCAAGGCAATAAACCATTGCAATG-CTTGGGTTAAATCACAAAAACTGTTTCTAGTGATAAATCATCAGCGGTCGAAGAAATATATGTCGTGAAAAGTTTAGAACGATTTTTACTGGGCCGATCAGCTATTGTAAAGATTAACCTTATTGAGTTAAAATGCATGGAAGAGGTAATTT----------CGTAAAATTGAGTC----AAAGTTATTTGGGTAAT-----TAGGCATGCTGAGCGGCGAATACCATATTTCAATTATTGACGGTGCTAAGCCATACGGGTTTACGGTTCCTCGACGCGTACCTATCTCGTTACTCCCCAAGGTCAAAAATGAATTAGACAACATTGA-GAAAAATCATGAGATTTTTCGTG
gi|3 : tGGTGTCAGAAGTTAAAGTATATTTGGATTAAATGAATAATGATGTTCAATGAACT---ATTGTGTTTTAATTAAATA
gi|3 : atAGTAAACACTCTCA--TTTATCGTATTGGTAATGATGCGGACGAAATATTTAAT-TCATTT-AATTAAAGTGAGGA-ACAATCAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTAATTTGTGAT-TAAAAGAAACGTCATA------------TTTAAACGGGCCGAATTCAATATGAA---GTGC--CAG-G---AGGAG-GGCG--AG-AATGTCA--ATGCATTTGTGACAGTC-CTACATTCCTTGGCT-GAACATTG-CAATTACGG--TACATTAAAAA-ACGAA-TTAATACGGGACAGAAT--AGTTGTTGAATTAAGAGATGCCAGCATTTCTGAGAAACTGTAGTTGGACGCTGAGTTGATACTCG--AAAAGTCAATAAACGCTGCAAGGCAA--ACAG-TAGCAGTTCGAAAA-CAGCAATCAGTTGTCAGAAACCATGCAATTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGACCGAGGTCAACGTTTGAGCAGAATAAGC-CACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCGGATCAGTACCGG-AAAACACCAGAAGTACACGCCCAGCAACGCATTT-AAAGTGCAGAGGGTGCGGCCGGGTGAGTCATTaaacaaaataatatatatctaaaaatggcacaattccaagtaactcctcttgaaaatttcaattttaaaaggccggaagactttgacaaatggattttgagatttgaacgtttcaaagtggcatcggggcttagtgcgaaggaagaggaacagcaagtaaacactctcatttatcgtattggtaatgatgcggacgaaatatttaattcatttaattaaagtgaggaacaatcaaaaaaatacaaagatgtatgtgacaaattcaaaagttaatttgtgattaaaagaaacgtcatatttaaacgggccgaattcaatatgaagtgccaggaggagggcgagaatgtcaatgcatttgtgacagtcctacattccttggctgaacattgcaattacggtacattaaaaaacgaattaatacgggacagaatagttgttgaattaagagatgccagcatttctgagaaactgtagttggacgctgagttgatactcgaaaagtcaataaacgctgcaaggcaaacagtagcagttcgaaaacagcaatcagttgtcagaaaccatgcaattgaaaatacgatggactatgttaaacaaacacaacgcagaccgaggtcaacgtttgagcagaataagccaccagtgaagcctagaagtcggtgctcaagatgcggatcagtaccggaaaacaccagaagtacacgcccagcaacgcatttaaagtgcagagggtgcggccgggtgagtcattaag
gi|4 : atggtgtcagaagttaaagtatatttggattaaatgaataatgatgttcaatgaactattgtgttttaattaaataaaacaaaataatatatatctaaaaatggcacaattccaagtaactcctcttgaaaatttcaattttaaaaggccggaagactttgacaaatggattttgagatttgaacgtttcaaagtggcatcggggcttagtgcgaaggaagaggaacagcaTGCATT-TGTAACGAGAACATTG-CAACTATGG--TGCATTAAAaag
gi|4 : -GGAG--AG-ACTGTAG--ATGCATTTGTGATAGCC-CTACATTCTATGAGA-GAACATTG-CAACTATGG--CACATTGAAC--ATGGA-TTGTTAAGATACAGTAT--AGTTATTGGTTTAAGAAGTGCCAGTATTTCAGAGAAATTGGGGTTGGATGATGAGTAAATAGTCG--AAAAGTAGATAAACATTGCCGGGCAA--AAGG-TGGTTATTAGAAAAACAACAATCAGTTGTCCAAAATTACGTTGTTGAAAATACACTAGACTATGTCAAACAAAAACAGCAAAAGCTGATAGCAACATTTAAACAG---GAAGTCAACAGTGAAACTTAGAAGTCGGTGCGCAAGATATGGAATAGTATC-----------AGAAGTACATGCCCAGCAGTGCA-TTGAAAGTG-----------ACTGGACGGGCCACTGTGTAAAGTA-CTGTCTTTCGG----CCA-CGAAC---GTCGATTAAGTAGAAAGAT------TTCTTGT-GAACAATAGGTTGTAATGAGGAAGCCTGGTCAATTAATTCAAAGGTGATACACAATAATTTATTAAATTCGAAATCGATACAGTGGCAG-CG-----------TCTGTAATAGTTTATATAACACTATGTTCGCTGCCTTTAAATAAAATCAActtggagagactgtagatgcatttgtgatagccctacattctatgagagaacattgcaactatggcacattgaacatggattgttaagatacagtatagttattggtttaagaagtgccagtatttcagagaaattggggttggatgatgagtaaatagtcgaaaagtagataaacattgccgggcaaaaggtggttattagaaaaacaacaatcagttgtccaaaattacgttgttgaaaatacactagactatgtcaaacaaaaacagcaaaagctgatagcaacatttaaacaggaagtcaacagtgaaacttagaagtcggtgcgcaagatatggaatagtatcagaagtacatgcccagcagtgcattgaaagtgactggacgggccactgtgtaaagtactgtctttcggccacgaacgtcgattaagtagaaagatttcttgtgaacaataggttgtaatgaggaagcctggtcaattaattcaaaggtgatacacaataatttattaaattcgaaatcgatacagtggcagcgtctgtaatagtttatataacactatgttcgctgcctttaaataaaatcaa
gi|5 : tgcatttgtaacgagaacattgcaactatggtgcattaaacttTAA-TACCC--AAGTGTATTGTATGGGTAGTGGGACGGATGACAT-TCTGACATCATTTTCATT---GTCAGAAGATGCTAGTAAGGATT------CGGACAC---TGTGACAGAAAGTCTTCATCAA---TATTTTGTGCCA-AAAGATAATGTAATT------------TTTGAACGTTCAAAGTTCA--ATGAGCGAGTGCAGCTG-GCAAATGAA-GGCGTAAGCACATTCGTTACGTATTTGT-ACAG-------AT----TGGCG-GGAAATTATCAATT-CAGAATGCTTC--ACG-ATGAA-CTCATAAGAGACAGAAT--TATCATGGGCTTAAGAGACAATAGACTTTAAGAAAAACTTCAGTTAGACGATGAGCTTACACTTGAAAAAAGCTGTTACACA-GGCAAGACAGCTAAAGCTGTCAAGTC----A-CAGCAGTCTGTTGT
gi|6 : tttgatttcagtaaaccagaaaactggtaaaatggttccagtgctttgatcggtttcggtcagcatctggtttgaaagagaagtgcaagtGATACGGAGCAGTATCTA-AACACGTCAGAAGTACATGCAGAGTAACGCA-CTCAAGGAACAGAAGGCGCAATCGGATGGGTTACTGGGTCAAATG-CTCTC----TG----TCAACGAAAAACGTTGACAAAGTAGAG-GATCGAGCCTTCCTTT-GAACGATAGGCTGTGACGAGAAAGCCTGAACAATTAATTTAA---------ACA-------ATCAGATTC-AAATCGATACAGGGGCAGATGCAACTGATATTTCTGAAAAAGTATATAAAACACTGGGTTTACCACCTTTAATTAAAAGCAAAAAAAA-AGTTTTGGGCCAGGTAATAAACCATTGC-ATGTCTTGGGTTTAATCATAGAAACTGTTTCTAG-------TCATCAGCGGTCGAAGATATATAAGTCGTCAATACCTTAGAACGATGTCTACTGGGACGACC----ATTATGAAGCTTAATCTTATTGAGCT-AAATGCAAAGAAGAGGTCATTCCGCTCGAAAACGTAAAAATGAGTtcgaggcaacaaacaggaagaaaacaaaatagacagtg
gi|7 : acATATATGTCGTGAAAAG-TTAAGACAATGTTTACTGGGCCGACCAGCTATTATAAAGCTTAACCTTATTGAGTTAAAATGCATAGAAGTGGTAGTTTCGCTTGAAAACGTAAATTTGAGTCATCCCAAGTTGTTTGGGGAAT-----TAGGTATGTTGGGCGGCAAATACCATATTTCAATCAATGACGCTGTTAAGCCATACAGCTTAACGGTTCATCGACGTGAACCTTTCCTGTTACTCCCCAAGGTTAAA
gi|8 : GGTGTCAGAAGTTAAAGTTTATTTGGAATAAATGAATAATGCTGTTCAATGAACT---ATTGTGTTTTAATTAGATA
gi|9 : ttgtatataaccaaatgcacggtgcatggtaacttgatacacaccatcttgcatgtatcccgagtatataaacctaggccgcactagtagcagggcttttattctgttgtagtttcaaataaacatacatgtatttacagtaactgacacTATTTGGAGTTAATGAATTATGATGCTCAATGTACTATAATTGTTTTTTAATTAGATAaaacaaaattatatata
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATTGTATATAACTAAATGCACTCAGGCTACATGGTAACATGATGCACACTGTCTTGCGTTATGCTGCTCTGGTCGCAGGGCTTTTATTCTGTTGTAGTCTCAAATAAACATACACATATTTACAGCCACTGACTTGTGATTTATTCAGAGCAATATATATAATGA
Unaligned ( gi|13 ): ACACACTATCTTGCATGTGTCCTGAGAACATAAGCCTATGCTGCACTGGTCGCAGGGCTTTTATTTTGTTGCAGTCTCAAATAAACATACACGTATTTACGGTAACTGACTTATTCAGAACATAATTATTTTATAAAGGCAATA
Unaligned ( gi|15 ): TATATATAACTATTAATGCACTCTACATGGTAACATGATACACACTATCTTGTATGTGTCCTGAGTATATCAACCTATGCCGCTCTGGTCGCAGGTTGTAGTCTCAAATAAACGTACACGTATTTACAGCAAC
Unaligned ( gi|19 ): ACATACAAATCATACTATTAAATGTTTTAGAAATAAA
Alignments
lowQualScore : 111 11 11111 111111 11111 1 444444444444 111 11 111 1111111 111 33 1 44444 1 111 1 1 11 1 1 1 1 2222 33333 1
lowQualScore : 1 1 1 777 33 88888 4 1 6 6 9 8 77 1 999999 1 2 66666 99 3 5 1 0 111111111111 0 444 11 8 444 6 66 5 2 66 5 1 2 4 4 66 77 6 3 1 2 99 1 0 0 99 0 1 99 77 8 2 1 4444444 0 0 666 0 0 1 00 8 44 1 1 0 66666 0 777 0 0 2 0 1 1 333 33 2 7777 0 3 0 2 1 0 00 6 2 2 3 7 1 7 1 6 3 0 3 6 4 3 2 8888 33333 0 1 1 5 1
lowQualScore : . . . ... .. ..... . . . . . . .. . ...... . . ..... .. . . . . ............ . ... .. . ... . .. . . .. . . . . . .. .. . . . . .. . . . .. . . .. .. . . . ....... . . ... . . . .. . .. . . . ..... . ... . . . . . . ... .. . .... . . . . . . .. . . . . . . . . . . . . . . . . .... ..... . . . . .
lowQualScore : 0 0 0 555 22 55555 8 0 7 7 0 0 88 8 222222 0 5 77777 22 5 5 4 8 000000000000 8 000 00 0 000 7 99 0 5 99 0 1 6 4 4 11 77 7 5 0 5 22 7 1 3 22 7 0 22 77 0 5 2 8888888 2 2 555 2 2 0 33 2 22 4 2 0 88888 0 555 2 0 5 0 0 0 888 88 5 0000 5 2 8 5 0 2 55 5 0 0 3 3 0 3 0 5 2 2 2 5 2 5 5 3333 33333 7 0 0 5 0
consensus : GGTGTCAGAAGTTAAAGTATATTTGGANTAAATGAATNATGNTGTTCAATGAACT---ATTGTGTTTTAATTAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTAA-CACTC--A--TTTATTGTATGGGTAATGACGCGGACGAAATATTTAAT-TCATTT-AATTTAAGTGAGGA-ACGATAAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGATATAAAGAAAACGTCATA------------TTTGAACGGGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AG-ACTGTCG--ATGCATTTGTGACAGCC-CTACATTCTNTGACG-GAACATTG-CAACTACGG--CGCATTAAAAG-ACGAA-TTGATACGGGACAGAAT--AGTTGTTGGATTAAGAGATGCCAGCATTTCTGAGAAACTGCAGTTGGACGCCGAGTTAACACTCG--AAAAGTCGATAAACACTGCAAGGCAA--AAAG-NGGCAGTTCGAAAA-CAGCAATCAGTTGTCAGAAATCATGCAGTTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGGCCGAGGTCAACGTTTGAGCAGAGTAAGCCACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCGGAGCAGTATC-GAACACGCCAGAAGTACATGCCCAGCAACGCATTCAAAGTGCAGAGGGTGCGGCCGGATGGGTCACTGGGTTAAATG-CTGTC----GGCCA-CGAAA---GTTGACGAAGTAGAG-GATCGAGCCTTCTTTT-GAACNATNGGCTGTGATGAGAAAGCCTGGACAATCAATTTAAAGGTG--AGACAATCGTTTATCAGATTCGAAATCGATACAGGGGCAGATGNAACTGCTATTTCTGAAAANGTGTATAAAACACTGGGTTCACCGCCTTTAATTAAAAGCAAAAAAAACCTTTTTGGGCCAGGTAATAAACCATTGC-ATGTCTTGGGTTNAATCACAGAAACTGTTTCTAGTGATAAATCATCAGCGGTCGAAGATATATATGTCGTNAAAAGCTTAGAACGATGTTTACTGGGCCGACCAGCTATTATAAAGCTTAACCTTATTGAGTTAAAATGCATAGAAGAGGTAATTTCGCTCGAAAACGTAAAATTGAGTC----CAAGTTATTTGGGGAAT-----TAGGTATGTTGAGCGGCGAATACCATATTTCAATCAATGACGGTGCTAAGCCATACGGGTTAACGGTTCCTCGACGCGTACCTATCCCGTTACTCCCCAAGGTCAAANATGAATTAGACAACATNGATGAAAAATCATGNGATTTTTCGTG
Reference ( family-7414 ) : GGTGTCAGAAGTTAAAGTATATTTGGANTAAATGAATNATGNTGTTCAATGAACT---ATTGTGTTTTAATTAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTAA-CACTC--A--TTTATTGTATGGGTAATGACGCGGACGAAATATTTAAT-TCATTT-AATTTAAGTGAGGA-ACGATAAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGATATAAAGAAAACGTCATA------------TTTGAACGGGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AG-ACTGTCG--ATGCATTTGTGACAGCC-CTACATTCTNTGACG-GAACATTG-CAACTACGG--CGCATTAAAAG-ACGAA-TTGATACGGGACAGAAT--AGTTGTTGGATTAAGAGATGCCAGCATTTCTGAGAAACTGCAGTTGGACGCCGAGTTAACACTCG--AAAAGTCGATAAACACTGCAAGGCAA--AAAG-NGGCAGTTCGAAAA-CAGCAATCAGTTGTCAGAAATCATGCAGTTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGGCCGAGGTCAACGTTTGAGCAGAGTAAGCCACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCGGAGCAGTATC-GAACACGCCAGAAGTACATGCCCAGCAACGCATTCAAAGTGCAGAGGGTGCGGCCGGATGGGTCACTGGGTTAAATG-CTGTC----GGCCA-CGAAA---GTTGACGAAGTAGAG-GATCGAGCCTTCTTTT-GAACNATNGGCTGTGATGAGAAAGCCTGGACAATCAATTTAAAGGTG--AGACAATCGTTTATCAGATTCGAAATCGATACAGGGGCAGATGNAACTGCTATTTCTGAAAANGTGTATAAAACACTGGGTTCACCGCCTTTAATTAAAAGCAAAAAAAACCTTTTTGGGCCAGGTAATAAACCATTGC-ATGTCTTGGGTTNAATCACAGAAACTGTTTCTAGTGATAAATCATCAGCGGTCGAAGATATATATGTCGTNAAAAGCTTAGAACGATGTTTACTGGGCCGACCAGCTATTATAAAGCTTAACCTTATTGAGTTAAAATGCATAGAAGAGGTAATTTCGCTCGAAAACGTAAAATTGAGTC----CAAGTTATTTGGGGAAT-----TAGGTATGTTGAGCGGCGAATACCATATTTCAATCAATGACGGTGCTAAGCCATACGGGTTAACGGTTCCTCGACGCGTACCTATCCCGTTACTCCCCAAGGTCAAANATGAATTAGACAACATNGATGAAAAATCATGNGATTTTTCGTG
gi|1 : GATGGCAGAAGTTAAAGTATATTTGGATTAAACGAATCATGCTGTTCAATGAACC---ATTGTGTTTTAATTAAACA
gi|1 : TTAATAA-CACTC--A--TTTATTGTATGGGTAATGATGCGGACGATATATTTAAT-TCATTT-AATTTAAGTGCGGA-ACAATAAAAAAAGTAGATCTACAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGATATAAAGAAT-CGTCATACATGTCCATGTATTTGAACGGGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AG-AATGTCG--ATGCATTTGTGACAGCC-CTACATTGTTTGGCG-GAACATTG-CAATAACGG--TACATTAAAAG-ACGAA-TTGATACGGGACATGAT--AGTTGTTGGATTAAAAGATGACAGCATTTCTGAGAAACTGCAGTTGGACGCCGAGTTGACATTCG--AAAAGTCAATTAACACTGCAAGGCAA--AAAG-AAGCAGTTCGAAAA-CAGCAATCAGTTGTCAGAAATCAT-TAGTTGAAAATACGATGGTATATGTAAAACAAACACAACGCAAGCCGAGGTCA---------------------CCAGTGAATCCTAGAAATAGGTGCTCAAGATGCGGAGCAGTATCGGAACACGCCAGAAGTACATGCC------------CAAAGTGTTGAGGATGCAGCCGGGTGGGTCACTGGGTTAAATG-CTGTCAGAAAGCCA-CGAAA---GTTGACGAAGTAGAG-GAGCGAGCCTTCTTTG-GAACCATTGGCTGTGATGAGAAAGCCTGGATAATCAATTTAAAAATG--AGACAATCATTTATCAGATTTAAAATTGATACAAGGGCAGATGTAACTGCTATTTTTGAAAATGTGTATAAAACACTGGGTTCACCACCTTTAATTAAAAGCAAAAAAAATCTTTTTGGGCCATGTTATAAACCATTGC-ATGTCTTGCATTCAATCACAGAAACTGTTTCCAGTGATAAACTATCAGCGGTCGAAGATATACATGTCGTCAAAAGCTTAGAACGATGTTTACTGGGCCGACCAGCTATTATAAAGTTTAACCTTATTGAGTTAAAAGGCATAGAAGAGGTAATTTTGCTTGTAAACGTAACATTAA-------CAAGTTATTTGAGGAATTCTAGTAGGTATGTTGAGCGGCGAATACCATAGTTCAACCAATGACGGTGCTAAACCATTCAGGTTAATGGTTCCTCAACGCCTACCTATCCCATTACTCCGAAAAGTCAAACATGAATTAGACAACATGGATAAAAAATCATGTGATTTTTCGTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaataacactcatttattgtatgggtaatgatgcggacgatatatttaattcatttaatttaagtgcggaacaataaaaaaagtagatctacaaagatgtatgtgacaaattcaaaagttactttgtgatataaagaatcgtcatacatgtccatgtatttgaacgggccaaattcaatatgaggtgccaggaggagggcgagaatgtcgatgcatttgtgacagccctacattgtttggcggaacattgcaataacggtacattaaaagacgaattgatacgggacatgatagttgttggattaaaagatgacagcatttctgagaaactgcagttggacgccgagttgacattcgaaaagtcaattaacactgcaaggcaaaaagaagcagttcgaaaacagcaatcagttgtcagaaatcattagttgaaaatacgatggtatatgtaaaacaaacacaacgcaagccgaggtcaccagtgaatcctagaaataggtgctcaagatgcggagcagtatcggaacacgccagaagtacatgcccaaagtgttgaggatgcagccgggtgggtcactgggttaaatgctgtcagaaagccacgaaagttgacgaagtagaggagcgagccttctttggaaccattggctgtgatgagaaagcctggataatcaatttaaaaatgagacaatcatttatcagatttaaaattgatacaagggcagatgtaactgctatttttgaaaatgtgtataaaacactgggttcaccacctttaattaaaagcaaaaaaaatctttttgggccatgttataaaccattgcatgtcttgcattcaatcacagaaactgtttccagtgataaactatcagcggtcgaagatatacatgtcgtcaaaagcttagaacgatgtttactgggccgaccagctattataaagtttaaccttattgagttaaaaggcatagaagaggtaattttgcttgtaaacgtaacattaacaagttatttgaggaattctagtaggtatgttgagcggcgaataccatagttcaaccaatgacggtgctaaaccattcaggttaatggttcctcaacgcctacctatcccattactccgaaaagtcaaacatgaattagacaacatggataaaaaatcatgtgatttttcgtg
gi|10 : gatggcagaagttaaagtatatttggattaaacgaatcatgctgttcaatgaaccattgtgttttaattaaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAGTA--CTCTC--A--TTGATTGCATGGATAAAGATGCGGA---AATATTTGAT-TAATTT-AA
gi|11 : ttcaactgcaaaaaaaaaacaaagaaatgttaaaactgattttattttaccatgagttcctacaacttcgtctggaaaaaataattataagaaaccggaagactttgatgaattgtgagatttgaatattctatagtgccactgggactgagtcagaaggaagagggtcggcactATAAGAAGAATA-------AAATATCTTTGCGGCAAT-----TTCA--AATATTATTTTGTGAT-TAAATGAAACTTGATA------------TTTGAATGGGCAATTTTCAATATGAG---TTGT--CAGAG---ATGATCGGAG--AG-ACTGTAG--ATGTATTTGTGACAGCC-CTACATTCTATGAGA-GAACATTG-CAACAATGG--CGCATTAAA
gi|14 : acGTTACATTGTGAGATGTCAGCATTTCTGGGAA-CTGCAGTTGGACGCCGTGCTAACACTCG--AAAAGTCAATTAACACTTCAAGGCAT--AATA-AGGCA
gi|14 : GATACGGAGCAGTATCTAAACACGTCAGAAGTACATGCaacgatacggagcagtatctaaacacgtcagaagtacatgc
gi|16 : gttacattgtgagatgtcagcatttctgggaactgcagttggacgccgtgctaacactcgaaaagtcaattaacacttcaaggcataataaggcaaacTGACAAGGACGAAATATTTAAT-TCATTT-AATTCAAGTTAGGA-A-------AAAAGTA------CAAAACTGTATGTGACAAA-----TTCA--AAAGTTACATTGTGAGAT
gi|16 : AAAAGTACAAAACTG-TATGTGACA-AATTCAAAAGTTACATTGTGAGATGTCAGCATTTCTG-GGAACTGgtcagcatttctgggaactg
gi|17 : tgacaaggacgaaatatttaattcatttaattcaagttaggaaG--AG-ACTGTAG--ATGTATTTGTGACAGCCATTAT-TTCTATGACA-GAACATTG-CAACTATGG--CGCATTAAA
gi|18 : ga--AG-ACTGTAT--ATGTATTTGTGACAGCC-CTACATTCTATGAGA-GAACATAG-CAAATATAG--CGAATTAAA
gi|2 : TGAGTAATGATGCGGACGAAATATTTAAT-TCATTT-AATTTAATTGAGAA-ACAATAAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGAT-TAAAAAAAATGTCACA------------TTTGAACGTGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AG-AATGTCG--ATGCATTTGTGACAGCC-CTACATTCTTTGACG-GAATGCTG-CAATTACGG--TACATAAAAAG-ACGAA-TTAAAACGGGACAGAGT--AGTTGTTGGATTAAGAGATGCCAGCATTTCTGAGAAACTGCAGTTGGACGCCGAATTAACACTCG--AAAGGTCAATAAACACTGCAATGCAA--AAAG-AGGCAGTTCGAAAA-CAGCAATTAGTTGTCAGAAATCATGCAATTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGACCGAG------GTTTGAGCAGAGTAAGCCACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCG-----------GAACACACAAGAAGTACATGCCTAGCAACGCATTCAAAGTGCAGAGGGTACGGCCGGATGAGTCACTGGGTTAAATGTCTGTC----AGCCA-CGAAA---GTTGACGAAGTACCG-GATCGAGCCGTCTCTTGGAACTAGTGGCTGTGATGAGAAAGCCTGGACAATCAATTTAAAGGTG--AGACAATCGTTTATCAGATTCAAAATTTATACAGGGGCAGATGAAACTGCTATTTCTGAAAATGTGTATAAAACGGTTAGTT-ACCACCTTTAATTAAAAGCAAGAAAAACCTTTTTAGGCAAGGCAATAAACCATTGCAATG-CTTGGGTTAAATCACAAAAACTGTTTCTAGTGATAAATCATCAGCGGTCGAAGAAATATATGTCGTGAAAAGTTTAGAACGATTTTTACTGGGCCGATCAGCTATTGTAAAGATTAACCTTATTGAGTTAAAATGCATGGAAGAGGTAATTT----------CGTAAAATTGAGTC----AAAGTTATTTGGGTAAT-----TAGGCATGCTGAGCGGCGAATACCATATTTCAATTATTGACGGTGCTAAGCCATACGGGTTTACGGTTCCTCGACGCGTACCTATCTCGTTACTCCCCAAGGTCAAAAATGAATTAGACAACATTGA-GAAAAATCATGAGATTTTTCGTG
gi|3 : tGGTGTCAGAAGTTAAAGTATATTTGGATTAAATGAATAATGATGTTCAATGAACT---ATTGTGTTTTAATTAAATA
gi|3 : atAGTAAACACTCTCA--TTTATCGTATTGGTAATGATGCGGACGAAATATTTAAT-TCATTT-AATTAAAGTGAGGA-ACAATCAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTAATTTGTGAT-TAAAAGAAACGTCATA------------TTTAAACGGGCCGAATTCAATATGAA---GTGC--CAG-G---AGGAG-GGCG--AG-AATGTCA--ATGCATTTGTGACAGTC-CTACATTCCTTGGCT-GAACATTG-CAATTACGG--TACATTAAAAA-ACGAA-TTAATACGGGACAGAAT--AGTTGTTGAATTAAGAGATGCCAGCATTTCTGAGAAACTGTAGTTGGACGCTGAGTTGATACTCG--AAAAGTCAATAAACGCTGCAAGGCAA--ACAG-TAGCAGTTCGAAAA-CAGCAATCAGTTGTCAGAAACCATGCAATTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGACCGAGGTCAACGTTTGAGCAGAATAAGCCACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCGGATCAGTACCGGAAAACACCAGAAGTACACGCCCAGCAACGCATTTAAAGTGCAGAGGGTGCGGCCGGGTGAGTCATTaaacaaaataatatatatctaaaaatggcacaattccaagtaactcctcttgaaaatttcaattttaaaaggccggaagactttgacaaatggattttgagatttgaacgtttcaaagtggcatcggggcttagtgcgaaggaagaggaacagcaagtaaacactctcatttatcgtattggtaatgatgcggacgaaatatttaattcatttaattaaagtgaggaacaatcaaaaaaatacaaagatgtatgtgacaaattcaaaagttaatttgtgattaaaagaaacgtcatatttaaacgggccgaattcaatatgaagtgccaggaggagggcgagaatgtcaatgcatttgtgacagtcctacattccttggctgaacattgcaattacggtacattaaaaaacgaattaatacgggacagaatagttgttgaattaagagatgccagcatttctgagaaactgtagttggacgctgagttgatactcgaaaagtcaataaacgctgcaaggcaaacagtagcagttcgaaaacagcaatcagttgtcagaaaccatgcaattgaaaatacgatggactatgttaaacaaacacaacgcagaccgaggtcaacgtttgagcagaataagccaccagtgaagcctagaagtcggtgctcaagatgcggatcagtaccggaaaacaccagaagtacacgcccagcaacgcatttaaagtgcagagggtgcggccgggtgagtcattaag
gi|4 : atggtgtcagaagttaaagtatatttggattaaatgaataatgatgttcaatgaactattgtgttttaattaaataaaacaaaataatatatatctaaaaatggcacaattccaagtaactcctcttgaaaatttcaattttaaaaggccggaagactttgacaaatggattttgagatttgaacgtttcaaagtggcatcggggcttagtgcgaaggaagaggaacagcaTGCATT-TGTAACGAGAACATTG-CAACTATGG--TGCATTAAAaag
gi|4 : -GGAG--AG-ACTGTAG--ATGCATTTGTGATAGCC-CTACATTCTATGAGA-GAACATTG-CAACTATGG--CACATTGAAC--ATGGA-TTGTTAAGATACAGTAT--AGTTATTGGTTTAAGAAGTGCCAGTATTTCAGAGAAATTGGGGTTGGATGATGAGTAAATAGTCG--AAAAGTAGATAAACATTGCCGGGCAA--AAGG-TGGTTATTAGAAAAACAACAATCAGTTGTCCAAAATTACGTTGTTGAAAATACACTAGACTATGTCAAACAAAAACAGCAAAAGCTGATAGCAACATTTAAACAGG--AAGTCAACAGTGAAACTTAGAAGTCGGTGCGCAAGATATGGAATAGTATC----------AGAAGTACATGCCCAGCAGTGCATTGAAAGTG-----------ACTGGACGGGCCACTGTGTAAAGTA-CTGTCTTTCGGCCA-CGAAC---GTCGATTAAGTAGAAAGAT------TTCTTGT-GAACAATAGGTTGTAATGAGGAAGCCTGGTCAATTAATTCAAAGGTGATACACAATAATTTATTAAATTCGAAATCGATACAGTGGCAG-CG-----------TCTGTAATAGTTTATATAACACTATGTTCGCTGCCTTTAAATAAAATCAActtggagagactgtagatgcatttgtgatagccctacattctatgagagaacattgcaactatggcacattgaacatggattgttaagatacagtatagttattggtttaagaagtgccagtatttcagagaaattggggttggatgatgagtaaatagtcgaaaagtagataaacattgccgggcaaaaggtggttattagaaaaacaacaatcagttgtccaaaattacgttgttgaaaatacactagactatgtcaaacaaaaacagcaaaagctgatagcaacatttaaacaggaagtcaacagtgaaacttagaagtcggtgcgcaagatatggaatagtatcagaagtacatgcccagcagtgcattgaaagtgactggacgggccactgtgtaaagtactgtctttcggccacgaacgtcgattaagtagaaagatttcttgtgaacaataggttgtaatgaggaagcctggtcaattaattcaaaggtgatacacaataatttattaaattcgaaatcgatacagtggcagcgtctgtaatagtttatataacactatgttcgctgcctttaaataaaatcaa
gi|5 : tgcatttgtaacgagaacattgcaactatggtgcattaaacttTAA-TACCC--AAGTGTATTGTATGGGTAGTGGGACGGATGACAT-TCTGACATCATTTTCATT---GTCAGAAGATGCTAGTAAGGATT------CGGACAC---TGTGACAGAAAGTCTTCATCAA---TATTTTGTGCCA-AAAGATAATGTAATT------------TTTGAACGTTCAAAGTTCA--ATGAGCGAGTGCAGCTG-GCAAATGAA-GGCGTAAGCACATTCGTTACGTATTTGT-ACAG-------AT----TGGCG-GGAAATTATCAATT-CAGAATGCTTC--ACG-ATGAA-CTCATAAGAGACAGAAT--TATCATGGGCTTAAGAGACAATAGACTTTAAGAAAAACTTCAGTTAGACGATGAGCTTACACTTGAAAAAAGCTGTTACACA-GGCAAGACAGCTAAAGCTGTCAAGTC----A-CAGCAGTCTGTTGT
gi|6 : tttgatttcagtaaaccagaaaactggtaaaatggttccagtgctttgatcggtttcggtcagcatctggtttgaaagagaagtgcaagtGATACGGAGCAGTATCTAAACACGTCAGAAGTACATGCAGAGTAACGCACTCAAGGAACAGAAGGCGCAATCGGATGGGTTACTGGGTCAAATG-CTCTC----TGTCAACGAAAAACGTTGACAAAGTAGAG-GATCGAGCCTTCCTTT-GAACGATAGGCTGTGACGAGAAAGCCTGAACAATTAATTTAA---------ACA-------ATCAGATTC-AAATCGATACAGGGGCAGATGCAACTGATATTTCTGAAAAAGTATATAAAACACTGGGTTTACCACCTTTAATTAAAAGCAAAAAAAA-AGTTTTGGGCCAGGTAATAAACCATTGC-ATGTCTTGGGTTTAATCATAGAAACTGTTTCTAG-------TCATCAGCGGTCGAAGATATATAAGTCGTCAATACCTTAGAACGATGTCTACTGGGACGACC----ATTATGAAGCTTAATCTTATTGAGCT-AAATGCAAAGAAGAGGTCATTCCGCTCGAAAACGTAAAAATGAGTtcgaggcaacaaacaggaagaaaacaaaatagacagtg
gi|7 : acATATATGTCGTGAAAAG-TTAAGACAATGTTTACTGGGCCGACCAGCTATTATAAAGCTTAACCTTATTGAGTTAAAATGCATAGAAGTGGTAGTTTCGCTTGAAAACGTAAATTTGAGTCATCCCAAGTTGTTTGGGGAAT-----TAGGTATGTTGGGCGGCAAATACCATATTTCAATCAATGACGCTGTTAAGCCATACAGCTTAACGGTTCATCGACGTGAACCTTTCCTGTTACTCCCCAAGGTTAAA
gi|8 : GGTGTCAGAAGTTAAAGTTTATTTGGAATAAATGAATAATGCTGTTCAATGAACT---ATTGTGTTTTAATTAGATA
gi|9 : ttgtatataaccaaatgcacggtgcatggtaacttgatacacaccatcttgcatgtatcccgagtatataaacctaggccgcactagtagcagggcttttattctgttgtagtttcaaataaacatacatgtatttacagtaactgacacTATTTGGAGTTAATGAATTATGATGCTCAATGTACTATAATTGTTTTTTAATTAGATAaaacaaaattatatata
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATTGTATATAACTAAATGCACTCAGGCTACATGGTAACATGATGCACACTGTCTTGCGTTATGCTGCTCTGGTCGCAGGGCTTTTATTCTGTTGTAGTCTCAAATAAACATACACATATTTACAGCCACTGACTTGTGATTTATTCAGAGCAATATATATAATGA
Unaligned ( gi|13 ): ACACACTATCTTGCATGTGTCCTGAGAACATAAGCCTATGCTGCACTGGTCGCAGGGCTTTTATTTTGTTGCAGTCTCAAATAAACATACACGTATTTACGGTAACTGACTTATTCAGAACATAATTATTTTATAAAGGCAATA
Unaligned ( gi|15 ): TATATATAACTATTAATGCACTCTACATGGTAACATGATACACACTATCTTGTATGTGTCCTGAGTATATCAACCTATGCCGCTCTGGTCGCAGGTTGTAGTCTCAAATAAACGTACACGTATTTACAGCAAC
Unaligned ( gi|19 ): ACATACAAATCATACTATTAAATGTTTTAGAAATAAA
Alignments
lowQualScore : 111 11 11111 111111 11111 1 444444444444 111 11 111 1111111 111 33 1 44444 1 111 1 1 11 1 1 1 1 2222 33333 1
lowQualScore : 1 1 1 777 33 88888 4 1 6 6 9 8 77 1 999999 1 2 66666 99 3 5 1 0 111111111111 0 444 11 8 444 6 66 5 2 66 5 1 2 4 4 66 77 6 3 1 2 99 1 0 0 99 0 1 99 77 8 2 1 4444444 0 0 666 0 0 1 00 8 44 1 1 0 66666 0 777 0 0 2 0 1 1 333 33 2 7777 0 3 0 2 1 0 00 6 2 2 3 7 1 7 1 6 3 0 3 6 4 3 2 8888 33333 0 1 1 5 1
lowQualScore : . . . ... .. ..... . . . . . . .. . ...... . . ..... .. . . . . ............ . ... .. . ... . .. . . .. . . . . . .. .. . . . . .. . . . .. . . .. .. . . . ....... . . ... . . . .. . .. . . . ..... . ... . . . . . . ... .. . .... . . . . . . .. . . . . . . . . . . . . . . . . .... ..... . . . . .
lowQualScore : 0 0 0 555 22 55555 8 0 7 7 0 0 88 8 222222 0 5 77777 22 5 5 4 8 000000000000 8 000 00 0 000 7 99 0 5 99 0 1 6 4 4 11 77 7 5 0 5 22 7 1 3 22 7 0 22 77 0 5 2 8888888 2 2 555 2 2 0 33 2 22 4 2 0 88888 0 555 2 0 5 0 0 0 888 88 5 0000 5 2 8 5 0 2 55 5 0 0 3 3 0 3 0 5 2 2 2 5 2 5 5 3333 33333 7 0 0 5 0
consensus : GGTGTCAGAAGTTAAAGTATATTTGGANTAAATGAATNATGNTGTTCAATGAACT---ATTGTGTTTTAATTAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTAA-CACTC--A--TTTATTGTATGGGTAATGACGCGGACGAAATATTTAAT-TCATTT-AATTTAAGTGAGGA-ACGATAAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGATATAAAGAAAACGTCATA------------TTTGAACGGGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AG-ACTGTCG--ATGCATTTGTGACAGCC-CTACATTCTNTGACG-GAACATTG-CAACTACGG--CGCATTAAAAG-ACGAA-TTGATACGGGACAGAAT--AGTTGTTGGATTAAGAGATGCCAGCATTTCTGAGAAACTGCAGTTGGACGCCGAGTTAACACTCG--AAAAGTCGATAAACACTGCAAGGCAA--AAAG-NGGCAGTTCGAAAA-CAGCAATCAGTTGTCAGAAATCATGCAGTTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGGCCGAGGTCAACGTTTGAGCAGAGTAAGCCACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCGGAGCAGTATC-GAACACGCCAGAAGTACATGCCCAGCAACGCATTCAAAGTGCAGAGGGTGCGGCCGGATGGGTCACTGGGTTAAATG-CTGTC----GGCCA-CGAAA---GTTGACGAAGTAGAG-GATCGAGCCTTCTTTT-GAACNATNGGCTGTGATGAGAAAGCCTGGACAATCAATTTAAAGGTG--AGACAATCGTTTATCAGATTCGAAATCGATACAGGGGCAGATGNAACTGCTATTTCTGAAAANGTGTATAAAACACTGGGTTCACCGCCTTTAATTAAAAGCAAAAAAAACCTTTTTGGGCCAGGTAATAAACCATTGC-ATGTCTTGGGTTNAATCACAGAAACTGTTTCTAGTGATAAATCATCAGCGGTCGAAGATATATATGTCGTNAAAAGCTTAGAACGATGTTTACTGGGCCGACCAGCTATTATAAAGCTTAACCTTATTGAGTTAAAATGCATAGAAGAGGTAATTTCGCTCGAAAACGTAAAATTGAGTC----CAAGTTATTTGGGGAAT-----TAGGTATGTTGAGCGGCGAATACCATATTTCAATCAATGACGGTGCTAAGCCATACGGGTTAACGGTTCCTCGACGCGTACCTATCCCGTTACTCCCCAAGGTCAAANATGAATTAGACAACATNGATGAAAAATCATGNGATTTTTCGTG
Reference ( family-7414 ) : GGTGTCAGAAGTTAAAGTATATTTGGANTAAATGAATNATGNTGTTCAATGAACT---ATTGTGTTTTAATTAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTAA-CACTC--A--TTTATTGTATGGGTAATGACGCGGACGAAATATTTAAT-TCATTT-AATTTAAGTGAGGA-ACGATAAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGATATAAAGAAAACGTCATA------------TTTGAACGGGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AG-ACTGTCG--ATGCATTTGTGACAGCC-CTACATTCTNTGACG-GAACATTG-CAACTACGG--CGCATTAAAAG-ACGAA-TTGATACGGGACAGAAT--AGTTGTTGGATTAAGAGATGCCAGCATTTCTGAGAAACTGCAGTTGGACGCCGAGTTAACACTCG--AAAAGTCGATAAACACTGCAAGGCAA--AAAG-NGGCAGTTCGAAAA-CAGCAATCAGTTGTCAGAAATCATGCAGTTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGGCCGAGGTCAACGTTTGAGCAGAGTAAGCCACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCGGAGCAGTATC-GAACACGCCAGAAGTACATGCCCAGCAACGCATTCAAAGTGCAGAGGGTGCGGCCGGATGGGTCACTGGGTTAAATG-CTGTC----GGCCA-CGAAA---GTTGACGAAGTAGAG-GATCGAGCCTTCTTTT-GAACNATNGGCTGTGATGAGAAAGCCTGGACAATCAATTTAAAGGTG--AGACAATCGTTTATCAGATTCGAAATCGATACAGGGGCAGATGNAACTGCTATTTCTGAAAANGTGTATAAAACACTGGGTTCACCGCCTTTAATTAAAAGCAAAAAAAACCTTTTTGGGCCAGGTAATAAACCATTGC-ATGTCTTGGGTTNAATCACAGAAACTGTTTCTAGTGATAAATCATCAGCGGTCGAAGATATATATGTCGTNAAAAGCTTAGAACGATGTTTACTGGGCCGACCAGCTATTATAAAGCTTAACCTTATTGAGTTAAAATGCATAGAAGAGGTAATTTCGCTCGAAAACGTAAAATTGAGTC----CAAGTTATTTGGGGAAT-----TAGGTATGTTGAGCGGCGAATACCATATTTCAATCAATGACGGTGCTAAGCCATACGGGTTAACGGTTCCTCGACGCGTACCTATCCCGTTACTCCCCAAGGTCAAANATGAATTAGACAACATNGATGAAAAATCATGNGATTTTTCGTG
gi|1 : GATGGCAGAAGTTAAAGTATATTTGGATTAAACGAATCATGCTGTTCAATGAACC---ATTGTGTTTTAATTAAACA
gi|1 : TTAATAA-CACTC--A--TTTATTGTATGGGTAATGATGCGGACGATATATTTAAT-TCATTT-AATTTAAGTGCGGA-ACAATAAAAAAAGTAGATCTACAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGATATAAAGAAT-CGTCATACATGTCCATGTATTTGAACGGGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AG-AATGTCG--ATGCATTTGTGACAGCC-CTACATTGTTTGGCG-GAACATTG-CAATAACGG--TACATTAAAAG-ACGAA-TTGATACGGGACATGAT--AGTTGTTGGATTAAAAGATGACAGCATTTCTGAGAAACTGCAGTTGGACGCCGAGTTGACATTCG--AAAAGTCAATTAACACTGCAAGGCAA--AAAG-AAGCAGTTCGAAAA-CAGCAATCAGTTGTCAGAAATCAT-TAGTTGAAAATACGATGGTATATGTAAAACAAACACAACGCAAGCCGAGGTCA---------------------CCAGTGAATCCTAGAAATAGGTGCTCAAGATGCGGAGCAGTATCGGAACACGCCAGAAGTACATGCC------------CAAAGTGTTGAGGATGCAGCCGGGTGGGTCACTGGGTTAAATG-CTGTCAGAAAGCCA-CGAAA---GTTGACGAAGTAGAG-GAGCGAGCCTTCTTTG-GAACCATTGGCTGTGATGAGAAAGCCTGGATAATCAATTTAAAAATG--AGACAATCATTTATCAGATTTAAAATTGATACAAGGGCAGATGTAACTGCTATTTTTGAAAATGTGTATAAAACACTGGGTTCACCACCTTTAATTAAAAGCAAAAAAAATCTTTTTGGGCCATGTTATAAACCATTGC-ATGTCTTGCATTCAATCACAGAAACTGTTTCCAGTGATAAACTATCAGCGGTCGAAGATATACATGTCGTCAAAAGCTTAGAACGATGTTTACTGGGCCGACCAGCTATTATAAAGTTTAACCTTATTGAGTTAAAAGGCATAGAAGAGGTAATTTTGCTTGTAAACGTAACATTAA-------CAAGTTATTTGAGGAATTCTAGTAGGTATGTTGAGCGGCGAATACCATAGTTCAACCAATGACGGTGCTAAACCATTCAGGTTAATGGTTCCTCAACGCCTACCTATCCCATTACTCCGAAAAGTCAAACATGAATTAGACAACATGGATAAAAAATCATGTGATTTTTCGTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaataacactcatttattgtatgggtaatgatgcggacgatatatttaattcatttaatttaagtgcggaacaataaaaaaagtagatctacaaagatgtatgtgacaaattcaaaagttactttgtgatataaagaatcgtcatacatgtccatgtatttgaacgggccaaattcaatatgaggtgccaggaggagggcgagaatgtcgatgcatttgtgacagccctacattgtttggcggaacattgcaataacggtacattaaaagacgaattgatacgggacatgatagttgttggattaaaagatgacagcatttctgagaaactgcagttggacgccgagttgacattcgaaaagtcaattaacactgcaaggcaaaaagaagcagttcgaaaacagcaatcagttgtcagaaatcattagttgaaaatacgatggtatatgtaaaacaaacacaacgcaagccgaggtcaccagtgaatcctagaaataggtgctcaagatgcggagcagtatcggaacacgccagaagtacatgcccaaagtgttgaggatgcagccgggtgggtcactgggttaaatgctgtcagaaagccacgaaagttgacgaagtagaggagcgagccttctttggaaccattggctgtgatgagaaagcctggataatcaatttaaaaatgagacaatcatttatcagatttaaaattgatacaagggcagatgtaactgctatttttgaaaatgtgtataaaacactgggttcaccacctttaattaaaagcaaaaaaaatctttttgggccatgttataaaccattgcatgtcttgcattcaatcacagaaactgtttccagtgataaactatcagcggtcgaagatatacatgtcgtcaaaagcttagaacgatgtttactgggccgaccagctattataaagtttaaccttattgagttaaaaggcatagaagaggtaattttgcttgtaaacgtaacattaacaagttatttgaggaattctagtaggtatgttgagcggcgaataccatagttcaaccaatgacggtgctaaaccattcaggttaatggttcctcaacgcctacctatcccattactccgaaaagtcaaacatgaattagacaacatggataaaaaatcatgtgatttttcgtg
gi|10 : gatggcagaagttaaagtatatttggattaaacgaatcatgctgttcaatgaaccattgtgttttaattaaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAGTA--CTCTC--A--TTGATTGCATGGATAAAGATGCGGA---AATATTTGAT-TAATTT-AA
gi|11 : ttcaactgcaaaaaaaaaacaaagaaatgttaaaactgattttattttaccatgagttcctacaacttcgtctggaaaaaataattataagaaaccggaagactttgatgaattgtgagatttgaatattctatagtgccactgggactgagtcagaaggaagagggtcggcactATAAGAAGAATA-------AAATATCTTTGCGGCAAT-----TTCA--AATATTATTTTGTGAT-TAAATGAAACTTGATA------------TTTGAATGGGCAATTTTCAATATGAG---TTGT--CAGAG---ATGATCGGAG--AG-ACTGTAG--ATGTATTTGTGACAGCC-CTACATTCTATGAGA-GAACATTG-CAACAATGG--CGCATTAAA
gi|14 : acGTTACATTGTGAGATGTCAGCATTTCTGGGAA-CTGCAGTTGGACGCCGTGCTAACACTCG--AAAAGTCAATTAACACTTCAAGGCAT--AATA-AGGCA
gi|14 : GATACGGAGCAGTATCTAAACACGTCAGAAGTACATGCaacgatacggagcagtatctaaacacgtcagaagtacatgc
gi|16 : gttacattgtgagatgtcagcatttctgggaactgcagttggacgccgtgctaacactcgaaaagtcaattaacacttcaaggcataataaggcaaacTGACAAGGACGAAATATTTAAT-TCATTT-AATTCAAGTTAGGA-A-------AAAAGTA------CAAAACTGTATGTGACAAA-----TTCA--AAAGTTACATTGTGAGAT
gi|16 : AAAAGTACAAAACTG-TATGTGACA-AATTCAAAAGTTACATTGTGAGATGTCAGCATTTCTG-GGAACTGgtcagcatttctgggaactg
gi|17 : tgacaaggacgaaatatttaattcatttaattcaagttaggaaG--AG-ACTGTAG--ATGTATTTGTGACAGCCATTAT-TTCTATGACA-GAACATTG-CAACTATGG--CGCATTAAA
gi|18 : ga--AG-ACTGTAT--ATGTATTTGTGACAGCC-CTACATTCTATGAGA-GAACATAG-CAAATATAG--CGAATTAAA
gi|2 : TGAGTAATGATGCGGACGAAATATTTAAT-TCATTT-AATTTAATTGAGAA-ACAATAAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGAT-TAAAAAAAATGTCACA------------TTTGAACGTGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AG-AATGTCG--ATGCATTTGTGACAGCC-CTACATTCTTTGACG-GAATGCTG-CAATTACGG--TACATAAAAAG-ACGAA-TTAAAACGGGACAGAGT--AGTTGTTGGATTAAGAGATGCCAGCATTTCTGAGAAACTGCAGTTGGACGCCGAATTAACACTCG--AAAGGTCAATAAACACTGCAATGCAA--AAAG-AGGCAGTTCGAAAA-CAGCAATTAGTTGTCAGAAATCATGCAATTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGACCGAG------GTTTGAGCAGAGTAAGCCACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCG-----------GAACACACAAGAAGTACATGCCTAGCAACGCATTCAAAGTGCAGAGGGTACGGCCGGATGAGTCACTGGGTTAAATGTCTGTC----AGCCA-CGAAA---GTTGACGAAGTACCG-GATCGAGCCGTCTCTTGGAACTAGTGGCTGTGATGAGAAAGCCTGGACAATCAATTTAAAGGTG--AGACAATCGTTTATCAGATTCAAAATTTATACAGGGGCAGATGAAACTGCTATTTCTGAAAATGTGTATAAAACGGTTAGTT-ACCACCTTTAATTAAAAGCAAGAAAAACCTTTTTAGGCAAGGCAATAAACCATTGCAATG-CTTGGGTTAAATCACAAAAACTGTTTCTAGTGATAAATCATCAGCGGTCGAAGAAATATATGTCGTGAAAAGTTTAGAACGATTTTTACTGGGCCGATCAGCTATTGTAAAGATTAACCTTATTGAGTTAAAATGCATGGAAGAGGTAATTT----------CGTAAAATTGAGTC----AAAGTTATTTGGGTAAT-----TAGGCATGCTGAGCGGCGAATACCATATTTCAATTATTGACGGTGCTAAGCCATACGGGTTTACGGTTCCTCGACGCGTACCTATCTCGTTACTCCCCAAGGTCAAAAATGAATTAGACAACATTGA-GAAAAATCATGAGATTTTTCGTG
gi|3 : tGGTGTCAGAAGTTAAAGTATATTTGGATTAAATGAATAATGATGTTCAATGAACT---ATTGTGTTTTAATTAAATA
gi|3 : atAGTAAACACTCTCA--TTTATCGTATTGGTAATGATGCGGACGAAATATTTAAT-TCATTT-AATTAAAGTGAGGA-ACAATCAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTAATTTGTGAT-TAAAAGAAACGTCATA------------TTTAAACGGGCCGAATTCAATATGAA---GTGC--CAG-G---AGGAG-GGCG--AG-AATGTCA--ATGCATTTGTGACAGTC-CTACATTCCTTGGCT-GAACATTG-CAATTACGG--TACATTAAAAA-ACGAA-TTAATACGGGACAGAAT--AGTTGTTGAATTAAGAGATGCCAGCATTTCTGAGAAACTGTAGTTGGACGCTGAGTTGATACTCG--AAAAGTCAATAAACGCTGCAAGGCAA--ACAG-TAGCAGTTCGAAAA-CAGCAATCAGTTGTCAGAAACCATGCAATTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGACCGAGGTCAACGTTTGAGCAGAATAAGCCACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCGGATCAGTACCGGAAAACACCAGAAGTACACGCCCAGCAACGCATTTAAAGTGCAGAGGGTGCGGCCGGGTGAGTCATTaaacaaaataatatatatctaaaaatggcacaattccaagtaactcctcttgaaaatttcaattttaaaaggccggaagactttgacaaatggattttgagatttgaacgtttcaaagtggcatcggggcttagtgcgaaggaagaggaacagcaagtaaacactctcatttatcgtattggtaatgatgcggacgaaatatttaattcatttaattaaagtgaggaacaatcaaaaaaatacaaagatgtatgtgacaaattcaaaagttaatttgtgattaaaagaaacgtcatatttaaacgggccgaattcaatatgaagtgccaggaggagggcgagaatgtcaatgcatttgtgacagtcctacattccttggctgaacattgcaattacggtacattaaaaaacgaattaatacgggacagaatagttgttgaattaagagatgccagcatttctgagaaactgtagttggacgctgagttgatactcgaaaagtcaataaacgctgcaaggcaaacagtagcagttcgaaaacagcaatcagttgtcagaaaccatgcaattgaaaatacgatggactatgttaaacaaacacaacgcagaccgaggtcaacgtttgagcagaataagccaccagtgaagcctagaagtcggtgctcaagatgcggatcagtaccggaaaacaccagaagtacacgcccagcaacgcatttaaagtgcagagggtgcggccgggtgagtcattaag
gi|4 : atggtgtcagaagttaaagtatatttggattaaatgaataatgatgttcaatgaactattgtgttttaattaaataaaacaaaataatatatatctaaaaatggcacaattccaagtaactcctcttgaaaatttcaattttaaaaggccggaagactttgacaaatggattttgagatttgaacgtttcaaagtggcatcggggcttagtgcgaaggaagaggaacagcaTGCATT-TGTAACGAGAACATTG-CAACTATGG--TGCATTAAAaag
gi|4 : -GGAG--AG-ACTGTAG--ATGCATTTGTGATAGCC-CTACATTCTATGAGA-GAACATTG-CAACTATGG--CACATTGAAC--ATGGA-TTGTTAAGATACAGTAT--AGTTATTGGTTTAAGAAGTGCCAGTATTTCAGAGAAATTGGGGTTGGATGATGAGTAAATAGTCG--AAAAGTAGATAAACATTGCCGGGCAA--AAGG-TGGTTATTAGAAAAACAACAATCAGTTGTCCAAAATTACGTTGTTGAAAATACACTAGACTATGTCAAACAAAAACAGCAAAAGCTGATAGCAACATTTAAACAGG--AAGTCAACAGTGAAACTTAGAAGTCGGTGCGCAAGATATGGAATAGTATC----------AGAAGTACATGCCCAGCAGTGCATTGAAAGTG-----------ACTGGACGGGCCACTGTGTAAAGTA-CTGTCTTTCGGCCA-CGAAC---GTCGATTAAGTAGAAAGAT------TTCTTGT-GAACAATAGGTTGTAATGAGGAAGCCTGGTCAATTAATTCAAAGGTGATACACAATAATTTATTAAATTCGAAATCGATACAGTGGCAG-CG-----------TCTGTAATAGTTTATATAACACTATGTTCGCTGCCTTTAAATAAAATCAActtggagagactgtagatgcatttgtgatagccctacattctatgagagaacattgcaactatggcacattgaacatggattgttaagatacagtatagttattggtttaagaagtgccagtatttcagagaaattggggttggatgatgagtaaatagtcgaaaagtagataaacattgccgggcaaaaggtggttattagaaaaacaacaatcagttgtccaaaattacgttgttgaaaatacactagactatgtcaaacaaaaacagcaaaagctgatagcaacatttaaacaggaagtcaacagtgaaacttagaagtcggtgcgcaagatatggaatagtatcagaagtacatgcccagcagtgcattgaaagtgactggacgggccactgtgtaaagtactgtctttcggccacgaacgtcgattaagtagaaagatttcttgtgaacaataggttgtaatgaggaagcctggtcaattaattcaaaggtgatacacaataatttattaaattcgaaatcgatacagtggcagcgtctgtaatagtttatataacactatgttcgctgcctttaaataaaatcaa
gi|5 : tgcatttgtaacgagaacattgcaactatggtgcattaaacttTAA-TACCC--AAGTGTATTGTATGGGTAGTGGGACGGATGACAT-TCTGACATCATTTTCATT---GTCAGAAGATGCTAGTAAGGATT------CGGACAC---TGTGACAGAAAGTCTTCATCAA---TATTTTGTGCCA-AAAGATAATGTAATT------------TTTGAACGTTCAAAGTTCA--ATGAGCGAGTGCAGCTG-GCAAATGAA-GGCGTAAGCACATTCGTTACGTATTTGT-ACAG-------AT----TGGCG-GGAAATTATCAATT-CAGAATGCTTC--ACG-ATGAA-CTCATAAGAGACAGAAT--TATCATGGGCTTAAGAGACAATAGACTTTAAGAAAAACTTCAGTTAGACGATGAGCTTACACTTGAAAAAAGCTGTTACACA-GGCAAGACAGCTAAAGCTGTCAAGTC----A-CAGCAGTCTGTTGT
gi|6 : tttgatttcagtaaaccagaaaactggtaaaatggttccagtgctttgatcggtttcggtcagcatctggtttgaaagagaagtgcaagtGATACGGAGCAGTATCTAAACACGTCAGAAGTACATGCAGAGTAACGCACTCAAGGAACAGAAGGCGCAATCGGATGGGTTACTGGGTCAAATG-CTCTC----TGTCAACGAAAAACGTTGACAAAGTAGAG-GATCGAGCCTTCCTTT-GAACGATAGGCTGTGACGAGAAAGCCTGAACAATTAATTTAA---------ACA-------ATCAGATTC-AAATCGATACAGGGGCAGATGCAACTGATATTTCTGAAAAAGTATATAAAACACTGGGTTTACCACCTTTAATTAAAAGCAAAAAAAA-AGTTTTGGGCCAGGTAATAAACCATTGC-ATGTCTTGGGTTTAATCATAGAAACTGTTTCTAG-------TCATCAGCGGTCGAAGATATATAAGTCGTCAATACCTTAGAACGATGTCTACTGGGACGACC----ATTATGAAGCTTAATCTTATTGAGCT-AAATGCAAAGAAGAGGTCATTCCGCTCGAAAACGTAAAAATGAGTtcgaggcaacaaacaggaagaaaacaaaatagacagtg
gi|7 : acATATATGTCGTGAAAAG-TTAAGACAATGTTTACTGGGCCGACCAGCTATTATAAAGCTTAACCTTATTGAGTTAAAATGCATAGAAGTGGTAGTTTCGCTTGAAAACGTAAATTTGAGTCATCCCAAGTTGTTTGGGGAAT-----TAGGTATGTTGGGCGGCAAATACCATATTTCAATCAATGACGCTGTTAAGCCATACAGCTTAACGGTTCATCGACGTGAACCTTTCCTGTTACTCCCCAAGGTTAAA
gi|8 : GGTGTCAGAAGTTAAAGTTTATTTGGAATAAATGAATAATGCTGTTCAATGAACT---ATTGTGTTTTAATTAGATA
gi|9 : ttgtatataaccaaatgcacggtgcatggtaacttgatacacaccatcttgcatgtatcccgagtatataaacctaggccgcactagtagcagggcttttattctgttgtagtttcaaataaacatacatgtatttacagtaactgacacTATTTGGAGTTAATGAATTATGATGCTCAATGTACTATAATTGTTTTTTAATTAGATAaaacaaaattatatata
blockSeqs : T A A ATA AA TCA T C A T C G CA G . T C AAGTC TC T A T . CGA AG A CAA C TA C A TT A C A A T AA GT A A T G TC T AA C CT CT A G T GTCAACG AGT G TA T CA G T T TTTCG A AAC A C G T T AGG AT G ATCG A A A C T C A C A T A T G T A A C C A G ATCC . A T . A
blockSeqs : A A C . A AAG C C . . T . CA A . A G . . A A A . . . . . . . . A . . C A . . . G . A C G . T . C . A . G T AGCAACA AAT T GG C CA G A . A . . . C . A A AGG . C ATAA G A C A A T G . . . T . C C A A C T A G . .
blockSeqs : G T A . . A T C . . A . TG A . G G . . A . A . . . . . . . . A . . C A . . . A . T C G . C . C . A . G C G G A TA C CA A C . T . . . . . G A . . . . . . . . A . A G . . . . . . G
blockSeqs : T T . . . . . T . G G . . A . G . . . . . . . . C . . C T . . . G . A A G . C . T . T . G G G . .
blockSeqs : G . . . . . C . . . . . . . . C . . C T . . . . . . A . . C . . . T . .
blockSeqs : . . A . . C G . . . A
blockSeqs : . . C . . . A . . .
blockSeqs : . . . . .
blockSeqCons : ****** ************
originalCons : GGTGTCAGAAGTTAAAGTATATTTGGANTAAATGAATNATGNTGTTCAATGAACT---ATTGTGTTTTAATTAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTAA-CACTC--A--TTTATTGTATGGGTAATGACGCGGACGAAATATTTAAT-TCATTT-AATTTAAGTGAGGA-ACGATAAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGATATAAAGAAAACGTCATA------------TTTGAACGGGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AG-ACTGTCG--ATGCATTTGTGACAGCC-CTACATTCTNTGACG-GAACATTG-CAACTACGG--CGCATTAAAAG-ACGAA-TTGATACGGGACAGAAT--AGTTGTTGGATTAAGAGATGCCAGCATTTCTGAGAAACTGCAGTTGGACGCCGAGTTAACACTCG--AAAAGTCGATAAACACTGCAAGGCAA--AAAG-NGGCAGTTCGAAAA-CAGCAATCAGTTGTCAGAAATCATGCAGTTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGGCCGAGGTCAACGTTTGAGCAGAGTAAGCCACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCGGAGCAGTATC-GAACACGCCAGAAGTACATGCCCAGCAACGCATTCAAAGTGCAGAGGGTGCGGCCGGATGGGTCACTGGGTTAAATG-CTGTC----GGCCA-CGAAA---GTTGACGAAGTAGAG-GATCGAGCCTTCTTTT-GAACNATNGGCTGTGATGAGAAAGCCTGGACAATCAATTTAAAGGTG--AGACAATCGTTTATCAGATTCGAAATCGATACAGGGGCAGATGNAACTGCTATTTCTGAAAANGTGTATAAAACACTGGGTTCACCGCCTTTAATTAAAAGCAAAAAAAACCTTTTTGGGCCAGGTAATAAACCATTGC-ATGTCTTGGGTTNAATCACAGAAACTGTTTCTAGTGATAAATCATCAGCGGTCGAAGATATATATGTCGTNAAAAGCTTAGAACGATGTTTACTGGGCCGACCAGCTATTATAAAGCTTAACCTTATTGAGTTAAAATGCATAGAAGAGGTAATTTCGCTCGAAAACGTAAAATTGAGTC----CAAGTTATTTGGGGAAT-----TAGGTATGTTGAGCGGCGAATACCATATTTCAATCAATGACGGTGCTAAGCCATACGGGTTAACGGTTCCTCGACGCGTACCTATCCCGTTACTCCCCAAGGTCAAANATGAATTAGACAACATNGATGAAAAATCATGNGATTTTTCGTG
finalCons : GGTGTCAGAAGTTAAAGTATATTTGGANTAAATGAATNATGNTGTTCAATGAACT---ATTGTGTTTTAATTAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTAA-CACTC--A--TTTATTGTATGGGTAATGACGCGGACGAAATATTTAAT-TCATTT-AATTTAAGTGAGGA-ACGATAAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGATATAAAGAAAACGTCATA------------TTTGAACGGGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AG-ACTGTCG--ATGCATTTGTGACAGCC-CTACATTCTNTGACG-GAACATTG-CAACTACGG--CGCATTAAAAG-ACGAA-TTGATACGGGACAGAAT--AGTTGTTGGATTAAGAGATGCCAGCATTTCTGAGAAACTGCAGTTGGACGCCGAGTTAACACTCG--AAAAGTCGATAAACACTGCAAGGCAA--AAAG-NGGCAGTTCGAAAA-CAGCAATCAGTTGTCAGAAATCATGCAGTTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGGCCGAGGTCAACGTTTGAGCAGAGTAAGCCACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCGGAGCAGTATC-GAACACGCCAGAAGTACATGCCCAGCAACGCATTCAAAGTGCAGAGGGTGCGGCCGGATGGGTCACTGGGTTAAATG-CTGTC----GGCCA-CGAAA---GTTGACGAAGTAGAG-GATCGAGCCTTCTTTT-GAACNATNGGCTGTGATGAGAAAGCCTGGACAATCAATTTAAAGGTG--AGACAATCGTTTATCAGATTCGAAATCGATACAGGGGCAGATGNAACTGCTATTTCTGAAAANGTGTATAAAACACTGGGTTCACCGCCTTTAATTAAAAGCAAAAAAAACCTTTTTGGGCCAGGTAATAAACCATTGC-ATGTCTTGGGTTNAATCACAGAAACTGTTTCTAGTGATAAATCATCAGCGGTCGAAGATATATATGTCGTNAAAAGCTTAGAACGATGTTTACTGGGCCGACCAGCTATTATAAAGCTTAACCTTATTGAGTTAAAATGCATAGAAGAGGTAATTTCGCTCGAAAACGTAAAATTGAGTC----CAAGTTATTTGGGGAAT-----TAGGTATGTTGAGCGGCGAATACCATATTTCAATCAATGACGGTGCTAAGCCATACGGGTTAACGGTTCCTCGACGCGTACCTATCCCGTTACTCCCCAAGGTCAAANATGAATTAGACAACATNGATGAAAAATCATGNGATTTTTCGTG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATTGTATATAACTAAATGCACTCAGGCTACATGGTAACATGATGCACACTGTCTTGCGTTATGCTGCTCTGGTCGCAGGGCTTTTATTCTGTTGTAGTCTCAAATAAACATACACATATTTACAGCCACTGACTTGTGATTTATTCAGAGCAATATATATAATGA
Unaligned ( gi|13 ): ACACACTATCTTGCATGTGTCCTGAGAACATAAGCCTATGCTGCACTGGTCGCAGGGCTTTTATTTTGTTGCAGTCTCAAATAAACATACACGTATTTACGGTAACTGACTTATTCAGAACATAATTATTTTATAAAGGCAATA
Unaligned ( gi|15 ): TATATATAACTATTAATGCACTCTACATGGTAACATGATACACACTATCTTGTATGTGTCCTGAGTATATCAACCTATGCCGCTCTGGTCGCAGGTTGTAGTCTCAAATAAACGTACACGTATTTACAGCAAC
Unaligned ( gi|19 ): ACATACAAATCATACTATTAAATGTTTTAGAAATAAA
Alignments
lowQualScore : 111 11 11111 111111 11111 1 444444444444 111 11 111 1111111 111 33 1 44444 1 111 1 1 11 1 1 1 1 2222 33333 1
lowQualScore : 1 1 1 777 33 88888 4 1 6 6 9 8 77 1 999999 1 2 66666 99 3 5 1 0 111111111111 0 444 11 8 444 6 66 5 2 66 5 1 2 4 4 66 77 6 3 1 2 99 1 0 0 99 0 1 99 77 8 2 1 4444444 0 0 666 0 0 1 00 8 44 1 1 0 66666 0 777 0 0 2 0 1 1 333 33 2 7777 0 3 0 2 1 0 00 6 2 2 3 7 1 7 1 6 3 0 3 6 4 3 2 8888 33333 0 1 1 5 1
lowQualScore : . . . ... .. ..... . . . . . . .. . ...... . . ..... .. . . . . ............ . ... .. . ... . .. . . .. . . . . . .. .. . . . . .. . . . .. . . .. .. . . . ....... . . ... . . . .. . .. . . . ..... . ... . . . . . . ... .. . .... . . . . . . .. . . . . . . . . . . . . . . . . .... ..... . . . . .
lowQualScore : 0 0 0 555 22 55555 8 0 7 7 0 0 88 8 222222 0 5 77777 22 5 5 4 8 000000000000 8 000 00 0 000 7 99 0 5 99 0 1 6 4 4 11 77 7 5 0 5 22 7 1 3 22 7 0 22 77 0 5 2 8888888 2 2 555 2 2 0 33 2 22 4 2 0 88888 0 555 2 0 5 0 0 0 888 88 5 0000 5 2 8 5 0 2 55 5 0 0 3 3 0 3 0 5 2 2 2 5 2 5 5 3333 33333 7 0 0 5 0
consensus : GGTGTCAGAAGTTAAAGTATATTTGGANTAAATGAATNATGNTGTTCAATGAACT---ATTGTGTTTTAATTAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTAA-CACTC--A--TTTATTGTATGGGTAATGACGCGGACGAAATATTTAAT-TCATTT-AATTTAAGTGAGGA-ACGATAAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGATATAAAGAAAACGTCATA------------TTTGAACGGGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AG-ACTGTCG--ATGCATTTGTGACAGCC-CTACATTCTNTGACG-GAACATTG-CAACTACGG--CGCATTAAAAG-ACGAA-TTGATACGGGACAGAAT--AGTTGTTGGATTAAGAGATGCCAGCATTTCTGAGAAACTGCAGTTGGACGCCGAGTTAACACTCG--AAAAGTCGATAAACACTGCAAGGCAA--AAAG-NGGCAGTTCGAAAA-CAGCAATCAGTTGTCAGAAATCATGCAGTTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGGCCGAGGTCAACGTTTGAGCAGAGTAAGCCACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCGGAGCAGTATC-GAACACGCCAGAAGTACATGCCCAGCAACGCATTCAAAGTGCAGAGGGTGCGGCCGGATGGGTCACTGGGTTAAATG-CTGTC----GGCCA-CGAAA---GTTGACGAAGTAGAG-GATCGAGCCTTCTTTT-GAACNATNGGCTGTGATGAGAAAGCCTGGACAATCAATTTAAAGGTG--AGACAATCGTTTATCAGATTCGAAATCGATACAGGGGCAGATGNAACTGCTATTTCTGAAAANGTGTATAAAACACTGGGTTCACCGCCTTTAATTAAAAGCAAAAAAAACCTTTTTGGGCCAGGTAATAAACCATTGC-ATGTCTTGGGTTNAATCACAGAAACTGTTTCTAGTGATAAATCATCAGCGGTCGAAGATATATATGTCGTNAAAAGCTTAGAACGATGTTTACTGGGCCGACCAGCTATTATAAAGCTTAACCTTATTGAGTTAAAATGCATAGAAGAGGTAATTTCGCTCGAAAACGTAAAATTGAGTC----CAAGTTATTTGGGGAAT-----TAGGTATGTTGAGCGGCGAATACCATATTTCAATCAATGACGGTGCTAAGCCATACGGGTTAACGGTTCCTCGACGCGTACCTATCCCGTTACTCCCCAAGGTCAAANATGAATTAGACAACATNGATGAAAAATCATGNGATTTTTCGTG
Reference ( family-7414 ) : GGTGTCAGAAGTTAAAGTATATTTGGANTAAATGAATNATGNTGTTCAATGAACT---ATTGTGTTTTAATTAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTAA-CACTC--A--TTTATTGTATGGGTAATGACGCGGACGAAATATTTAAT-TCATTT-AATTTAAGTGAGGA-ACGATAAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGATATAAAGAAAACGTCATA------------TTTGAACGGGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AG-ACTGTCG--ATGCATTTGTGACAGCC-CTACATTCTNTGACG-GAACATTG-CAACTACGG--CGCATTAAAAG-ACGAA-TTGATACGGGACAGAAT--AGTTGTTGGATTAAGAGATGCCAGCATTTCTGAGAAACTGCAGTTGGACGCCGAGTTAACACTCG--AAAAGTCGATAAACACTGCAAGGCAA--AAAG-NGGCAGTTCGAAAA-CAGCAATCAGTTGTCAGAAATCATGCAGTTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGGCCGAGGTCAACGTTTGAGCAGAGTAAGCCACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCGGAGCAGTATC-GAACACGCCAGAAGTACATGCCCAGCAACGCATTCAAAGTGCAGAGGGTGCGGCCGGATGGGTCACTGGGTTAAATG-CTGTC----GGCCA-CGAAA---GTTGACGAAGTAGAG-GATCGAGCCTTCTTTT-GAACNATNGGCTGTGATGAGAAAGCCTGGACAATCAATTTAAAGGTG--AGACAATCGTTTATCAGATTCGAAATCGATACAGGGGCAGATGNAACTGCTATTTCTGAAAANGTGTATAAAACACTGGGTTCACCGCCTTTAATTAAAAGCAAAAAAAACCTTTTTGGGCCAGGTAATAAACCATTGC-ATGTCTTGGGTTNAATCACAGAAACTGTTTCTAGTGATAAATCATCAGCGGTCGAAGATATATATGTCGTNAAAAGCTTAGAACGATGTTTACTGGGCCGACCAGCTATTATAAAGCTTAACCTTATTGAGTTAAAATGCATAGAAGAGGTAATTTCGCTCGAAAACGTAAAATTGAGTC----CAAGTTATTTGGGGAAT-----TAGGTATGTTGAGCGGCGAATACCATATTTCAATCAATGACGGTGCTAAGCCATACGGGTTAACGGTTCCTCGACGCGTACCTATCCCGTTACTCCCCAAGGTCAAANATGAATTAGACAACATNGATGAAAAATCATGNGATTTTTCGTG
gi|1 : GATGGCAGAAGTTAAAGTATATTTGGATTAAACGAATCATGCTGTTCAATGAACC---ATTGTGTTTTAATTAAACA
gi|1 : TTAATAA-CACTC--A--TTTATTGTATGGGTAATGATGCGGACGATATATTTAAT-TCATTT-AATTTAAGTGCGGA-ACAATAAAAAAAGTAGATCTACAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGATATAAAGAAT-CGTCATACATGTCCATGTATTTGAACGGGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AG-AATGTCG--ATGCATTTGTGACAGCC-CTACATTGTTTGGCG-GAACATTG-CAATAACGG--TACATTAAAAG-ACGAA-TTGATACGGGACATGAT--AGTTGTTGGATTAAAAGATGACAGCATTTCTGAGAAACTGCAGTTGGACGCCGAGTTGACATTCG--AAAAGTCAATTAACACTGCAAGGCAA--AAAG-AAGCAGTTCGAAAA-CAGCAATCAGTTGTCAGAAATCAT-TAGTTGAAAATACGATGGTATATGTAAAACAAACACAACGCAAGCCGAGGTCA---------------------CCAGTGAATCCTAGAAATAGGTGCTCAAGATGCGGAGCAGTATCGGAACACGCCAGAAGTACATGCC------------CAAAGTGTTGAGGATGCAGCCGGGTGGGTCACTGGGTTAAATG-CTGTCAGAAAGCCA-CGAAA---GTTGACGAAGTAGAG-GAGCGAGCCTTCTTTG-GAACCATTGGCTGTGATGAGAAAGCCTGGATAATCAATTTAAAAATG--AGACAATCATTTATCAGATTTAAAATTGATACAAGGGCAGATGTAACTGCTATTTTTGAAAATGTGTATAAAACACTGGGTTCACCACCTTTAATTAAAAGCAAAAAAAATCTTTTTGGGCCATGTTATAAACCATTGC-ATGTCTTGCATTCAATCACAGAAACTGTTTCCAGTGATAAACTATCAGCGGTCGAAGATATACATGTCGTCAAAAGCTTAGAACGATGTTTACTGGGCCGACCAGCTATTATAAAGTTTAACCTTATTGAGTTAAAAGGCATAGAAGAGGTAATTTTGCTTGTAAACGTAACATTAA-------CAAGTTATTTGAGGAATTCTAGTAGGTATGTTGAGCGGCGAATACCATAGTTCAACCAATGACGGTGCTAAACCATTCAGGTTAATGGTTCCTCAACGCCTACCTATCCCATTACTCCGAAAAGTCAAACATGAATTAGACAACATGGATAAAAAATCATGTGATTTTTCGTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaataacactcatttattgtatgggtaatgatgcggacgatatatttaattcatttaatttaagtgcggaacaataaaaaaagtagatctacaaagatgtatgtgacaaattcaaaagttactttgtgatataaagaatcgtcatacatgtccatgtatttgaacgggccaaattcaatatgaggtgccaggaggagggcgagaatgtcgatgcatttgtgacagccctacattgtttggcggaacattgcaataacggtacattaaaagacgaattgatacgggacatgatagttgttggattaaaagatgacagcatttctgagaaactgcagttggacgccgagttgacattcgaaaagtcaattaacactgcaaggcaaaaagaagcagttcgaaaacagcaatcagttgtcagaaatcattagttgaaaatacgatggtatatgtaaaacaaacacaacgcaagccgaggtcaccagtgaatcctagaaataggtgctcaagatgcggagcagtatcggaacacgccagaagtacatgcccaaagtgttgaggatgcagccgggtgggtcactgggttaaatgctgtcagaaagccacgaaagttgacgaagtagaggagcgagccttctttggaaccattggctgtgatgagaaagcctggataatcaatttaaaaatgagacaatcatttatcagatttaaaattgatacaagggcagatgtaactgctatttttgaaaatgtgtataaaacactgggttcaccacctttaattaaaagcaaaaaaaatctttttgggccatgttataaaccattgcatgtcttgcattcaatcacagaaactgtttccagtgataaactatcagcggtcgaagatatacatgtcgtcaaaagcttagaacgatgtttactgggccgaccagctattataaagtttaaccttattgagttaaaaggcatagaagaggtaattttgcttgtaaacgtaacattaacaagttatttgaggaattctagtaggtatgttgagcggcgaataccatagttcaaccaatgacggtgctaaaccattcaggttaatggttcctcaacgcctacctatcccattactccgaaaagtcaaacatgaattagacaacatggataaaaaatcatgtgatttttcgtg
gi|10 : gatggcagaagttaaagtatatttggattaaacgaatcatgctgttcaatgaaccattgtgttttaattaaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAGTA--CTCTC--A--TTGATTGCATGGATAAAGATGCGGA---AATATTTGAT-TAATTT-AA
gi|11 : ttcaactgcaaaaaaaaaacaaagaaatgttaaaactgattttattttaccatgagttcctacaacttcgtctggaaaaaataattataagaaaccggaagactttgatgaattgtgagatttgaatattctatagtgccactgggactgagtcagaaggaagagggtcggcactATAAGAAGAATA-------AAATATCTTTGCGGCAAT-----TTCA--AATATTATTTTGTGAT-TAAATGAAACTTGATA------------TTTGAATGGGCAATTTTCAATATGAG---TTGT--CAGAG---ATGATCGGAG--AG-ACTGTAG--ATGTATTTGTGACAGCC-CTACATTCTATGAGA-GAACATTG-CAACAATGG--CGCATTAAA
gi|14 : acGTTACATTGTGAGATGTCAGCATTTCTGGGAA-CTGCAGTTGGACGCCGTGCTAACACTCG--AAAAGTCAATTAACACTTCAAGGCAT--AATA-AGGCA
gi|14 : GATACGGAGCAGTATCTAAACACGTCAGAAGTACATGCaacgatacggagcagtatctaaacacgtcagaagtacatgc
gi|16 : gttacattgtgagatgtcagcatttctgggaactgcagttggacgccgtgctaacactcgaaaagtcaattaacacttcaaggcataataaggcaaacTGACAAGGACGAAATATTTAAT-TCATTT-AATTCAAGTTAGGA-A-------AAAAGTA------CAAAACTGTATGTGACAAA-----TTCA--AAAGTTACATTGTGAGAT
gi|16 : AAAAGTACAAAACTG-TATGTGACA-AATTCAAAAGTTACATTGTGAGATGTCAGCATTTCTG-GGAACTGgtcagcatttctgggaactg
gi|17 : tgacaaggacgaaatatttaattcatttaattcaagttaggaaG--AG-ACTGTAG--ATGTATTTGTGACAGCCATTAT-TTCTATGACA-GAACATTG-CAACTATGG--CGCATTAAA
gi|18 : ga--AG-ACTGTAT--ATGTATTTGTGACAGCC-CTACATTCTATGAGA-GAACATAG-CAAATATAG--CGAATTAAA
gi|2 : TGAGTAATGATGCGGACGAAATATTTAAT-TCATTT-AATTTAATTGAGAA-ACAATAAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTACTTTGTGAT-TAAAAAAAATGTCACA------------TTTGAACGTGCCAAATTCAATATGAG---GTGC--CAG-G---AGGAG-GGCG--AG-AATGTCG--ATGCATTTGTGACAGCC-CTACATTCTTTGACG-GAATGCTG-CAATTACGG--TACATAAAAAG-ACGAA-TTAAAACGGGACAGAGT--AGTTGTTGGATTAAGAGATGCCAGCATTTCTGAGAAACTGCAGTTGGACGCCGAATTAACACTCG--AAAGGTCAATAAACACTGCAATGCAA--AAAG-AGGCAGTTCGAAAA-CAGCAATTAGTTGTCAGAAATCATGCAATTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGACCGAG------GTTTGAGCAGAGTAAGCCACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCG-----------GAACACACAAGAAGTACATGCCTAGCAACGCATTCAAAGTGCAGAGGGTACGGCCGGATGAGTCACTGGGTTAAATGTCTGTC----AGCCA-CGAAA---GTTGACGAAGTACCG-GATCGAGCCGTCTCTTGGAACTAGTGGCTGTGATGAGAAAGCCTGGACAATCAATTTAAAGGTG--AGACAATCGTTTATCAGATTCAAAATTTATACAGGGGCAGATGAAACTGCTATTTCTGAAAATGTGTATAAAACGGTTAGTT-ACCACCTTTAATTAAAAGCAAGAAAAACCTTTTTAGGCAAGGCAATAAACCATTGCAATG-CTTGGGTTAAATCACAAAAACTGTTTCTAGTGATAAATCATCAGCGGTCGAAGAAATATATGTCGTGAAAAGTTTAGAACGATTTTTACTGGGCCGATCAGCTATTGTAAAGATTAACCTTATTGAGTTAAAATGCATGGAAGAGGTAATTT----------CGTAAAATTGAGTC----AAAGTTATTTGGGTAAT-----TAGGCATGCTGAGCGGCGAATACCATATTTCAATTATTGACGGTGCTAAGCCATACGGGTTTACGGTTCCTCGACGCGTACCTATCTCGTTACTCCCCAAGGTCAAAAATGAATTAGACAACATTGA-GAAAAATCATGAGATTTTTCGTG
gi|3 : tGGTGTCAGAAGTTAAAGTATATTTGGATTAAATGAATAATGATGTTCAATGAACT---ATTGTGTTTTAATTAAATA
gi|3 : atAGTAAACACTCTCA--TTTATCGTATTGGTAATGATGCGGACGAAATATTTAAT-TCATTT-AATTAAAGTGAGGA-ACAATCAAAAAAATA------CAAAGATGTATGTGACAAA-----TTCA--AAAGTTAATTTGTGAT-TAAAAGAAACGTCATA------------TTTAAACGGGCCGAATTCAATATGAA---GTGC--CAG-G---AGGAG-GGCG--AG-AATGTCA--ATGCATTTGTGACAGTC-CTACATTCCTTGGCT-GAACATTG-CAATTACGG--TACATTAAAAA-ACGAA-TTAATACGGGACAGAAT--AGTTGTTGAATTAAGAGATGCCAGCATTTCTGAGAAACTGTAGTTGGACGCTGAGTTGATACTCG--AAAAGTCAATAAACGCTGCAAGGCAA--ACAG-TAGCAGTTCGAAAA-CAGCAATCAGTTGTCAGAAACCATGCAATTGAAAATACGATGGACTATGTTAAACAAACACAACGCAGACCGAGGTCAACGTTTGAGCAGAATAAGCCACCAGTGAAGCCTAGAAGTCGGTGCTCAAGATGCGGATCAGTACCGGAAAACACCAGAAGTACACGCCCAGCAACGCATTTAAAGTGCAGAGGGTGCGGCCGGGTGAGTCATTaaacaaaataatatatatctaaaaatggcacaattccaagtaactcctcttgaaaatttcaattttaaaaggccggaagactttgacaaatggattttgagatttgaacgtttcaaagtggcatcggggcttagtgcgaaggaagaggaacagcaagtaaacactctcatttatcgtattggtaatgatgcggacgaaatatttaattcatttaattaaagtgaggaacaatcaaaaaaatacaaagatgtatgtgacaaattcaaaagttaatttgtgattaaaagaaacgtcatatttaaacgggccgaattcaatatgaagtgccaggaggagggcgagaatgtcaatgcatttgtgacagtcctacattccttggctgaacattgcaattacggtacattaaaaaacgaattaatacgggacagaatagttgttgaattaagagatgccagcatttctgagaaactgtagttggacgctgagttgatactcgaaaagtcaataaacgctgcaaggcaaacagtagcagttcgaaaacagcaatcagttgtcagaaaccatgcaattgaaaatacgatggactatgttaaacaaacacaacgcagaccgaggtcaacgtttgagcagaataagccaccagtgaagcctagaagtcggtgctcaagatgcggatcagtaccggaaaacaccagaagtacacgcccagcaacgcatttaaagtgcagagggtgcggccgggtgagtcattaag
gi|4 : atggtgtcagaagttaaagtatatttggattaaatgaataatgatgttcaatgaactattgtgttttaattaaataaaacaaaataatatatatctaaaaatggcacaattccaagtaactcctcttgaaaatttcaattttaaaaggccggaagactttgacaaatggattttgagatttgaacgtttcaaagtggcatcggggcttagtgcgaaggaagaggaacagcaTGCATT-TGTAACGAGAACATTG-CAACTATGG--TGCATTAAAaag
gi|4 : -GGAG--AG-ACTGTAG--ATGCATTTGTGATAGCC-CTACATTCTATGAGA-GAACATTG-CAACTATGG--CACATTGAAC--ATGGA-TTGTTAAGATACAGTAT--AGTTATTGGTTTAAGAAGTGCCAGTATTTCAGAGAAATTGGGGTTGGATGATGAGTAAATAGTCG--AAAAGTAGATAAACATTGCCGGGCAA--AAGG-TGGTTATTAGAAAAACAACAATCAGTTGTCCAAAATTACGTTGTTGAAAATACACTAGACTATGTCAAACAAAAACAGCAAAAGCTGATAGCAACATTTAAACAGG--AAGTCAACAGTGAAACTTAGAAGTCGGTGCGCAAGATATGGAATAGTATC----------AGAAGTACATGCCCAGCAGTGCATTGAAAGTG-----------ACTGGACGGGCCACTGTGTAAAGTA-CTGTCTTTCGGCCA-CGAAC---GTCGATTAAGTAGAAAGAT------TTCTTGT-GAACAATAGGTTGTAATGAGGAAGCCTGGTCAATTAATTCAAAGGTGATACACAATAATTTATTAAATTCGAAATCGATACAGTGGCAG-CG-----------TCTGTAATAGTTTATATAACACTATGTTCGCTGCCTTTAAATAAAATCAActtggagagactgtagatgcatttgtgatagccctacattctatgagagaacattgcaactatggcacattgaacatggattgttaagatacagtatagttattggtttaagaagtgccagtatttcagagaaattggggttggatgatgagtaaatagtcgaaaagtagataaacattgccgggcaaaaggtggttattagaaaaacaacaatcagttgtccaaaattacgttgttgaaaatacactagactatgtcaaacaaaaacagcaaaagctgatagcaacatttaaacaggaagtcaacagtgaaacttagaagtcggtgcgcaagatatggaatagtatcagaagtacatgcccagcagtgcattgaaagtgactggacgggccactgtgtaaagtactgtctttcggccacgaacgtcgattaagtagaaagatttcttgtgaacaataggttgtaatgaggaagcctggtcaattaattcaaaggtgatacacaataatttattaaattcgaaatcgatacagtggcagcgtctgtaatagtttatataacactatgttcgctgcctttaaataaaatcaa
gi|5 : tgcatttgtaacgagaacattgcaactatggtgcattaaacttTAA-TACCC--AAGTGTATTGTATGGGTAGTGGGACGGATGACAT-TCTGACATCATTTTCATT---GTCAGAAGATGCTAGTAAGGATT------CGGACAC---TGTGACAGAAAGTCTTCATCAA---TATTTTGTGCCA-AAAGATAATGTAATT------------TTTGAACGTTCAAAGTTCA--ATGAGCGAGTGCAGCTG-GCAAATGAA-GGCGTAAGCACATTCGTTACGTATTTGT-ACAG-------AT----TGGCG-GGAAATTATCAATT-CAGAATGCTTC--ACG-ATGAA-CTCATAAGAGACAGAAT--TATCATGGGCTTAAGAGACAATAGACTTTAAGAAAAACTTCAGTTAGACGATGAGCTTACACTTGAAAAAAGCTGTTACACA-GGCAAGACAGCTAAAGCTGTCAAGTC----A-CAGCAGTCTGTTGT
gi|6 : tttgatttcagtaaaccagaaaactggtaaaatggttccagtgctttgatcggtttcggtcagcatctggtttgaaagagaagtgcaagtGATACGGAGCAGTATCTAAACACGTCAGAAGTACATGCAGAGTAACGCACTCAAGGAACAGAAGGCGCAATCGGATGGGTTACTGGGTCAAATG-CTCTC----TGTCAACGAAAAACGTTGACAAAGTAGAG-GATCGAGCCTTCCTTT-GAACGATAGGCTGTGACGAGAAAGCCTGAACAATTAATTTAA---------ACA-------ATCAGATTC-AAATCGATACAGGGGCAGATGCAACTGATATTTCTGAAAAAGTATATAAAACACTGGGTTTACCACCTTTAATTAAAAGCAAAAAAAA-AGTTTTGGGCCAGGTAATAAACCATTGC-ATGTCTTGGGTTTAATCATAGAAACTGTTTCTAG-------TCATCAGCGGTCGAAGATATATAAGTCGTCAATACCTTAGAACGATGTCTACTGGGACGACC----ATTATGAAGCTTAATCTTATTGAGCT-AAATGCAAAGAAGAGGTCATTCCGCTCGAAAACGTAAAAATGAGTtcgaggcaacaaacaggaagaaaacaaaatagacagtg
gi|7 : acATATATGTCGTGAAAAG-TTAAGACAATGTTTACTGGGCCGACCAGCTATTATAAAGCTTAACCTTATTGAGTTAAAATGCATAGAAGTGGTAGTTTCGCTTGAAAACGTAAATTTGAGTCATCCCAAGTTGTTTGGGGAAT-----TAGGTATGTTGGGCGGCAAATACCATATTTCAATCAATGACGCTGTTAAGCCATACAGCTTAACGGTTCATCGACGTGAACCTTTCCTGTTACTCCCCAAGGTTAAA
gi|8 : GGTGTCAGAAGTTAAAGTTTATTTGGAATAAATGAATAATGCTGTTCAATGAACT---ATTGTGTTTTAATTAGATA
gi|9 : ttgtatataaccaaatgcacggtgcatggtaacttgatacacaccatcttgcatgtatcccgagtatataaacctaggccgcactagtagcagggcttttattctgttgtagtttcaaataaacatacatgtatttacagtaactgacacTATTTGGAGTTAATGAATTATGATGCTCAATGTACTATAATTGTTTTTTAATTAGATAaaacaaaattatatata
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): ATTGTATATAACTAAATGCACTCAGGCTACATGGTAACATGATGCACACTGTCTTGCGTTATGCTGCTCTGGTCGCAGGGCTTTTATTCTGTTGTAGTCTCAAATAAACATACACATATTTACAGCCACTGACTTGTGATTTATTCAGAGCAATATATATAATGA
Unaligned ( gi|13 ): ACACACTATCTTGCATGTGTCCTGAGAACATAAGCCTATGCTGCACTGGTCGCAGGGCTTTTATTTTGTTGCAGTCTCAAATAAACATACACGTATTTACGGTAACTGACTTATTCAGAACATAATTATTTTATAAAGGCAATA
Unaligned ( gi|15 ): TATATATAACTATTAATGCACTCTACATGGTAACATGATACACACTATCTTGTATGTGTCCTGAGTATATCAACCTATGCCGCTCTGGTCGCAGGTTGTAGTCTCAAATAAACGTACACGTATTTACAGCAAC
Unaligned ( gi|19 ): ACATACAAATCATACTATTAAATGTTTTAGAAATAAA