lowQualScore : 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 1 22 2222 1 3333 1 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111 111 11 1 111 55555555555555555555555555555 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 222 3333 1 33 22 888888888888888 1 11
lowQualScore : 6 5 11 6 6 6666 5 6 3333 5 6 6 6 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 6666 77 4 444 3 55 3 3 66 6666 33 7 9 1 3 44 3 555 99 0 222 00000000000000000000000000000 6 6 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6 777 6 5555 7 00 11 555555555555555 5 6 22
lowQualScore : . . .. . . .... . . .... . . . . ................................................................................................................................................................................................................................ . .... .. . ... . .. . . .. .... .. . . . . .. . ... .. . ... ............................. . . ................................................................................................................................................................................................. . ... . .... . .. .. ............... . . ..
lowQualScore : 0 0 00 0 0 0000 0 0 0000 0 0 0 0 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 0000 33 7 000 6 00 6 6 55 1111 99 2 8 5 1 66 3 888 00 5 555 00000000000000000000000000000 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 000 0 0000 0 00 00 000000000000000 0 0 00
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTGCTAGGTAAGCAGAGTTTTAGCCTTTTAATACAATTTCGGAATGTATTTCCATGCCTA------AGTATACCAAA-GTATATTTA-AAACAG--GA-----GGGATTATGGTG---TAGTACCGTCCACGCAGACAGATACTTATTTTGAGTTT-GGGAA-A-GGAAA-A-----AAGG-GGCTA-NGTTNGANNA--ATATGGT----TG--TAGAAGN---AC-CGAACN---T--TTC-CTGT-A-AAA-C--G-TCA---CAATAC-CGC-GGCCCGTGAGTTGATGCGTTGTCATG---CAACAGGG-AT--A-G-GTGCTTTAAGCCAGTGTGTGGG----CGACGTTTGA--AACATTGTTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCATNTGNATAGCNNGGCCATGGATACTGGCGATGAATATTGCATAAAATACCTTCTTA-TACTTA--AACTTCGTTTGGAAATATCTGAACGGGTCACA-TTTTTCGCAGTCAAAATTCGATTTTGTTTTTAGTT---------------AAAAAATTAACCTATCTCTCATCACCAGT-ATAA---CATAAGCCT--TTTTGTTG-TACAATGGATATAGTTTGGGAAGT--------GGTTT-------GGCATAACTTTACTCAATTGTCAACAAATCCGGTGGCCATCTTGCATTTAT-CGTTCTAACTTTTAGGTT
Reference ( gi|1 ) : TATTAAATTATTTACGCGTCATACCCTCAAAGTAATCCCCCTTGTTACGTACACAAAGTTTCAAACGTTTAATCCAGTTCTTAAAGGCATCTCCATACTCATTTTCAGGTATACCCAGCATACACTGATAAACAGCGGACCCCAGGGCCTGTCGGGACCTA-TACCGTCTAC-CAGCTAAATGTTTTTTTTCAGTTTAGGGAACA-AGAAATAGTCACACGG-GGCTA-GGTCTGGGGA--ATATGGT-GCATG--TGGAAGA---ACTCGAACC--CT--TTCCTTGTTAAAAAACGAGGTCA---CAATA---GCAGACTTATGCGCAGGGGCATTGTCATG---CAACAGGG-AT--A-G-GTGCTTTAAGCTAGTGTGTGGG----CGACGTTTGA--AACATTGTTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCAGTTGCATAATAGGACCACGTATATCAAAGA-AAATA--ACAAACATTGCTTTCTTAGCACTGATCAATTT--TTTGGCAAT-TGTGGGGCGGCGACAGTTTTTGGTAGCCCA---T--ATTTTGTTGTTAATTTTTCTGGTAGGCTCGAAAAAGTGTACCTATGTCTCATCTCCAGTAATAATGTCACAAAACTGCTTTCTTTGATATTTTGGAAACATTTTAAGCAGTTTTCTCGCGGTTTCAAATCGGACATGCTTTTGCTTGTCTGACAACAAATGAGGTATCCATATAGCTGTAATACG-TCTCATTTTTAAATT
gi|3 : CCCTTGCTAGGTAAGCAGAGTTTTAGCCTTTTAATACAATTTCGGAATGTATTTCCATGCCTA------AGTATACCAAA-GTATATTTA-AAACAG--GA-----GGGATTATGGTG---TAGTACCGTCCACGCAG---AAT-------TTGACTT--GGAAACA-GGAAATA-----ACGG-G-CCA-GTTCGGATGA--ATATGG------G--TTGAAGGGTTACACGAACC---T--CTCGTTTCTA----------CTA---CAAGA---GCAGGCCCATGAGCTGATGCTTTGTCATGTAACAACACAGTATCCG-G-GCGGTCTCGACT------TGGA----CGACGTT-----AGTATT--TTTTTT--GTT---------------------TAAG-----TACCGGTTACTGG-TTTGCCATTAGGCA---CGGCTCTATGAATAGCAGGACCATGGATACTGGCAA-AAATA--ACA
gi|4 : -TATCGTC----CAGACAGATACTTATTG--AGTCTAGGG------GAAA-------AAGG-AGCTA-CGTTAAGATA--ATATGGTTGGATG---AGAAGC---AC---AACA--ATAGTTACCTGT-ATAAAAT-AGTTCATGACAATGTTCGC-GA--TGTGTGTTGAGGCGTTGTCATG---CGACAAGA-GT--ATA-GTGCGATGACCT-GTGCTTGGA----CGGCGTTTAATGAACAta
gi|2 : aaaatatttacctcattctgacacgcgcaactttaatatcataatccaatactttttcataatctccatctgcgtatactgtgcagacacgaatattgaagatccgacatgtttccgttgcaccaatTTAAGTTTTGGGAAGAGAGAAA-AGTGACAAGACGGCTATAGTTCGAGAATAATAGGGT----TGACTAGAAAA------TGAATTTACA--TTC--TGT--AAAATCTCAGTCA---TAATACGTGC---TTTGTGAGTGGGTACATTGACATT---GAA-AAGA-AC--A-GCGTACTTTATACATGT-TGTGGGACTACGGCGTTTGT--AGTA--GTTTGTC-AAGTTTTTTCAG---TTTGCCGTTTTTAAAATACTTACATGTCAC----TGTTCTACCTAATAATACCACCGTTTGTATAACTTGGTCA---ATATTGGGGATGAATATTGCATAAAATACCTTCTTA-TACTTA--AACTTCGTTTGGAAATATCTGAACGGGTCACA-TTTTTCGCAGTCAAAATTCGATTTTGTTTTTAGTT---------------AAAAAATTAACCTATCTCTCATCACCAGT-ATAA---CATAAGCCT--TTTTGTTG-TACAATGGATATAGTTTGGGAAGT--------GGTTT-------GGCATAACTTTACTCAATTGTCAACAAATCCGGTGGCCATCTTGCATTTAT-CGTTCTAACTTTTAGGTTatatattcagttgtgc
gi|5 : ---CAACAGGG-AT--A-G-GTGCTTTAAGCCAGTGTGTGGG----CGACGTTTGA--AACATTGTTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCAttattcaaaatgtcatgaactcctgctaaagataatttttgttattggcgctaattgtcttaccgaat
gi|9 : ---CAACAGGG-AT--A-G-GTGCTTTAAGCCAGTGTGTGGG----CGATGTTTGA--AACATTGTTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTTGTA---CAA
gi|6 : AACAGGG-AT--A-G-GTGCTTTAAGCCAGGGTGTGGG----CGAAGTTTGA--AACATTGTTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCA
gi|7 : AACAGGG-AT--A-G-GTGCTTTAAGCCAGTGTGTGGG----CGACGTTTGA--AACATTATTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGT-TTTTCTATTTGGTA---CAACC
gi|8 : AACAGGG-AT--A-G-GTGCTTTAAGCCAGTGTGTGGG----CGACGTTTGA--AACATTGTTTTTT-AAGTGTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCTAAGA-TTTTCTATTTGGTA---CAACC
gi|10 : AACAGGG-AT--A-G-GTGCTTTAAGCCAGTGTGTGGG----CGACGTTTG----------TTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATGAAATA--AACCAGTCACAGA-TTTTCTATTTGGTA---CAACC
gi|15 : AACAGGG-AT--A-G-GTGCTTTAAGCCAGTGTGTGGG----CGACG-----------------TTTTAAGTTTCTTCAACACTTTTTC-TTTAT
gi|16 : AACAGGG-AT--A-G-GTGCTTTAAGCCAGTGTGTGGG----CGACGTTTGA--AACATTGTTTTTT
gi|11 : TGCTTTAAGCGAGGGTGTGGG----CAACGTTTGA--AACATTGTTTTCT-AAGTTTCT--AA-ACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCA
gi|12 : GTGTGTGGG----CGACGTTTGA--AACATTGTTTTTT-AAATTTCTTCAACACTTTTTC-TTTATAAAACA--TACCAGTCACAGA-TTTTCTATTTGGTA---TAACCA
gi|13 : GTGTGTGGG----CGACGTTTGA--AACATTGTTTTTT-AAGT--------------------TATAAAATA--TACCAGTCACATATTTTTCTATTTGGTA---CAACCA
gi|14 : TTAAGTTTCTTCAACACTTTTTC-TTTA-AAAATA--TTCCAATCATAGA-TTTTCTATTTGGTA---CAACCA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111
lowQualScore : 555555 2 2 555555555 333 1 2222222222222 111 2 22222 5555555555555555 11 11 11111 333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 1 111 2 22 11 1 2 333333 222222222222222 2 333 22 2 99999999999999999999 2 1
lowQualScore : 2 3 2 3 3 2 3 777777 3 0 3 0 888888888 3 2 3 555 5 8888888888888 222 2 0 55555 4 7777777777777777 11 1 22 33 88888 222222222222222222222222222222222222222222222222222222222222222222222222222222222 3 3 3 4 3 3 5555 444 2 33 33 2 6 8 2 2 44 3 555 1 1 0 22 0 777 88 0 6 555 3 4 0 3 77 77 3 5 2 55 2 0 2 3 000000 3 555555555555555 77 2 4 0 555 2 77 2 0 88 4 2 3 00000000000000000000 3 4 4 55 2 2 4 77 4 0 5 3
lowQualScore : . . . . . . . ...... . . . . ......... . . . ... . ............. ... . . ..... . ................ .. . .. .. ..... ................................................................................. . . . . . . .... ... . .. .. . . . . . .. . ... . . . .. . ... .. . . ... . . . . .. .. . . . .. . . . . ...... . ............... .. . . . ... . .. . . .. . . . .................... . . . .. . . . .. . . . .
lowQualScore : 5 0 5 0 0 5 0 555555 0 0 0 0 555555555 0 5 0 000 0 3333333333333 888 5 0 22222 0 5555555555555555 00 0 00 88 55555 555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 5 0 2 3 3 7777 777 7 77 77 9 1 5 5 9 22 1 444 0 0 7 00 7 333 00 7 0 777 0 0 0 0 55 55 0 5 5 00 5 0 5 0 000000 0 000000000000000 00 5 0 0 000 5 55 5 0 00 0 5 0 55555555555555555555 0 0 0 00 5 5 0 00 0 0 5 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTGCTANGTACGCAGAGTTTCAGNCNTTTAATNCAGTTCCGGAANGCATCTCCATGCCCATTTTCAGGTATACCNAGCGTACACTNATAAACAGCGGACCCCAGGGNCTGTNGNGACCTAGTACCGTCCAC-CAGACAGATGCTTATTTTGAGTTT-GGGAACGAGAAANAA------G------G--GGCTAN-GTCNGGGGA--ATATGG-T---TGG-T-AGAAGNAC-CGAAC----C-T---TTC--CT-GT---A-AAA------C----G---TCACAATA-C-GC-GG-CTTGTGNGCGGGNGCGTTGTCATGCAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCATTTGNATAACAGGACCACG-ATATTGGCGA-GAATAT-ACATANANTGCCTTCTTAGCACTNATCAACTTCGTTTGGNAATATNTGGGNNGGCGACAGTTTTTNGCAGCCNAAATTCGATTTTGTTNTTAGTTTTTCTGGTAGGCTCGAAAAAGTNNACCTATNTCTCATCNCCAGTAATAATGTCACAAGNCTGCTTTCGTTGATACNNTGGANACANTTTGGGNAGTTTTCTCGCGGTTTCAAATCGGGCATGNCTTTGCTCGNCTGNCAACAAATNNGGTGNCCATNTNGCNNTNATACGTTCTNACTTTTAGGTT
Reference ( family-735 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTGCTAGGTAAGCAGAGTTTTAGCCTTTTAATACAATTTCGGAATGTATTTCCATGCCTA------AGTATACCAAA-GTATATTTA-AAACAG--GA-----GGGATTATGGTG---TAGTACCGTCCACGCAGACAGATACTTATTTTGAGTTT-GGGAA-AGGAAAAAA------G------G--GGCTAN-GTTNGANNA--ATATGG-T---TG--T-AGAAGNAC-CGAAC----N-T---TTC--CT-GT---A-AAA------C----G---TCACAATA-CCGC-GG-CCCGTGAGTTGATGCGTTGTCATGCAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCATNTGNATAGCNNGGCCATGGATACTGGCGATGAATATTGCATAAAATACCTTCTTA-TACTTA--AACTTCGTTTGGAAATATCTGAACGGGTCACA-TTTTTCGCAGTCAAAATTCGATTTTGTTTTTAGTT---------------AAAAAATTAACCTATCTCTCATCACCAGT-ATAA---CATAAGCCT--TTTTGTTG-TACAATGGATATAGTTTGGGAAGT--------GGTTT-------GGCATAACTTTACTCAATTGTCAACAAATCCGGTGGCCATCTTGCATTTAT-CGTTCTAACTTTTAGGTT
gi|1 : CCCTTGTTACGTACACAAAGTTTCAAACGTTTAATCCAGTTCTTAAAGGCATCTCCATACTCATTTTCAGGTATACCCAGCATACACTGATAAACAGCGGACCCCAGGGCCTGTCGGGACCTA-TACCGTCTAC-CAGCTAAATGTTTTTTTTCAGTTTAGGGAACAAGAAATAGTCACACG------G--GGCTAG-GTCTGGGGA--ATATGG-TGCATG--T-GGAAGAACTCGAAC----CCT---TTC--CTTGTTAAA-AAA------C----GAGGTCACAATA---GC-AGACTTATGCGCAGGGGCATTGTCATGCAACAGGGATA-G-GTGCTTTAAGCTAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCAGTTGCATAATAGGACCACGTATAT---CAAAGAAAATAACAAACATTGCTTTCTTAGCACTGATCAATTT--TTTGGCAAT-TGTGGGGCGGCGACAGTTTTTGGTAGCCCA---T--ATTTTGTTGTTAATTTTTCTGGTAGGCTCGAAAAAGTGTACCTATGTCTCATCTCCAGTAATAATGTCACAAAACTGCTTTCTTTGATATTTTGGAAACATTTTAAGCAGTTTTCTCGCGGTTTCAAATCGGACATGCTTTTGCTTGTCTGACAACAAATGAGGTATCCATATAGCTGTAATACG-TCTCATTTTTAAATT
gi|10 : tattaaattatttacgcgtcataccctcaaagtaatccAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTG-------------TTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATGAAATA--AACCAGTCACAGA-TTTTCTATTTGGTA---CAACC
gi|11 : TGCTTTAAGCGAGGGTGTGGG----CAA---CG-TTTGA--A--ACATT-GTTTTCT-AAGTTTCT--AA-ACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCA
gi|12 : GTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT-AAATTTCTTCAACACTTTTTC-TTTATAAAACA--TACCAGTCACAGA-TTTTCTATTTGGTA---TAACCA
gi|13 : GTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT-AAGTT--------------------ATAAAATA--TACCAGTCACATATTTTTCTATTTGGTA---CAACCA
gi|14 : TTAAGTTTCTTCAACACTTTTTC-TTTA-AAAATA--TTCCAATCATAGA-TTTTCTATTTGGTA---CAACCA
gi|15 : cagtactttgaAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG---------------------TTTTAAGTTTCTTCAACACTTTTTC-TTTAT
gi|16 : AACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT
gi|2 : TTAAGTTTTGGGAA-GAGAGAAAA------GTGACAAGACGGCTATAGTTCGAGAATAATAGGG-T---TGACT-AGAA--AA-TGAAT----T-TACATTC---T-GT---A-AAA------TCTCAG---TCATAATA-C-GT-GC-TTTGTGAGTGGGTACATTGACATTGAA-AAGAACA-GCGTACTTTATACATGT-TGTGGGACTACGG---CG-TTTGT--A--GTA---GTTTGTC-AAGTTTTTTCAG---TTTGCCGTTTTTAAAATACTTACATGTCAC----TGTTCTACCTAATAATACCACCGTTTGTATAACTTGGTCA---ATATTGGGGATGAATATTGCATAAAATACCTTCTTA-TACTTA--AACTTCGTTTGGAAATATCTGAACGGGTCACA-TTTTTCGCAGTCAAAATTCGATTTTGTTTTTAGTT---------------AAAAAATTAACCTATCTCTCATCACCAGT-ATAA---CATAAGCCT--TTTTGTTG-TACAATGGATATAGTTTGGGAAGT--------GGTTT-------GGCATAACTTTACTCAATTGTCAACAAATCCGGTGGCCATCTTGCATTTAT-CGTTCTAACTTTTAGGTT
gi|3 : CCCTTGCTAGGTAAGCAGAGTTTTAGCCTTTTAATACAATTTCGGAATGTATTTCCATGCCTA------AGTATACCAAA-GTATATTTA-AAACAG--GA-----GGGATTATGGTG---TAGTACCGTCCACGCAGA---------ATTT-GA-CTT-GGAAACAGGAAATAA------C------G--GGCCAG-TTCGGATGA--ATATGGGT---TG--A-AGGGTTACACGAAC----C-T---CTCGTTT-CT---A-------------------CTACAAGA---GCAGG-CCCATGAGCTGATGCTTTGTCATGTAACA---ACA--------------CAGTATCCGGG----CGGTCTCGACTTGG--ACGACGTTAGTATTTTT---TTTGTTTAA--------------------G--TACCGGTTACTGG-TTTGCCATTAGGCA---CGGCTCTATGAATAGCAGGACCATGGATACTGGCAA-AAATA--ACATAttattcaaaatgtcatgaactcctgctaaagataatttttgttattggcgctaattgtcttaccgaat
gi|4 : TATCGTCCA----GACAGATACTTATT--GAGTCT-AGG-----GGAAAAA------G------G--AGCTAC-GTTAAGATA--ATATGG-T---TGGATGAGAAGCAC---AACAATAG-T---TAC--CT-GT---ATAAAATAGTTC----A---TGACAATGTTCGC-GA---TGTGTGTTGAGGCGTTGTCATGCGACAAGAGTATA-GTGCGATGA-CCTGTGCTTGGA----CGG---CG-TTTAATGA--ACA
gi|5 : aaaatatttacctcattctgacacgcgcaactttaatatcataatccaatactttttcataatctccatctgcgtatactgtgcagacacgaatattgaagatccgacatgtttccgttgcaccaatCAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCAatatattcagttgtgc
gi|6 : AACAGGGATA-G-GTGCTTTAAGCCAGGGTGTGGG----CGA---AG-TTTGA--A--ACATT-GTTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCA
gi|7 : AACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-ATTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGT-TTTTCTATTTGGTA---CAACC
gi|8 : AACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT-AAGTGTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCTAAGA-TTTTCTATTTGGTA---CAACC
gi|9 : CAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---TG-TTTGA--A--ACATT-GTTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTTGTA---CAA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333 1 1 11 22222 11111111 33333 111 111 2 11111 5555555555555555 11 11 333333333333333333333333333333333333333333333333333333333333333333333 33333333333 3333 11 33 1 11 11 1 1 22222222 555555555555555 1 222 11 1 33333333 3333333 1 1
lowQualScore : 1 2 1 1 1 2 1 000000 1 5 1 5 77 55555 1 1 77777777 11111 444 222 2 0 44444 1 7777777777777777 11 1 00 33 999999999999999999999999999999999999999999999999999999999999999999999 0 44444444444 1 6 1 4 3 3 5555 444 2 33 33 2 6 8 2 2 44 3 555 1 7777 6 44 77 1 1 5 1 88 77 1 5 1 22 2 5 1 22222222 1 333333333333333 22 1 1 5 111 1 77 2 5 22 1 1 1 44444444 2222222 1 1 1 22 1 1 1 22 1 5 5 1
lowQualScore : . . . . . . . ...... . . . . .. ..... . . ........ ..... ... ... . . ..... . ................ .. . .. .. ..................................................................... . ........... . . . . . . .... ... . .. .. . . . . . .. . ... . .... . .. .. . . . . .. .. . . . .. . . . ........ . ............... .. . . . ... . .. . . .. . . . ........ ....... . . . .. . . . .. . . . .
lowQualScore : 0 5 0 0 0 5 0 000000 0 0 0 5 55 55555 0 0 33333333 00000 777 888 5 0 00000 0 5555555555555555 00 0 55 88 555555555555555555555555555555555555555555555555555555555555555555555 2 22222222222 0 5 0 2 3 3 7777 777 7 77 77 9 1 5 5 9 22 1 444 0 0000 7 00 00 0 0 0 0 00 55 0 5 0 00 5 0 0 00000000 0 555555555555555 00 0 0 5 000 0 55 5 5 00 0 0 0 55555555 0000000 0 0 0 00 0 0 0 00 0 5 5 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTGCTANGTACGCAGAGTTTCAGNCNTTTAATNCAGTTCCGGAANGCATCTCCATGCCCATTTTCAGGTATACCNAGCGTACACTNATAAACAGCGGACCCCAGGGNCCGTCGCGACCTA-TACCGTCCAC--GNCAGATGCTTATTTTGAGTTT-GGGAACGAGAAANAA------G------G--GGCTAN-GTCNGGGGA--ATATGGTTG---G-T-AGAAGN---AC-CGAACC----T---TTC--CT-GT---A--AAA-----C----G---TCACAATA--CGC-GG-CTTGTGNGCGGGNGCGTTGTCATGCAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCATTTGNATAACAGGACCAC-G-ATATCGGNGA-AAATA--ACATANANTGCCTTCTTAGCACTNATCAACTTCGTTTGGNAATATNTGGGNNGGCGACAGTTTTTNGCAGCCNAAATTCGATTTTGTTNTTAGTTTTTCTGGTAGGCTCGAAAAAGTNNACCTATNTCTCATCNCCAGTAATAATGTCACAAGNCTGCTTTCGTTGATACNNTGGANACANTTTGGGNAGTTTTCTCGCGGTTTCAAATCGGGCATGNCTTTGCTCGNCTGNCAACAAATNNGGTGNCCATNTNGCNNTNATACGTTCTNACTTTTAGGTT
Reference ( family-735 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTGCTANGTACGCAGAGTTTCAGNCNTTTAATNCAGTTCCGGAANGCATCTCCATGCCCATTTTCAGGTATACCNAGCGTACACTNATAAACAGCGGACCCCAGGGNCTGTNGNGACCTAGTACCGTCCACCAGACAGATGCTTATTTTGAGTTT-GGGAACGAGAAANAA------G------G--GGCTAN-GTCNGGGGA--ATATGGTTG---G-T-AGAAGN---AC-CGAACC----T---TTC--CT-GT---A--AAA-----C----G---TCACAATA--CGC-GG-CTTGTGNGCGGGNGCGTTGTCATGCAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCATTTGNATAACAGGACCAC-G-ATATTGGCGA-GAATAT-ACATANANTGCCTTCTTAGCACTNATCAACTTCGTTTGGNAATATNTGGGNNGGCGACAGTTTTTNGCAGCCNAAATTCGATTTTGTTNTTAGTTTTTCTGGTAGGCTCGAAAAAGTNNACCTATNTCTCATCNCCAGTAATAATGTCACAAGNCTGCTTTCGTTGATACNNTGGANACANTTTGGGNAGTTTTCTCGCGGTTTCAAATCGGGCATGNCTTTGCTCGNCTGNCAACAAATNNGGTGNCCATNTNGCNNTNATACGTTCTNACTTTTAGGTT
gi|1 : CCCTTGTTACGTACACAAAGTTTCAAACGTTTAATCCAGTTCTTAAAGGCATCTCCATACTCATTTTCAGGTATACCCAGCATACACTGATAAACAGCGGACCCCAGGGCCTGTCGGGACCTA-TACCGTCTACCAGCTAAATGTTTTTTTTCAGTTTAGGGAACAAGAAATAGTCACACG------G--GGCTAG-GTCTGGGGA--ATATGGT-GCATG-T-GGAAGA---ACTCGAACCC---T---TTC--CTTGTTAAA--AAA-----C----GAGGTCACAATA---GC-AGACTTATGCGCAGGGGCATTGTCATGCAACAGGGATA-G-GTGCTTTAAGCTAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCAGTTGCATAATAGGACCAC-GTATATCAAAGA-AAATA--ACAAACATTGCTTTCTTAGCACTGATCAATTT--TTTGGCAAT-TGTGGGGCGGCGACAGTTTTTGGTAGCCC--AT---ATTTTGTTGTTAATTTTTCTGGTAGGCTCGAAAAAGTGTACCTATGTCTCATCTCCAGTAATAATGTCACAAAACTGCTTTCTTTGATATTTTGGAAACATTTTAAGCAGTTTTCTCGCGGTTTCAAATCGGACATGCTTTTGCTTGTCTGACAACAAATGAGGTATCCATATAGCTGTAATACG-TCTCATTTTTAAATT
gi|10 : tattaaattatttacgcgtcataccctcaaagtaatccAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTG-------------TTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATGAAATA--AACCAGTCACAGA-TTTTCTATTTGGTA---CAACC
gi|11 : TGCTTTAAGCGAGGGTGTGGG----CAA---CG-TTTGA--A--ACATT-GTTTTCT-AAGTTTCT--AA-ACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCA
gi|12 : GTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT-AAATTTCTTCAACACTTTTTC-TTTATAAAACA--TACCAGTCACAGA-TTTTCTATTTGGTA---TAACCA
gi|13 : GTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT-AAGTT--------------------ATAAAATA--TACCAGTCACATATTTTTCTATTTGGTA---CAACCA
gi|14 : TTAAGTTTCTTCAACACTTTTTC-TTTA-AAAATA--TTCCAATCATAGA-TTTTCTATTTGGTA---CAACCA
gi|15 : cagtactttgaAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG---------------------TTTTAAGTTTCTTCAACACTTTTTC-TTTAT
gi|16 : AACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT
gi|2 : TTAAGTTTTGGGAA-GAGAGAAAA------GTGACAAGACGGCTATAGTTCGAGAATAATAGGGTTG---ACT-AGAA-----AA-TGAATT----TACATTC---T-GT---A--AAA-----TCTCAG---TCATAATA--CGT-GC-TTTGTGAGTGGGTACATTGACATTGAA-AAGAACA-GCGTACTTTATACATGT-TGTGGGACTACGG---CG-TTTGT--A--GTA---GTTTGTC-AAGTTTTTTCAG---TTTGCCGTTTTTAAAATACTTACATGTCAC----TGTTCTACCTAATAATACCACCGTTTGTATAACTTGGTCA----ATATTGGGGATGAATATTGCATAAAATACCTTCTTA-TACTTA--AACTTCGTTTGGAAATATCTGAACGGGTCACA-TTTTTCGCAGTCAAAATTCGATTTTGTTTTTAGTT---------------AAAAAATTAACCTATCTCTCATCACCAGTA-TAA---CATAAGCCT--TTTTGTTG-TACAATGGATATAGTTTGGGAAGT--------GGTTT-------GGCATAACTTTACTCAATTGTCAACAAATCCGGTGGCCATCTTGCATTTAT-CGTTCTAACTTTTAGGTT
gi|3 : CCCTTGCTAGGTAAGCAGAGTTTTAGCCTTTTAATACAATTTCGGAATGTATTTCCATGCCTA------AGTATACCAAA-GTATATTTA-AAACAG--GA-----GGGATTATGGTG---TAGTACCGTCCAC---GCAGA-----ATTT-GA-CTT-GGAAACAGGAAATAA------C------G--GGCCAG-TTCGGATGA--ATATGG------G-T-TGAAGGGTTACACGAACC----T---CTCGTTT-CT---A-------------------CTACAAGA---GCAGG-CCCATGAGCTGATGCTTTGTCATGTAACA---ACA--------------CAGTATCCGGG----CGGTCTCGACTTGG--ACGACGTTAGTATTTTT---TTTGTTTAA--------------------G--TACCGGTTACTGG-TTTGCCATTAGGCA---CGGCTCTATGAATAGCAGGACCATGG-ATACTGGCAA-AAATA--ACATAttattcaaaatgtcatgaactcctgctaaagataatttttgttattggcgctaattgtcttaccgaat
gi|4 : CCGTTGC-ACCAATTATCGTCCA---GACAGATACTTATT--GAGTCT-AGG-----GGAAAAA------G------G--AGCTAC-GTTAAGATA--ATATGGTTG---GATGAGAAGC---AC---AACAATAGT---TAC--CT-GT---ATAAAATAGTTC----A---TGACAATGTTCGC-GA---TGTGTGTTGAGGCGTTGTCATGCGACAAGAGTATA-GTGCGATGA-CCTGTGCTTGGA----CGG---CG-TTTAATGA--ACA
gi|5 : aaaatatttacctcattctgacacgcgcaactttaatatcataatccaatactttttcataatctccatctgcgtatactgtgcagacacgaatattgaagatccgacatgtttCAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCAatatattcagttgtgc
gi|6 : AACAGGGATA-G-GTGCTTTAAGCCAGGGTGTGGG----CGA---AG-TTTGA--A--ACATT-GTTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCA
gi|7 : AACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-ATTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGT-TTTTCTATTTGGTA---CAACC
gi|8 : AACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT-AAGTGTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCTAAGA-TTTTCTATTTGGTA---CAACC
gi|9 : CAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---TG-TTTGA--A--ACATT-GTTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTTGTA---CAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333 1 1 33333333 2222222222 22222 1111111 2 11111 5555555555555555 11 11 3333333333333333333333333333333333333333333333333333333333333333333 33333333333 3333 1 11 1 11 11 1 1 22222222 555555555555555 1 222 11 1 33333333 3333333 1 1
lowQualScore : 1 2 1 1 1 2 1 000000 1 5 1 5 33333333 1 0 3 2222222222 99999 9999999 3 0 2 0 44444 1 7777777777777777 11 1 00 33 2 9 0000000000000000000000000000000000000000000000000000000000000000000 0 44444444444 1 6 1 4 3 3 5555 444 2 33 33 2 6 8 2 2 44 3 555 1 7777 0 1 3 88 1 1 5 1 88 77 1 5 1 22 2 5 1 22222222 1 333333333333333 22 1 1 5 111 1 77 2 5 22 1 1 1 44444444 2222222 1 1 1 22 1 1 1 22 1 5 5 1
lowQualScore : . . . . . . . ...... . . . . ........ . . . .......... ..... ....... . . . . ..... . ................ .. . .. .. . . ................................................................... . ........... . . . . . . .... ... . .. .. . . . . . .. . ... . .... . . . .. . . . . .. .. . . . .. . . . ........ . ............... .. . . . ... . .. . . .. . . . ........ ....... . . . .. . . . .. . . . .
lowQualScore : 0 5 0 0 0 5 0 000000 0 0 0 5 00000000 0 7 7 7777777777 00000 7777777 2 2 5 0 00000 0 5555555555555555 00 0 55 88 5 2 8888888888888888888888888888888888888888888888888888888888888888888 2 22222222222 0 5 0 2 3 3 7777 777 7 77 77 9 1 5 5 9 22 1 444 0 0000 7 0 3 33 0 0 0 0 00 55 0 5 0 00 5 0 0 00000000 0 555555555555555 00 0 0 5 000 0 55 5 5 00 0 0 0 55555555 0000000 0 0 0 00 0 0 0 00 0 5 5 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTGCTANGTACGCAGAGTTTCAGNCNTTTAATNCAGTTCCGGAANGCATCTCCATGCCCATTTTCAGGTATACCNAGCGTACACTNATAAACAGCGGACCCCAGGGNCCGTCGCGACCTA-T-ACCGTCCAC--G-CAGATGCTTATTTTGAGTTT-GGGAACGAGAAANAA------G------G--GGCTAN-GTCNGGGGA--ATATGGTTG---G-T-AGAAG---NAC-CGAAC----C-T---TTC--CT-GT---A-AAA------C----G---TCACAATA--CGC-GG-CTTGTGNGCGGGNGCGTTGTCATGCAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCATTTGNATAACAGGACCAC-G-ATATCGGNGA-AAATA--ACATANANTGCCTTCTTAGCACTNATCAACTTCGTTTGGNAATATNTGGGNNGGCGACAGTTTTTNGCAGCCNAAATTCGATTTTGTTNTTAGTTTTTCTGGTAGGCTCGAAAAAGTNNACCTATNTCTCATCNCCAGTAATAATGTCACAAGNCTGCTTTCGTTGATACNNTGGANACANTTTGGGNAGTTTTCTCGCGGTTTCAAATCGGGCATGNCTTTGCTCGNCTGNCAACAAATNNGGTGNCCATNTNGCNNTNATACGTTCTNACTTTTAGGTT
Reference ( family-735 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTGCTANGTACGCAGAGTTTCAGNCNTTTAATNCAGTTCCGGAANGCATCTCCATGCCCATTTTCAGGTATACCNAGCGTACACTNATAAACAGCGGACCCCAGGGNCCGTCGCGACCTA-T-ACCGTCCAC--GNCAGATGCTTATTTTGAGTTT-GGGAACGAGAAANAA------G------G--GGCTAN-GTCNGGGGA--ATATGGTTG---G-T-AGAAG---NAC-CGAAC----C-T---TTC--CT-GT---A-AAA------C----G---TCACAATA--CGC-GG-CTTGTGNGCGGGNGCGTTGTCATGCAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCATTTGNATAACAGGACCAC-G-ATATCGGNGA-AAATA--ACATANANTGCCTTCTTAGCACTNATCAACTTCGTTTGGNAATATNTGGGNNGGCGACAGTTTTTNGCAGCCNAAATTCGATTTTGTTNTTAGTTTTTCTGGTAGGCTCGAAAAAGTNNACCTATNTCTCATCNCCAGTAATAATGTCACAAGNCTGCTTTCGTTGATACNNTGGANACANTTTGGGNAGTTTTCTCGCGGTTTCAAATCGGGCATGNCTTTGCTCGNCTGNCAACAAATNNGGTGNCCATNTNGCNNTNATACGTTCTNACTTTTAGGTT
gi|1 : CCCTTGTTACGTACACAAAGTTTCAAACGTTTAATCCAGTTCTTAAAGGCATCTCCATACTCATTTTCAGGTATACCCAGCATACACTGATAAACAGCGGACCCCAGGGCCTGTCGGGACCTA-T-ACCGTCTACCAGCTAAATGTTTTTTTTCAGTTTAGGGAACAAGAAATAGTCACACG------G--GGCTAG-GTCTGGGGA--ATATGGT-GCATG-T-GGAAG---AACTCGAAC----CCT---TTC--CTTGTTAAA-AAA------C----GAGGTCACAATA---GC-AGACTTATGCGCAGGGGCATTGTCATGCAACAGGGATA-G-GTGCTTTAAGCTAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCAGTTGCATAATAGGACCAC-GTATATCAAAGA-AAATA--ACAAACATTGCTTTCTTAGCACTGATCAATTT--TTTGGCAAT-TGTGGGGCGGCGACAGTTTTTGGTAGCCC--AT---ATTTTGTTGTTAATTTTTCTGGTAGGCTCGAAAAAGTGTACCTATGTCTCATCTCCAGTAATAATGTCACAAAACTGCTTTCTTTGATATTTTGGAAACATTTTAAGCAGTTTTCTCGCGGTTTCAAATCGGACATGCTTTTGCTTGTCTGACAACAAATGAGGTATCCATATAGCTGTAATACG-TCTCATTTTTAAATT
gi|10 : tattaaattatttacgcgtcataccctcaaagtaatccAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTG-------------TTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATGAAATA--AACCAGTCACAGA-TTTTCTATTTGGTA---CAACC
gi|11 : TGCTTTAAGCGAGGGTGTGGG----CAA---CG-TTTGA--A--ACATT-GTTTTCT-AAGTTTCT--AA-ACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCA
gi|12 : GTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT-AAATTTCTTCAACACTTTTTC-TTTATAAAACA--TACCAGTCACAGA-TTTTCTATTTGGTA---TAACCA
gi|13 : GTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT-AAGTT--------------------ATAAAATA--TACCAGTCACATATTTTTCTATTTGGTA---CAACCA
gi|14 : TTAAGTTTCTTCAACACTTTTTC-TTTA-AAAATA--TTCCAATCATAGA-TTTTCTATTTGGTA---CAACCA
gi|15 : cagtactttgaAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG---------------------TTTTAAGTTTCTTCAACACTTTTTC-TTTAT
gi|16 : AACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT
gi|2 : TTAAGTTTTGGGAA-GAGAGAAAA------GTGACAAGACGGCTATAGTTCGAGAATAATAGGGTTG---ACT-AGAA-----AA-TGAAT----T-TACATTC---T-GT---A-AAA------TCTCAG---TCATAATA--CGT-GC-TTTGTGAGTGGGTACATTGACATTGAA-AAGAACA-GCGTACTTTATACATGT-TGTGGGACTACGG---CG-TTTGT--A--GTA---GTTTGTC-AAGTTTTTTCAG---TTTGCCGTTTTTAAAATACTTACATGTCAC----TGTTCTACCTAATAATACCACCGTTTGTATAACTTGGTCA----ATATTGGGGATGAATATTGCATAAAATACCTTCTTA-TACTTA--AACTTCGTTTGGAAATATCTGAACGGGTCACA-TTTTTCGCAGTCAAAATTCGATTTTGTTTTTAGTT---------------AAAAAATTAACCTATCTCTCATCACCAGTA-TAA---CATAAGCCT--TTTTGTTG-TACAATGGATATAGTTTGGGAAGT--------GGTTT-------GGCATAACTTTACTCAATTGTCAACAAATCCGGTGGCCATCTTGCATTTAT-CGTTCTAACTTTTAGGTT
gi|3 : CCCTTGCTAGGTAAGCAGAGTTTTAGCCTTTTAATACAATTTCGGAATGTATTTCCATGCC------TAAGTATACCAAA-GTATATTTA-AAACAG-G------AGGGATTATGGTG---TAGT-ACCGTCCAC--G-CAGA-----A-TTTGA-CTT-GGAAACAGGAAATAA------C------G--GGCCAG-TTCGGATGA--ATATG---G---G-T-TGAAGGGTTACACGAAC----C-T---CTCGTTT-CT---A-------------------CTACAAGA---GCAGG-CCCATGAGCTGATGCTTTGTCATGTAACA---ACA--------------CAGTATCCGGG----CGGTCTCGACTTGG--ACGACGTTAGTATTTTT---TTTGTTTAA--------------------G--TACCGGTTACTGG-TTTGCCATTAGGCA---CGGCTCTATGAATAGCAGGACCATGG-ATACTGGCAA-AAATA--ACATAttattcaaaatgtcatgaactcctgctaaagataatttttgttattggcgctaattgtcttaccgaat
gi|4 : CCGTTGC-ACCAA-TTATCGTCCA---GACAGATACTTATT--GAGTCT-AGG-----GGAAAAA------G------G--AGCTAC-GTTAAGATA--ATATGGTTG---GATGAGAAG---CAC---AACAATAG-T---TAC--CT-GT---ATAAAATAGTTC----A---TGACAATGTTCGC-GA---TGTGTGTTGAGGCGTTGTCATGCGACAAGAGTATA-GTGCGATGA-CCTGTGCTTGGA----CGG---CG-TTTAATGA--ACA
gi|5 : aaaatatttacctcattctgacacgcgcaactttaatatcataatccaatactttttcataatctccatctgcgtatactgtgcagacacgaatattgaagatccgacatgtttCAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCAatatattcagttgtgc
gi|6 : AACAGGGATA-G-GTGCTTTAAGCCAGGGTGTGGG----CGA---AG-TTTGA--A--ACATT-GTTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCA
gi|7 : AACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-ATTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGT-TTTTCTATTTGGTA---CAACC
gi|8 : AACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT-AAGTGTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCTAAGA-TTTTCTATTTGGTA---CAACC
gi|9 : CAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---TG-TTTGA--A--ACATT-GTTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTTGTA---CAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333 1 1 33333333 2222222222 11 1 1111111 2 11111 5555555555555555 11 11 3333333333333333333333333333333333333333333333333333333333333333333 33333333333 3333 1 11 1 11 11 1 1 22222222 555555555555555 1 222 11 1 33333333 3333333 1 1
lowQualScore : 1 2 1 1 1 2 1 000000 1 5 1 5 33333333 1 0 3 2222222222 88 3 9999999 3 0 2 0 44444 1 7777777777777777 11 1 00 33 2 9 0000000000000000000000000000000000000000000000000000000000000000000 0 44444444444 1 6 1 4 3 3 5555 444 2 33 33 2 6 8 2 2 44 3 555 1 7777 0 1 3 88 1 1 5 1 88 77 1 5 1 22 2 5 1 22222222 1 333333333333333 22 1 1 5 111 1 77 2 5 22 1 1 1 44444444 2222222 1 1 1 22 1 1 1 22 1 5 5 1
lowQualScore : . . . . . . . ...... . . . . ........ . . . .......... .. . ....... . . . . ..... . ................ .. . .. .. . . ................................................................... . ........... . . . . . . .... ... . .. .. . . . . . .. . ... . .... . . . .. . . . . .. .. . . . .. . . . ........ . ............... .. . . . ... . .. . . .. . . . ........ ....... . . . .. . . . .. . . . .
lowQualScore : 0 5 0 0 0 5 0 000000 0 0 0 5 00000000 0 7 7 7777777777 33 3 7777777 2 2 5 0 00000 0 5555555555555555 00 0 55 88 5 2 8888888888888888888888888888888888888888888888888888888888888888888 2 22222222222 0 5 0 2 3 3 7777 777 7 77 77 9 1 5 5 9 22 1 444 0 0000 7 0 3 33 0 0 0 0 00 55 0 5 0 00 5 0 0 00000000 0 555555555555555 00 0 0 5 000 0 55 5 5 00 0 0 0 55555555 0000000 0 0 0 00 0 0 0 00 0 5 5 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTGCTANGTACGCAGAGTTTCAGNCNTTTAATNCAGTTCCGGAANGCATCTCCATGCCCATTTTCAGGTATACCNAGCGTACACTNATAAACAGCGGACCCCAGGGNCCGTCGCGACCTA-T-ACCGTCCAC--GC-AGATGCTTATTTTGAGTTT-GGGAACGAGAAANAA------G------G--GGCTAN-GTCNGGGGA--ATATGGTTG---G-T-AGAAG---NAC-CGAAC----C-T---TTC--CT-GT---A-AAA------C----G---TCACAATA--CGC-GG-CTTGTGNGCGGGNGCGTTGTCATGCAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCATTTGNATAACAGGACCAC-G-ATATCGGNGA-AAATA--ACATANANTGCCTTCTTAGCACTNATCAACTTCGTTTGGNAATATNTGGGNNGGCGACAGTTTTTNGCAGCCNAAATTCGATTTTGTTNTTAGTTTTTCTGGTAGGCTCGAAAAAGTNNACCTATNTCTCATCNCCAGTAATAATGTCACAAGNCTGCTTTCGTTGATACNNTGGANACANTTTGGGNAGTTTTCTCGCGGTTTCAAATCGGGCATGNCTTTGCTCGNCTGNCAACAAATNNGGTGNCCATNTNGCNNTNATACGTTCTNACTTTTAGGTT
Reference ( family-735 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTGCTANGTACGCAGAGTTTCAGNCNTTTAATNCAGTTCCGGAANGCATCTCCATGCCCATTTTCAGGTATACCNAGCGTACACTNATAAACAGCGGACCCCAGGGNCCGTCGCGACCTA-T-ACCGTCCAC--GC-AGATGCTTATTTTGAGTTT-GGGAACGAGAAANAA------G------G--GGCTAN-GTCNGGGGA--ATATGGTTG---G-T-AGAAG---NAC-CGAAC----C-T---TTC--CT-GT---A-AAA------C----G---TCACAATA--CGC-GG-CTTGTGNGCGGGNGCGTTGTCATGCAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCATTTGNATAACAGGACCAC-G-ATATCGGNGA-AAATA--ACATANANTGCCTTCTTAGCACTNATCAACTTCGTTTGGNAATATNTGGGNNGGCGACAGTTTTTNGCAGCCNAAATTCGATTTTGTTNTTAGTTTTTCTGGTAGGCTCGAAAAAGTNNACCTATNTCTCATCNCCAGTAATAATGTCACAAGNCTGCTTTCGTTGATACNNTGGANACANTTTGGGNAGTTTTCTCGCGGTTTCAAATCGGGCATGNCTTTGCTCGNCTGNCAACAAATNNGGTGNCCATNTNGCNNTNATACGTTCTNACTTTTAGGTT
gi|1 : CCCTTGTTACGTACACAAAGTTTCAAACGTTTAATCCAGTTCTTAAAGGCATCTCCATACTCATTTTCAGGTATACCCAGCATACACTGATAAACAGCGGACCCCAGGGCCTGTCGGGACCTA-T-ACCGTCTACCAGCTAAATGTTTTTTTTCAGTTTAGGGAACAAGAAATAGTCACACG------G--GGCTAG-GTCTGGGGA--ATATGGT-GCATG-T-GGAAG---AACTCGAAC----CCT---TTC--CTTGTTAAA-AAA------C----GAGGTCACAATA---GC-AGACTTATGCGCAGGGGCATTGTCATGCAACAGGGATA-G-GTGCTTTAAGCTAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCAGTTGCATAATAGGACCAC-GTATATCAAAGA-AAATA--ACAAACATTGCTTTCTTAGCACTGATCAATTT--TTTGGCAAT-TGTGGGGCGGCGACAGTTTTTGGTAGCCC--AT---ATTTTGTTGTTAATTTTTCTGGTAGGCTCGAAAAAGTGTACCTATGTCTCATCTCCAGTAATAATGTCACAAAACTGCTTTCTTTGATATTTTGGAAACATTTTAAGCAGTTTTCTCGCGGTTTCAAATCGGACATGCTTTTGCTTGTCTGACAACAAATGAGGTATCCATATAGCTGTAATACG-TCTCATTTTTAAATT
gi|10 : tattaaattatttacgcgtcataccctcaaagtaatccAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTG-------------TTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATGAAATA--AACCAGTCACAGA-TTTTCTATTTGGTA---CAACC
gi|11 : TGCTTTAAGCGAGGGTGTGGG----CAA---CG-TTTGA--A--ACATT-GTTTTCT-AAGTTTCT--AA-ACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCA
gi|12 : GTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT-AAATTTCTTCAACACTTTTTC-TTTATAAAACA--TACCAGTCACAGA-TTTTCTATTTGGTA---TAACCA
gi|13 : GTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT-AAGTT--------------------ATAAAATA--TACCAGTCACATATTTTTCTATTTGGTA---CAACCA
gi|14 : TTAAGTTTCTTCAACACTTTTTC-TTTA-AAAATA--TTCCAATCATAGA-TTTTCTATTTGGTA---CAACCA
gi|15 : cagtactttgaAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG---------------------TTTTAAGTTTCTTCAACACTTTTTC-TTTAT
gi|16 : AACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT
gi|2 : TTAAGTTTTGGGAA-GAGAGAAAA------GTGACAAGACGGCTATAGTTCGAGAATAATAGGGTTG---ACT-AGAA-----AA-TGAAT----T-TACATTC---T-GT---A-AAA------TCTCAG---TCATAATA--CGT-GC-TTTGTGAGTGGGTACATTGACATTGAA-AAGAACA-GCGTACTTTATACATGT-TGTGGGACTACGG---CG-TTTGT--A--GTA---GTTTGTC-AAGTTTTTTCAG---TTTGCCGTTTTTAAAATACTTACATGTCAC----TGTTCTACCTAATAATACCACCGTTTGTATAACTTGGTCA----ATATTGGGGATGAATATTGCATAAAATACCTTCTTA-TACTTA--AACTTCGTTTGGAAATATCTGAACGGGTCACA-TTTTTCGCAGTCAAAATTCGATTTTGTTTTTAGTT---------------AAAAAATTAACCTATCTCTCATCACCAGTA-TAA---CATAAGCCT--TTTTGTTG-TACAATGGATATAGTTTGGGAAGT--------GGTTT-------GGCATAACTTTACTCAATTGTCAACAAATCCGGTGGCCATCTTGCATTTAT-CGTTCTAACTTTTAGGTT
gi|3 : CCCTTGCTAGGTAAGCAGAGTTTTAGCCTTTTAATACAATTTCGGAATGTATTTCCATGCC------TAAGTATACCAAA-GTATATTTA-AAACAG-G------AGGGATTATGGTG---TAGT-ACCGTCCAC--GC-AGA-----A-TTTGA-CTT-GGAAACAGGAAATAA------C------G--GGCCAG-TTCGGATGA--ATATG---G---G-T-TGAAGGGTTACACGAAC----C-T---CTCGTTT-CT---A-------------------CTACAAGA---GCAGG-CCCATGAGCTGATGCTTTGTCATGTAACA---ACA--------------CAGTATCCGGG----CGGTCTCGACTTGG--ACGACGTTAGTATTTTT---TTTGTTTAA--------------------G--TACCGGTTACTGG-TTTGCCATTAGGCA---CGGCTCTATGAATAGCAGGACCATGG-ATACTGGCAA-AAATA--ACATAttattcaaaatgtcatgaactcctgctaaagataatttttgttattggcgctaattgtcttaccgaat
gi|4 : CCGTTGC-ACCAA-TTATCGTCCAG--AC-AGATACTTATT--GAGTCT-AGG-----GGAAAAA------G------G--AGCTAC-GTTAAGATA--ATATGGTTG---GATGAGAAG---CAC---AACAATAG-T---TAC--CT-GT---ATAAAATAGTTC----A---TGACAATGTTCGC-GA---TGTGTGTTGAGGCGTTGTCATGCGACAAGAGTATA-GTGCGATGA-CCTGTGCTTGGA----CGG---CG-TTTAATGA--ACA
gi|5 : aaaatatttacctcattctgacacgcgcaactttaatatcataatccaatactttttcataatctccatctgcgtatactgtgcagacacgaatattgaagatccgacatgtttCAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCAatatattcagttgtgc
gi|6 : AACAGGGATA-G-GTGCTTTAAGCCAGGGTGTGGG----CGA---AG-TTTGA--A--ACATT-GTTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCA
gi|7 : AACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-ATTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGT-TTTTCTATTTGGTA---CAACC
gi|8 : AACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT-AAGTGTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCTAAGA-TTTTCTATTTGGTA---CAACC
gi|9 : CAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---TG-TTTGA--A--ACATT-GTTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTTGTA---CAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333 1 1 33333333 2222222222 11 1 1111111 2 11111 5555555555555555 11 11 3333333333333333333333333333333333333333333333333333333333333333333 33333333333 3333 1 11 1 11 11 1 1 22222222 555555555555555 1 222 11 1 33333333 3333333 1 1
lowQualScore : 1 2 1 1 1 2 1 000000 1 5 1 5 33333333 1 0 3 2222222222 88 3 9999999 3 0 2 0 44444 1 7777777777777777 11 1 00 33 2 9 0000000000000000000000000000000000000000000000000000000000000000000 0 44444444444 1 6 1 4 3 3 5555 444 2 33 33 2 6 8 2 2 44 3 555 1 7777 0 1 3 88 1 1 5 1 88 77 1 5 1 22 2 5 1 22222222 1 333333333333333 22 1 1 5 111 1 77 2 5 22 1 1 1 44444444 2222222 1 1 1 22 1 1 1 22 1 5 5 1
lowQualScore : . . . . . . . ...... . . . . ........ . . . .......... .. . ....... . . . . ..... . ................ .. . .. .. . . ................................................................... . ........... . . . . . . .... ... . .. .. . . . . . .. . ... . .... . . . .. . . . . .. .. . . . .. . . . ........ . ............... .. . . . ... . .. . . .. . . . ........ ....... . . . .. . . . .. . . . .
lowQualScore : 0 5 0 0 0 5 0 000000 0 0 0 5 00000000 0 7 7 7777777777 33 3 7777777 2 2 5 0 00000 0 5555555555555555 00 0 55 88 5 2 8888888888888888888888888888888888888888888888888888888888888888888 2 22222222222 0 5 0 2 3 3 7777 777 7 77 77 9 1 5 5 9 22 1 444 0 0000 7 0 3 33 0 0 0 0 00 55 0 5 0 00 5 0 0 00000000 0 555555555555555 00 0 0 5 000 0 55 5 5 00 0 0 0 55555555 0000000 0 0 0 00 0 0 0 00 0 5 5 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTGCTANGTACGCAGAGTTTCAGNCNTTTAATNCAGTTCCGGAANGCATCTCCATGCCCATTTTCAGGTATACCNAGCGTACACTNATAAACAGCGGACCCCAGGGNCCGTCGCGACCTA-T-ACCGTCCAC--GC-AGATGCTTATTTTGAGTTT-GGGAACGAGAAANAA------G------G--GGCTAN-GTCNGGGGA--ATATGGTTG---G-T-AGAAG---NAC-CGAAC----C-T---TTC--CT-GT---A-AAA------C----G---TCACAATA--CGC-GG-CTTGTGNGCGGGNGCGTTGTCATGCAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCATTTGNATAACAGGACCAC-G-ATATCGGNGA-AAATA--ACATANANTGCCTTCTTAGCACTNATCAACTTCGTTTGGNAATATNTGGGNNGGCGACAGTTTTTNGCAGCCNAAATTCGATTTTGTTNTTAGTTTTTCTGGTAGGCTCGAAAAAGTNNACCTATNTCTCATCNCCAGTAATAATGTCACAAGNCTGCTTTCGTTGATACNNTGGANACANTTTGGGNAGTTTTCTCGCGGTTTCAAATCGGGCATGNCTTTGCTCGNCTGNCAACAAATNNGGTGNCCATNTNGCNNTNATACGTTCTNACTTTTAGGTT
Reference ( family-735 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTGCTANGTACGCAGAGTTTCAGNCNTTTAATNCAGTTCCGGAANGCATCTCCATGCCCATTTTCAGGTATACCNAGCGTACACTNATAAACAGCGGACCCCAGGGNCCGTCGCGACCTA-T-ACCGTCCAC--GC-AGATGCTTATTTTGAGTTT-GGGAACGAGAAANAA------G------G--GGCTAN-GTCNGGGGA--ATATGGTTG---G-T-AGAAG---NAC-CGAAC----C-T---TTC--CT-GT---A-AAA------C----G---TCACAATA--CGC-GG-CTTGTGNGCGGGNGCGTTGTCATGCAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCATTTGNATAACAGGACCAC-G-ATATCGGNGA-AAATA--ACATANANTGCCTTCTTAGCACTNATCAACTTCGTTTGGNAATATNTGGGNNGGCGACAGTTTTTNGCAGCCNAAATTCGATTTTGTTNTTAGTTTTTCTGGTAGGCTCGAAAAAGTNNACCTATNTCTCATCNCCAGTAATAATGTCACAAGNCTGCTTTCGTTGATACNNTGGANACANTTTGGGNAGTTTTCTCGCGGTTTCAAATCGGGCATGNCTTTGCTCGNCTGNCAACAAATNNGGTGNCCATNTNGCNNTNATACGTTCTNACTTTTAGGTT
gi|1 : CCCTTGTTACGTACACAAAGTTTCAAACGTTTAATCCAGTTCTTAAAGGCATCTCCATACTCATTTTCAGGTATACCCAGCATACACTGATAAACAGCGGACCCCAGGGCCTGTCGGGACCTA-T-ACCGTCTACCAGCTAAATGTTTTTTTTCAGTTTAGGGAACAAGAAATAGTCACACG------G--GGCTAG-GTCTGGGGA--ATATGGT-GCATG-T-GGAAG---AACTCGAAC----CCT---TTC--CTTGTTAAA-AAA------C----GAGGTCACAATA---GC-AGACTTATGCGCAGGGGCATTGTCATGCAACAGGGATA-G-GTGCTTTAAGCTAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCAGTTGCATAATAGGACCAC-GTATATCAAAGA-AAATA--ACAAACATTGCTTTCTTAGCACTGATCAATTT--TTTGGCAAT-TGTGGGGCGGCGACAGTTTTTGGTAGCCC--AT---ATTTTGTTGTTAATTTTTCTGGTAGGCTCGAAAAAGTGTACCTATGTCTCATCTCCAGTAATAATGTCACAAAACTGCTTTCTTTGATATTTTGGAAACATTTTAAGCAGTTTTCTCGCGGTTTCAAATCGGACATGCTTTTGCTTGTCTGACAACAAATGAGGTATCCATATAGCTGTAATACG-TCTCATTTTTAAATT
gi|10 : tattaaattatttacgcgtcataccctcaaagtaatccAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTG-------------TTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATGAAATA--AACCAGTCACAGA-TTTTCTATTTGGTA---CAACC
gi|11 : TGCTTTAAGCGAGGGTGTGGG----CAA---CG-TTTGA--A--ACATT-GTTTTCT-AAGTTTCT--AA-ACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCA
gi|12 : GTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT-AAATTTCTTCAACACTTTTTC-TTTATAAAACA--TACCAGTCACAGA-TTTTCTATTTGGTA---TAACCA
gi|13 : GTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT-AAGTT--------------------ATAAAATA--TACCAGTCACATATTTTTCTATTTGGTA---CAACCA
gi|14 : TTAAGTTTCTTCAACACTTTTTC-TTTA-AAAATA--TTCCAATCATAGA-TTTTCTATTTGGTA---CAACCA
gi|15 : cagtactttgaAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG---------------------TTTTAAGTTTCTTCAACACTTTTTC-TTTAT
gi|16 : AACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT
gi|2 : TTAAGTTTTGGGAA-GAGAGAAAA------GTGACAAGACGGCTATAGTTCGAGAATAATAGGGTTG---ACT-AGAA-----AA-TGAAT----T-TACATTC---T-GT---A-AAA------TCTCAG---TCATAATA--CGT-GC-TTTGTGAGTGGGTACATTGACATTGAA-AAGAACA-GCGTACTTTATACATGT-TGTGGGACTACGG---CG-TTTGT--A--GTA---GTTTGTC-AAGTTTTTTCAG---TTTGCCGTTTTTAAAATACTTACATGTCAC----TGTTCTACCTAATAATACCACCGTTTGTATAACTTGGTCA----ATATTGGGGATGAATATTGCATAAAATACCTTCTTA-TACTTA--AACTTCGTTTGGAAATATCTGAACGGGTCACA-TTTTTCGCAGTCAAAATTCGATTTTGTTTTTAGTT---------------AAAAAATTAACCTATCTCTCATCACCAGTA-TAA---CATAAGCCT--TTTTGTTG-TACAATGGATATAGTTTGGGAAGT--------GGTTT-------GGCATAACTTTACTCAATTGTCAACAAATCCGGTGGCCATCTTGCATTTAT-CGTTCTAACTTTTAGGTT
gi|3 : CCCTTGCTAGGTAAGCAGAGTTTTAGCCTTTTAATACAATTTCGGAATGTATTTCCATGCC------TAAGTATACCAAA-GTATATTTA-AAACAG-G------AGGGATTATGGTG---TAGT-ACCGTCCAC--GC-AGA-----A-TTTGA-CTT-GGAAACAGGAAATAA------C------G--GGCCAG-TTCGGATGA--ATATG---G---G-T-TGAAGGGTTACACGAAC----C-T---CTCGTTT-CT---A-------------------CTACAAGA---GCAGG-CCCATGAGCTGATGCTTTGTCATGTAACA---ACA--------------CAGTATCCGGG----CGGTCTCGACTTGG--ACGACGTTAGTATTTTT---TTTGTTTAA--------------------G--TACCGGTTACTGG-TTTGCCATTAGGCA---CGGCTCTATGAATAGCAGGACCATGG-ATACTGGCAA-AAATA--ACATAttattcaaaatgtcatgaactcctgctaaagataatttttgttattggcgctaattgtcttaccgaat
gi|4 : CCGTTGC-ACCAA-TTATCGTCCAG--AC-AGATACTTATT--GAGTCT-AGG-----GGAAAAA------G------G--AGCTAC-GTTAAGATA--ATATGGTTG---GATGAGAAG---CAC---AACAATAG-T---TAC--CT-GT---ATAAAATAGTTC----A---TGACAATGTTCGC-GA---TGTGTGTTGAGGCGTTGTCATGCGACAAGAGTATA-GTGCGATGA-CCTGTGCTTGGA----CGG---CG-TTTAATGA--ACA
gi|5 : aaaatatttacctcattctgacacgcgcaactttaatatcataatccaatactttttcataatctccatctgcgtatactgtgcagacacgaatattgaagatccgacatgtttCAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCAatatattcagttgtgc
gi|6 : AACAGGGATA-G-GTGCTTTAAGCCAGGGTGTGGG----CGA---AG-TTTGA--A--ACATT-GTTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCA
gi|7 : AACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-ATTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGT-TTTTCTATTTGGTA---CAACC
gi|8 : AACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT-AAGTGTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCTAAGA-TTTTCTATTTGGTA---CAACC
gi|9 : CAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---TG-TTTGA--A--ACATT-GTTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTTGTA---CAA
blockSeqs : G A C T A G T . A . T . G A G CACCAATT . . TACTTAT T G T AACAG A GTGACAAGAC TA C TA G T GATGAGAAGCACAACAATAGTTACCTGTATAAAATAGTTCA CGTGCTT A G T A T C ACTA TCT A TG CG A T T C G CT T ATA T TGG G T TT A A . T . CG A A C CG C . C AAAATTCG T . TA C A . . C . G . AA T G A . . A A T CC G C T AT T . T A
blockSeqs : T TGTAGT . . A T G . AAGA T CG G G . G T ACTAGAAAATGAATTTACATTCTGTAAAATCTCAG GCAGGCC A T T T . . . . . . . . C T C . . . . A . C . .
blockSeqs : . . . . A GG C A . . . GTTGAAGGGTTACACGAACCTCTCGTTTCTA TTCGCGA T T G G . . . . . . . . T T C . . . .
blockSeqs : . . . . . . . . T T C . . . .
blockSeqs : . . . . . . . . T T C . . . .
blockSeqs : . . . . . . . . T T C . . . .
blockSeqs : . . . . . . . . T T C . . . .
blockSeqs : . . . . . . . . T T C . . . .
blockSeqs : . . . . . . . . T . C . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTGCTANGTACGCAGAGTTTCAGNCNTTTAATNCAGTTCCGGAANGCATCTCCATGCCCATTTTCAGGTATACCNAGCGTACACTNATAAACAGCGGACCCCAGGGNCCGTCGCGACCTA-T-ACCGTCCAC--GC-AGATGCTTATTTTGAGTTT-GGGAACGAGAAANAA------G------G--GGCTAN-GTCNGGGGA--ATATGGTTG---G-T-AGAAG---NAC-CGAAC----C-T---TTC--CT-GT---A-AAA------C----G---TCACAATA--CGC-GG-CTTGTGNGCGGGNGCGTTGTCATGCAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCATTTGNATAACAGGACCAC-G-ATATCGGNGA-AAATA--ACATANANTGCCTTCTTAGCACTNATCAACTTCGTTTGGNAATATNTGGGNNGGCGACAGTTTTTNGCAGCCNAAATTCGATTTTGTTNTTAGTTTTTCTGGTAGGCTCGAAAAAGTNNACCTATNTCTCATCNCCAGTAATAATGTCACAAGNCTGCTTTCGTTGATACNNTGGANACANTTTGGGNAGTTTTCTCGCGGTTTCAAATCGGGCATGNCTTTGCTCGNCTGNCAACAAATNNGGTGNCCATNTNGCNNTNATACGTTCTNACTTTTAGGTT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTGCTANGTACGCAGAGTTTCAGNCNTTTAATNCAGTTCCGGAANGCATCTCCATGCCCATTTTCAGGTATACCNAGCGTACACTNATAAACAGCGGACCCCAGGGNCCGTCGCGACCTA-T-ACCGTCCAC--GC-AGATGCTTATTTTGAGTTT-GGGAACGAGAAANAA------G------G--GGCTAN-GTCNGGGGA--ATATGGTTG---G-T-AGAAG---NAC-CGAAC----C-T---TTC--CT-GT---A-AAA------C----G---TCACAATA--CGC-GG-CTTGTGNGCGGGNGCGTTGTCATGCAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCATTTGNATAACAGGACCAC-G-ATATCGGNGA-AAATA--ACATANANTGCCTTCTTAGCACTNATCAACTTCGTTTGGNAATATNTGGGNNGGCGACAGTTTTTNGCAGCCNAAATTCGATTTTGTTNTTAGTTTTTCTGGTAGGCTCGAAAAAGTNNACCTATNTCTCATCNCCAGTAATAATGTCACAAGNCTGCTTTCGTTGATACNNTGGANACANTTTGGGNAGTTTTCTCGCGGTTTCAAATCGGGCATGNCTTTGCTCGNCTGNCAACAAATNNGGTGNCCATNTNGCNNTNATACGTTCTNACTTTTAGGTT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333 1 1 33333333 2222222222 11 1 1111111 2 11111 5555555555555555 11 11 3333333333333333333333333333333333333333333333333333333333333333333 33333333333 3333 1 11 1 11 11 1 1 22222222 555555555555555 1 222 11 1 33333333 3333333 1 1
lowQualScore : 1 2 1 1 1 2 1 000000 1 5 1 5 33333333 1 0 3 2222222222 88 3 9999999 3 0 2 0 44444 1 7777777777777777 11 1 00 33 2 9 0000000000000000000000000000000000000000000000000000000000000000000 0 44444444444 1 6 1 4 3 3 5555 444 2 33 33 2 6 8 2 2 44 3 555 1 7777 0 1 3 88 1 1 5 1 88 77 1 5 1 22 2 5 1 22222222 1 333333333333333 22 1 1 5 111 1 77 2 5 22 1 1 1 44444444 2222222 1 1 1 22 1 1 1 22 1 5 5 1
lowQualScore : . . . . . . . ...... . . . . ........ . . . .......... .. . ....... . . . . ..... . ................ .. . .. .. . . ................................................................... . ........... . . . . . . .... ... . .. .. . . . . . .. . ... . .... . . . .. . . . . .. .. . . . .. . . . ........ . ............... .. . . . ... . .. . . .. . . . ........ ....... . . . .. . . . .. . . . .
lowQualScore : 0 5 0 0 0 5 0 000000 0 0 0 5 00000000 0 7 7 7777777777 33 3 7777777 2 2 5 0 00000 0 5555555555555555 00 0 55 88 5 2 8888888888888888888888888888888888888888888888888888888888888888888 2 22222222222 0 5 0 2 3 3 7777 777 7 77 77 9 1 5 5 9 22 1 444 0 0000 7 0 3 33 0 0 0 0 00 55 0 5 0 00 5 0 0 00000000 0 555555555555555 00 0 0 5 000 0 55 5 5 00 0 0 0 55555555 0000000 0 0 0 00 0 0 0 00 0 5 5 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTGCTANGTACGCAGAGTTTCAGNCNTTTAATNCAGTTCCGGAANGCATCTCCATGCCCATTTTCAGGTATACCNAGCGTACACTNATAAACAGCGGACCCCAGGGNCCGTCGCGACCTA-T-ACCGTCCAC--GC-AGATGCTTATTTTGAGTTT-GGGAACGAGAAANAA------G------G--GGCTAN-GTCNGGGGA--ATATGGTTG---G-T-AGAAG---NAC-CGAAC----C-T---TTC--CT-GT---A-AAA------C----G---TCACAATA--CGC-GG-CTTGTGNGCGGGNGCGTTGTCATGCAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCATTTGNATAACAGGACCAC-G-ATATCGGNGA-AAATA--ACATANANTGCCTTCTTAGCACTNATCAACTTCGTTTGGNAATATNTGGGNNGGCGACAGTTTTTNGCAGCCNAAATTCGATTTTGTTNTTAGTTTTTCTGGTAGGCTCGAAAAAGTNNACCTATNTCTCATCNCCAGTAATAATGTCACAAGNCTGCTTTCGTTGATACNNTGGANACANTTTGGGNAGTTTTCTCGCGGTTTCAAATCGGGCATGNCTTTGCTCGNCTGNCAACAAATNNGGTGNCCATNTNGCNNTNATACGTTCTNACTTTTAGGTT
Reference ( family-735 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTGCTANGTACGCAGAGTTTCAGNCNTTTAATNCAGTTCCGGAANGCATCTCCATGCCCATTTTCAGGTATACCNAGCGTACACTNATAAACAGCGGACCCCAGGGNCCGTCGCGACCTA-T-ACCGTCCAC--GC-AGATGCTTATTTTGAGTTT-GGGAACGAGAAANAA------G------G--GGCTAN-GTCNGGGGA--ATATGGTTG---G-T-AGAAG---NAC-CGAAC----C-T---TTC--CT-GT---A-AAA------C----G---TCACAATA--CGC-GG-CTTGTGNGCGGGNGCGTTGTCATGCAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCATTTGNATAACAGGACCAC-G-ATATCGGNGA-AAATA--ACATANANTGCCTTCTTAGCACTNATCAACTTCGTTTGGNAATATNTGGGNNGGCGACAGTTTTTNGCAGCCNAAATTCGATTTTGTTNTTAGTTTTTCTGGTAGGCTCGAAAAAGTNNACCTATNTCTCATCNCCAGTAATAATGTCACAAGNCTGCTTTCGTTGATACNNTGGANACANTTTGGGNAGTTTTCTCGCGGTTTCAAATCGGGCATGNCTTTGCTCGNCTGNCAACAAATNNGGTGNCCATNTNGCNNTNATACGTTCTNACTTTTAGGTT
gi|1 : CCCTTGTTACGTACACAAAGTTTCAAACGTTTAATCCAGTTCTTAAAGGCATCTCCATACTCATTTTCAGGTATACCCAGCATACACTGATAAACAGCGGACCCCAGGGCCTGTCGGGACCTA-T-ACCGTCTACCAGCTAAATGTTTTTTTTCAGTTTAGGGAACAAGAAATAGTCACACG------G--GGCTAG-GTCTGGGGA--ATATGGT-GCATG-T-GGAAG---AACTCGAAC----CCT---TTC--CTTGTTAAA-AAA------C----GAGGTCACAATA---GC-AGACTTATGCGCAGGGGCATTGTCATGCAACAGGGATA-G-GTGCTTTAAGCTAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCAGTTGCATAATAGGACCAC-GTATATCAAAGA-AAATA--ACAAACATTGCTTTCTTAGCACTGATCAATTT--TTTGGCAAT-TGTGGGGCGGCGACAGTTTTTGGTAGCCC--AT---ATTTTGTTGTTAATTTTTCTGGTAGGCTCGAAAAAGTGTACCTATGTCTCATCTCCAGTAATAATGTCACAAAACTGCTTTCTTTGATATTTTGGAAACATTTTAAGCAGTTTTCTCGCGGTTTCAAATCGGACATGCTTTTGCTTGTCTGACAACAAATGAGGTATCCATATAGCTGTAATACG-TCTCATTTTTAAATT
gi|10 : tattaaattatttacgcgtcataccctcaaagtaatccAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTG-------------TTTTTTTAAGTTTCTTCAACACTTTTTC-TTTATGAAATA--AACCAGTCACAGA-TTTTCTATTTGGTA---CAACC
gi|11 : TGCTTTAAGCGAGGGTGTGGG----CAA---CG-TTTGA--A--ACATT-GTTTTCT-AAGTTTCT--AA-ACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCA
gi|12 : GTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT-AAATTTCTTCAACACTTTTTC-TTTATAAAACA--TACCAGTCACAGA-TTTTCTATTTGGTA---TAACCA
gi|13 : GTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT-AAGTT--------------------ATAAAATA--TACCAGTCACATATTTTTCTATTTGGTA---CAACCA
gi|14 : TTAAGTTTCTTCAACACTTTTTC-TTTA-AAAATA--TTCCAATCATAGA-TTTTCTATTTGGTA---CAACCA
gi|15 : cagtactttgaAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG---------------------TTTTAAGTTTCTTCAACACTTTTTC-TTTAT
gi|16 : AACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT
gi|2 : TTAAGTTTTGGGAA-GAGAGAAAA------GTGACAAGACGGCTATAGTTCGAGAATAATAGGGTTG---ACT-AGAA-----AA-TGAAT----T-TACATTC---T-GT---A-AAA------TCTCAG---TCATAATA--CGT-GC-TTTGTGAGTGGGTACATTGACATTGAA-AAGAACA-GCGTACTTTATACATGT-TGTGGGACTACGG---CG-TTTGT--A--GTA---GTTTGTC-AAGTTTTTTCAG---TTTGCCGTTTTTAAAATACTTACATGTCAC----TGTTCTACCTAATAATACCACCGTTTGTATAACTTGGTCA----ATATTGGGGATGAATATTGCATAAAATACCTTCTTA-TACTTA--AACTTCGTTTGGAAATATCTGAACGGGTCACA-TTTTTCGCAGTCAAAATTCGATTTTGTTTTTAGTT---------------AAAAAATTAACCTATCTCTCATCACCAGTA-TAA---CATAAGCCT--TTTTGTTG-TACAATGGATATAGTTTGGGAAGT--------GGTTT-------GGCATAACTTTACTCAATTGTCAACAAATCCGGTGGCCATCTTGCATTTAT-CGTTCTAACTTTTAGGTT
gi|3 : CCCTTGCTAGGTAAGCAGAGTTTTAGCCTTTTAATACAATTTCGGAATGTATTTCCATGCC------TAAGTATACCAAA-GTATATTTA-AAACAG-G------AGGGATTATGGTG---TAGT-ACCGTCCAC--GC-AGA-----A-TTTGA-CTT-GGAAACAGGAAATAA------C------G--GGCCAG-TTCGGATGA--ATATG---G---G-T-TGAAGGGTTACACGAAC----C-T---CTCGTTT-CT---A-------------------CTACAAGA---GCAGG-CCCATGAGCTGATGCTTTGTCATGTAACA---ACA--------------CAGTATCCGGG----CGGTCTCGACTTGG--ACGACGTTAGTATTTTT---TTTGTTTAA--------------------G--TACCGGTTACTGG-TTTGCCATTAGGCA---CGGCTCTATGAATAGCAGGACCATGG-ATACTGGCAA-AAATA--ACATAttattcaaaatgtcatgaactcctgctaaagataatttttgttattggcgctaattgtcttaccgaat
gi|4 : CCGTTGC-ACCAA-TTATCGTCCAG--AC-AGATACTTATT--GAGTCT-AGG-----GGAAAAA------G------G--AGCTAC-GTTAAGATA--ATATGGTTG---GATGAGAAG---CAC---AACAATAG-T---TAC--CT-GT---ATAAAATAGTTC----A---TGACAATGTTCGC-GA---TGTGTGTTGAGGCGTTGTCATGCGACAAGAGTATA-GTGCGATGA-CCTGTGCTTGGA----CGG---CG-TTTAATGA--ACA
gi|5 : aaaatatttacctcattctgacacgcgcaactttaatatcataatccaatactttttcataatctccatctgcgtatactgtgcagacacgaatattgaagatccgacatgtttCAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCAatatattcagttgtgc
gi|6 : AACAGGGATA-G-GTGCTTTAAGCCAGGGTGTGGG----CGA---AG-TTTGA--A--ACATT-GTTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTGGTA---CAACCA
gi|7 : AACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-ATTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGT-TTTTCTATTTGGTA---CAACC
gi|8 : AACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---CG-TTTGA--A--ACATT-GTTTTTT-AAGTGTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCTAAGA-TTTTCTATTTGGTA---CAACC
gi|9 : CAACAGGGATA-G-GTGCTTTAAGCCAGTGTGTGGG----CGA---TG-TTTGA--A--ACATT-GTTTT-TTAAGTTTCTTCAACACTTTTTC-TTTATAAAATA--TACCAGTCACAGA-TTTTCTATTTTGTA---CAA