lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111
lowQualScore : 1 1 111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 1111111 1111 222 1 6666666666 8888888888888888888888888888888888888888888888888
lowQualScore : 0 9 6 999 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 4 4 6 6 5 1 3333333 4 1 9 1 5 0000 777 0 3 0000000000 2 6 6 0000000000000000000000000000000000000000000000000
lowQualScore : . . . ... .......................................................................................................................... . . . . . . ....... . . . . . .... ... . . .......... . . . .................................................
lowQualScore : 5 9 3 000 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 5 0 7 4 9 2222222 8 2 2 0 0 6666 666 6 2 4444444444 8 7 0 3333333333333333333333333333333333333333333333333
consensus : NNNNNNNATNTAAAATAAAATTTACTATCGATCTTCCGAAGGGAAGAAAATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGACAGGAAATGACGTAACGTCAAAACATTAAAAAGGAAATGACGTGAC-GCTAGCAACGTCAATTGACGTCGCGTTA-TAATTTCCCCGAACTGTTNAGATACATNNA----TGAGTTCCAGTTATAAATAAGTCATTCA--------------TAAAGTT----TG------T---------------ATTACATCCATTTGGTGTTT
Reference ( gi|1 ) : CTATTTGATGTAAAATGAATTTTACTATGGGTCTTCCGAAGGGAAGAAAATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAACTGGCAGGAAGTGACGTAACATCAAAACATTTAAGAGGAAATGATGTAAT-GTAAGCAACGCCAAATGACGTTGCGTCA-TAATTTCCTTGAACTTTTCAGACACA-AAA----TGAGTTCCAGCTATCAATAAGTCGTTCA--------------TAAGGTT----TG------T---------------ATTACATCCATTTGGTGTTT
gi|3 : ATTTAAAATTAA-----CTATCAATATTCCAAAGGGAAGAAAATACA
gi|8 : ttATATAAAAT------TACTATCAATCTTCTGAAGGGAAGAAAATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgacaggaaatgacgtaacgtcaaaacataaaaaaggaaatgacgtgacactagcaatgtcaattgacgtcgcgttagaatttcccgaactatcaagatacatacatagttccagttat
gi|2 : aaATAAAATTTACTATCAGTATTCCGAATGGAAGAAAATATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgacaggaaatgacgtaacgtca
gi|4 : ttttATAAAATTTACTATCGATCTTCCGAAGGGAAGAAAATATAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgacaggaaatgacgtaacgtcaaaccattaaaaaggaaatgacattatgttagcaatgtcaattgacattaagatacatacagagttccaattagaagtaagtcatttacagagctagtatgtaaaa
gi|14 : aattatATGAATTTTACTATTGATCTTCCAAAGGGAAGAAAATATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgactggaaatgaataacgtcaaaacattaaaaatgaaatgacgtgcgtaagcaacgtcaattgacgtcacgtt
gi|15 : actgtatgtattgATAAAATTTACTATCGATCTTCCGAAGGGAAGAAAA
gi|16 : atTAAAATTTACTATCAATCTTCAGAAGGGAAGAAAaa
gi|5 : ctTTACTATCAATCTTCCGAAGGGAAG-AAA---ATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGACAGGAAGTGACGTAACGTCAAAACATTAAAAAGGAAATGACGTGAC-GCTAGC
gi|6 : tctaacataaaaCTGGCAAGAAATGACGTAGCGTCAAAACATTTAAAAGAAAATGATGCAAC-GTTAACAACGCCAAATGACGTCACGTCA-GAATTTCCCCAAGCTGTTCAGACACA-TAATGAGTGAGTTCCAGCTATCAACAAGTCATTCA--------------TAAAGTTAGTATG------TGAAATTTGATTTAACATTACATCTATTTGGTGTTTgttacatcatttc
gi|7 : CTGACAGGAAATGACTTAACGTCAAAACATTAAAAAGGAAATGACGTGAC-GTTAGCAACGTCAATTGATGTTGAGTTA-GAATTTCC-TAAACTTTTAAGATACATACA----T-AGTTCCAGTTATAAATAAGTCATTCACAATAGTTAGTATGTAAAATT----TGATTTAAT---------------GTTACATCCATTTGGTGTTTt
gi|3 : CTGACAGGAAATGACGTAACGTCAAAACATAAAAAAGGAAATGACGTGAC-ACTAGCAATGTCAATTGACGTCGCGTTA-GAATTTCC-CGAACTATCAAGATACATACA----T-AGTTCCAGTTATt
gi|2 : ttatttaaaattaactatcaatattccaaagggaagaaaatacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTGACAGGAAATGACGTAACGTCAAACCATTAAAAAGGAAATGACATTAT-GTTAGCAATGTCAATTGACATTAAG--A-TA----------------CATACA-----------GAGTTCCAATTAGAAGTAAGTCATTTA--------------CAGAGCT----AG------T---------------AT
gi|4 : ttttataaaatttactatcagtattccgaatggaagaaaatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTGACTGGAAATGA-ATAACGTCAAAACATTAAAAATGAAATGACGT-GC-GTAAGCAACGTCAATTGACGTCACGTgtaaaa
gi|12 : aattatataaaatttactatcgatcttccgaagggaagaaaatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTGACAGGAAATGACGTAACGTCAAAACATTAAAAAGGAAATGACGTG-----AGGCTA-GTTAGTTGACGTTGCt
gi|8 : CTGACAGGAAATGACGTAACGTCAtag
gi|11 : aaatataaaattactatcaatcttctgaagggaagaaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGACAGGAAATGACGTAACGTCAAAACATTAAAAAGGAAATGACGTGAC-GCTAGCAAAGTCAATTGACGTCGCGTTA-TA
gi|10 : TGACAGGAAATGACGTAACGTCAAAACATTAAAAAGGAAATGACGTGAC-GCTAGCAAAGTCAATTGACGTCGCGTTA-TA
gi|13 : GACAGAAAATGACGTAAAGTCAAAACATAAAAGAGGAAATGATGTAACAGCAA-TAACGCCAAATGTCGT
gi|9 : TAACGTAACGTT-AAACATC---------ATTGTATAAT-GTGAATAGTGCCGGATAGCGTCGCGTTAGT--TTTTCCCGAATTGTTTGGATACA-CA------GAGTTTCAGTTAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111
lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 2222222222 0000000000000000000000000000000000000000000000000
lowQualScore : 1 5 4 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 3 0 44 888 3 3 1 0000000000 3 4444444444444444444444444444444444444444444444444
lowQualScore : . . . . ........................................................................................................................ . . . .. ... . . . .......... . .................................................
lowQualScore : 0 7 8 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 3 8 66 111 5 7 0 2222222222 0 8888888888888888888888888888888888888888888888888
consensus : NNNNNNNATNTAAA-ATAAAATTTACTATCGATCTTCCGAAGGGAAGAAAATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNANCTGACAGGAAATGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGCTAGCA--ACGTCAATTGACGTCGCGTTA-TAATTTCCCCGAACTNTTNAGATAC---ATACATGAGTTCCAGTTATNAATAAGTCATTCA--------------TAAAGTT----TG------T---------------ATTACATCCATTTGGTGTTT
Reference ( family-707 ) : NNNNNNNATNTAAA-ATAAAATTTACTATCGATCTTCCGAAGGGAAGAAAATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGACAGGAAATGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGCTAGCA--ACGTCAATTGACGTCGCGTTA-TAATTTCCCCGAACTGTTNAGATAC---ATNNATGAGTTCCAGTTATAAATAAGTCATTCA--------------TAAAGTT----TG------T---------------ATTACATCCATTTGGTGTTT
gi|1 : ATGTAAA-ATGAATTTTACTATGGGTCTTCCGAAGGGAAGAAAATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAACTGGCAGGAAGTGACGTAACATCAAA-A-CATTTAAGAGGAAATGATGTAATGTAAGCA--ACGCCAAATGACGTTGCGTCA-TAATTTCCTTGAACTTTTCAGACAC---A-AAATGAGTTCCAGCTATCAATAAGTCGTTCA--------------TAAGGTT----TG------T---------------ATTACATCCATTTGGTGTTT
gi|10 : ctatttgTGACAGGAAATGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGCTAGCA--AAGTCAATTGACGTCGCGTTA-TA
gi|11 : TGACAGGAAATGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGCTAGCA--AAGTCAATTGACGTCGCGTTA-TA
gi|12 : CTGACAGGAAATGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGAGGCTA-------GTTAGTTGACGTTGC
gi|13 : GACAGAAAATGACGTAAAGTCAAA-A-CATAAAAGAGGAAATGATGTAACAGCAATA--ACGCCAAATGTCGTtag
gi|14 : -ATGAATTTTACTATTGATCTTCCAAAGGGAAGAAAATAT
gi|15 : actgtatgtattg-ATAAAATTTACTATCGATCTTCCGAAGGGAAGAAAA
gi|16 : atTAAAATTTACTATCAATCTTCAGAAGGGAAGAAAaa
gi|2 : ct-ATAAAATTTACTATCAGTATTCCGAATGGAAGAAAATATA
gi|2 : ttttCTGACAGGAAATGACGTAACGTCAAA-C-CATTAAAAAGGAAATGACATTATGTTAGCA--ATGTCAATTGAC-------------------------ATTAAGATAC---ATACA-GAGTTCCAATTAGAAGTAAGTCATTTA--------------CAGAGCT----AG------T---------------ATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgacaggaaatgacgtaacgtcaaaccattaaaaaggaaatgacattatgttagcaatgtcaattgacattaagatacatacagagttccaattagaagtaagtcatttacagagctagtatgtaaaa
gi|3 : ttttataaaatttactatcagtattccgaatggaagaaaatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAAAATTAACTATCAATATTCCAAAGGGAAGAAAATACAgtaaaa
gi|3 : ttattCTGACAGGAAATGACGTAACGTCAAA-A-CATAAAAAAGGAAATGACGTGACACTAGCA--ATGTCAATTGACGTCGCGTTA-GAATTT-CCCGAACTATCAAGATAC---ATACAT-AGTTCCAGTTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgacaggaaatgacgtaacgtcaaaacataaaaaaggaaatgacgtgacactagcaatgtcaattgacgtcgcgttagaatttcccgaactatcaagatacatacatagttccagttat
gi|4 : ttatttaaaattaactatcaatattccaaagggaagaaaatacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-ATAAAATTTACTATCGATCTTCCGAAGGGAAGAAAATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGACTGGAAATGAA-TAACGT-----CAAA-A-CATTAAAAATGAAATGACGTG-CGTAAGCA--ACGTCAATTGACGTCACGTT
gi|5 : aattatTCTAAC-ATAAAATT-ACTATCAATCTTCCGAAGGGAAGAAAA----TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGACAGGAAGTGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGCTAGCGTTACATCATTT
gi|6 : CTGGCAAGAAATGACGTAGCGTCAAA-A-CATTTAAAAGAAAATGATGCAACGTTAACA--ACGCCAAATGACGTCACGTCA-GAATTTCCCCAAGCTGTTCAGACACATAATGAGTGAGTTCCAGCTATCAACAAGTCATTCA--------------TAAAGTTAGTATG------TGAAATTTGATTTAACATTACATCTATTTGGTGTTTc
gi|7 : CTGACAGGAAATGACTTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGTTAGCA--ACGTCAATTGATGTTGAGTTA-GAATTT-CCTAAACTTTTAAGATAC---ATACAT-AGTTCCAGTTATAAATAAGTCATTCACAATAGTTAGTATGTAAAATT----TGATTTAAT---------------GTTACATCCATTTGGTGTTTt
gi|8 : AAATATAAAATT-ACTATCAATCTTCTGAAGGGAAGAAAA----TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGACAGGAAATGACGTAACGTCAt
gi|9 : ATAACGTAACGTTAAACATCATTGTA-------TAATGTGAA--TAGTG--CCG--GATAG-CGTCGCGTTAGT--TTTTCCCGAATTGTTTGGATAC---ACA---GAGTTTCAGTTAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111
lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 2222222 0000000000000000000000000000000000000000000000000
lowQualScore : 1 5 4 5 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3 3 0 44 888 3 1 1 1 5555555 1 4444444444444444444444444444444444444444444444444
lowQualScore : . . . . ........................................................................................................................ . . . .. ... . . . . ....... . .................................................
lowQualScore : 0 7 8 0 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3 3 8 66 111 5 0 0 7 7777777 0 8888888888888888888888888888888888888888888888888
consensus : NNNNNNNATNTAAA-ATAAAATTTACTATCGATCTTCCGAAGGGAAGAAAATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAACTGACAGGAAATGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGCTAGCA--ACGTCAATTGACGTCGCGTTA-TAATTTCCCCGAACTNTTNAGATACATA---CATGAGTTCCAGTTATNAATAAGTCATTCA--------------TAAAGTT----TG------T---------------ATTACATCCATTTGGTGTTT
Reference ( family-707 ) : NNNNNNNATNTAAA-ATAAAATTTACTATCGATCTTCCGAAGGGAAGAAAATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNANCTGACAGGAAATGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGCTAGCA--ACGTCAATTGACGTCGCGTTA-TAATTTCCCCGAACTNTTNAGATACATA---CATGAGTTCCAGTTATNAATAAGTCATTCA--------------TAAAGTT----TG------T---------------ATTACATCCATTTGGTGTTT
gi|1 : ATGTAAA-ATGAATTTTACTATGGGTCTTCCGAAGGGAAGAAAATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAACTGGCAGGAAGTGACGTAACATCAAA-A-CATTTAAGAGGAAATGATGTAATGTAAGCA--ACGCCAAATGACGTTGCGTCA-TAATTTCCTTGAACTTTTCAGACACA-A---AATGAGTTCCAGCTATCAATAAGTCGTTCA--------------TAAGGTT----TG------T---------------ATTACATCCATTTGGTGTTT
gi|10 : ctatttgTGACAGGAAATGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGCTAGCA--AAGTCAATTGACGTCGCGTTA-TA
gi|11 : TGACAGGAAATGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGCTAGCA--AAGTCAATTGACGTCGCGTTA-TA
gi|12 : CTGACAGGAAATGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGAGGCTA-------GTTAGTTGACGTTGC
gi|13 : GACAGAAAATGACGTAAAGTCAAA-A-CATAAAAGAGGAAATGATGTAACAGCAATA--ACGCCAAATGTCGTtag
gi|14 : -ATGAATTTTACTATTGATCTTCCAAAGGGAAGAAAATAT
gi|15 : actgtatgtattg-ATAAAATTTACTATCGATCTTCCGAAGGGAAGAAAA
gi|16 : atTAAAATTTACTATCAATCTTCAGAAGGGAAGAAAaa
gi|2 : ct-ATAAAATTTACTATCAGTATTCCGAATGGAAGAAAATATA
gi|2 : ttttCTGACAGGAAATGACGTAACGTCAAA-C-CATTAAAAAGGAAATGACATTATGTTAGCA--ATGTCAATTGAC-------------------------ATTAAGATACATA---CA-GAGTTCCAATTAGAAGTAAGTCATTTA--------------CAGAGCT----AG------T---------------ATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgacaggaaatgacgtaacgtcaaaccattaaaaaggaaatgacattatgttagcaatgtcaattgacattaagatacatacagagttccaattagaagtaagtcatttacagagctagtatgtaaaa
gi|3 : ttttataaaatttactatcagtattccgaatggaagaaaatatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAAAATTAACTATCAATATTCCAAAGGGAAGAAAATACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGA-----CAGGAAATGACGTAACGTCAAA-A-CATAAAAAAGGAAATGACGTGACACTAGCA--ATGTCAATTGACGTCGCGTTA-GAATTT-CCCGAACTATCAAGATACATA---CAT-AGTTCCAGTTATgtaaaa
gi|4 : ttatt-ATAAAATTTACTATCGATCTTCCGAAGGGAAGAAAATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGA-CT----GGAAATGA-ATAACGTCAAA-A-CATTAAAAATGAAATGACGTG-CGTAAGCA--ACGTCAATTGACGTCACGTT
gi|5 : aattatTCTAAC-ATAAAATT-ACTATCAATCTTCCGAAGGGAAGAAAA----TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGACAGGAAGTGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGCTAGCGTTACATCATTT
gi|6 : CTGGCAAGAAATGACGTAGCGTCAAA-A-CATTTAAAAGAAAATGATGCAACGTTAACA--ACGCCAAATGACGTCACGTCA-GAATTTCCCCAAGCTGTTCAGACACATAATGAGTGAGTTCCAGCTATCAACAAGTCATTCA--------------TAAAGTTAGTATG------TGAAATTTGATTTAACATTACATCTATTTGGTGTTTc
gi|7 : CTGACAGGAAATGACTTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGTTAGCA--ACGTCAATTGATGTTGAGTTA-GAATTT-CCTAAACTTTTAAGATACATA---CAT-AGTTCCAGTTATAAATAAGTCATTCACAATAGTTAGTATGTAAAATT----TGATTTAAT---------------GTTACATCCATTTGGTGTTTt
gi|8 : AAATATAAAATT-ACTATCAATCTTCTGAAGGGAAGAAAA----TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGACAGGAAATGACGTAACGTCAt
gi|9 : ATAACGTAACGTTAAACATCATTGTA-------TAATGTGAA--TAGTG--CCG--GATAG-CGTCGCGTTAGT--TTTTCCCGAATTGTTTGGATACACA------GAGTTTCAGTTAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111
lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 2222222 0000000000000000000000000000000000000000000000000
lowQualScore : 1 5 4 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3 3 0 44 888 3 1 1 1 5555555 1 4444444444444444444444444444444444444444444444444
lowQualScore : . . . .............................................................................................................................. . . . .. ... . . . . ....... . .................................................
lowQualScore : 0 7 8 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 3 8 66 111 5 0 0 7 7777777 0 8888888888888888888888888888888888888888888888888
consensus : NNNNNNNATNTAAA-ATAAAATTTACTATCGATCTTCCGAAGGGAAGAAAATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAACTGACAGGAAATGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGCTAGCA--ACGTCAATTGACGTCGCGTTA-TAATTTCCCCGAACTNTTNAGATACATA---CATGAGTTCCAGTTATNAATAAGTCATTCA--------------TAAAGTT----TG------T---------------ATTACATCCATTTGGTGTTT
Reference ( family-707 ) : NNNNNNNATNTAAA-ATAAAATTTACTATCGATCTTCCGAAGGGAAGAAAATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAACTGACAGGAAATGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGCTAGCA--ACGTCAATTGACGTCGCGTTA-TAATTTCCCCGAACTNTTNAGATACATA---CATGAGTTCCAGTTATNAATAAGTCATTCA--------------TAAAGTT----TG------T---------------ATTACATCCATTTGGTGTTT
gi|1 : ATGTAAA-ATGAATTTTACTATGGGTCTTCCGAAGGGAAGAAAATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAACTGGCAGGAAGTGACGTAACATCAAA-A-CATTTAAGAGGAAATGATGTAATGTAAGCA--ACGCCAAATGACGTTGCGTCA-TAATTTCCTTGAACTTTTCAGACACA-A---AATGAGTTCCAGCTATCAATAAGTCGTTCA--------------TAAGGTT----TG------T---------------ATTACATCCATTTGGTGTTT
gi|10 : ctatttgTGACAGGAAATGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGCTAGCA--AAGTCAATTGACGTCGCGTTA-TA
gi|11 : TGACAGGAAATGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGCTAGCA--AAGTCAATTGACGTCGCGTTA-TA
gi|12 : CTGACAGGAAATGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGAGGCTA-------GTTAGTTGACGTTGC
gi|13 : GACAGAAAATGACGTAAAGTCAAA-A-CATAAAAGAGGAAATGATGTAACAGCAATA--ACGCCAAATGTCGTtag
gi|14 : -ATGAATTTTACTATTGATCTTCCAAAGGGAAGAAAATAT
gi|15 : actgtatgtattg-ATAAAATTTACTATCGATCTTCCGAAGGGAAGAAAA
gi|16 : atTAAAATTTACTATCAATCTTCAGAAGGGAAGAAAaa
gi|2 : ct-ATAAAATTTACTATCAGTATTCCGAATGGAAGAAAATATA-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGA-----CAGGAAATGACGTAACGTCAAA-C-CATTAAAAAGGAAATGACATTATGTTAGCA--ATGTCAATTGAC-------------------------ATTAAGATACATA---CA-GAGTTCCAATTAGAAGTAAGTCATTTA--------------CAGAGCT----AG------T---------------AT
gi|3 : ttttTAAAATTAACTATCAATATTCCAAAGGGAAGAAAATACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT-----GACAGGAAATGACGTAACGTCAAA-A-CATAAAAAAGGAAATGACGTGACACTAGCA--ATGTCAATTGACGTCGCGTTA-GAATTT-CCCGAACTATCAAGATACATA---CAT-AGTTCCAGTTATgtaaaa
gi|4 : ttatt-ATAAAATTTACTATCGATCTTCCGAAGGGAAGAAAATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTG-ACT----GGAAATGA-ATAACGTCAAA-A-CATTAAAAATGAAATGACGTG-CGTAAGCA--ACGTCAATTGACGTCACGTT
gi|5 : aattatTCTAAC-ATAAAATT-ACTATCAATCTTCCGAAGGGAAGAAAA----TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGACAGGAAGTGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGCTAGCGTTACATCATTT
gi|6 : CTGGCAAGAAATGACGTAGCGTCAAA-A-CATTTAAAAGAAAATGATGCAACGTTAACA--ACGCCAAATGACGTCACGTCA-GAATTTCCCCAAGCTGTTCAGACACATAATGAGTGAGTTCCAGCTATCAACAAGTCATTCA--------------TAAAGTTAGTATG------TGAAATTTGATTTAACATTACATCTATTTGGTGTTTc
gi|7 : CTGACAGGAAATGACTTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGTTAGCA--ACGTCAATTGATGTTGAGTTA-GAATTT-CCTAAACTTTTAAGATACATA---CAT-AGTTCCAGTTATAAATAAGTCATTCACAATAGTTAGTATGTAAAATT----TGATTTAAT---------------GTTACATCCATTTGGTGTTTt
gi|8 : AAATATAAAATT-ACTATCAATCTTCTGAAGGGAAGAAAA----TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGACAGGAAATGACGTAACGTCAt
gi|9 : ATAACGTAACGTTAAACATCATTGTA-------TAATGTGAA--TAGTG--CCG--GATAG-CGTCGCGTTAGT--TTTTCCCGAATTGTTTGGATACACA------GAGTTTCAGTTAT
blockSeqs : C T T TATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGA C T TT TA C A A T ATGAGTG A CAATAGTTAGTATGTAAAATTTGATTTAAT
blockSeqs : . T TATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGA . . . TA T A A T CAG C TAAAGTTAGTATGTGAAATTTGATTTAAC
blockSeqs : . T TACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT . . . GA . G C T CAT A CAGAGCTAGT
blockSeqs : . T TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . GA . T A T CAT
blockSeqs : . A TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . GA . G T C G
blockSeqs : . T . . . GT
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqCons : CAT****
originalCons : NNNNNNNATNTAAA-ATAAAATTTACTATCGATCTTCCGAAGGGAAGAAAATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAACTGACAGGAAATGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGCTAGCA--ACGTCAATTGACGTCGCGTTA-TAATTTCCCCGAACTNTTNAGATACATA---CATGAGTTCCAGTTATNAATAAGTCATTCA--------------TAAAGTT----TG------T---------------ATTACATCCATTTGGTGTTT
finalCons : NNNNNNNATNTAAA-ATAAAATTTACTATCGATCTTCCGAAGGGAAGAAAATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAACTGACAGGAAATGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGCTAGCA--ACGTCAATTGACGTCGCGTTA-TAATTTCCCCGAACTNTTNAGATACATACAT----AGTTCCAGTTATNAATAAGTCATTCA--------------TAAAGTT----TG------T---------------ATTACATCCATTTGGTGTTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111
lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 22222 0000000000000000000000000000000000000000000000000
lowQualScore : 1 5 4 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3 3 0 44 888 3 1 1 7 2 33333 1 4444444444444444444444444444444444444444444444444
lowQualScore : . . . .............................................................................................................................. . . . .. ... . . . . . ..... . .................................................
lowQualScore : 0 7 8 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 3 8 66 111 5 0 0 3 5 33333 0 8888888888888888888888888888888888888888888888888
consensus : NNNNNNNATNTAAA-ATAAAATTTACTATCGATCTTCCGAAGGGAAGAAAATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAACTGACAGGAAATGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGCTAGCA--ACGTCAATTGACGTCGCGTTA-TAATTTCCCCGAACTNTTNAGATACATACAT-----AGTTCCAGTTATNAATAAGTCATTCA--------------TAAAGTT----TG------T---------------ATTACATCCATTTGGTGTTT
Reference ( family-707 ) : NNNNNNNATNTAAA-ATAAAATTTACTATCGATCTTCCGAAGGGAAGAAAATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAACTGACAGGAAATGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGCTAGCA--ACGTCAATTGACGTCGCGTTA-TAATTTCCCCGAACTNTTNAGATACATACAT-----AGTTCCAGTTATNAATAAGTCATTCA--------------TAAAGTT----TG------T---------------ATTACATCCATTTGGTGTTT
gi|1 : ATGTAAA-ATGAATTTTACTATGGGTCTTCCGAAGGGAAGAAAATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAACTGGCAGGAAGTGACGTAACATCAAA-A-CATTTAAGAGGAAATGATGTAATGTAAGCA--ACGCCAAATGACGTTGCGTCA-TAATTTCCTTGAACTTTTCAGACACA-AAATG----AGTTCCAGCTATCAATAAGTCGTTCA--------------TAAGGTT----TG------T---------------ATTACATCCATTTGGTGTTT
gi|10 : ctatttgTGACAGGAAATGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGCTAGCA--AAGTCAATTGACGTCGCGTTA-TA
gi|11 : TGACAGGAAATGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGCTAGCA--AAGTCAATTGACGTCGCGTTA-TA
gi|12 : CTGACAGGAAATGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGAGGCTA-------GTTAGTTGACGTTGC
gi|13 : GACAGAAAATGACGTAAAGTCAAA-A-CATAAAAGAGGAAATGATGTAACAGCAATA--ACGCCAAATGTCGTtag
gi|14 : -ATGAATTTTACTATTGATCTTCCAAAGGGAAGAAAATAT
gi|15 : actgtatgtattg-ATAAAATTTACTATCGATCTTCCGAAGGGAAGAAAA
gi|16 : atTAAAATTTACTATCAATCTTCAGAAGGGAAGAAAaa
gi|2 : ct-ATAAAATTTACTATCAGTATTCCGAATGGAAGAAAATATA-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGA-----CAGGAAATGACGTAACGTCAAA-C-CATTAAAAAGGAAATGACATTATGTTAGCA--ATGTCAATTGAC-------------------------ATTAAGATACATACAG-----AGTTCCAATTAGAAGTAAGTCATTTA--------------CAGAGCT----AG------T---------------AT
gi|3 : ttttTAAAATTAACTATCAATATTCCAAAGGGAAGAAAATACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT-----GACAGGAAATGACGTAACGTCAAA-A-CATAAAAAAGGAAATGACGTGACACTAGCA--ATGTCAATTGACGTCGCGTTA-GAATTT-CCCGAACTATCAAGATACATACAT-----AGTTCCAGTTATgtaaaa
gi|4 : ttatt-ATAAAATTTACTATCGATCTTCCGAAGGGAAGAAAATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTG-ACT----GGAAATGA-ATAACGTCAAA-A-CATTAAAAATGAAATGACGTG-CGTAAGCA--ACGTCAATTGACGTCACGTT
gi|5 : aattatTCTAAC-ATAAAATT-ACTATCAATCTTCCGAAGGGAAGAAAA----TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGACAGGAAGTGACGTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGCTAGCGTTACATCATTT
gi|6 : CTGGCAAGAAATGACGTAGCGTCAAA-A-CATTTAAAAGAAAATGATGCAACGTTAACA--ACGCCAAATGACGTCACGTCA-GAATTTCCCCAAGCTGTTCAGACACATA-ATGAGTGAGTTCCAGCTATCAACAAGTCATTCA--------------TAAAGTTAGTATG------TGAAATTTGATTTAACATTACATCTATTTGGTGTTTc
gi|7 : CTGACAGGAAATGACTTAACGTCAAA-A-CATTAAAAAGGAAATGACGTGACGTTAGCA--ACGTCAATTGATGTTGAGTTA-GAATTT-CCTAAACTTTTAAGATACATACAT-----AGTTCCAGTTATAAATAAGTCATTCACAATAGTTAGTATGTAAAATT----TGATTTAAT---------------GTTACATCCATTTGGTGTTTt
gi|8 : AAATATAAAATT-ACTATCAATCTTCTGAAGGGAAGAAAA----TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGACAGGAAATGACGTAACGTCAt
gi|9 : ATAACGTAACGTTAAACATCATTGTA-------TAATGTGAA--TAGTG--CCG--GATAG-CGTCGCGTTAGT--TTTTCCCGAATTGTTTGGATACA--CAG-----AGTTTCAGTTAT