lowQualScore : 3 111 11 11 1 1 1 1 1 222222 5555555555555555555555
lowQualScore : 5 2 1 333 888 1 5 6666 77 11 1 1 1 3 6 4 22 6 4 4 5 6 2 22 5 333 2 22 2 2 0 222222 9999999999999999999999 33
lowQualScore : . . . ... ... . . .... .. .. . . . . . . .. . . . . . . .. . ... . .. . . . ...... ...................... ..
lowQualScore : 8 0 6 555 666 9 7 0000 22 66 9 0 0 0 6 6 88 5 8 8 3 4 2 99 4 777 1 99 2 2 5 666666 1111111111111111111111 44
consensus : TACCAGTCA-TTGTCTTGTT---GCAT-AATTT-T-T----ATTTATAGAAT-TAAGCCCA-TGAAAGACACGAACATTGATTGACAGACACAAACACGAGCGCGTGCGC--GTTAGCACTGTTTGTTTCANAATAANTATTT-CGCGCGCTCCTCGTAAGTTTTCATTGGA--TTAAATGGA---TTT-AGG--GG-GCGTGTTCATCACTGAAGTTGAGTGTGAATTTGAG-GA-AT-T--G---AT-AN---T--TTTGTAGTTGCAT
Reference ( gi|2 ) : TACCAGT-A-TTGTCTTGTT---GCAT-A-TTT-T-T----ATTTATAGAAT-AAAGTTCA-TGAAAGAAACGAACATTGATTGACAGACACAAACACGAGCGCTTGTGC--GTTAGCGCTGTTTGTTTGATAATAATTATGT-CGCGCGCTCCTCGTAAGTTTTCATTGGA--TTAAATGTA---TTT-AGG--GG-GCGGGTTCATCACTGAAAATAATTGTGAATTTGAGCGA-AT-T--G---AT-AT---T--TTTGTAGTTGCAT
gi|1 : TACCTGTCA-TTGTCTTATT---GCAT-AATGT-T-T----ATTCATAGAAT-TAAGCCCA-CTAATGACCCAAACATTGATTGACAGGCACAAACATGAGCGC--GTTCAAGTTAGGACTGTTTGTTTGGTAATATTTATTT-CGCGCGCTCTTCGTAAGTTTTCATTGGA--TTAAAAGGA---TTT-AGA--GG-GCGTGTTCATTAATGAAATCCATTATGAATTTGAGCAATAG-C--G---AT-CA---T--TTTGTAGTTGCA
gi|6 : TACCAGTCA-TGGTCTTGTT---GCAT-A-TTT-TTT----ATTTATTTAAT-TAAGCCCA-TGAAAGACACAAACATTGATTGACAGACACAAACACGAGCGTGTGTGC--TTTAGCATTGTTTGCTTCACAACAAATATTT-CGCGCGCTCCTCGTAAGTTTTCATTGGT--TTAAATGGT---TTT-AGG--GG-GCGTGCTCATCATTGA--------------TTGAG-GG-AT-T--G---CG-ATCA-T--TTCATAGTTGCAT
gi|5 : TACCAGTCA-TGGTCTTGTT---TCAT-A-CTT-TCT----ATTTATAGAAT-TAAGCCCA-TGAAAGACACTTATATTGATTGACAGGCACAAATACG--------------TTCGCACTTTTTGTTTTAAAATAAATATTT-TGCGCGCTCTTCGTAAGTTTTCATTTGA--TTAAATGGA---TTT-AGG--GG-GCATGTTCATCACCGAAGTTGAGTGTGAATTTGAG-GG-AT-T--GCGAAT-A----T--TTTGTAGTTGCAT
gi|10 : TACCAGTCA-TGATCTTGTT---GCAT-AAGTT-T-T----ATTTATAGAAT-TAAGCCCA-TGAAAGACACAAACATTGATTGAAAGACACAAACACGAGCGCGTGTGC--GTTAGCACTGTTTGTTTCAAAATAAATAT-------------TTATAAA--------------TAAATAGA---TTT-AGG--GG-GCGTGTTCATCACTGAAGTTAAGCATGAATTTGAAGGA-TTGT--G---AT-AA---T--TTTGTATTTGCAT
gi|4 : TAGCAGTCA-TTGTCTTGTT---ACAT-A-ATTAG-T----ATTTATTGAATTAAACCCCA-CGAAAGAAACGAACATTGATAAACAGACAAAAACATGTGCGCGTGCAC--GTTAGTATTGTCTGTTTAATAATGATTGGTT-TGCGCAGTCCTCTTAA-TTTTCATTGGA--TTAAACGGA---TTT-AGA--AG-GATTGATCATCACTGAACATTAATGTGAATTTGAGC-A-ATGT--C---ATCAT---T--TT
gi|18 : TACCAGTCA-TTGTCTTGTT---GCACCA-TTT-T-T----ATCTATAGAGC-TAAGCCCA-CGACTGACACAAACACTGACTGACAGACACAAACATGAACGC-----------------GTTTGTTTGATGACAATTATTT-CGCGCGCTCCTCATAAATTTTTATTCAA--TATAATG----------GG--GA-ATGGGTat
gi|15 : TACCAGTCA-TCGTCTTGTT---GCAT-AATTT-T-T----ATTTATAGAAT-TAAGCCCA-TGAAAG--ACAAACATTg
gi|23 : gTACCAGTCA-TTGTCTTGTT---ACAT-AATTT-T-T----ATTCATTGATT-AAA-TT--------------AACATTGATTGACAGACACAAACACGAGTGTGTGCGC--GTTAGCACTGTTCGTTTttgtttcaaaataatttttttcgcgcgctcctcgtaagttatcattggattaaatgaataaagtgggcgtgttcatcattgaagttgagtgtgaatttgagagattgcgatcattttgtagttgca
gi|19 : TACCAGTCA-TGGTCTTGTT---GCAT-AATTT-T-T----ATTTATAGAAT-TAAGCCCA-TGGAAGACACAAACATTGATTTACAGACA
gi|25 : TACCAGTCA-TGGTCTTGTT---GCATAA-TTG-T-A----ATTTATAGAAT-TAAGCCCAGCGAAA---------------TAACAGACACAAAAACGAGCGCATGCGC--tgctcctcataagtttttattagattaaatagatttatgaggcgtgttgaagttgagtgtgaatt
gi|20 : TACCAGTCA-TTGTCATGTT---GCATTA-TTT-C-T----ATTTATAGAAC-TAAGCT
gi|30 : gTACCAGTCA-TTGTCTTGTT---GCATAA-TTT-T-T----ATCTATgcgctagacgggcccggcgtattaagtataaatacactattacgtcagcatgtacagcagttaatgctatattcgaaataaagatt
gi|9 : ACCAGT-AATGGTCTTGTT---GCAT----TT-T-T-----TTTAT---------------TGATAGACACAGACATTGATTGACAGACATAAACACGAGCGCGTGATC--GTTAGAACTGTTTGTTTCAAAATAAATATTT-TGCGCGCTCCTCGTAAGTTTTCAATGGA--TTAAATGGA---TTA-AGG--GG-GCGTGTTCATCATTGAAGTTGAGTGTGAATTTGAG-GG-AT-T--GCA-AC-CA---T--TTTGTAGTTGCAT
gi|12 : ACCAGTCA-TGGTATTGAT---GCAT-AATTT-T-T----ATTCATAGAAT-TAAGCCAA-TGAAACACACAAAAATTGATTGACAGACACAAACACGAGCGCGTGCGC--GTTAGCACTGTTTGCTTCAAAATAAATATTT-CGCGCGCTCTTCGTTAGTTTTCATTGGAAGTTGAGTGTGAATTTT-AGG--G
gi|11 : ACCAGTCA-TCGTCTTATT---ACAT-AATTT-G-T----ATTTATAGAAT-TAAGCCC---------------------TTGATAGACACAAACA-------TTG-----ATTGACA--GTTTGTTTCAAAATAAATACTT-CGCGTGCTCCTCGTGAGTTTTCATTGGA--TTAAATGAA---TTA-AGG--GG-GCGTGTTTATCATTGAAGATGAATGTGAATTTGAG-GG-AT-TGCG---AT-AT---T--TGTGTAGTTTCATattgcgattattttatagttgcat
gi|16 : ACCAGTCA-TCGTCTTGTT---GCAT-A-ATT-TAT----ATTTGTAGAAT-CAAGCCCA-TGAAAGAg
gi|3 : CAGTCA-TTGTGTTGTT---GTAT-AATTT-T-T----ATATATATATT-TAAGCTCA-AGAACGAAACGAACATAAATTGACAGACACAAATACGAGCGCGTGCGC--GTTAGCAC----TGTTTGGTAATAAGTATTT-CCTGCGCTCCTCGTAAGTTTTCTTTTGA--TTAAATGGA---TTT-AGG--GATGCGCGTTCATCACTGAAAATGAATGTGAATTTGAGCG---T-T--G---GG-ATCA-T--TTTGAAGTTGCAcgcgcgttagcactctttgtttcaaaataaatattttgcgctctcctcgtaagttttcattggattgaatggatttagggggcgtattcatcattgaaattgagtgtgaatttgggatcattttgtagttgcgt
gi|8 : CAGTCA-TTGCCTTATC---GCGT-A-TTT-T-TC---ATTTATAGATT-TAAGCCCA-TGAAA----CGA----T--TTGACAGACA-AAACCCGAGGGTGTGCGC--GTTAGCATTGTTTGTTTGATAATAATTATTT-CGTGCGCTTCTCGAAAGTTTTCATTGGA--TTAAATGGA---TTA-AGG--AG-GCATGTTCATCATTAAAATTGAATGTGAATTTGAGAGA----T--C---A-------T--TTTGTTGTTGCAT
gi|7 : ta-A-TTGTCTTTTT---GCAT-A-TTT-T-TTTTTATTTATAGAAT------TAA-TAACAAAAAAG-----TCAT-GACAGACAAAAACACCAGCGCTTGCGC--GTTAGCACTGTTTGTTTGATACTAGTTATTT-CGCGCGCTTCTTTTATGTTTTCATTGGA--TTAAATGGA---TTG-AGG--GG-GCGTGTTTATCACTAAAATCGAATGTGAATTTGGGTGA-GT--------GT-ACTCAT--TTTGTAGTTGC
gi|24 : aatc-TTGTCTTATTATTGCAT-AACTT-T-T----ATTTTTATAAT-TAAGCACA-TGAAAGAACCGAACATAGATTGACAGGCACAAGTACGATCGC--GTGC--
gi|14 : -TTT-T-T----ATTTATAGAA-----------------AGACAAATATTGATTTACAGACATAATCACGAGCGTATGTGC--GTTAGCACTGTTTGTTTCAAAATAAAAATTT-CGCGCGCTGCTCGTAAA-TTTCATTCGA--TTAAATGAA---TTT-AGT--GA-GCGCGTTCATCATTGAAGTTTAGTGTGAATTTGAGGGA-TTGT--G---AT-CA---T--TTTGCAGTTACAa
gi|13 : tatTGGAAT-TAAGCCCA-TGAAAGACACAAACATTGATTGACAGACATAAACTCGAGCGCGTGCGC--GTTAGCACTGTTTGTTTCAAAATAAATATTT-CGCGCGCTCCTCGTTAGTTTTCATTGGA--TTAAATGGA---TTT-A-T--GG-GCGTGTTAATCATTGAAGTTGAATGTGAATTGGAG-GG-AT-T--G---TG-AT---CAATTTGTAGTTACAT
gi|17 : AAGCACA-TGAAAAA---GAACA--AA--AACAGACATAAACAAGAGCGTGTGTGC--GTTAGCACTGTT----TGATAATGATTATTT-CGCGCGCTTCTCGTACGTTTGTAATGGA--TTAAATGGC---TTTAAGG--AG-GCGTGTGCATTACTGAAATTGAATGTGAATTTAAGCGA-AT-C--G---AT-------------CAGTTGCAT
gi|21 : GGCACAAATATGAGCGCGTGCGA--GTTACCACTGTTTGTTTGATAATAATTATTT-CGCGCACTCGTCGTAAA-TTTCATTACA--T--AATGGA----TT-AGGATGG-GGGGG
gi|16 : cacggaaaggcgcggcacggaaaggcacGCGC--GTTAGCACTCTTTGTTTCAAAATAAATATTT-TGCGCTCTCCTCGTAAGTTTTCATTGGA--TTGAATGGA---TTT-AGG--GG-GCGTATTCATCATTGAAATTGAGTGTGAATTTGG-----------G---AT-CA---T--TTTGTAGTTGCGTgg
gi|15 : accagtcatcgtcttgttgcataatttatatttgtagaatcaagcccatgaaagacTTTGTTTCAAAATAATTTTTTTCGCGCGCTCCTCGTAAGTTATCATTGGA--TTAAATGAA---TAA-AGT--GG-GCGTGTTCATCATTGAAGTTGAGTGTGAATTTGAGAG--AT-T--G---CG-ATCA-T--TTTGTAGTTGCA
gi|19 : gtaccagtcatcgtcttgttgcataatttttatttatagaattaagcccatgaaagacaaacatGCTCCTCATAAGTTTTTATTAGA--TTAAATAGA---TTT-ATG--AG-GCGTGT-------TGAAGTTGAGTGTGAATT
gi|29 : taccagtcatggtcttgttgcataatttttatttatagaattaagcccatggaagacacaaacattgatttacagacatCATCACTGAAATCGAATGTGAATTTGAGCGA----T--C---A-------T--TTTGTAGTTGCAT
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): AGGTTAGAAGTTATATGGTATTTTCTACGCGAGTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCA
Unaligned ( gi|26 ): GTTGGAAGTTATATGATATTTTCTACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|27 ): AAGTTATATGTTATTTTCTACGTAACCTCTAAATGGGTTAAATGTTGATCTACGGTCTCATA
Unaligned ( gi|28 ): AGATAAGAAGTTATATGGTATTTTCTACGCCAGTAGATGTTGTTCTACGTTCTTGTTCCT
Unaligned ( gi|31 ): CAGGTTAGAAGTTATATGGTATTTCCTACGC
Unaligned ( gi|32 ): TAGGTAAGAAGTTATATGGAATTTTCTACGC
Alignments
lowQualScore : 3333333333 11
lowQualScore : 1 333 3333 1 1 0 33 1 2 1 1 2 22 2 22 4444 2 2 1 5555555555 777 44
lowQualScore : . ... .... . . . .. . . . . . .. . .. .... . . . .......... ... ..
lowQualScore : 1 333 3333 8 8 9 77 9 7 7 0 1 88 0 99 5555 1 2 3 1111111111 444 99
consensus : TACCAGTCATTGTCTTGTT---GCATA---ATTTTTATTTATAGAATTAAGCCC-A-TGAAAGACACGAACATTGATTGACA-GACACAAACACGAGCGCGTGCGCGTTAGCACTGTTTGTTTCANAATAANTATTT-CGCGCGCTCCTCGTAAGTTTTCATTGGA--TTAAATG-GA--TT----T-AGGGG-GCGTGTTCATCACTGAAGTTGAGTGTGAATTTGAG-GGAT--T--G---ATCATTTTGTAGTTGCAT
Reference ( family-685 ) : TACCAGTCATTGTCTTGTT---GCATA---ATTTTTATTTATAGAATTAAGCCC-A-TGAAAGACACGAACATTGATTGACA-GACACAAACACGAGCGCGTGCGCGTTAGCACTGTTTGTTTCANAATAANTATTT-CGCGCGCTCCTCGTAAGTTTTCATTGGA--TTAAATG-GA--TT----T-AGGGG-GCGTGTTCATCACTGAAGTTGAGTGTGAATTTGAG-GAAT--T--G---ATANTTTTGTAGTTGCAT
gi|1 : TACCTGTCATTGTCTTATT---GCATA---ATGTTTATTCATAGAATTAAGCCC-A-CTAATGACCCAAACATTGATTGACA-GGCACAAACATGAGCGCGTTCAAGTTAGGACTGTTTGTTTGGTAATATTTATTT-CGCGCGCTCTTCGTAAGTTTTCATTGGA--TTAAAAG-GA--TT----T-AGAGG-GCGTGTTCATTAATGAAATCCATTATGAATTTGAG-CAATAGC--G---ATCATTTTGTAGTTGCA
gi|10 : TACCAGTCATGATCTTGTT---GCATA---AGTTTTATTTATAGAATTAAGCCC-A-TGAAAGACACAAACATTGATTGAAA-GACACAAACACGAGCGCGTGTGCGTTAGCACTGTTTGTTTCAAAATAAATATTT-------------ATAAA--------------TAAATA-GA--TT----T-AGGGG-GCGTGTTCATCACTGAAGTTAAGCATGAATTTGAA-GGATTGT--G---ATAATTTTGTATTTGCAT
gi|11 : ACCAGTCATCGTCTTATT---ACATA---ATTTGTATTTATAGAATTAAGCCC----------------------TTGATA-GACACAAACAT-------TG---ATTGACA--GTTTGTTTCAAAATAAATACTT-CGCGTGCTCCTCGTGAGTTTTCATTGGA--TTAAATG-AA--TT----A-AGGGG-GCGTGTTTATCATTGAAGATGAATGTGAATTTGAG-GGAT--TGCG---ATATTTGTGTAGTTTCAT
gi|12 : ACCAGTCATGGTATTGAT---GCATA---ATTTTTATTCATAGAATTAAGCCA-A-TGAAACACACAAAAATTGATTGACA-GACACAAACACGAGCGCGTGCGCGTTAGCACTGTTTGCTTCAAAATAAATATTT-CGCGCGCTCTTCGTTAGTTTTCATTGGAAGTTGAGTGTGAATTT----T-AGGGg
gi|13 : TGGAATTAAGCCC-A-TGAAAGACACAAACATTGATTGACA-GACATAAACTCGAGCGCGTGCGCGTTAGCACTGTTTGTTTCAAAATAAATATTT-CGCGCGCTCCTCGTTAGTTTTCATTGGA--TTAAATG-GA--TT----T-A-TGG-GCGTGTTAATCATTGAAGTTGAATGTGAATTGGAG-GGATTGT--G---ATCAATTTGTAGTTACATattgcgattattttatagttgcat
gi|14 : TA---TTTTTTATTTATAGAA---------------AGACA--AATATTGATTTACA-GACATAATCACGAGCGTATGTGCGTTAGCACTGTTTGTTTCAAAATAAAAATTT-CGCGCGCTGCTCGTAAA-TTTCATTCGA--TTAAATG-AA--TT----T-AGTGA-GCGCGTTCATCATTGAAGTTTAGTGTGAATTTGAG-GGATTGT--G---ATCATTTTGCAGTTACA
gi|15 : TACCAGTCATCGTCTTGTT---GCATA---ATTTTTATTTATAGAATTAAGCCC-A-TGAAAGACA--AACATT
gi|15 : gTTTGTTTCAAAATAATTTTTTTCGCGCGCTCCTCGTAAGTTATCATTGGA--TTAAATG-AA--TA----A-AGTGG-GCGTGTTCATCATTGAAGTTGAGTGTGAATTTGAG-AGAT--TGCG---ATCATTTTGTAGTTGCAttgtttcaaaataatttttttcgcgcgctcctcgtaagttatcattggattaaatgaataaagtgggcgtgttcatcattgaagttgagtgtgaatttgagagattgcgatcattttgtagttgca
gi|16 : gtaccagtcatcgtcttgttgcataatttttatttatagaattaagcccatgaaagacaaacatACCAGTCATCGTCTTGTT---GCATA---ATTTATATTTGTAGAATCAAGCCC-A-TGAAAGACGCG
gi|16 : GCGCGTTAGCACTCTTTGTTTCAAAATAAATATTT-TGCGCTCTCCTCGTAAGTTTTCATTGGA--TTGAATG-GA--TT----T-AGGGG-GCGTATTCATCATTGAAATTGAGTGTGAATTTGG-----------G---ATCATTTTGTAGTTGCGTcgttagcactctttgtttcaaaataaatattttgcgctctcctcgtaagttttcattggattgaatggatttagggggcgtattcatcattgaaattgagtgtgaatttgggatcattttgtagttgcgt
gi|17 : accagtcatcgtcttgttgcataatttatatttgtagaatcaagcccatgaaagacAAGCAC-A-TGAAAAA---GAACA--AA--AACA-GACATAAACAAGAGCGTGTGTGCGTTAGCACTGTTTG----ATAATGATTATTT-CGCGCGCTTCTCGTACGTTTGTAATGGA--TTAAATG-GC--TT----TAAGGAG-GCGTGTGCATTACTGAAATTGAATGTGAATTTAAGCGAAT--C--G---AT-------CAGTTGCAT
gi|18 : TACCAGTCATTGTCTTGTT---GCACC---ATTTTTATCTATAGAGCTAAGCCC-A-CGACTGACACAAACACTGACTGACA-GACACAAACATGAACGCGT---------------TTGTTTGATGACAATTATTT-CGCGCGCTCCTCATAAATTTTTATTCAA--TATAATG-G
gi|19 : TACCAGTCATGGTCTTGTT---GCATA---ATTTTTATTTATAGAATTAAGCCC-A-TGGAAGACACAAACATTGATTTACA-GACAggaatgggtg
gi|19 : GCTCCTCATAAGTTTTTATTAGA--TTAAATA-GA--TT----T-ATGAG-GCGTGT-------TGAAGTTGAGTGTGAATTtgctcctcataagtttttattagattaaatagatttatgaggcgtgttgaagttgagtgtgaatt
gi|2 : taccagtcatggtcttgttgcataatttttatttatagaattaagcccatggaagacacaaacattgatttacagacatTACCAGT-ATTGTCTTGTT---GCATA----TTTTTATTTATAGAATAAAGTTC-A-TGAAAGAAACGAACATTGATTGACA-GACACAAACACGAGCGCTTGTGCGTTAGCGCTGTTTGTTTGATAATAATTATGT-CGCGCGCTCCTCGTAAGTTTTCATTGGA--TTAAATG-TA--TT----T-AGGGG-GCGGGTTCATCACTGAAAATAATTGTGAATTTGAGCGAAT--T--G---ATATTTTTGTAGTTGCAT
gi|20 : TACCAGTCATTGTCATGTT---GCATT---ATTTCTATTTATAGAACTAAGC
gi|21 : gGAAAGGCGCGG-CACGGAAAGGCACGGCACAAATATGAGCGCGTGCGAGTTACCACTGTTTGTTTGATAATAATTATTT-CGCGCACTCGTCGTAAA-TTTCATTACA--T--AATG-GA--TTAGGAT-GGGGG-Gtgcgctagacgggcccggcgtattaagtataaatacactattacgtcagcatgtacagcagttaatgctatattcgaaataaagatt
gi|23 : cacgTACCAGTCATTGTCTTGTT---ACATA---ATTTTTATTCATTGA-TTAA---------------ATTAACATTGATTGACA-GACACAAACACGAGTGTGTGCGCGTTAGCACTGTTCGTTTggg
gi|24 : TTGTCTTATTATTGCATA---ACTTTTATTTTTATAATTAAGCAC-A-TGAAAGAACCGAACATAGATTGACA-GGCACAAGTACGATCGCGTGC
gi|25 : TACCAGTCATGGTCTTGTT---GCATA---ATTGTAATTTATAGAATTAAGCCC-AGCGAAA---------------TAACA-GACACAAAAACGAGCGCATGCGCa
gi|29 : CATCACTGAAATCGAATGTGAATTTGAG-------C--G---ATCATTTTGTAGTTGCAT
gi|3 : CAGTCATTGTGTTGTT---GTATA---ATTTTTATATATATATTTAAGCTC-A-AGAACGAAACGAACATAAATTGACA-GACACAAATACGAGCGCGTGCGCGTTAGCACTGTTTGGT----AATAAGTATTT-CCTGCGCTCCTCGTAAGTTTTCTTTTGA--TTAAATG-GA--TT----T-AGGGATGCGCGTTCATCACTGAAAATGAATGTGAATTTGAGCG--T--TGGG---ATCATTTTGAAGTTGCA
gi|30 : TACCAGTCATTGTCTTGTT---GCATA---ATTTTTATCTAT
gi|4 : TAGCAGTCATTGTCTTGTT---ACATA---ATTAGTATTTATTGAATTAAACCCCA-CGAAAGAAACGAACATTGATAAACA-GACAAAAACATGTGCGCGTGCACGTTAGTATTGTCTGTTTAATAATGATTGGTT-TGCGCAGTCCTCTTAA-TTTTCATTGGA--TTAAACG-GA--TT----T-AGAAG-GATTGATCATCACTGAACATTAATGTGAATTTGAG-CAATG-T--C---ATCATTTTAT
gi|5 : TACCAGTCATGGTCTTGTT---TCATA---CTTTCTATTTATAGAATTAAGCCC-A-TGAAAGACACTTATATTGATTGACA-GGCACAAATACG------------TTCGCACTTTTTGTTTTAAAATAAATATTT-TGCGCGCTCTTCGTAAGTTTTCATTTGA--TTAAATG-GA--TT----T-AGGGG-GCATGTTCATCACCGAAGTTGAGTGTGAATTTGAG-GGAT--T--GCGAATA-TTTTGTAGTTGCAT
gi|6 : TACCAGTCATGGTCTTGTT---GCATA---TTTTTTATTTATTTAATTAAGCCC-A-TGAAAGACACAAACATTGATTGACA-GACACAAACACGAGCGTGTGTGCTTTAGCATTGTTTGCTTCACAACAAATATTT-CGCGCGCTCCTCGTAAGTTTTCATTGGT--TTAAATG-GT--TT----T-AGGGG-GCGTGCTCATCATTGA--------------TTGAG-GGAT--TGCG---ATCATTTCATAGTTGCAT
gi|7 : AATCATTGTCTTTTT---GCATATTTTTTTTTATTTATAGAATTAATAAC-A-AAAAAGTCA-----------TGACA-GACAAAAACACCAGCGCTTGCGCGTTAGCACTGTTTGTTTGATACTAGTTATTT-CGCGCGCTTCTTTTATGTTTTCATTGGA--TTAAATG-GA--TT----G-AGGGG-GCGTGTTTATCACTAAAATCGAATGTGAATTTGGGTGAGTG-T--A---CTCATTTTGTAGTTGC
gi|8 : CAGTCATTGCCTTATC---GCGTA---TTTTTCATTTATAGATTTAAGCCC-A-TGAAA----CGA----T--TTGACA-GACA-AAACCCGAGGGTGTGCGCGTTAGCATTGTTTGTTTGATAATAATTATTT-CGTGCGCTTCTCGAAAGTTTTCATTGGA--TTAAATG-GA--TT----A-AGGAG-GCATGTTCATCATTAAAATTGAATGTGAATTTGAG-A--------G---ATCATTTTGTTGTTGCAT
gi|9 : taACCAGTAATGGTCTTGTT---GCAT------TTTT-TTTAT---------------TGATAGACACAGACATTGATTGACA-GACATAAACACGAGCGCGTGATCGTTAGAACTGTTTGTTTCAAAATAAATATTT-TGCGCGCTCCTCGTAAGTTTTCAATGGA--TTAAATG-GA--TT----A-AGGGG-GCGTGTTCATCATTGAAGTTGAGTGTGAATTTGAG-GGAT--T--GCA-ACCATTTTGTAGTTGCAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AGGTTAGAAGTTATATGGTATTTTCTACGCGAGTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCA
Unaligned ( gi|26 ): GTTGGAAGTTATATGATATTTTCTACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|27 ): AAGTTATATGTTATTTTCTACGTAACCTCTAAATGGGTTAAATGTTGATCTACGGTCTCATA
Unaligned ( gi|28 ): AGATAAGAAGTTATATGGTATTTTCTACGCCAGTAGATGTTGTTCTACGTTCTTGTTCCT
Unaligned ( gi|31 ): CAGGTTAGAAGTTATATGGTATTTCCTACGC
Unaligned ( gi|32 ): TAGGTAAGAAGTTATATGGAATTTTCTACGC
Alignments
lowQualScore : 22222222222222
lowQualScore : 1 333 3333 1 1 0 33 1 2 1 1 2 22 2 22 4444 2 2 1 77777777777777 2 2
lowQualScore : . ... .... . . . .. . . . . . .. . .. .... . . . .............. . .
lowQualScore : 1 333 3333 8 8 9 77 9 7 7 0 1 88 0 99 5555 1 2 3 22222222222222 4 4
consensus : TACCAGTCATTGTCTTGTT---GCATA---ATTTTTATTTATAGAATTAAGCCC-A-TGAAAGACACGAACATTGATTGACA-GACACAAACACGAGCGCGTGCGCGTTAGCACTGTTTGTTTCANAATAANTATTT-CGCGCGCTCCTCGTAAGTTTTCATTGGA--TTAAATG-GA--TT----T-AGGGG-GCGTGTTCATCACTGAAGTTGAGTGTGAATTTGAG-GGAT--T--G---A-TCATTT-TGTAGTTGCAT
Reference ( family-685 ) : TACCAGTCATTGTCTTGTT---GCATA---ATTTTTATTTATAGAATTAAGCCC-A-TGAAAGACACGAACATTGATTGACA-GACACAAACACGAGCGCGTGCGCGTTAGCACTGTTTGTTTCANAATAANTATTT-CGCGCGCTCCTCGTAAGTTTTCATTGGA--TTAAATG-GA--TT----T-AGGGG-GCGTGTTCATCACTGAAGTTGAGTGTGAATTTGAG-GGAT--T--G---A-TCATTT-TGTAGTTGCAT
gi|1 : TACCTGTCATTGTCTTATT---GCATA---ATGTTTATTCATAGAATTAAGCCC-A-CTAATGACCCAAACATTGATTGACA-GGCACAAACATGAGCGCGTTCAAGTTAGGACTGTTTGTTTGGTAATATTTATTT-CGCGCGCTCTTCGTAAGTTTTCATTGGA--TTAAAAG-GA--TT----T-AGAGG-GCGTGTTCATTAATGAAATCCATTATGAATTTGAG-CAATAGC--G---A-TCATTT-TGTAGTTGCA
gi|10 : TACCAGTCATGATCTTGTT---GCATA---AGTTTTATTTATAGAATTAAGCCC-A-TGAAAGACACAAACATTGATTGAAA-GACACAAACACGAGCGCGTGTGCGTTAGCACTGTTTGTTTCAAAATAAATATTT-------------ATAAA--------------TAAATA-GA--TT----T-AGGGG-GCGTGTTCATCACTGAAGTTAAGCATGAATTTGAA-GGATTGT--G---A-TAATTT-TGTATTTGCAT
gi|11 : ACCAGTCATCGTCTTATT---ACATA---ATTTGTATTTATAGAATTAAGCCC----------------------TTGATA-GACACAAACAT-------TG---ATTGACA--GTTTGTTTCAAAATAAATACTT-CGCGTGCTCCTCGTGAGTTTTCATTGGA--TTAAATG-AA--TT----A-AGGGG-GCGTGTTTATCATTGAAGATGAATGTGAATTTGAG-GGAT--TGCG---A-T-ATTTGTGTAGTTTCAT
gi|12 : ACCAGTCATGGTATTGAT---GCATA---ATTTTTATTCATAGAATTAAGCCA-A-TGAAACACACAAAAATTGATTGACA-GACACAAACACGAGCGCGTGCGCGTTAGCACTGTTTGCTTCAAAATAAATATTT-CGCGCGCTCTTCGTTAGTTTTCATTGGAAGTTGAGTGTGAATTT----T-AGGGg
gi|13 : TGGAATTAAGCCC-A-TGAAAGACACAAACATTGATTGACA-GACATAAACTCGAGCGCGTGCGCGTTAGCACTGTTTGTTTCAAAATAAATATTT-CGCGCGCTCCTCGTTAGTTTTCATTGGA--TTAAATG-GA--TT----T-A-TGG-GCGTGTTAATCATTGAAGTTGAATGTGAATTGGAG-GGATTGT--G---A-TCAATT-TGTAGTTACATattgcgattattttatagttgcat
gi|14 : TA---TTTTTTATTTATAGAA---------------AGACA--AATATTGATTTACA-GACATAATCACGAGCGTATGTGCGTTAGCACTGTTTGTTTCAAAATAAAAATTT-CGCGCGCTGCTCGTAAA-TTTCATTCGA--TTAAATG-AA--TT----T-AGTGA-GCGCGTTCATCATTGAAGTTTAGTGTGAATTTGAG-GGATTGT--G---A-TCATTT-TGCAGTTACA
gi|15 : TACCAGTCATCGTCTTGTT---GCATA---ATTTTTATTTATAGAATTAAGCCC-A-TGAAAGACA--AACATT
gi|15 : gTTTGTTTCAAAATAATTTTTTTCGCGCGCTCCTCGTAAGTTATCATTGGA--TTAAATG-AA--TA----A-AGTGG-GCGTGTTCATCATTGAAGTTGAGTGTGAATTTGAG-AGAT--TGCG---A-TCATTT-TGTAGTTGCAttgtttcaaaataatttttttcgcgcgctcctcgtaagttatcattggattaaatgaataaagtgggcgtgttcatcattgaagttgagtgtgaatttgagagattgcgatcattttgtagttgca
gi|16 : gtaccagtcatcgtcttgttgcataatttttatttatagaattaagcccatgaaagacaaacatACCAGTCATCGTCTTGTT---GCATA---ATTTATATTTGTAGAATCAAGCCC-A-TGAAAGACGCG
gi|16 : GCGCGTTAGCACTCTTTGTTTCAAAATAAATATTT-TGCGCTCTCCTCGTAAGTTTTCATTGGA--TTGAATG-GA--TT----T-AGGGG-GCGTATTCATCATTGAAATTGAGTGTGAATTTGG-----------G---A-TCATTT-TGTAGTTGCGTcgttagcactctttgtttcaaaataaatattttgcgctctcctcgtaagttttcattggattgaatggatttagggggcgtattcatcattgaaattgagtgtgaatttgggatcattttgtagttgcgt
gi|17 : accagtcatcgtcttgttgcataatttatatttgtagaatcaagcccatgaaagacAAGCAC-A-TGAAAAA---GAACA--AA--AACA-GACATAAACAAGAGCGTGTGTGCGTTAGCACTGTTTG----ATAATGATTATTT-CGCGCGCTTCTCGTACGTTTGTAATGGA--TTAAATG-GC--TT----TAAGGAG-GCGTGTGCATTACTGAAATTGAATGTGAATTTAAGCGAAT--C--G---A-TC--------AGTTGCAT
gi|18 : TACCAGTCATTGTCTTGTT---GCACC---ATTTTTATCTATAGAGCTAAGCCC-A-CGACTGACACAAACACTGACTGACA-GACACAAACATGAACGCGT---------------TTGTTTGATGACAATTATTT-CGCGCGCTCCTCATAAATTTTTATTCAA--TATAATG-G
gi|19 : TACCAGTCATGGTCTTGTT---GCATA---ATTTTTATTTATAGAATTAAGCCC-A-TGGAAGACACAAACATTGATTTACA-GACAggaatgggtg
gi|19 : GCTCCTCATAAGTTTTTATTAGA--TTAAATA-GA--TT----T-ATGAG-GCGTGT-------TGAAGTTGAGTGTGAATTtgctcctcataagtttttattagattaaatagatttatgaggcgtgttgaagttgagtgtgaatt
gi|2 : taccagtcatggtcttgttgcataatttttatttatagaattaagcccatggaagacacaaacattgatttacagacatTACCAGT-ATTGTCTTGTT---GCATA----TTTTTATTTATAGAATAAAGTTC-A-TGAAAGAAACGAACATTGATTGACA-GACACAAACACGAGCGCTTGTGCGTTAGCGCTGTTTGTTTGATAATAATTATGT-CGCGCGCTCCTCGTAAGTTTTCATTGGA--TTAAATG-TA--TT----T-AGGGG-GCGGGTTCATCACTGAAAATAATTGTGAATTTGAGCGAAT--T--G---A-TATTTT-TGTAGTTGCAT
gi|20 : TACCAGTCATTGTCATGTT---GCATT---ATTTCTATTTATAGAACTAAGC
gi|21 : gGAAAGGCGCGG-CACGGAAAGGCACGGCACAAATATGAGCGCGTGCGAGTTACCACTGTTTGTTTGATAATAATTATTT-CGCGCACTCGTCGTAAA-TTTCATTACA--T--AATG-GA--TTAGGAT-GGGGG-Gtgcgctagacgggcccggcgtattaagtataaatacactattacgtcagcatgtacagcagttaatgctatattcgaaataaagatt
gi|23 : cacgTACCAGTCATTGTCTTGTT---ACATA---ATTTTTATTCATTGA-TTAA---------------ATTAACATTGATTGACA-GACACAAACACGAGTGTGTGCGCGTTAGCACTGTTCGTTTggg
gi|24 : TTGTCTTATTATTGCATA---ACTTTTATTTTTATAATTAAGCAC-A-TGAAAGAACCGAACATAGATTGACA-GGCACAAGTACGATCGCGTGC
gi|25 : TACCAGTCATGGTCTTGTT---GCATA---ATTGTAATTTATAGAATTAAGCCC-AGCGAAA---------------TAACA-GACACAAAAACGAGCGCATGCGCa
gi|29 : CATCACTGAAATCGAATGTGAATTTGAG-------C--G---A-TCATTT-TGTAGTTGCAT
gi|3 : CAGTCATTGTGTTGTT---GTATA---ATTTTTATATATATATTTAAGCTC-A-AGAACGAAACGAACATAAATTGACA-GACACAAATACGAGCGCGTGCGCGTTAGCACTGTTTGGT----AATAAGTATTT-CCTGCGCTCCTCGTAAGTTTTCTTTTGA--TTAAATG-GA--TT----T-AGGGATGCGCGTTCATCACTGAAAATGAATGTGAATTTGAG-CG-T--TGGG---A-TCATTT-TGAAGTTGCA
gi|30 : TACCAGTCATTGTCTTGTT---GCATA---ATTTTTATCTAT
gi|4 : TAGCAGTCATTGTCTTGTT---ACATA---ATTAGTATTTATTGAATTAAACCCCA-CGAAAGAAACGAACATTGATAAACA-GACAAAAACATGTGCGCGTGCACGTTAGTATTGTCTGTTTAATAATGATTGGTT-TGCGCAGTCCTCTTAA-TTTTCATTGGA--TTAAACG-GA--TT----T-AGAAG-GATTGATCATCACTGAACATTAATGTGAATTTGAG-CAATG-T--C---A-TCATTT-TAT
gi|5 : TACCAGTCATGGTCTTGTT---TCATA---CTTTCTATTTATAGAATTAAGCCC-A-TGAAAGACACTTATATTGATTGACA-GGCACAAATACG------------TTCGCACTTTTTGTTTTAAAATAAATATTT-TGCGCGCTCTTCGTAAGTTTTCATTTGA--TTAAATG-GA--TT----T-AGGGG-GCATGTTCATCACCGAAGTTGAGTGTGAATTTGAG-GGAT--T--GCGAA-T-ATTT-TGTAGTTGCAT
gi|6 : TACCAGTCATGGTCTTGTT---GCATA---TTTTTTATTTATTTAATTAAGCCC-A-TGAAAGACACAAACATTGATTGACA-GACACAAACACGAGCGTGTGTGCTTTAGCATTGTTTGCTTCACAACAAATATTT-CGCGCGCTCCTCGTAAGTTTTCATTGGT--TTAAATG-GT--TT----T-AGGGG-GCGTGCTCATCATTGA--------------TTGAG-GGAT--TGCG---A-TCATTT-CATAGTTGCAT
gi|7 : AATCATTGTCTTTTT---GCATATTTTTTTTTATTTATAGAATTAATAAC-A-AAAAAGTCA-----------TGACA-GACAAAAACACCAGCGCTTGCGCGTTAGCACTGTTTGTTTGATACTAGTTATTT-CGCGCGCTTCTTTTATGTTTTCATTGGA--TTAAATG-GA--TT----G-AGGGG-GCGTGTTTATCACTAAAATCGAATGTGAATTTGGG-TGAG--T--GT--ACTCATTT-TGTAGTTGC
gi|8 : CAGTCATTGCCTTATC---GCGTA---TTTTTCATTTATAGATTTAAGCCC-A-TGAAA----CGA----T--TTGACA-GACA-AAACCCGAGGGTGTGCGCGTTAGCATTGTTTGTTTGATAATAATTATTT-CGTGCGCTTCTCGAAAGTTTTCATTGGA--TTAAATG-GA--TT----A-AGGAG-GCATGTTCATCATTAAAATTGAATGTGAATTTGAG-A--------G---A-TCATTT-TGTTGTTGCAT
gi|9 : taACCAGTAATGGTCTTGTT---GCAT------TTTT-TTTAT---------------TGATAGACACAGACATTGATTGACA-GACATAAACACGAGCGCGTGATCGTTAGAACTGTTTGTTTCAAAATAAATATTT-TGCGCGCTCCTCGTAAGTTTTCAATGGA--TTAAATG-GA--TT----A-AGGGG-GCGTGTTCATCATTGAAGTTGAGTGTGAATTTGAG-GGAT--T--GCA-A-CCATTT-TGTAGTTGCAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AGGTTAGAAGTTATATGGTATTTTCTACGCGAGTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCA
Unaligned ( gi|26 ): GTTGGAAGTTATATGATATTTTCTACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|27 ): AAGTTATATGTTATTTTCTACGTAACCTCTAAATGGGTTAAATGTTGATCTACGGTCTCATA
Unaligned ( gi|28 ): AGATAAGAAGTTATATGGTATTTTCTACGCCAGTAGATGTTGTTCTACGTTCTTGTTCCT
Unaligned ( gi|31 ): CAGGTTAGAAGTTATATGGTATTTCCTACGC
Unaligned ( gi|32 ): TAGGTAAGAAGTTATATGGAATTTTCTACGC
Alignments
lowQualScore : 22222222222222
lowQualScore : 1 333 3333 1 1 0 33 1 2 1 1 2 22 2 22 4444 2 2 1 77777777777777 2 2
lowQualScore : . ... .... . . . .. . . . . . .. . .. .... . . . .............. . .
lowQualScore : 1 333 3333 8 8 9 77 9 7 7 0 1 88 0 99 5555 1 2 3 22222222222222 4 4
consensus : TACCAGTCATTGTCTTGTT---GCATA---ATTTTTATTTATAGAATTAAGCCC-A-TGAAAGACACGAACATTGATTGACA-GACACAAACACGAGCGCGTGCGCGTTAGCACTGTTTGTTTCANAATAANTATTT-CGCGCGCTCCTCGTAAGTTTTCATTGGA--TTAAATG-GA--TT----T-AGGGG-GCGTGTTCATCACTGAAGTTGAGTGTGAATTTGAG-GGAT--T--G---A-TCATTT-TGTAGTTGCAT
Reference ( family-685 ) : TACCAGTCATTGTCTTGTT---GCATA---ATTTTTATTTATAGAATTAAGCCC-A-TGAAAGACACGAACATTGATTGACA-GACACAAACACGAGCGCGTGCGCGTTAGCACTGTTTGTTTCANAATAANTATTT-CGCGCGCTCCTCGTAAGTTTTCATTGGA--TTAAATG-GA--TT----T-AGGGG-GCGTGTTCATCACTGAAGTTGAGTGTGAATTTGAG-GGAT--T--G---A-TCATTT-TGTAGTTGCAT
gi|1 : TACCTGTCATTGTCTTATT---GCATA---ATGTTTATTCATAGAATTAAGCCC-A-CTAATGACCCAAACATTGATTGACA-GGCACAAACATGAGCGCGTTCAAGTTAGGACTGTTTGTTTGGTAATATTTATTT-CGCGCGCTCTTCGTAAGTTTTCATTGGA--TTAAAAG-GA--TT----T-AGAGG-GCGTGTTCATTAATGAAATCCATTATGAATTTGAG-CAATAGC--G---A-TCATTT-TGTAGTTGCA
gi|10 : TACCAGTCATGATCTTGTT---GCATA---AGTTTTATTTATAGAATTAAGCCC-A-TGAAAGACACAAACATTGATTGAAA-GACACAAACACGAGCGCGTGTGCGTTAGCACTGTTTGTTTCAAAATAAATATTT-------------ATAAA--------------TAAATA-GA--TT----T-AGGGG-GCGTGTTCATCACTGAAGTTAAGCATGAATTTGAA-GGATTGT--G---A-TAATTT-TGTATTTGCAT
gi|11 : ACCAGTCATCGTCTTATT---ACATA---ATTTGTATTTATAGAATTAAGCCC----------------------TTGATA-GACACAAACAT-------TG---ATTGACA--GTTTGTTTCAAAATAAATACTT-CGCGTGCTCCTCGTGAGTTTTCATTGGA--TTAAATG-AA--TT----A-AGGGG-GCGTGTTTATCATTGAAGATGAATGTGAATTTGAG-GGAT--TGCG---A-T-ATTTGTGTAGTTTCAT
gi|12 : ACCAGTCATGGTATTGAT---GCATA---ATTTTTATTCATAGAATTAAGCCA-A-TGAAACACACAAAAATTGATTGACA-GACACAAACACGAGCGCGTGCGCGTTAGCACTGTTTGCTTCAAAATAAATATTT-CGCGCGCTCTTCGTTAGTTTTCATTGGAAGTTGAGTGTGAATTT----T-AGGGg
gi|13 : TGGAATTAAGCCC-A-TGAAAGACACAAACATTGATTGACA-GACATAAACTCGAGCGCGTGCGCGTTAGCACTGTTTGTTTCAAAATAAATATTT-CGCGCGCTCCTCGTTAGTTTTCATTGGA--TTAAATG-GA--TT----T-A-TGG-GCGTGTTAATCATTGAAGTTGAATGTGAATTGGAG-GGATTGT--G---A-TCAATT-TGTAGTTACATattgcgattattttatagttgcat
gi|14 : TA---TTTTTTATTTATAGAA---------------AGACA--AATATTGATTTACA-GACATAATCACGAGCGTATGTGCGTTAGCACTGTTTGTTTCAAAATAAAAATTT-CGCGCGCTGCTCGTAAA-TTTCATTCGA--TTAAATG-AA--TT----T-AGTGA-GCGCGTTCATCATTGAAGTTTAGTGTGAATTTGAG-GGATTGT--G---A-TCATTT-TGCAGTTACA
gi|15 : TACCAGTCATCGTCTTGTT---GCATA---ATTTTTATTTATAGAATTAAGCCC-A-TGAAAGACA--AACATT
gi|15 : gTTTGTTTCAAAATAATTTTTTTCGCGCGCTCCTCGTAAGTTATCATTGGA--TTAAATG-AA--TA----A-AGTGG-GCGTGTTCATCATTGAAGTTGAGTGTGAATTTGAG-AGAT--TGCG---A-TCATTT-TGTAGTTGCAttgtttcaaaataatttttttcgcgcgctcctcgtaagttatcattggattaaatgaataaagtgggcgtgttcatcattgaagttgagtgtgaatttgagagattgcgatcattttgtagttgca
gi|16 : gtaccagtcatcgtcttgttgcataatttttatttatagaattaagcccatgaaagacaaacatACCAGTCATCGTCTTGTT---GCATA---ATTTATATTTGTAGAATCAAGCCC-A-TGAAAGACGCG
gi|16 : GCGCGTTAGCACTCTTTGTTTCAAAATAAATATTT-TGCGCTCTCCTCGTAAGTTTTCATTGGA--TTGAATG-GA--TT----T-AGGGG-GCGTATTCATCATTGAAATTGAGTGTGAATTTGG-----------G---A-TCATTT-TGTAGTTGCGTcgttagcactctttgtttcaaaataaatattttgcgctctcctcgtaagttttcattggattgaatggatttagggggcgtattcatcattgaaattgagtgtgaatttgggatcattttgtagttgcgt
gi|17 : accagtcatcgtcttgttgcataatttatatttgtagaatcaagcccatgaaagacAAGCAC-A-TGAAAAA---GAACA--AA--AACA-GACATAAACAAGAGCGTGTGTGCGTTAGCACTGTTTG----ATAATGATTATTT-CGCGCGCTTCTCGTACGTTTGTAATGGA--TTAAATG-GC--TT----TAAGGAG-GCGTGTGCATTACTGAAATTGAATGTGAATTTAAGCGAAT--C--G---A-TC--------AGTTGCAT
gi|18 : TACCAGTCATTGTCTTGTT---GCACC---ATTTTTATCTATAGAGCTAAGCCC-A-CGACTGACACAAACACTGACTGACA-GACACAAACATGAACGCGT---------------TTGTTTGATGACAATTATTT-CGCGCGCTCCTCATAAATTTTTATTCAA--TATAATG-G
gi|19 : TACCAGTCATGGTCTTGTT---GCATA---ATTTTTATTTATAGAATTAAGCCC-A-TGGAAGACACAAACATTGATTTACA-GACAggaatgggtg
gi|19 : GCTCCTCATAAGTTTTTATTAGA--TTAAATA-GA--TT----T-ATGAG-GCGTGT-------TGAAGTTGAGTGTGAATTtgctcctcataagtttttattagattaaatagatttatgaggcgtgttgaagttgagtgtgaatt
gi|2 : taccagtcatggtcttgttgcataatttttatttatagaattaagcccatggaagacacaaacattgatttacagacatTACCAGT-ATTGTCTTGTT---GCATA----TTTTTATTTATAGAATAAAGTTC-A-TGAAAGAAACGAACATTGATTGACA-GACACAAACACGAGCGCTTGTGCGTTAGCGCTGTTTGTTTGATAATAATTATGT-CGCGCGCTCCTCGTAAGTTTTCATTGGA--TTAAATG-TA--TT----T-AGGGG-GCGGGTTCATCACTGAAAATAATTGTGAATTTGAGCGAAT--T--G---A-TATTTT-TGTAGTTGCAT
gi|20 : TACCAGTCATTGTCATGTT---GCATT---ATTTCTATTTATAGAACTAAGC
gi|21 : gGAAAGGCGCGG-CACGGAAAGGCACGGCACAAATATGAGCGCGTGCGAGTTACCACTGTTTGTTTGATAATAATTATTT-CGCGCACTCGTCGTAAA-TTTCATTACA--T--AATG-GA--TTAGGAT-GGGGG-Gtgcgctagacgggcccggcgtattaagtataaatacactattacgtcagcatgtacagcagttaatgctatattcgaaataaagatt
gi|23 : cacgTACCAGTCATTGTCTTGTT---ACATA---ATTTTTATTCATTGA-TTAA---------------ATTAACATTGATTGACA-GACACAAACACGAGTGTGTGCGCGTTAGCACTGTTCGTTTggg
gi|24 : TTGTCTTATTATTGCATA---ACTTTTATTTTTATAATTAAGCAC-A-TGAAAGAACCGAACATAGATTGACA-GGCACAAGTACGATCGCGTGC
gi|25 : TACCAGTCATGGTCTTGTT---GCATA---ATTGTAATTTATAGAATTAAGCCC-AGCGAAA---------------TAACA-GACACAAAAACGAGCGCATGCGCa
gi|29 : CATCACTGAAATCGAATGTGAATTTGAG-------C--G---A-TCATTT-TGTAGTTGCAT
gi|3 : CAGTCATTGTGTTGTT---GTATA---ATTTTTATATATATATTTAAGCTC-A-AGAACGAAACGAACATAAATTGACA-GACACAAATACGAGCGCGTGCGCGTTAGCACTGTTTGGT----AATAAGTATTT-CCTGCGCTCCTCGTAAGTTTTCTTTTGA--TTAAATG-GA--TT----T-AGGGATGCGCGTTCATCACTGAAAATGAATGTGAATTTGAG-CG-T--TGGG---A-TCATTT-TGAAGTTGCA
gi|30 : TACCAGTCATTGTCTTGTT---GCATA---ATTTTTATCTAT
gi|4 : TAGCAGTCATTGTCTTGTT---ACATA---ATTAGTATTTATTGAATTAAACCCCA-CGAAAGAAACGAACATTGATAAACA-GACAAAAACATGTGCGCGTGCACGTTAGTATTGTCTGTTTAATAATGATTGGTT-TGCGCAGTCCTCTTAA-TTTTCATTGGA--TTAAACG-GA--TT----T-AGAAG-GATTGATCATCACTGAACATTAATGTGAATTTGAG-CAATG-T--C---A-TCATTT-TAT
gi|5 : TACCAGTCATGGTCTTGTT---TCATA---CTTTCTATTTATAGAATTAAGCCC-A-TGAAAGACACTTATATTGATTGACA-GGCACAAATACG------------TTCGCACTTTTTGTTTTAAAATAAATATTT-TGCGCGCTCTTCGTAAGTTTTCATTTGA--TTAAATG-GA--TT----T-AGGGG-GCATGTTCATCACCGAAGTTGAGTGTGAATTTGAG-GGAT--T--GCGAA-T-ATTT-TGTAGTTGCAT
gi|6 : TACCAGTCATGGTCTTGTT---GCATA---TTTTTTATTTATTTAATTAAGCCC-A-TGAAAGACACAAACATTGATTGACA-GACACAAACACGAGCGTGTGTGCTTTAGCATTGTTTGCTTCACAACAAATATTT-CGCGCGCTCCTCGTAAGTTTTCATTGGT--TTAAATG-GT--TT----T-AGGGG-GCGTGCTCATCATTGA--------------TTGAG-GGAT--TGCG---A-TCATTT-CATAGTTGCAT
gi|7 : AATCATTGTCTTTTT---GCATATTTTTTTTTATTTATAGAATTAATAAC-A-AAAAAGTCA-----------TGACA-GACAAAAACACCAGCGCTTGCGCGTTAGCACTGTTTGTTTGATACTAGTTATTT-CGCGCGCTTCTTTTATGTTTTCATTGGA--TTAAATG-GA--TT----G-AGGGG-GCGTGTTTATCACTAAAATCGAATGTGAATTTGGG-TGAG--T--GT--ACTCATTT-TGTAGTTGC
gi|8 : CAGTCATTGCCTTATC---GCGTA---TTTTTCATTTATAGATTTAAGCCC-A-TGAAA----CGA----T--TTGACA-GACA-AAACCCGAGGGTGTGCGCGTTAGCATTGTTTGTTTGATAATAATTATTT-CGTGCGCTTCTCGAAAGTTTTCATTGGA--TTAAATG-GA--TT----A-AGGAG-GCATGTTCATCATTAAAATTGAATGTGAATTTGAG-A--------G---A-TCATTT-TGTTGTTGCAT
gi|9 : taACCAGTAATGGTCTTGTT---GCAT------TTTT-TTTAT---------------TGATAGACACAGACATTGATTGACA-GACATAAACACGAGCGCGTGATCGTTAGAACTGTTTGTTTCAAAATAAATATTT-TGCGCGCTCCTCGTAAGTTTTCAATGGA--TTAAATG-GA--TT----A-AGGGG-GCGTGTTCATCATTGAAGTTGAGTGTGAATTTGAG-GGAT--T--GCA-A-CCATTT-TGTAGTTGCAT
blockSeqs : G ATT TTTT C G CA C C A A T AG T AT AGGA A T G GGATTGCGA C G
blockSeqs : C . A . . CA . C A A . . . . . . . A GGATTGTG . .
blockSeqs : G . A . . CA . C A A . . . . . . . A GGATTGCG . .
blockSeqs : C . A . . CG . C A A . . . . . . . G GGATTGTG . .
blockSeqs : C . T . . CA . C A A . . . . . . . G GGATTGTG . .
blockSeqs : T . A . . CA . C A T . . . . . . . G AGATTGCG . .
blockSeqs : G . A . . CG . C A A . . . . . . . A GGATTGCG . .
blockSeqs : T . A . . CG . G T T . . . . . . . G GGATTGCA . .
blockSeqs : T . A . . TT . G T T . . . . . . . T CGAATCG . .
blockSeqs : T . A . . CG . G T T . . . . . . . A CGAATTG . .
blockSeqs : T . A . . CG . A T T . . . . . . . A CGTTGGG . .
blockSeqs : G . A . . CG . T T G . . . . . . . A CAATGTC . .
blockSeqs : T . A . . CT . C A T . . . . . . . G TGAGTGT . .
blockSeqs : T . A . . CA . G C A . . . . . . . A CG . .
blockSeqs : T . A . . CG . G T A . . . . . . . A AG . .
blockSeqs : G . A . . CA . C T T . . . . . . . G G . .
blockSeqs : G . C . . G . . A T . . . . . . . .
blockSeqs : T . T . . . . . . A . . . . . .
blockSeqs : T . T . . . . . .
blockSeqs : G . . . . . .
blockSeqs : . . . .
blockSeqs : .
blockSeqCons :
originalCons : TACCAGTCATTGTCTTGTT---GCATA---ATTTTTATTTATAGAATTAAGCCC-A-TGAAAGACACGAACATTGATTGACA-GACACAAACACGAGCGCGTGCGCGTTAGCACTGTTTGTTTCANAATAANTATTT-CGCGCGCTCCTCGTAAGTTTTCATTGGA--TTAAATG-GA--TT----T-AGGGG-GCGTGTTCATCACTGAAGTTGAGTGTGAATTTGAG-GGAT--T--G---A-TCATTT-TGTAGTTGCAT
finalCons : TACCAGTCATTGTCTTGTT---GCATA---ATTTTTATTTATAGAATTAAGCCC-A-TGAAAGACACGAACATTGATTGACA-GACACAAACACGAGCGCGTGCGCGTTAGCACTGTTTGTTTCANAATAANTATTT-CGCGCGCTCCTCGTAAGTTTTCATTGGA--TTAAATG-GA--TT----T-AGGGG-GCGTGTTCATCACTGAAGTTGAGTGTGAATTTGAG-GGAT--T--G---A-TCATTT-TGTAGTTGCAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AGGTTAGAAGTTATATGGTATTTTCTACGCGAGTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCA
Unaligned ( gi|26 ): GTTGGAAGTTATATGATATTTTCTACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|27 ): AAGTTATATGTTATTTTCTACGTAACCTCTAAATGGGTTAAATGTTGATCTACGGTCTCATA
Unaligned ( gi|28 ): AGATAAGAAGTTATATGGTATTTTCTACGCCAGTAGATGTTGTTCTACGTTCTTGTTCCT
Unaligned ( gi|31 ): CAGGTTAGAAGTTATATGGTATTTCCTACGC
Unaligned ( gi|32 ): TAGGTAAGAAGTTATATGGAATTTTCTACGC
Alignments
lowQualScore : 22222222222222
lowQualScore : 1 333 3333 1 1 0 33 1 2 1 1 2 22 2 22 4444 2 2 1 77777777777777 2 2
lowQualScore : . ... .... . . . .. . . . . . .. . .. .... . . . .............. . .
lowQualScore : 1 333 3333 8 8 9 77 9 7 7 0 1 88 0 99 5555 1 2 3 22222222222222 4 4
consensus : TACCAGTCATTGTCTTGTT---GCATA---ATTTTTATTTATAGAATTAAGCCC-A-TGAAAGACACGAACATTGATTGACA-GACACAAACACGAGCGCGTGCGCGTTAGCACTGTTTGTTTCANAATAANTATTT-CGCGCGCTCCTCGTAAGTTTTCATTGGA--TTAAATG-GA--TT----T-AGGGG-GCGTGTTCATCACTGAAGTTGAGTGTGAATTTGAG-GGAT--T--G---A-TCATTT-TGTAGTTGCAT
Reference ( family-685 ) : TACCAGTCATTGTCTTGTT---GCATA---ATTTTTATTTATAGAATTAAGCCC-A-TGAAAGACACGAACATTGATTGACA-GACACAAACACGAGCGCGTGCGCGTTAGCACTGTTTGTTTCANAATAANTATTT-CGCGCGCTCCTCGTAAGTTTTCATTGGA--TTAAATG-GA--TT----T-AGGGG-GCGTGTTCATCACTGAAGTTGAGTGTGAATTTGAG-GGAT--T--G---A-TCATTT-TGTAGTTGCAT
gi|1 : TACCTGTCATTGTCTTATT---GCATA---ATGTTTATTCATAGAATTAAGCCC-A-CTAATGACCCAAACATTGATTGACA-GGCACAAACATGAGCGCGTTCAAGTTAGGACTGTTTGTTTGGTAATATTTATTT-CGCGCGCTCTTCGTAAGTTTTCATTGGA--TTAAAAG-GA--TT----T-AGAGG-GCGTGTTCATTAATGAAATCCATTATGAATTTGAG-CAATAGC--G---A-TCATTT-TGTAGTTGCA
gi|10 : TACCAGTCATGATCTTGTT---GCATA---AGTTTTATTTATAGAATTAAGCCC-A-TGAAAGACACAAACATTGATTGAAA-GACACAAACACGAGCGCGTGTGCGTTAGCACTGTTTGTTTCAAAATAAATATTT-------------ATAAA--------------TAAATA-GA--TT----T-AGGGG-GCGTGTTCATCACTGAAGTTAAGCATGAATTTGAA-GGATTGT--G---A-TAATTT-TGTATTTGCAT
gi|11 : ACCAGTCATCGTCTTATT---ACATA---ATTTGTATTTATAGAATTAAGCCC----------------------TTGATA-GACACAAACAT-------TG---ATTGACA--GTTTGTTTCAAAATAAATACTT-CGCGTGCTCCTCGTGAGTTTTCATTGGA--TTAAATG-AA--TT----A-AGGGG-GCGTGTTTATCATTGAAGATGAATGTGAATTTGAG-GGAT--TGCG---A-T-ATTTGTGTAGTTTCAT
gi|12 : ACCAGTCATGGTATTGAT---GCATA---ATTTTTATTCATAGAATTAAGCCA-A-TGAAACACACAAAAATTGATTGACA-GACACAAACACGAGCGCGTGCGCGTTAGCACTGTTTGCTTCAAAATAAATATTT-CGCGCGCTCTTCGTTAGTTTTCATTGGAAGTTGAGTGTGAATTT----T-AGGGg
gi|13 : TGGAATTAAGCCC-A-TGAAAGACACAAACATTGATTGACA-GACATAAACTCGAGCGCGTGCGCGTTAGCACTGTTTGTTTCAAAATAAATATTT-CGCGCGCTCCTCGTTAGTTTTCATTGGA--TTAAATG-GA--TT----T-A-TGG-GCGTGTTAATCATTGAAGTTGAATGTGAATTGGAG-GGATTGT--G---A-TCAATT-TGTAGTTACATattgcgattattttatagttgcat
gi|14 : TA---TTTTTTATTTATAGAA---------------AGACA--AATATTGATTTACA-GACATAATCACGAGCGTATGTGCGTTAGCACTGTTTGTTTCAAAATAAAAATTT-CGCGCGCTGCTCGTAAA-TTTCATTCGA--TTAAATG-AA--TT----T-AGTGA-GCGCGTTCATCATTGAAGTTTAGTGTGAATTTGAG-GGATTGT--G---A-TCATTT-TGCAGTTACA
gi|15 : TACCAGTCATCGTCTTGTT---GCATA---ATTTTTATTTATAGAATTAAGCCC-A-TGAAAGACA--AACATT
gi|15 : gTTTGTTTCAAAATAATTTTTTTCGCGCGCTCCTCGTAAGTTATCATTGGA--TTAAATG-AA--TA----A-AGTGG-GCGTGTTCATCATTGAAGTTGAGTGTGAATTTGAG-AGAT--TGCG---A-TCATTT-TGTAGTTGCAttgtttcaaaataatttttttcgcgcgctcctcgtaagttatcattggattaaatgaataaagtgggcgtgttcatcattgaagttgagtgtgaatttgagagattgcgatcattttgtagttgca
gi|16 : gtaccagtcatcgtcttgttgcataatttttatttatagaattaagcccatgaaagacaaacatACCAGTCATCGTCTTGTT---GCATA---ATTTATATTTGTAGAATCAAGCCC-A-TGAAAGACGCG
gi|16 : GCGCGTTAGCACTCTTTGTTTCAAAATAAATATTT-TGCGCTCTCCTCGTAAGTTTTCATTGGA--TTGAATG-GA--TT----T-AGGGG-GCGTATTCATCATTGAAATTGAGTGTGAATTTGG-----------G---A-TCATTT-TGTAGTTGCGTcgttagcactctttgtttcaaaataaatattttgcgctctcctcgtaagttttcattggattgaatggatttagggggcgtattcatcattgaaattgagtgtgaatttgggatcattttgtagttgcgt
gi|17 : accagtcatcgtcttgttgcataatttatatttgtagaatcaagcccatgaaagacAAGCAC-A-TGAAAAA---GAACA--AA--AACA-GACATAAACAAGAGCGTGTGTGCGTTAGCACTGTTTG----ATAATGATTATTT-CGCGCGCTTCTCGTACGTTTGTAATGGA--TTAAATG-GC--TT----TAAGGAG-GCGTGTGCATTACTGAAATTGAATGTGAATTTAAGCGAAT--C--G---A-TC--------AGTTGCAT
gi|18 : TACCAGTCATTGTCTTGTT---GCACC---ATTTTTATCTATAGAGCTAAGCCC-A-CGACTGACACAAACACTGACTGACA-GACACAAACATGAACGCGT---------------TTGTTTGATGACAATTATTT-CGCGCGCTCCTCATAAATTTTTATTCAA--TATAATG-G
gi|19 : TACCAGTCATGGTCTTGTT---GCATA---ATTTTTATTTATAGAATTAAGCCC-A-TGGAAGACACAAACATTGATTTACA-GACAggaatgggtg
gi|19 : GCTCCTCATAAGTTTTTATTAGA--TTAAATA-GA--TT----T-ATGAG-GCGTGT-------TGAAGTTGAGTGTGAATTtgctcctcataagtttttattagattaaatagatttatgaggcgtgttgaagttgagtgtgaatt
gi|2 : taccagtcatggtcttgttgcataatttttatttatagaattaagcccatggaagacacaaacattgatttacagacatTACCAGT-ATTGTCTTGTT---GCATA----TTTTTATTTATAGAATAAAGTTC-A-TGAAAGAAACGAACATTGATTGACA-GACACAAACACGAGCGCTTGTGCGTTAGCGCTGTTTGTTTGATAATAATTATGT-CGCGCGCTCCTCGTAAGTTTTCATTGGA--TTAAATG-TA--TT----T-AGGGG-GCGGGTTCATCACTGAAAATAATTGTGAATTTGAGCGAAT--T--G---A-TATTTT-TGTAGTTGCAT
gi|20 : TACCAGTCATTGTCATGTT---GCATT---ATTTCTATTTATAGAACTAAGC
gi|21 : gGAAAGGCGCGG-CACGGAAAGGCACGGCACAAATATGAGCGCGTGCGAGTTACCACTGTTTGTTTGATAATAATTATTT-CGCGCACTCGTCGTAAA-TTTCATTACA--T--AATG-GA--TTAGGAT-GGGGG-Gtgcgctagacgggcccggcgtattaagtataaatacactattacgtcagcatgtacagcagttaatgctatattcgaaataaagatt
gi|23 : cacgTACCAGTCATTGTCTTGTT---ACATA---ATTTTTATTCATTGA-TTAA---------------ATTAACATTGATTGACA-GACACAAACACGAGTGTGTGCGCGTTAGCACTGTTCGTTTggg
gi|24 : TTGTCTTATTATTGCATA---ACTTTTATTTTTATAATTAAGCAC-A-TGAAAGAACCGAACATAGATTGACA-GGCACAAGTACGATCGCGTGC
gi|25 : TACCAGTCATGGTCTTGTT---GCATA---ATTGTAATTTATAGAATTAAGCCC-AGCGAAA---------------TAACA-GACACAAAAACGAGCGCATGCGCa
gi|29 : CATCACTGAAATCGAATGTGAATTTGAG-------C--G---A-TCATTT-TGTAGTTGCAT
gi|3 : CAGTCATTGTGTTGTT---GTATA---ATTTTTATATATATATTTAAGCTC-A-AGAACGAAACGAACATAAATTGACA-GACACAAATACGAGCGCGTGCGCGTTAGCACTGTTTGGT----AATAAGTATTT-CCTGCGCTCCTCGTAAGTTTTCTTTTGA--TTAAATG-GA--TT----T-AGGGATGCGCGTTCATCACTGAAAATGAATGTGAATTTGAG-CG-T--TGGG---A-TCATTT-TGAAGTTGCA
gi|30 : TACCAGTCATTGTCTTGTT---GCATA---ATTTTTATCTAT
gi|4 : TAGCAGTCATTGTCTTGTT---ACATA---ATTAGTATTTATTGAATTAAACCCCA-CGAAAGAAACGAACATTGATAAACA-GACAAAAACATGTGCGCGTGCACGTTAGTATTGTCTGTTTAATAATGATTGGTT-TGCGCAGTCCTCTTAA-TTTTCATTGGA--TTAAACG-GA--TT----T-AGAAG-GATTGATCATCACTGAACATTAATGTGAATTTGAG-CAATG-T--C---A-TCATTT-TAT
gi|5 : TACCAGTCATGGTCTTGTT---TCATA---CTTTCTATTTATAGAATTAAGCCC-A-TGAAAGACACTTATATTGATTGACA-GGCACAAATACG------------TTCGCACTTTTTGTTTTAAAATAAATATTT-TGCGCGCTCTTCGTAAGTTTTCATTTGA--TTAAATG-GA--TT----T-AGGGG-GCATGTTCATCACCGAAGTTGAGTGTGAATTTGAG-GGAT--T--GCGAA-T-ATTT-TGTAGTTGCAT
gi|6 : TACCAGTCATGGTCTTGTT---GCATA---TTTTTTATTTATTTAATTAAGCCC-A-TGAAAGACACAAACATTGATTGACA-GACACAAACACGAGCGTGTGTGCTTTAGCATTGTTTGCTTCACAACAAATATTT-CGCGCGCTCCTCGTAAGTTTTCATTGGT--TTAAATG-GT--TT----T-AGGGG-GCGTGCTCATCATTGA--------------TTGAG-GGAT--TGCG---A-TCATTT-CATAGTTGCAT
gi|7 : AATCATTGTCTTTTT---GCATATTTTTTTTTATTTATAGAATTAATAAC-A-AAAAAGTCA-----------TGACA-GACAAAAACACCAGCGCTTGCGCGTTAGCACTGTTTGTTTGATACTAGTTATTT-CGCGCGCTTCTTTTATGTTTTCATTGGA--TTAAATG-GA--TT----G-AGGGG-GCGTGTTTATCACTAAAATCGAATGTGAATTTGGG-TGAG--T--GT--ACTCATTT-TGTAGTTGC
gi|8 : CAGTCATTGCCTTATC---GCGTA---TTTTTCATTTATAGATTTAAGCCC-A-TGAAA----CGA----T--TTGACA-GACA-AAACCCGAGGGTGTGCGCGTTAGCATTGTTTGTTTGATAATAATTATTT-CGTGCGCTTCTCGAAAGTTTTCATTGGA--TTAAATG-GA--TT----A-AGGAG-GCATGTTCATCATTAAAATTGAATGTGAATTTGAG-A--------G---A-TCATTT-TGTTGTTGCAT
gi|9 : taACCAGTAATGGTCTTGTT---GCAT------TTTT-TTTAT---------------TGATAGACACAGACATTGATTGACA-GACATAAACACGAGCGCGTGATCGTTAGAACTGTTTGTTTCAAAATAAATATTT-TGCGCGCTCCTCGTAAGTTTTCAATGGA--TTAAATG-GA--TT----A-AGGGG-GCGTGTTCATCATTGAAGTTGAGTGTGAATTTGAG-GGAT--T--GCA-A-CCATTT-TGTAGTTGCAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): AGGTTAGAAGTTATATGGTATTTTCTACGCGAGTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCA
Unaligned ( gi|26 ): GTTGGAAGTTATATGATATTTTCTACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Unaligned ( gi|27 ): AAGTTATATGTTATTTTCTACGTAACCTCTAAATGGGTTAAATGTTGATCTACGGTCTCATA
Unaligned ( gi|28 ): AGATAAGAAGTTATATGGTATTTTCTACGCCAGTAGATGTTGTTCTACGTTCTTGTTCCT
Unaligned ( gi|31 ): CAGGTTAGAAGTTATATGGTATTTCCTACGC
Unaligned ( gi|32 ): TAGGTAAGAAGTTATATGGAATTTTCTACGC