lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222 1111111111111111111111111111111111111111 1111111111
lowQualScore : 1 1 111 1111111111 11 55555555555 22222 22 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1 2 11 3333333333 1 1 222222222222222222222222222222222222 1 1 1 5555555555555555555 22222 11 5555555555555555555555555555555555555555 1 111 111 2222222222 1
lowQualScore : 4 2 5 1 6 444 6 4444444444 0 7 44 6 33 8 6 88 66666666666 8 44444 5 11 4 22 0 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 6 88 2222222222 3 1 6 11 7 0 5 66 3 4 3 1 555555555555555555555555555555555555 7 5 2 4 7 0 7 7777777777777777777 2 2 1 22222 5 22 8 1111111111111111111111111111111111111111 8888 0 2 777 000 99 9 1 7777777777 5
lowQualScore : . . . . . ... . .......... . . .. . .. . . .. ........... . ..... . .. . .. . ....................................................................................................................................... . . .. .......... . . . .. . . . .. . . . . .................................... . . . . . . . ................... . . . ..... . .. . ........................................ .... . . ... ... .. . . .......... .
lowQualScore : 0 2 0 0 7 222 0 8888888888 8 2 55 5 22 8 4 88 88888888888 0 88888 2 88 0 00 8 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 7 00 0000000000 7 0 3 77 0 7 0 55 0 0 7 0 000000000000000000000000000000000000 8 0 2 0 0 2 0 6666666666666666666 2 0 4 00000 0 00 2 8888888888888888888888888888888888888888 2222 5 5 555 555 00 0 0 0000000000 0
consensus : NTAACCTGCATNCAGCAGCCAGTCTACGTATCTTGACTGTGACT-CCTGCTGCAATTGGCGTCCATTTCCGTTGGG-CATANAATAATATTTNATGCACGTAATAATCTTTTAACACGT-TTTTTT-TAAAAA--GT-TTT----AATGTTTGTCTTATTTTTAAA--AATA--------CTTTAA--TAAA--------------------A----------------A-GAATGTCAA--TATT-------------T-----AG-GCT------GTA---TGATTTA-----TAT---------TGGTTACAATCAGGCTTTCAAGATAGAG---GTTAGCGCAGCCTTGCGAAAACACTTTCCACGCATAAATAAACATCGAAGCCTGAACAAGCATTATGGCACCATNNAGATATGTAAACAATGTNAAATNCTGATGCAGGAAATANCTGCCAGAATGGGAC------TGAG------CGCG--T-TCTTC-------TTCTTGTTGATAATCANTCGGAATTCCTCTNTAATGTTCGCAGATTTGCATTGCATTTGGGGCTGCGCNTTACAT----CNA---ATGTAAGATTGACACG-GAGCTGGAAACCAGCATTCCATT-AC-------------AAA------CAA--AATGGTTGTCAAATGCAGGAGTGNTNACTT---TTTC-CAAACCGGAAGTAAAGCGAACAAGTCAT----TGGAGTTT
Reference ( gi|2 ) : GTAACCTGCATACAGTATCCAGTCTAAGTATCTTGACTGTGACT-CATACTGCAGTTGGCGTCCATTTCCGTTGGG-CATAAAATAATATTTCATGCACGTATTACTCTTTTAGCACGT-TTTTTTCTCAA----GT-TTC----AATGTTTGTTTTATTTTTAAA--AATA--------CTTT----TGAA--------------------A----------------A-GAATGTCAA--TATT-------------T-----AG-GCT------GTA---T-ATTTA-----TAT---------TGGTTACCATC-GGCGCTCAATAAAGAG---GTTAGCGCAGCCTTGCGAAAACATTTACCACACATAAATAAAAACTGAAGCCTGAACAAGCATTATGGGACCATACAAATATGTAAACAATGTTAAATTCTGATGCAGGAAATACCTGCTAGAATGGGAC------TGAG------CG------------------TTCTTGTTGATAATCAATCGGAAGTCTTCTATAAAGTTCGCAGATTTGCATAGCATTTGGGGCTGCGTATTATAC----CAA---ATGTAAAACTGACACG-GGATTGGCAACCAATATTTCATTAAC-------------AAA------CAA--ATTGGAAGTCAAATGCAGGAGTGGTCACTT---TTTC-TGAACCGGAAGTAGAGTAAACA---CATCCGGTGGCGTTT
gi|3 : TAACCTGCATTCAGTAGCCAGTCAACATATCTTGAATGTGACT-CCTGCTGCAATTTGCATCCATTTCCATTCAG-CATACAATTGTATTTGATGCACATATTAATCTTTTAGTA-GT-TTGTA---AAA----GT-TTT----AATGTTTGTCTTATTTTTAAA--AA-A--------TTCT----TAAATAAAAAAATGTTGTTTATTTA----------------A-CAATGTCAA--TAAT-------------T------G-GCT------GAA---A-ATTCAGCCCATATGATTTTCTTTGGTTACAATCAGGCTTTCAA-GAAGGGTTAGTTAGCACAGCCTTGTGAAAACACTTCCCATGCATACATTAACATTAACGCCTGAACAAGCATTCTGACACCATACAGATATGTAAACAATGTTAAATACTGATGCAGGAAAAATCTGCTAGAATGGGACAGAACATGAGTTTCTTCAC-----------------TTCTTGTTGATAATCAGTTGGAGTTCCTCTATAATGTTTGCAGATTTGCATTGCATTTGGGACAGCGTATTGTA
gi|4 : cTAACCTGCATACAGCAGCCAGTCTATGTACCTTGACTGTGACT-CCTGCTGCAATTGGCGTCCATGTCCGTTGGGACACATTATGATATTTGATGCACGTAGTAATCTTTTAGCACG---TTTTTAAAAA----GT-TTT----AATGTTCGTCTTATTTTTAAAAGAATA--------CTTT----AACA--------------------A----------------A-AAATGT-AATTTATT-------------T-----AA-GA---------A---T-ATCAA-----TAT---------T
gi|14 : aagcaaaatagaggtggttctatatagggttgtaagaaattggcatttatcagcttaatttatgtgcattgtttatattaaatcatattctgttgttgtttggtgtttagaatcgctttcaacaacagtattctaagcactgccacactggagtatcaagcctcagacTAACTTTAATACAACAGCCAGTCTATTTAGCTTGACTGCAATTCCAAACTGCAtgg
gi|12 : acatAACCTGCATTCAGCAGCAAGTCTACGTATCTCTACAGTGAGT-TCTGCTGCGATTGGCGTa
gi|1 : CCAGTCTGAGCATCTTGACTGTGGCT-CCGGCTGCAACTGGCGTCCATTTTTGCTGGA-CATAAAATAATATTTCATGCACGCAATAATATTCTAACACGT-TTTGTTTTTAAAAAAGT-CTTTAAAAATACTTAAATAA-----AAA--AATATAGTTTATCTTTGTATTGAA--------------------A----------------A-GAATGTCAA--TATTAACGCCGGAAATTC-----AG-CCC------GTA---TGATTTC-----CAT---------TGGTTACAATC-GGTTTTCAAGATAAAG---GTAAGCGCATCCTTGCAAAAACATTTTCCACATATAAATAAAAACTGAAACCTGAACAAGAATTATAGCACCATTAAAATATGTAAACAATGTGAAATTCTGATGCAAAAAATAACTGCCAGAATGGGAC------TGAG------CGTGAGTGTCTTCAAGTCTCTTTTTGTTGATAATCTTTCGGAATTCTTCTTTAATGTTCGCAGATTTGCATTGAATTTTGGGCTGCGCCCGACAT----TCA---CGGTAAGTTTGACTCG-GGGCCGACAAGCAGCATTACATTAACTTCGTAACAAAATAAA------CAA--AATGGCAGTCAAATGC---AGTGATAATTT---TTTTGCGAACCGTAAGTGAAGCA
gi|8 : taACTGTGACT-CTTGCTGCAAAGAGCGGCCATT--------------GAA-AACATTGTATACATGTAA-ACTCTTTTAATTTATATGTTTTGTAAA----GTCTTA----AAAGTTATTTTTCTTTTCAAA--GATA--------CTTTAA--TAAA--------------------A----------------ATGAATGGAAG--TATT-------------T--------TCT------ATAAAGT-ATTTA-----TAT---------Tgtcgtggagtttgtgtcagggctagcattagatccattatattgtgtgggttatacatgcatttattgttacgttgacggacattatcctgatatacgtgtata
gi|6 : TTTTAACATGT-TTTT-----AAAAT-GT-TTT----CATGTTTGTCTTATATTAAAAGAAATA--------CTTAAA--TAAA--------------------ATCATGTAGTTTATATAA-GAATTTCAA--TATT-------------TTGTCCAGAGTTCAACCGGTA---TGATTTT-----AAT---------TGTTTACAATCAGGCATTCAAGATTGAG---GTTAACGCAGACTTACTAAAACACTTTCCATGCATAAATAAACATCGAAGTCTGAACAAGCATTATGtaaaagaatgacaatacttaggcgggacattcagctcat
gi|5 : ATACCTGCCAAAATGGGAC------TAAA------CAAGTTTTTTTTCTC-----TTCTTGTTGATAATCAATCTGAACTCCTCTATATTGTTCTCAGATTTGCATTGCATTTGAGCCTGCATTTTATACCCAGCAATTCATGTAAGACTGAATCG-AAGATGGAAACCAGCATTCC--------------------AA------CAA--AATGGTTGTCAAATGCAGAAGTGTTCACAT---TCTC-TAAACTGGAAGTAAAGTGAACAAGTCAT----TGGAGTTTac
gi|11 : TGTTGATAATCATTTGGAATTCCTATTTAATATACAAAGATTTGCATTGCAGTTAGGGTTgcctctatccatgttccaaatatcattggatttacttcagtatatttagttatgttccagaaagaaattctgatagatgcatac
gi|9 : CATTACATTTGGTGCTGCG----ACAT----TCA---ATGTAAGATTGACACA-GAGCTGGAAACAAGCATTCC-T--AC-------------A-----------------------AAATGCAGGTGTGTTAACTT---TTTC-CAAACAGGAAtgggaggtatt
gi|7 : ATTTGATGCTCTGCATT--------CAA----TGTAAAATTGACACGCAGA-TGACAACCTGCATTCCATT--T-------------AAAGCGGTGCAATGATT----GTCAAATGCAATCGTGATCATTTTTCTTTC-TAAA--GGACGTACAGTGAAC
gi|15 : tgatgtcaatcaacatttctccgtgaattcctcagagaattaccttaaggctcggttcaACG-GAGCTAGAAACCAGCATTCCA--------------------A------CAA--AATGGTTGTCAAATGCACGAGTGcagtattggagct
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): GAAGTTTTAATACTTTAATAAAAATGAATAGAAGTCTGAAGTTGTTTTTAATTGAAAAGAATGTTGATATAAAGGCAGAAACTCAGCCTGTA
Unaligned ( gi|13 ): TTTTAAAAAAAAATACTTTAATAAAAAATGTATTTTTTTTAAGAATGTCAATATTTGG
Unaligned ( gi|16 ): GATGGAAACCAACATTCCATTTTAAAATGCAGATGTGTTTTTTTCCGAATAGGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111
lowQualScore : 11111111 1111 11 22222222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22222 1 111 1111111111111111111111 222222222222 2222222 777777777777777777777777777 111 22222
lowQualScore : 1 3 5 0 8 1 0 1 55 0 3 33333333 6 4444 6 1 2 88 6 44444444 99 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 00000 88 5 3 9 777 0 1 2 2 22 0 1 1 1 1111111111111111111111 1 1 6 1 1 999999999999 99 1 6666666 1 1 777777777777777777777777777 1 22 1 33 1 7 111 6 66 0 88 66 2 44444
lowQualScore : . . . . . . . . .. . . ........ . .... . . . .. . ........ .. .............................................................................................. ..... .. . . . ... . . . . .. . . . . ...................... . . . . . ............ .. . ....... . . ........................... . .. . .. . . ... . .. . .. .. . .....
lowQualScore : 0 7 7 8 0 0 8 0 22 6 7 77777777 7 2222 7 8 2 33 7 22222222 22 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222 44 5 5 8 555 2 2 5 0 00 7 0 0 0 2222222222222222222222 0 0 7 0 0 333333333333 77 0 0000000 0 3 444444444444444444444444444 6 11 4 66 0 5 777 7 22 8 55 22 5 55555
consensus : NTAACCTGCATACAGCAGCCAGTCTACGTATCTTGACTGTGACTCC-TGCTGCAATTGGCGTCCATTTCCGTTGGG-CATANAATAATATTTNATGCACGTANTAATCTTTTAGCACGTTTT--TTT-TAAAAA-GTTTT----AAT-GTTTGTCTTATTTTNAAA--AA-TA--------CTTT--AATAAAA----------------A-GA----------------ATGTCAA--TATT-------------T-----AG-GCT------G-------------TATG----ATTTNCATTGGTTACAATCAGGCNTTCAAGATAGAG---GTTAGCGCAGCCTTGCGAAAACACTTTCCACGCATAAATAAANACTGAAGCCTGAACAAGCATTATGGCACCATACAAATATGTAAACAATGTTAAATTCTGATGCAGGAAATACCTGCCAGAATGGGACTGAGCGTGAGT---TTC----TTC----CTTCTTGTTGATAATCANTCGGAATTCCTCTNT-AATGTTCGCAGATTTGCATTGCATTTGGGGCT------------GCGTNTTACATTCA-------ATGTAAGATTGACACGGAGCTGGAAACCAGCATTCCATT--------------A-AAACAA---AATGGTTGTCAAATGCAGGAGTGNTCACTT---TTTC-CGAACCGGAAGTAAAGTGAACAAGTCAT----TGGAGTTT
Reference ( family-664 ) : NTAACCTGCATNCAGCAGCCAGTCTACGTATCTTGACTGTGACTCC-TGCTGCAATTGGCGTCCATTTCCGTTGGG-CATANAATAATATTTNATGCACGTAATAATCTTTTAACACGTTTT--TTT-TAAAAA-GTTTT----AAT-GTTTGTCTTATTTTTAAA--AA-TA--------CTTT--AATAAAA----------------A-GA----------------ATGTCAA--TATT-------------T-----AG-GCT------G-------------TATG----ATTTATATTGGTTACAATCAGGCTTTCAAGATAGAG---GTTAGCGCAGCCTTGCGAAAACACTTTCCACGCATAAATAAACATCGAAGCCTGAACAAGCATTATGGCACCATNNAGATATGTAAACAATGTNAAATNCTGATGCAGGAAATANCTGCCAGAATGGGACTGAGCGCG------TTC----TT-----CTTCTTGTTGATAATCANTCGGAATTCCTCTNT-AATGTTCGCAGATTTGCATTGCATTTGGGGCT------------GCGCNTTACATCNA-------ATGTAAGATTGACACGGAGCTGGAAACCAGCATTCCATT--------------ACAAACAA---AATGGTTGTCAAATGCAGGAGTGNTNACTT---TTTC-CAAACCGGAAGTAAAGCGAACAAGTCAT----TGGAGTTT
gi|1 : CCAGTCTGAGCATCTTGACTGTGGCTCC-GGCTGCAACTGGCGTCCATTTTTGCTGGA-CATAAAATAATATTTCATGCACGCAATAATATTCTAACACGTTTTGTTTT-TAAAAAAGTCTTTAAAAAT-A-----CTTAAATAAAAA--AA-TATAGTTTATCTTTGTATTGAAA----------------A-GA----------------ATGTCAA--TATTAACGCCGGAAATTC-----AG-CCC------G-------------TATG----ATTTCCATTGGTTACAATC-GGTTTTCAAGATAAAG---GTAAGCGCATCCTTGCAAAAACATTTTCCACATATAAATAAAAACTGAAACCTGAACAAGAATTATAGCACCATTAAAATATGTAAACAATGTGAAATTCTGATGCAAAAAATAACTGCCAGAATGGGACTGAGCGTGAGTGTCTTCAAGTCT-----CTTTTTGTTGATAATCTTTCGGAATTCTTCTTT-AATGTTCGCAGATTTGCATTGAATTTTGGGCT------------GCGCCCGACATTCA-------CGGTAAGTTTGACTCGGGGCCGACAAGCAGCATTACATTAACTTCGTAACAAAATAAACAA---AATGGCAGTCAAATGC---AGTGATAATTT---TTTTGCGAACCGTAAGTGAAGC-----AGTCG-----TGGAGTTT
gi|11 : taTGTTGATAATCATTTGGAATTCCTATTT-AATATACAAAGATTTGCATTGCAGTTAGGGTT------------gtgtcagggctagcattagatccattatattgtgtgggttatacatgcatttattgttacgttgacggacattatcctgatatacgtgtata
gi|12 : AACCTGCATTCAGCAGCAAGTCTACGTATCTCTACAGTGAGTTC-TGCTGCGATTGGCGTtgggaggtatt
gi|14 : TAACTTTAATACAACAGCCAGTCTATTTAGCTTGACTGCAATTCCAAACTGCAA
gi|15 : acatACGGAGCTAGAAACCAGCATTCCA--------------------ACAA---AATGGTTGTCAAATGCACGAGTG
gi|16 : TGGAAACCAACATTCCATT------------------------------TTA--AAATGCAGATGTGTT---TT---TTTC-CGAATAGGAcaa
gi|2 : gaTAACCTGCATACAGTATCCAGTCTAAGTATCTTGACTGTGACTCA-TACTGCAGTTGGCGTCCATTTCCGTTGGG-CATAAAATAATATTTCATGCACGTATTACTCTTTTAGCACGTTTT--TTTCTCAA---GTTTC----AAT-GTTTGTTTTATTTTTAAA--AA-TA--------CTTT----TGAAA----------------A-GA----------------ATGTCAA--TATT-------------T-----AG-GCT------G-------------TAT-----ATTTATATTGGTTACCATC-GGCGCTCAATAAAGAG---GTTAGCGCAGCCTTGCGAAAACATTTACCACACATAAATAAAAACTGAAGCCTGAACAAGCATTATGGGACCATACAAATATGTAAACAATGTTAAATTCTGATGCAGGAAATACCTGCTAGAATGGGACTGAGCG-----------------------TTCTTGTTGATAATCAATCGGAAGTCTTCTAT-AAAGTTCGCAGATTTGCATAGCATTTGGGGCT------------GCGTATTATACCAA-------ATGTAAAACTGACACGGGATTGGCAACCAATATTTCATTA-------------ACAAACAA---ATTGGAAGTCAAATGCAGGAGTGGTCACTT---TTTC-TGAACCGGAAGTAGAGTAAACA---CATCCGGTGGCGTTT
gi|3 : gTAACCTGCATTCAGTAGCCAGTCAACATATCTTGAATGTGACTCC-TGCTGCAATTTGCATCCATTTCCATTCAG-CATACAATTGTATTTGATGCACATATTAATCTTTTAGTA-GTTTG--T-----AAAA-GTTTT----AAT-GTTTGTCTTATTTTTAAA--AAATT--------CTTA--AATAAAA----------------A-AATGTTGTTTATTTAACAATGTCAA--TAAT-------------T------G-GCT------GAAAATTCAGCCCATATG----ATTTTCTTTGGTTACAATCAGGCTTTCAAGA-AGGGTTAGTTAGCACAGCCTTGTGAAAACACTTCCCATGCATACATTAACATTAACGCCTGAACAAGCATTCTGACACCATACAGATATGTAAACAATGTTAAATACTGATGCAGGAAAAATCTGCTAGAATGGGACAGAACATGAGT---TTC----TTCA---CTTCTTGTTGATAATCAGTTGGAGTTCCTCTAT-AATGTTTGCAGATTTGCATTGCATTTGGGACA------------GCGTATT
gi|4 : cTAACCTGCATACAGCAGCCAGTCTATGTACCTTGACTGTGACTCC-TGCTGCAATTGGCGTCCATGTCCGTTGGGACACATTATGATATTTGATGCACGTAGTAATCTTTTAGCACG---T--TTT-TAAAAA-GTTTT----AAT-GTTCGTCTTATTTTTAAAAGAA-TA--------CTTT--AACAAAA-------------------A----------------ATGT-AATTTATT-------------T-----AA-Ggta
gi|5 : aagcaaaatagaggtggttctatatagggttgtaagaaattggcatttatcagcttaatttatgtgcattgtttatattaaatcatattctgttgttgtttggtgtttagaatcgctttcaacaacagtattctaagcactgccacactggagtatcaagcctcagacATACCTGCCAAAATGGGACTAAACAAG------TTT----TTTTTCTCTTCTTGTTGATAATCAATCTGAACTCCTCTAT-ATTGTTCTCAGATTTGCATTGCATTTGAGCCT------------GCATTTTATACCCAGCAATTCATGTAAGACTGAATCGAAGATGGAAACCAGCATTCCA--------------------ACAA---AATGGTTGTCAAATGCAGAAGTGTTCACAT---TCTC-TAAACTGGAAGTAAAGTGAACAAGTCAT----TGGAGTTTaatatcaatatttgg
gi|6 : TTTTAACATGTTTT--T----AAAAT-GTTTT----CAT-GTTTGTCTTATATTAAAAGAAA-TA--------CTTA--AATAAAATCATGTAGTTTATATAA-GA----------------ATTTCAA--TATT-------------TTGTCCAGAGTTCAACCGG-------------TATG----ATTTTAATTGTTTACAATCAGGCATTCAAGATTGAG---GTTAACGCAGACTTACTAAAACACTTTCCATGCATAAATAAACATCGAAGTCTGAACAAGCATTATGACgcctctatccatgttccaaatatcattggatttacttcagtatatttagttatgttccagaaagaaattctgatagatgcatac
gi|7 : TGATG-TCAATCAACATTTCTCCGTGAAT-TCCTCAGA---GAATTAC-CTTAAGGCTCGGTTCAATTTGATGCTCTGCATTCA-------ATGTAAAATTGACACGCAGATGACAACCTGCATTCCATT--------------TAAAGCGGTGCAATGATTGTCAAATGCAATCGTGATCATTTTTCTTTC-TAAA--GGACGTACAGTGAACCAGT-AT----TGGAGCT
gi|8 : ACTGTGACTCT-TGCTGCAAAGAGCGGCCATT--------------GAA-AACATTGTATACATGTAA-ACTCTTTTAATTTATATG--TTT-TGTAAA-GTCTT----AAAAGTTATTTTTCTTTTCAAA--GA-TA--------CTTT--AATAAAA----------------ATGA----------------ATGGAAG--TATT-------------T----------T------C-------------TATAAAGTATTTATATT
gi|9 : CATTACATTTGGTGCT------------GCG----ACATTCA-------ATGTAAGATTGACACAGAGCTGGAAACAAGCATTCC--T--------------ACA------------------AAATGCAGGTGTGTTAACTT---TTTC-CAAACAGGAAtaaaagaatgacaatacttaggcgggacattcagctcat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAGTTTTAATACTTTAATAAAAATGAATAGAAGTCTGAAGTTGTTTTTAATTGAAAAGAATGTTGATATAAAGGCAGAAACTCAGCCTGTA
Unaligned ( gi|13 ): TTTTAAAAAAAAATACTTTAATAAAAAATGTATTTTTTTTAAGAATGTCAATATTTGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111 1111 11 22222222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 111 55555555555555555 11 2222222 7777777777777777777777777777 111 22222
lowQualScore : 1 3 5 0 8 1 0 1 11 0 3 33333333 6 4444 6 1 1 88 6 44444444 99 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 11 5 1 9 777 0 1 1 0 99999999999999999 1 1 11 6666666 1 1 7777777777777777777777777777 1 22 1 33 1 6 111 6 66 0 6 66 2 44444
lowQualScore : . . . . . . . . .. . . ........ . .... . . . .. . ........ .. .............................................................................................. . .. . . . ... . . . . ................. . . .. ....... . . ............................ . .. . .. . . ... . .. . . .. . .....
lowQualScore : 4 7 7 8 0 0 8 0 88 6 7 77777777 7 2222 7 8 0 33 7 22222222 22 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 22 5 0 8 555 2 2 0 2 00000000000000000 0 0 33 0000000 0 3 1111111111111111111111111111 6 11 4 66 0 7 777 7 22 8 5 22 5 55555
consensus : NTAACCTGCATACAGCAGCCAGTCTACGTATCTTGACTGTGACTCC-TGCTGCAATTGGCGTCCATTTCCGTTGGG-CATANAATAATATTTNATGCACGTANTAATCTTTTAGCACGTTTT--TTT-TAAAAA-GTTTT----AAT-GTTTGTCTTATTTTNAAA--AA-TA--------CTTT--AATAAAA----------------A-GA----------------ATGTCAA--TATT-------------T-----AG-GCT------G-------------TATGATTTTCATTGGTTACAATCAGGCNTTCAAGATAGAG---GTTAGCGCAGCCTTGCGAAAACACTTTCCACGCATAAATAAANACTGAAGCCTGAACAAGCATTATGGCACCATACAAATATGTAAACAATGTTAAATTCTGATGCAGGAAATACCTGCCAGAATGGGACTGAGCGTGAGTTTCTTCA-----CTTCTTGTTGATAATCANTCGGAATTCCTCTATAATGTTCGCAGATTTGCATTGCATTTGGGGCTGCGT-TTACATTCA-------ATGTAAGATTGACACGGAGCTGGAAACCAGCATTCCA-TTA---------------AAACAA---AATGGTTGTCAAATGCAGGAGTGNTCACTT---TTTC-CGAACCGGAAGTAAAGTGAACAAGTCAT----TGGAGTTT
Reference ( family-664 ) : NTAACCTGCATACAGCAGCCAGTCTACGTATCTTGACTGTGACTCC-TGCTGCAATTGGCGTCCATTTCCGTTGGG-CATANAATAATATTTNATGCACGTANTAATCTTTTAGCACGTTTT--TTT-TAAAAA-GTTTT----AAT-GTTTGTCTTATTTTNAAA--AA-TA--------CTTT--AATAAAA----------------A-GA----------------ATGTCAA--TATT-------------T-----AG-GCT------G-------------TATGATTTNCATTGGTTACAATCAGGCNTTCAAGATAGAG---GTTAGCGCAGCCTTGCGAAAACACTTTCCACGCATAAATAAANACTGAAGCCTGAACAAGCATTATGGCACCATACAAATATGTAAACAATGTTAAATTCTGATGCAGGAAATACCTGCCAGAATGGGACTGAGCGTGAGTTTCTTC------CTTCTTGTTGATAATCANTCGGAATTCCTCTNTAATGTTCGCAGATTTGCATTGCATTTGGGGCTGCGTNTTACATTCA-------ATGTAAGATTGACACGGAGCTGGAAACCAGCATTCCA-TTA---------------AAACAA---AATGGTTGTCAAATGCAGGAGTGNTCACTT---TTTC-CGAACCGGAAGTAAAGTGAACAAGTCAT----TGGAGTTT
gi|1 : CCAGTCTGAGCATCTTGACTGTGGCTCC-GGCTGCAACTGGCGTCCATTTTTGCTGGA-CATAAAATAATATTTCATGCACGCAATAATATTCTAACACGTTTTGTTTT-TAAAAAAGTCTTTAAAAAT-A-----CTTAAATAAAAA--AA-TATAGTTTATCTTTGTATTGAAA----------------A-GA----------------ATGTCAA--TATTAACGCCGGAAATTC-----AG-CCC------G-------------TATGATTTCCATTGGTTACAATC-GGTTTTCAAGATAAAG---GTAAGCGCATCCTTGCAAAAACATTTTCCACATATAAATAAAAACTGAAACCTGAACAAGAATTATAGCACCATTAAAATATGTAAACAATGTGAAATTCTGATGCAAAAAATAACTGCCAGAATGGGACTGAGCGTGAGTGTCTTCAAGTCTCTTTTTGTTGATAATCTTTCGGAATTCTTCTTTAATGTTCGCAGATTTGCATTGAATTTTGGGCTGCGCCCGACATTCA-------CGGTAAGTTTGACTCGGGGCCGACAAGCAGCATTACA-TTAACTTCGTAACAAAATAAACAA---AATGGCAGTCAAATGC---AGTGATAATTT---TTTTGCGAACCGTAAGTGAAGC-----AGTCG-----TGGAGTTT
gi|11 : taTGTTGATAATCATTTGGAATTCCTATTTAATATACAAAGATTTGCATTGCAGTTAGGGTTgtgtcagggctagcattagatccattatattgtgtgggttatacatgcatttattgttacgttgacggacattatcctgatatacgtgtata
gi|12 : AACCTGCATTCAGCAGCAAGTCTACGTATCTCTACAGTGAGTTC-TGCTGCGATTGGCGTtgggaggtatt
gi|14 : TAACTTTAATACAACAGCCAGTCTATTTAGCTTGACTGCAATTCCAAACTGCAA
gi|15 : acatACGGAGCTAGAAACCAGCATTCCA---------------------ACAA---AATGGTTGTCAAATGCACGAGTG
gi|16 : TGGAAACCAACATTCCA-TT------------------------------TTA--AAATGCAGATGTGTT---TT---TTTC-CGAATAGGAcaa
gi|2 : gaTAACCTGCATACAGTATCCAGTCTAAGTATCTTGACTGTGACTCA-TACTGCAGTTGGCGTCCATTTCCGTTGGG-CATAAAATAATATTTCATGCACGTATTACTCTTTTAGCACGTTTT--TTTCTCAA---GTTTC----AAT-GTTTGTTTTATTTTTAAA--AA-TA--------CTTT----TGAAA----------------A-GA----------------ATGTCAA--TATT-------------T-----AG-GCT------G-------------TAT-ATTTATATTGGTTACCATC-GGCGCTCAATAAAGAG---GTTAGCGCAGCCTTGCGAAAACATTTACCACACATAAATAAAAACTGAAGCCTGAACAAGCATTATGGGACCATACAAATATGTAAACAATGTTAAATTCTGATGCAGGAAATACCTGCTAGAATGGGACTGAGCG------------------TTCTTGTTGATAATCAATCGGAAGTCTTCTATAAAGTTCGCAGATTTGCATAGCATTTGGGGCTGCGTATTATACCAA-------ATGTAAAACTGACACGGGATTGGCAACCAATATTTCA-TTAAC-------------AAACAA---ATTGGAAGTCAAATGCAGGAGTGGTCACTT---TTTC-TGAACCGGAAGTAGAGTAAACA---CATCCGGTGGCGTTT
gi|3 : gTAACCTGCATTCAGTAGCCAGTCAACATATCTTGAATGTGACTCC-TGCTGCAATTTGCATCCATTTCCATTCAG-CATACAATTGTATTTGATGCACATATTAATCTTTTAGTA-GTTTG--T-----AAAA-GTTTT----AAT-GTTTGTCTTATTTTTAAA--AAATT--------CTTA--AATAAAA----------------A-AATGTTGTTTATTTAACAATGTCAA--TAAT-------------T------G-GCT------GAAAATTCAGCCCATATGATTTTCTTTGGTTACAATCAGGCTTTCAAGA-AGGGTTAGTTAGCACAGCCTTGTGAAAACACTTCCCATGCATACATTAACATTAACGCCTGAACAAGCATTCTGACACCATACAGATATGTAAACAATGTTAAATACTGATGCAGGAAAAATCTGCTAGAATGGGACAGAACATGAGTTTCTTCA-----CTTCTTGTTGATAATCAGTTGGAGTTCCTCTATAATGTTTGCAGATTTGCATTGCATTTGGGACAGCGTATT
gi|4 : cTAACCTGCATACAGCAGCCAGTCTATGTACCTTGACTGTGACTCC-TGCTGCAATTGGCGTCCATGTCCGTTGGGACACATTATGATATTTGATGCACGTAGTAATCTTTTAGCACG---T--TTT-TAAAAA-GTTTT----AAT-GTTCGTCTTATTTTTAAAAGAA-TA--------CTTT--AACAAAA-------------------A----------------ATGT-AATTTATT-------------T-----AA-Ggta
gi|5 : aagcaaaatagaggtggttctatatagggttgtaagaaattggcatttatcagcttaatttatgtgcattgtttatattaaatcatattctgttgttgtttggtgtttagaatcgctttcaacaacagtattctaagcactgccacactggagtatcaagcctcagacATACCTGCCAAAATGGGACTAAACA--AGTTTTTTTTCT---CTTCTTGTTGATAATCAATCTGAACTCCTCTATATTGTTCTCAGATTTGCATTGCATTTGAGCCTGCATTTTATACCCAGCAATTCATGTAAGACTGAATCGAAGATGGAAACCAGCATTCCA---------------------ACAA---AATGGTTGTCAAATGCAGAAGTGTTCACAT---TCTC-TAAACTGGAAGTAAAGTGAACAAGTCAT----TGGAGTTTaatatcaatatttgg
gi|6 : TTTTAACATGTTTT--T----AAAAT-GTTTT----CAT-GTTTGTCTTATATTAAAAGAAA-TA--------CTTA--AATAAAATCATGTAGTTTATATAA-GA----------------ATTTCAA--TATT-------------TTGTCCAGAGTTCAACCGG-------------TATGATTTTAATTGTTTACAATCAGGCATTCAAGATTGAG---GTTAACGCAGACTTACTAAAACACTTTCCATGCATAAATAAACATCGAAGTCTGAACAAGCATTATGACgcctctatccatgttccaaatatcattggatttacttcagtatatttagttatgttccagaaagaaattctgatagatgcatac
gi|7 : ATTTGATGCT-----CTGCATTCA-------ATGTAAAATTGACACGCAGATGACAACCTGCATTCCATTTA---------------AAGCGGTGCAATGATTGTCAAATGCAATCGTGATCATTTTTCTTTC-TAAA--GGACGTACAGTGAACCAGT-AT----TGGAGCT
gi|8 : tgatgtcaatcaacatttctccgtgaattcctcagagaattaccttaaggctcggttcaACTGTGACTCT-TGCTGCAAAGAGCGGCCATT--------------GAA-AACATTGTATACATGTAA-ACTCTTTTAATTTATATG--TTT-TGTAAA-GTCTT----AAAAGTTATTTTTCTTTTCAAA--GA-TA--------CTTT--AATAAAA----------------ATGA----------------ATGGAAG--TATT-------------T-----
gi|9 : CATTACATTTGGTGCTGCG----ACATTCA-------ATGTAAGATTGACACAGAGCTGGAAACAAGCATTCC--T-------------------ACA--------------AAATGCAGGTGTGTTAACTT---TTTC-CAAACAGGAAtctataaagtatttatatttaaaagaatgacaatacttaggcgggacattcagctcat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAGTTTTAATACTTTAATAAAAATGAATAGAAGTCTGAAGTTGTTTTTAATTGAAAAGAATGTTGATATAAAGGCAGAAACTCAGCCTGTA
Unaligned ( gi|13 ): TTTTAAAAAAAAATACTTTAATAAAAAATGTATTTTTTTTAAGAATGTCAATATTTGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111 1111 11 22222222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 111 1111 222222 44444444444444444 77777777777777777777777777777 111 22222
lowQualScore : 1 3 5 0 8 1 0 1 11 0 3 33333333 6 4444 6 1 1 88 6 44444444 99 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 11 5 1 9 777 0 1 1 0 2222 3 0 888888 1 1 0 22222222222222222 0 1 1 55555555555555555555555555555 1 22 1 33 1 6 111 6 66 0 6 66 2 44444
lowQualScore : . . . . . . . . .. . . ........ . .... . . . .. . ........ .. .............................................................................................. . .. . . . ... . . . . .... . . ...... . . . ................. . . . ............................. . .. . .. . . ... . .. . . .. . .....
lowQualScore : 4 7 7 8 0 0 8 0 88 6 7 77777777 7 2222 7 8 0 33 7 22222222 22 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 55 5 0 8 555 2 2 0 2 0000 0 2 555555 0 4 7 11111111111111111 8 0 3 11111111111111111111111111111 6 11 4 66 0 7 777 7 22 8 5 22 5 55555
consensus : NTAACCTGCATACAGCAGCCAGTCTACGTATCTTGACTGTGACTCC-TGCTGCAATTGGCGTCCATTTCCGTTGGG-CATANAATAATATTTNATGCACGTANTAATCTTTTAGCACGTTTT--TTT-TAAAAA-GTTTT----AAT-GTTTGTCTTATTTTNAAA--AA-TA--------CTTT--AATAAAA----------------A-GA----------------ATGTCAA--TATT-------------T-----AG-GCT------G-------------TATGATTTTCATTGGTTACAATCAGGCNTTCAAGATAGAG---GTTAGCGCAGCCTTGCGAAAACACTTTCCACGCATAAATAAANACTGAAGCCTGAACAAGCATTATGGCACCATACAAATATGTAAACAATGTTAAATTCTGATGCAGGAAATACCTGCCAGAATGGGACTGAGCGTGAGTTTCTTCA-----CTTCTTGTTGATAATCANTCGGAATTCCTCTATAATGTTCGCAGATTTGCATTGCATTTGGGGCTGCGT-C---T-AC------ATTCAATGTAAGATTGACACGGAGCTGGAAACCAGCATTCCA-TTA---------------AAACAA---AATGGTTGTCAAATGCAGGAGTGNTCACTT---TTTC-CGAACCGGAAGTAAAGTGAACAAGTCAT----TGGAGTTT
Reference ( family-664 ) : NTAACCTGCATACAGCAGCCAGTCTACGTATCTTGACTGTGACTCC-TGCTGCAATTGGCGTCCATTTCCGTTGGG-CATANAATAATATTTNATGCACGTANTAATCTTTTAGCACGTTTT--TTT-TAAAAA-GTTTT----AAT-GTTTGTCTTATTTTNAAA--AA-TA--------CTTT--AATAAAA----------------A-GA----------------ATGTCAA--TATT-------------T-----AG-GCT------G-------------TATGATTTTCATTGGTTACAATCAGGCNTTCAAGATAGAG---GTTAGCGCAGCCTTGCGAAAACACTTTCCACGCATAAATAAANACTGAAGCCTGAACAAGCATTATGGCACCATACAAATATGTAAACAATGTTAAATTCTGATGCAGGAAATACCTGCCAGAATGGGACTGAGCGTGAGTTTCTTCA-----CTTCTTGTTGATAATCANTCGGAATTCCTCTATAATGTTCGCAGATTTGCATTGCATTTGGGGCTGCGT-T---T-AC------ATTCAATGTAAGATTGACACGGAGCTGGAAACCAGCATTCCA-TTA---------------AAACAA---AATGGTTGTCAAATGCAGGAGTGNTCACTT---TTTC-CGAACCGGAAGTAAAGTGAACAAGTCAT----TGGAGTTT
gi|1 : CCAGTCTGAGCATCTTGACTGTGGCTCC-GGCTGCAACTGGCGTCCATTTTTGCTGGA-CATAAAATAATATTTCATGCACGCAATAATATTCTAACACGTTTTGTTTT-TAAAAAAGTCTTTAAAAAT-A-----CTTAAATAAAAA--AA-TATAGTTTATCTTTGTATTGAAA----------------A-GA----------------ATGTCAA--TATTAACGCCGGAAATTC-----AG-CCC------G-------------TATGATTTCCATTGGTTACAATC-GGTTTTCAAGATAAAG---GTAAGCGCATCCTTGCAAAAACATTTTCCACATATAAATAAAAACTGAAACCTGAACAAGAATTATAGCACCATTAAAATATGTAAACAATGTGAAATTCTGATGCAAAAAATAACTGCCAGAATGGGACTGAGCGTGAGTGTCTTCAAGTCTCTTTTTGTTGATAATCTTTCGGAATTCTTCTTTAATGTTCGCAGATTTGCATTGAATTTTGGGCTGCGC-C---CGAC------ATTCACGGTAAGTTTGACTCGGGGCCGACAAGCAGCATTACA-TTAACTTCGTAACAAAATAAACAA---AATGGCAGTCAAATGC---AGTGATAATTT---TTTTGCGAACCGTAAGTGAAGC-----AGTCG-----TGGAGTTT
gi|11 : taTGTTGATAATCATTTGGAATTCCTATTTAATATACAAAGATTTGCATTGCAGTTAGGGTTgtgtcagggctagcattagatccattatattgtgtgggttatacatgcatttattgttacgttgacggacattatcctgatatacgtgtata
gi|12 : AACCTGCATTCAGCAGCAAGTCTACGTATCTCTACAGTGAGTTC-TGCTGCGATTGGCGTtgggaggtatt
gi|14 : TAACTTTAATACAACAGCCAGTCTATTTAGCTTGACTGCAATTCCAAACTGCAA
gi|15 : acatACGGAGCTAGAAACCAGCATTCCA---------------------ACAA---AATGGTTGTCAAATGCACGAGTG
gi|16 : TGGAAACCAACATTCCA-TT------------------------------TTA--AAATGCAGATGTGTT---TT---TTTC-CGAATAGGAcaa
gi|2 : gaTAACCTGCATACAGTATCCAGTCTAAGTATCTTGACTGTGACTCA-TACTGCAGTTGGCGTCCATTTCCGTTGGG-CATAAAATAATATTTCATGCACGTATTACTCTTTTAGCACGTTTT--TTTCTCAA---GTTTC----AAT-GTTTGTTTTATTTTTAAA--AA-TA--------CTTT----TGAAA----------------A-GA----------------ATGTCAA--TATT-------------T-----AG-GCT------G-------------TAT-ATTTATATTGGTTACCATC-GGCGCTCAATAAAGAG---GTTAGCGCAGCCTTGCGAAAACATTTACCACACATAAATAAAAACTGAAGCCTGAACAAGCATTATGGGACCATACAAATATGTAAACAATGTTAAATTCTGATGCAGGAAATACCTGCTAGAATGGGACTGAGCG------------------TTCTTGTTGATAATCAATCGGAAGTCTTCTATAAAGTTCGCAGATTTGCATAGCATTTGGGGCTGCGTAT---T-AT------ACCAAATGTAAAACTGACACGGGATTGGCAACCAATATTTCA-TTAAC-------------AAACAA---ATTGGAAGTCAAATGCAGGAGTGGTCACTT---TTTC-TGAACCGGAAGTAGAGTAAACA---CATCCGGTGGCGTTT
gi|3 : gTAACCTGCATTCAGTAGCCAGTCAACATATCTTGAATGTGACTCC-TGCTGCAATTTGCATCCATTTCCATTCAG-CATACAATTGTATTTGATGCACATATTAATCTTTTAGTA-GTTTG--T-----AAAA-GTTTT----AAT-GTTTGTCTTATTTTTAAA--AAATT--------CTTA--AATAAAA----------------A-AATGTTGTTTATTTAACAATGTCAA--TAAT-------------T------G-GCT------GAAAATTCAGCCCATATGATTTTCTTTGGTTACAATCAGGCTTTCAAGA-AGGGTTAGTTAGCACAGCCTTGTGAAAACACTTCCCATGCATACATTAACATTAACGCCTGAACAAGCATTCTGACACCATACAGATATGTAAACAATGTTAAATACTGATGCAGGAAAAATCTGCTAGAATGGGACAGAACATGAGTTTCTTCA-----CTTCTTGTTGATAATCAGTTGGAGTTCCTCTATAATGTTTGCAGATTTGCATTGCATTTGGGACAGCGT-
gi|4 : cTAACCTGCATACAGCAGCCAGTCTATGTACCTTGACTGTGACTCC-TGCTGCAATTGGCGTCCATGTCCGTTGGGACACATTATGATATTTGATGCACGTAGTAATCTTTTAGCACG---T--TTT-TAAAAA-GTTTT----AAT-GTTCGTCTTATTTTTAAAAGAA-TA--------CTTT--AACAAAA-------------------A----------------ATGT-AATTTATT-------------T-----AA-Gattgta
gi|5 : aagcaaaatagaggtggttctatatagggttgtaagaaattggcatttatcagcttaatttatgtgcattgtttatattaaatcatattctgttgttgtttggtgtttagaatcgctttcaacaacagtattctaagcactgccacactggagtatcaagcctcagacATACCTGCCAAAATGGGACTAAACAAGTTTTTTTTCT-----CTTCTTGTTGATAATCAATCTGAACTCCTCTATATTGTTCTCAGATTTGCATTGCATTTGAGCCTGCAT-TTTAT-ACCCAGCAATTC-ATGTAAGACTGAATCGAAGATGGAAACCAGCATTCC---------------------AACAA---AATGGTTGTCAAATGCAGAAGTGTTCACAT---TCTC-TAAACTGGAAGTAAAGTGAACAAGTCAT----TGGAGTTTaatatcaatatttgg
gi|6 : TTTTAACATGTTTT--T----AAAAT-GTTTT----CAT-GTTTGTCTTATATTAAAAGAAA-TA--------CTTA--AATAAAATCATGTAGTTTATATAA-GA----------------ATTTCAA--TATT-------------TTGTCCAGAGTTCAACCGG-------------TATGATTTTAATTGTTTACAATCAGGCATTCAAGATTGAG---GTTAACGCAGACTTACTAAAACACTTTCCATGCATAAATAAACATCGAAGTCTGAACAAGCATTATGACgcctctatccatgttccaaatatcattggatttacttcagtatatttagttatgttccagaaagaaattctgatagatgcatac
gi|7 : ATTTGA---TGC-T-C---T-GC------ATTCAATGTAAAATTGACACGCAGATGACAACCTGCATTCCATTTA---------------AAGCGGTGCAATGATTGTCAAATGCAATCGTGATCATTTTTCTTTC-TAAA--GGACGTACAGTGAACCAGT-AT----TGGAGCT
gi|8 : tgatgtcaatcaacatttctccgtgaattcctcagagaattaccttaaggctcggttcaACTGTGACTCT-TGCTGCAAAGAGCGGCCATT--------------GAA-AACATTGTATACATGTAA-ACTCTTTTAATTTATATG--TTT-TGTAAA-GTCTT----AAAAGTTATTTTTCTTTTCAAA--GA-TA--------CTTT--AATAAAA----------------ATGA----------------ATGGAAG--TATT-------------T-----
gi|9 : CATTACATTTGGTGCTGCG--------AC------ATTCAATGTAAGATTGACACAGAGCTGGAAACAAGCATTCC--T-------------------ACA--------------AAATGCAGGTGTGTTAACTT---TTTC-CAAACAGGAAtctataaagtatttatatttaaaagaatgacaatacttaggcgggacattcagctcat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAGTTTTAATACTTTAATAAAAATGAATAGAAGTCTGAAGTTGTTTTTAATTGAAAAGAATGTTGATATAAAGGCAGAAACTCAGCCTGTA
Unaligned ( gi|13 ): TTTTAAAAAAAAATACTTTAATAAAAAATGTATTTTTTTTAAGAATGTCAATATTTGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111 1111 11 22222222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 111 1111 222222 44444444444444444 77777777777777777777777777777 111 22222
lowQualScore : 1 3 5 0 8 1 0 1 11 0 3 33333333 6 4444 6 1 1 88 6 44444444 99 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 11 5 1 9 777 0 1 1 0 2222 3 0 888888 1 1 0 11111111111111111 0 1 1 55555555555555555555555555555 1 22 1 33 1 6 111 6 66 0 6 66 2 44444
lowQualScore : . . . . . . . . .. . . ........ . .... . . . .. . ........ .. .............................................................................................. . .. . . . ... . . . . .... . . ...... . . . ................. . . . ............................. . .. . .. . . ... . .. . . .. . .....
lowQualScore : 4 7 7 8 0 0 8 0 88 6 7 77777777 7 2222 7 8 0 33 7 22222222 22 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 55 5 0 8 555 2 2 0 2 0000 0 2 555555 0 4 7 77777777777777777 8 0 3 11111111111111111111111111111 6 11 4 66 0 7 777 7 22 8 5 22 5 55555
consensus : NTAACCTGCATACAGCAGCCAGTCTACGTATCTTGACTGTGACTCC-TGCTGCAATTGGCGTCCATTTCCGTTGGG-CATANAATAATATTTNATGCACGTANTAATCTTTTAGCACGTTTT--TTT-TAAAAA-GTTTT----AAT-GTTTGTCTTATTTTNAAA--AA-TA--------CTTT--AATAAAA----------------A-GA----------------ATGTCAA--TATT-------------T-----AG-GCT------G-------------TATGATTTTCATTGGTTACAATCAGGCNTTCAAGATAGAG---GTTAGCGCAGCCTTGCGAAAACACTTTCCACGCATAAATAAANACTGAAGCCTGAACAAGCATTATGGCACCATACAAATATGTAAACAATGTTAAATTCTGATGCAGGAAATACCTGCCAGAATGGGACTGAGCGTGAGTTTCTTCA-----CTTCTTGTTGATAATCANTCGGAATTCCTCTATAATGTTCGCAGATTTGCATTGCATTTGGGGCTGCGT-C---T-AC------ATTCAATGTAAGATTGACACGGAGCTGGAAACCAGCATTCCA-TTA---------------AAACAA---AATGGTTGTCAAATGCAGGAGTGNTCACTT---TTTC-CGAACCGGAAGTAAAGTGAACAAGTCAT----TGGAGTTT
Reference ( family-664 ) : NTAACCTGCATACAGCAGCCAGTCTACGTATCTTGACTGTGACTCC-TGCTGCAATTGGCGTCCATTTCCGTTGGG-CATANAATAATATTTNATGCACGTANTAATCTTTTAGCACGTTTT--TTT-TAAAAA-GTTTT----AAT-GTTTGTCTTATTTTNAAA--AA-TA--------CTTT--AATAAAA----------------A-GA----------------ATGTCAA--TATT-------------T-----AG-GCT------G-------------TATGATTTTCATTGGTTACAATCAGGCNTTCAAGATAGAG---GTTAGCGCAGCCTTGCGAAAACACTTTCCACGCATAAATAAANACTGAAGCCTGAACAAGCATTATGGCACCATACAAATATGTAAACAATGTTAAATTCTGATGCAGGAAATACCTGCCAGAATGGGACTGAGCGTGAGTTTCTTCA-----CTTCTTGTTGATAATCANTCGGAATTCCTCTATAATGTTCGCAGATTTGCATTGCATTTGGGGCTGCGT-C---T-AC------ATTCAATGTAAGATTGACACGGAGCTGGAAACCAGCATTCCA-TTA---------------AAACAA---AATGGTTGTCAAATGCAGGAGTGNTCACTT---TTTC-CGAACCGGAAGTAAAGTGAACAAGTCAT----TGGAGTTT
gi|1 : CCAGTCTGAGCATCTTGACTGTGGCTCC-GGCTGCAACTGGCGTCCATTTTTGCTGGA-CATAAAATAATATTTCATGCACGCAATAATATTCTAACACGTTTTGTTTT-TAAAAAAGTCTTTAAAAAT-A-----CTTAAATAAAAA--AA-TATAGTTTATCTTTGTATTGAAA----------------A-GA----------------ATGTCAA--TATTAACGCCGGAAATTC-----AG-CCC------G-------------TATGATTTCCATTGGTTACAATC-GGTTTTCAAGATAAAG---GTAAGCGCATCCTTGCAAAAACATTTTCCACATATAAATAAAAACTGAAACCTGAACAAGAATTATAGCACCATTAAAATATGTAAACAATGTGAAATTCTGATGCAAAAAATAACTGCCAGAATGGGACTGAGCGTGAGTGTCTTCAAGTCTCTTTTTGTTGATAATCTTTCGGAATTCTTCTTTAATGTTCGCAGATTTGCATTGAATTTTGGGCTGCGC-C---CGAC------ATTCACGGTAAGTTTGACTCGGGGCCGACAAGCAGCATTACA-TTAACTTCGTAACAAAATAAACAA---AATGGCAGTCAAATGC---AGTGATAATTT---TTTTGCGAACCGTAAGTGAAGC-----AGTCG-----TGGAGTTT
gi|11 : taTGTTGATAATCATTTGGAATTCCTATTTAATATACAAAGATTTGCATTGCAGTTAGGGTTgtgtcagggctagcattagatccattatattgtgtgggttatacatgcatttattgttacgttgacggacattatcctgatatacgtgtata
gi|12 : AACCTGCATTCAGCAGCAAGTCTACGTATCTCTACAGTGAGTTC-TGCTGCGATTGGCGTtgggaggtatt
gi|14 : TAACTTTAATACAACAGCCAGTCTATTTAGCTTGACTGCAATTCCAAACTGCAA
gi|15 : acatACGGAGCTAGAAACCAGCATTCCA---------------------ACAA---AATGGTTGTCAAATGCACGAGTG
gi|16 : TGGAAACCAACATTCCA-TT------------------------------TTA--AAATGCAGATGTGTT---TT---TTTC-CGAATAGGAcaa
gi|2 : gaTAACCTGCATACAGTATCCAGTCTAAGTATCTTGACTGTGACTCA-TACTGCAGTTGGCGTCCATTTCCGTTGGG-CATAAAATAATATTTCATGCACGTATTACTCTTTTAGCACGTTTT--TTTCTCAA---GTTTC----AAT-GTTTGTTTTATTTTTAAA--AA-TA--------CTTT----TGAAA----------------A-GA----------------ATGTCAA--TATT-------------T-----AG-GCT------G-------------TAT-ATTTATATTGGTTACCATC-GGCGCTCAATAAAGAG---GTTAGCGCAGCCTTGCGAAAACATTTACCACACATAAATAAAAACTGAAGCCTGAACAAGCATTATGGGACCATACAAATATGTAAACAATGTTAAATTCTGATGCAGGAAATACCTGCTAGAATGGGACTGAGCG------------------TTCTTGTTGATAATCAATCGGAAGTCTTCTATAAAGTTCGCAGATTTGCATAGCATTTGGGGCTGCGTAT---T-AT------ACCAAATGTAAAACTGACACGGGATTGGCAACCAATATTTCA-TTAAC-------------AAACAA---ATTGGAAGTCAAATGCAGGAGTGGTCACTT---TTTC-TGAACCGGAAGTAGAGTAAACA---CATCCGGTGGCGTTT
gi|3 : gTAACCTGCATTCAGTAGCCAGTCAACATATCTTGAATGTGACTCC-TGCTGCAATTTGCATCCATTTCCATTCAG-CATACAATTGTATTTGATGCACATATTAATCTTTTAGTA-GTTTG--T-----AAAA-GTTTT----AAT-GTTTGTCTTATTTTTAAA--AAATT--------CTTA--AATAAAA----------------A-AATGTTGTTTATTTAACAATGTCAA--TAAT-------------T------G-GCT------GAAAATTCAGCCCATATGATTTTCTTTGGTTACAATCAGGCTTTCAAGA-AGGGTTAGTTAGCACAGCCTTGTGAAAACACTTCCCATGCATACATTAACATTAACGCCTGAACAAGCATTCTGACACCATACAGATATGTAAACAATGTTAAATACTGATGCAGGAAAAATCTGCTAGAATGGGACAGAACATGAGTTTCTTCA-----CTTCTTGTTGATAATCAGTTGGAGTTCCTCTATAATGTTTGCAGATTTGCATTGCATTTGGGACAGCGT-
gi|4 : cTAACCTGCATACAGCAGCCAGTCTATGTACCTTGACTGTGACTCC-TGCTGCAATTGGCGTCCATGTCCGTTGGGACACATTATGATATTTGATGCACGTAGTAATCTTTTAGCACG---T--TTT-TAAAAA-GTTTT----AAT-GTTCGTCTTATTTTTAAAAGAA-TA--------CTTT--AACAAAA-------------------A----------------ATGT-AATTTATT-------------T-----AA-Gattgta
gi|5 : aagcaaaatagaggtggttctatatagggttgtaagaaattggcatttatcagcttaatttatgtgcattgtttatattaaatcatattctgttgttgtttggtgtttagaatcgctttcaacaacagtattctaagcactgccacactggagtatcaagcctcagacATACCTGCCAAAATGGGACTAAACAAGTTTTTTTTCT-----CTTCTTGTTGATAATCAATCTGAACTCCTCTATATTGTTCTCAGATTTGCATTGCATTTGAGCCTGCAT-TTTAT-ACCCAGCAATTC-ATGTAAGACTGAATCGAAGATGGAAACCAGCATTCC---------------------AACAA---AATGGTTGTCAAATGCAGAAGTGTTCACAT---TCTC-TAAACTGGAAGTAAAGTGAACAAGTCAT----TGGAGTTTaatatcaatatttgg
gi|6 : TTTTAACATGTTTT--T----AAAAT-GTTTT----CAT-GTTTGTCTTATATTAAAAGAAA-TA--------CTTA--AATAAAATCATGTAGTTTATATAA-GA----------------ATTTCAA--TATT-------------TTGTCCAGAGTTCAACCGG-------------TATGATTTTAATTGTTTACAATCAGGCATTCAAGATTGAG---GTTAACGCAGACTTACTAAAACACTTTCCATGCATAAATAAACATCGAAGTCTGAACAAGCATTATGACgcctctatccatgttccaaatatcattggatttacttcagtatatttagttatgttccagaaagaaattctgatagatgcatac
gi|7 : ATTTGA---TGC-T-C---T-GC------ATTCAATGTAAAATTGACACGCAGATGACAACCTGCATTCCATTTA---------------AAGCGGTGCAATGATTGTCAAATGCAATCGTGATCATTTTTCTTTC-TAAA--GGACGTACAGTGAACCAGT-AT----TGGAGCT
gi|8 : tgatgtcaatcaacatttctccgtgaattcctcagagaattaccttaaggctcggttcaACTGTGACTCT-TGCTGCAAAGAGCGGCCATT--------------GAA-AACATTGTATACATGTAA-ACTCTTTTAATTTATATG--TTT-TGTAAA-GTCTT----AAAAGTTATTTTTCTTTTCAAA--GA-TA--------CTTT--AATAAAA----------------ATGA----------------ATGGAAG--TATT-------------T-----
gi|9 : CATTACATTTGGTGCTGCG--------AC------ATTCAATGTAAGATTGACACAGAGCTGGAAACAAGCATTCC--T-------------------ACA--------------AAATGCAGGTGTGTTAACTT---TTTC-CAAACAGGAAtctataaagtatttatatttaaaagaatgacaatacttaggcgggacattcagctcat
blockSeqs : A C A A A C TT C TTTCTC . . A T T AG A . . AAATGTTGTTTATTTAACAATGTCAATAATTGGCTGAAAATTCAGCCCA G AT A G A TTA A A TGAG T A T T ATTTTATACCCAGCA C A ATTTAAAGCGGTGC A TT T GA T C TTC . TA A AA C TCCGG
blockSeqs : A T . . C G TT C TTTTA . . . T T GA . . . TCATGTAGTTTATATAAGAATTTCAATATTTTGTCCAGAGTTCAACCGG G TC A T T . C C AGTT T T A A GTATTAT T A ATTAACAAACAA T TT T AT G C . . CC G CA C T
blockSeqs : T A . . T G GT T TTTTG . . . C T . . . . AGAATGTCAATATTTAGGCTG . TA . A . . T C . . . G A TCTGC A C AACAA A AA T GA T C . . CT G A . T
blockSeqs : A C . . G T A T TA . . . T A . . . . A A GAC A A AACAA A TT T AA A A . . CA
blockSeqs : T . . T . . . A C . . . . C C TACA . TT . TC T . . . .
blockSeqs : . A ATT . . . GT
blockSeqCons : TTTTN*** **** ******** ** GTCTAC*********** ATTACAA********************** GN
originalCons : NTAACCTGCATACAGCAGCCAGTCTACGTATCTTGACTGTGACTCC-TGCTGCAATTGGCGTCCATTTCCGTTGGG-CATANAATAATATTTNATGCACGTANTAATCTTTTAGCACGTTTT--TTT-TAAAAA-GTTTT----AAT-GTTTGTCTTATTTTNAAA--AA-TA--------CTTT--AATAAAA----------------A-GA----------------ATGTCAA--TATT-------------T-----AG-GCT------G-------------TATGATTTTCATTGGTTACAATCAGGCNTTCAAGATAGAG---GTTAGCGCAGCCTTGCGAAAACACTTTCCACGCATAAATAAANACTGAAGCCTGAACAAGCATTATGGCACCATACAAATATGTAAACAATGTTAAATTCTGATGCAGGAAATACCTGCCAGAATGGGACTGAGCGTGAGTTTCTTCA-----CTTCTTGTTGATAATCANTCGGAATTCCTCTATAATGTTCGCAGATTTGCATTGCATTTGGGGCTGCGT-C---T-AC------ATTCAATGTAAGATTGACACGGAGCTGGAAACCAGCATTCCA-TTA---------------AAACAA---AATGGTTGTCAAATGCAGGAGTGNTCACTT---TTTC-CGAACCGGAAGTAAAGTGAACAAGTCAT----TGGAGTTT
finalCons : NTAACCTGCATACAGCAGCCAGTCTACGTATCTTGACTGTGACTCC-TGCTGCAATTGGCGTCCATTTCCGTTGGG-CATANAATAATATTTNATGCACGTANTAATCTTTTAGCACGTTTTTTTTN---AAAA-GTTTT----AAT-GTTTGTCTTATTTTNAAA--AA-TA--------CTTT--AATAAAA----------------A-GA----------------ATGTCAA--TATT-------------T-----AG-GCT------G-------------TATGATTTTCATTGGTTACAATCAGGCNTTCAAGATAGAG---GTTAGCGCAGCCTTGCGAAAACACTTTCCACGCATAAATAAANACTGAAGCCTGAACAAGCATTATGGCACCATACAAATATGTAAACAATGTTAAATTCTGATGCAGGAAATACCTGCCAGAATGGGACTGAGCGTGAGTTTCTTCA-----CTTCTTGTTGATAATCANTCGGAATTCCTCTATAATGTTCGCAGATTTGCATTGCATTTGGGGCTGCGTCTAC-----------ATTCAATGTAAGATTGACACGGAGCTGGAAACCAGCATTCCATTACAA----------------------AATGGTTGTCAAATGCAGGNGTGNTCACTT---TTTC-CGAACCGGAAGTAAAGTGAACAAGTCAT----TGGAGTTT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAGTTTTAATACTTTAATAAAAATGAATAGAAGTCTGAAGTTGTTTTTAATTGAAAAGAATGTTGATATAAAGGCAGAAACTCAGCCTGTA
Unaligned ( gi|13 ): TTTTAAAAAAAAATACTTTAATAAAAAATGTATTTTTTTTAAGAATGTCAATATTTGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222 11 1111 11111 22222222 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 111 1111 222222 44444444444444444 7777777777777777777777777777777 111 22222
lowQualScore : 1 3 5 0 8 1 0 1 11 0 3 7777777 00 4444 6 1 1 11111 6 44444444 99 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2 11 5 1 9 777 0 1 1 0 2222 3 0 888888 1 1 0 11111111111111111 0 1 1 6666666666666666666666666666666 1 22 1 777 1 6 111 6 66 0 6 66 2 44444
lowQualScore : . . . . . . . . .. . . ....... .. .... . . . ..... . ........ .. .......................................................................................................... . .. . . . ... . . . . .... . . ...... . . . ................. . . . ............................... . .. . ... . . ... . .. . . .. . .....
lowQualScore : 4 7 7 8 0 0 8 0 88 6 7 5555555 22 2222 7 8 0 88888 7 22222222 22 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 55 5 0 8 555 2 2 0 2 0000 0 2 555555 0 4 7 77777777777777777 8 0 3 0000000000000000000000000000000 6 11 4 777 0 7 777 7 22 8 5 22 5 55555
consensus : NTAACCTGCATACAGCAGCCAGTCTACGTATCTTGACTGTGACTCC-TGCTGCAATTGGCGTCCATTTCCGTTGGG-CATANAATAATATTTNATGCACGTANTAATCTTTTAGCACGTTTT--TTTTAAAAA-GTTTT----AAT-GTTTGTCTTATTTTNAAA--A--A-TA--------CTTT--AATAAAA----------------A---------------GA----------------ATGTCAATATT-------------T-----AG-GCT------G-------------TATGATTTTCATTGGTTACAATCAGGCNTTCAAGATAGAG---GTTAGCGCAGCCTTGCGAAAACACTTTCCACGCATAAATAAANACTGAAGCCTGAACAAGCATTATGGCACCATACAAATATGTAAACAATGTTAAATTCTGATGCAGGAAATACCTGCCAGAATGGGACTGAGCGTGAGTTTCTTCA-----CTTCTTGTTGATAATCANTCGGAATTCCTCTATAATGTTCGCAGATTTGCATTGCATTTGGGGCTGCGT-C---T-AC------ATTCAATGTAAGATTGACACGGAGCTGGAAACCAGCATTCCATT------------------ACAA-------AATGGTTGTCAAATGCAGGNGTGNTCACTT---TTTC-CGAACCGGAAGTAAAGTGAACAAGTCAT----TGGAGTTT
Reference ( family-664 ) : NTAACCTGCATACAGCAGCCAGTCTACGTATCTTGACTGTGACTCC-TGCTGCAATTGGCGTCCATTTCCGTTGGG-CATANAATAATATTTNATGCACGTANTAATCTTTTAGCACGTTTT--TTTTNAAAA-GTTTT----AAT-GTTTGTCTTATTTTNAAA--A--A-TA--------CTTT--AATAAAA----------------A---------------GA----------------ATGTCAATATT-------------T-----AG-GCT------G-------------TATGATTTTCATTGGTTACAATCAGGCNTTCAAGATAGAG---GTTAGCGCAGCCTTGCGAAAACACTTTCCACGCATAAATAAANACTGAAGCCTGAACAAGCATTATGGCACCATACAAATATGTAAACAATGTTAAATTCTGATGCAGGAAATACCTGCCAGAATGGGACTGAGCGTGAGTTTCTTCA-----CTTCTTGTTGATAATCANTCGGAATTCCTCTATAATGTTCGCAGATTTGCATTGCATTTGGGGCTGCGT-C---T-AC------ATTCAATGTAAGATTGACACGGAGCTGGAAACCAGCATTCCATT------------------ACAA-------AATGGTTGTCAAATGCAGGNGTGNTCACTT---TTTC-CGAACCGGAAGTAAAGTGAACAAGTCAT----TGGAGTTT
gi|1 : CCAGTCTGAGCATCTTGACTGTGGCTCC-GGCTGCAACTGGCGTCCATTTTTGCTGGA-CATAAAATAATATTTCATGCACGCAATAATATTCTAACACGTTTTGTTTTTAAAAAAGTCTTTAAAAAT-A-----CTTAAATAAAAA--A--A-TATAGTTTATCTTTGTATTGAAA----------------A---------------GA----------------ATGTCAATATTAACGCCGGAAATTC-----AG-CCC------G-------------TATGATTTCCATTGGTTACAATC-GGTTTTCAAGATAAAG---GTAAGCGCATCCTTGCAAAAACATTTTCCACATATAAATAAAAACTGAAACCTGAACAAGAATTATAGCACCATTAAAATATGTAAACAATGTGAAATTCTGATGCAAAAAATAACTGCCAGAATGGGACTGAGCGTGAGTGTCTTCAAGTCTCTTTTTGTTGATAATCTTTCGGAATTCTTCTTTAATGTTCGCAGATTTGCATTGAATTTTGGGCTGCGC-C---CGAC------ATTCACGGTAAGTTTGACTCGGGGCCGACAAGCAGCATTACATTAACTTCGTAACAAAATAAACAA-------AATGGCAGTCAAATGCA---GTGATAATTT---TTTTGCGAACCGTAAGTGAAGC-----AGTCG-----TGGAGTTT
gi|11 : taTGTTGATAATCATTTGGAATTCCTATTTAATATACAAAGATTTGCATTGCAGTTAGGGTTgtgtcagggctagcattagatccattatattgtgtgggttatacatgcatttattgttacgttgacggacattatcctgatatacgtgtata
gi|12 : AACCTGCATTCAGCAGCAAGTCTACGTATCTCTACAGTGAGTTC-TGCTGCGATTGGCGTtgggaggtatt
gi|14 : TAACTTTAATACAACAGCCAGTCTATTTAGCTTGACTGCAATTCCAAACTGCAA
gi|15 : acatACGGAGCTAGAAACCAGCATTCCA--------------------ACAA-------AATGGTTGTCAAATGCACGAGTG
gi|16 : TGGAAACCAACATTCCATT----------------------------------TTA--AAATGCAGATGTGTT---TT---TTTC-CGAATAGGAcaa
gi|2 : gaTAACCTGCATACAGTATCCAGTCTAAGTATCTTGACTGTGACTCA-TACTGCAGTTGGCGTCCATTTCCGTTGGG-CATAAAATAATATTTCATGCACGTATTACTCTTTTAGCACGTTTT--TTTCTCAA--GTTTC----AAT-GTTTGTTTTATTTTTAAA--A--A-TA--------CTTT----TGAAA----------------A---------------GA----------------ATGTCAATATT-------------T-----AG-GCT------G-------------TAT-ATTTATATTGGTTACCATC-GGCGCTCAATAAAGAG---GTTAGCGCAGCCTTGCGAAAACATTTACCACACATAAATAAAAACTGAAGCCTGAACAAGCATTATGGGACCATACAAATATGTAAACAATGTTAAATTCTGATGCAGGAAATACCTGCTAGAATGGGACTGAGCG------------------TTCTTGTTGATAATCAATCGGAAGTCTTCTATAAAGTTCGCAGATTTGCATAGCATTTGGGGCTGCGTAT---T-AT------ACCAAATGTAAAACTGACACGGGATTGGCAACCAATATTTCATTAACAA-------------ACAA-------ATTGGAAGTCAAATGCAGGAGTGGTCACTT---TTTC-TGAACCGGAAGTAGAGTAAACA---CATCCGGTGGCGTTT
gi|3 : gTAACCTGCATTCAGTAGCCAGTCAACATATCTTGAATGTGACTCC-TGCTGCAATTTGCATCCATTTCCATTCAG-CATACAATTGTATTTGATGCACATATTAATCTTTTAGTA-GTTTG--T----AAAA-GTTTT----AAT-GTTTGTCTTATTTTTAAA--A--AATT--------CTTA--AATAAAA----------------A---------------AATGTTGTTTATTTAACAATGTCAATAAT-------------T------G-GCT------GAAAATTCAGCCCATATGATTTTCTTTGGTTACAATCAGGCTTTCAAGA-AGGGTTAGTTAGCACAGCCTTGTGAAAACACTTCCCATGCATACATTAACATTAACGCCTGAACAAGCATTCTGACACCATACAGATATGTAAACAATGTTAAATACTGATGCAGGAAAAATCTGCTAGAATGGGACAGAACATGAGTTTCTTCA-----CTTCTTGTTGATAATCAGTTGGAGTTCCTCTATAATGTTTGCAGATTTGCATTGCATTTGGGACAGCGT-
gi|4 : cTAACCTGCATACAGCAGCCAGTCTATGTACCTTGACTGTGACTCC-TGCTGCAATTGGCGTCCATGTCCGTTGGGACACATTATGATATTTGATGCACGTAGTAATCTTTTAGCACGTTTT--T---AAAAA-GTTTT----AAT-GTTCGTCTTATTTTTAAA--AGAA-TA--------CTTT--AACAAAA----------------AATGTAATTTATTTAAGA----------------ATATCAATATT-------------T-----GG-attgta
gi|5 : aagcaaaatagaggtggttctatatagggttgtaagaaattggcatttatcagcttaatttatgtgcattgtttatattaaatcatattctgttgttgtttggtgtttagaatcgctttcaacaacagtattctaagcactgccacactggagtatcaagcctcagacATACCTGCCAAAATGGGACTAAACAAGTTTTTTTTCT-----CTTCTTGTTGATAATCAATCTGAACTCCTCTATATTGTTCTCAGATTTGCATTGCATTTGAGCCTGCAT-TTTAT-ACCCAGCAATTC-ATGTAAGACTGAATCGAAGATGGAAACCAGCATTCCA--------------------ACAA-------AATGGTTGTCAAATGCAGAAGTGTTCACAT---TCTC-TAAACTGGAAGTAAAGTGAACAAGTCAT----TGGAGTTT
gi|6 : TTTTAACATGTTTT--T---AAAAT-GTTTT----CAT-GTTTGTCTTATATTAAAAGAA--A-TA--------CTTA--AATAAAATCATGTAGTTTATATAA---------------GA----------------ATTTCAATATT-------------TTGTCCAGAGTTCAACCGG-------------TATGATTTTAATTGTTTACAATCAGGCATTCAAGATTGAG---GTTAACGCAGACTTACTAAAACACTTTCCATGCATAAATAAACATCGAAGTCTGAACAAGCATTATGACgcctctatccatgttccaaatatcattggatttacttcagtatatttagttatgttccagaaagaaattctgatagatgcatac
gi|7 : ATTTGA---TGC-T-C---T-GC------ATTCAATGTAAAATTGACACGCAGATGACAACCTGCATTCCATT------------------TAAAGCGGTGCAATGATTGTCAAATGCAATCGTGATCATTTTTCTTTC-TAAA--GGACGTACAGTGAACCAGT-AT----TGGAGCT
gi|8 : tgatgtcaatcaacatttctccgtgaattcctcagagaattaccttaaggctcggttcaACTGTGACTCT-TGCTGCAAAGAGCGGCCATT--------------GAA-AACATTGTATACATGTAA-ACTCTTTTAATTTATATG--TTTTGTAAA-GTCTT----AAAAGTTATTTTTCTTTTCAAA--G--A-TA--------CTTT--AATAAAA----------------AT--------------GA----------------ATGGAAGTATT-------------T-----
gi|9 : CATTACATTTGGTGCTGCG--------AC------ATTCAATGTAAGATTGACACAGAGCTGGAAACAAGCATTCC--T------------------ACA------------------AAATGCAGGTGTGTTAACTT---TTTC-CAAACAGGAAtctataaagtatttatatttaaaagaatgacaatacttaggcgggacattcagctcat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GAAGTTTTAATACTTTAATAAAAATGAATAGAAGTCTGAAGTTGTTTTTAATTGAAAAGAATGTTGATATAAAGGCAGAAACTCAGCCTGTA
Unaligned ( gi|13 ): TTTTAAAAAAAAATACTTTAATAAAAAATGTATTTTTTTTAAGAATGTCAATATTTGG