lowQualScore : 222 11 1 11
lowQualScore : 2 777 444 2 7 888 2 2 2 4 2 33 88 2 55 2 1 88 55
lowQualScore : . ... ... . . ... . . . . . .. .. . .. . . .. ..
lowQualScore : 4 999 111 5 0 666 5 4 4 7 4 55 88 4 66 4 8 55 44
consensus : ATAAGAAACAACTCTTCCTGG-AC-A-TAA---ACATAATTTTG-TGGTA--TTT-TTTT-ACTATTTT-AG-GGG-A--A--A-C--TT-T-TCAT-TTT-AGTCCATTTCTGAAGTAAAGAATAGTA
Reference ( gi|4 ) : ATAAGAAACAACTCTTCCTGG-AC---TAA---ACATAATTTTG-TGTTA--TTT-TTTT-ACTATTTT-AG-GGG-A--A--A-C--TT-T-TCAC-TTG-AGTCCATTTCTGAAGTAAAGAATAGTA
gi|6 : ATAAGAAACAACTCTTCATGG-TC---TAA---ACATAATTTTG-TGTTA--TTT-TTTT-ACTATTTT-AT-GGG-A--A--A-C--TT-T-TCAT-TTT-TGTCCATTTCTGAAGTAAAGAATAATA
gi|3 : ATAAGAAACAAATCTTCCTGG-AC---TAA---ACATAATTTTG-TGTTATTTTT-TTTT-ACTATTTT-AT-GAG-A--A--A-C--TT-T-CCAT-TTT-ATTCCATTTCTGAAGAAAATAATAGTA
gi|1 : ATTAGAAACAACTCTTCCTGA-AC---TAA---ACATAATTTTG-TGGTAT-TTT-TTTT-ACTATTTT-TGTGGG-A--A--A-CTTTT-T-TCAG-TTT-AGTCCATTTCTGAAGTAATGAATAG
gi|8 : ATTAGAAACAACTCTTCCTGGAACAA-TAA---ACATAATTTTGACG-TA---TT-TGGT-AATATTTT-AG-GGG-G--AT-A-A--TT-T-TCTCATTGTTGTTCATTTCTGAAGAAAAGa
gi|19 : ATAAGAAACAACTCTTTCTGG-AT---TAA---ACGT
gi|5 : aaatTAAGAAACAACTCTTCCTGG-AC---TAG---ACATAATTTTG-TTTTA--TGT-TTTT-ACTATTTT-AG-GGGAA--A--A-T--TT-T-TCAT-TTT-AGTCCATTTCTTATGTAAAGAATAGTA
gi|12 : AAGAAACAACTCTTCTTGG-TC---TAA---ACATAATTTTG-TGTTA--TTT-TTTT-ACTATTTT-AT-GGG-A--A--A-C---T-T-TCAT-TTT-TGTCCATTTCTGAAGTAAAGAATAGT
gi|16 : AGAAACAACTCTTCCTGG-AC---CAATTAACATAATTTTG-TGGTA----T-TTTT-ACTATTTT-AG-GGG-AT-A--A-TG-CT-C-TCAT-TTT-AGTCCATTTCTGAAAT
gi|17 : tAAACAACACTTCCTGG-TC---TAA---ACATAAATTTG-TGTTA--TTT-TTTT-ACTATTTT-AT-GGG-A--A--A-C--TT-T-TCAA-TTT-TGTCCATTTCTGAAGCAAg
gi|2 : AAACAACTCTTCCTGG-ACCAATAA---ACATAATTTTG-AGGTA--TAT-TTT--ACTATTTTTAG-GGG-AT-A--A-C--TT-TCTCAT-TTT--GTCCATTTCTGAAGTAAATAATAGTAga
gi|15 : ttcAACAACTCTTCCTGG-AC---TAA---ACATAATTTTG-TGTTAG-TTTATTTT-ACTATTTT-AT-GGG-A--A--A-C--TT-T-TCAT-TTT-AGTCCATTTCTGAAGTAAAAAATA
gi|7 : AACAATTCTTCCTGG-ACCAATAA---ACATAATTTTG-AGGTA--TTT-TTT--ACTATTTT-AGTGGG-AT-A--A-T--TT-TCTCAT-TTT-AGTCCATTTCTGAAGTAAAGAATAGTt
gi|9 : tgAACTCTTCCTGG-AC---TAA---ACATAATGTTG-TGGTA---TT-TTTT-ACTATTTT-AG-GGG-G--A--ATC--TT-T-TCAT-TTT-AGTCCATTTCTGAAGTAAAGAATAGTA
gi|11 : attagaAACTCTTCCTGG-ACCAATAA---ACATAATTTTG-TGCTA--TTT-TTTT-ACTATTTT-AG-GGG-G--ATGA-T--TTAC-TCAT-TTT-AGTCCATTTTTGAAGTAAAGAATAGT
gi|10 : AACTCTTCCTGG-ACCAATAA---ACATAATTTTG-TGGTA--TTT-TTTTTACTATCTT-AG-GGG-G--ATAA-T--TT-TCTCAT-TTT-AGTCCATTTCAGAAGTAAAGAA
gi|14 : aaACTCTTCCTGG-ACCAATAA---ACATAATTTTG-TCGTA--TTT-TTTT-ACTATCTT-AG-GGG-GATA--A-C--TT-TCTCAT-TTT-AGTTCATTTCTAAAGTAAAGAAaa
gi|13 : CTCTTCCTGG-ACAAATAA---ACATAATTTTG-TGGTA--TTT-TTTT-ACTAACTT-AG-GGG-GATA--A-T--TT-TCTCAT-TTT-AGTCCATTTCTGAAGTAAAGAAaat
gi|18 : gT-GCTATTTT-TT-TGG-A--A--A-C--TC-T-TCAT-TTA-AGTCCATTTCTGAAGTAAAGAATAGTAaata
Alignments
lowQualScore : 44444 11 1
lowQualScore : 2 11111 1 2 2 33 4 2 4 2 55 66 2 2 2 3 33
lowQualScore : . ..... . . . .. . . . . .. .. . . . . ..
lowQualScore : 2 88888 8 4 4 22 4 2 4 2 88 11 2 2 2 3 11
consensus : ATAAGAAACAACTCTTCCTGG-AC--A--TAAACATAATTTTGTGGTA-TTT-T--TTT-ACTATTTT-AG-GGG-A--A--A-C-TT-T-T--CATTTTAGTCCATTTCTGAAGTAAAGAATAGTA
Reference ( family-650 ) : ATAAGAAACAACTCTTCCTGG-AC--A--TAAACATAATTTTGTGGTA-TTT-T--TTT-ACTATTTT-AG-GGG-A--A--A-C-TT-T-T--CATTTTAGTCCATTTCTGAAGTAAAGAATAGTA
gi|1 : ATTAGAAACAACTCTTCCTGA-AC-----TAAACATAATTTTGTGGTA-TTT-T--TTTTACTATTTT-TGTGGG-A--A--A-C-TT-T-TTTCAGTTTAGTCCATTTCTGAAGTAATGAATAG
gi|10 : AACTCTTCCTGG-ACCAA--TAAACATAATTTTGTGGTA-TTT-T--TTTTACTATCTT-AG-GGG-G--ATAA-T-TT-TCT--CATTTTAGTCCATTTCAGAAGTAAAGAAa
gi|11 : aaAACTCTTCCTGG-ACCAA--TAAACATAATTTTGTGCTA-TTT-T--TTT-ACTATTTT-AG-GGG-G--ATGA-T-TTAC-T--CATTTTAGTCCATTTTTGAAGTAAAGAATAGTaa
gi|12 : AAGAAACAACTCTTCTTGG-TC-----TAAACATAATTTTGTGTTA-TTT-T--TTT-ACTATTTT-AT-GGG-A--A--A-C--T-T-T--CATTTTTGTCCATTTCTGAAGTAAAGAATAGT
gi|13 : CTCTTCCTGG-AC--AAATAAACATAATTTTGTGGTA-TTT-T--TTT-ACTAACTT-AG-GGG-GATA--A-T-TT-TCT--CATTTTAGTCCATTTCTGAAGTAAAGAA
gi|14 : gACTCTTCCTGG-ACCAA--TAAACATAATTTTGTCGTA-TTT-T--TTT-ACTATCTT-AG-GGG-GATA--A-C-TT-TCT--CATTTTAGTTCATTTCTAAAGTAAAGAAaata
gi|15 : AACAACTCTTCCTGG-AC-----TAAACATAATTTTGTGTTAGTTTAT--TTT-ACTATTTT-AT-GGG-A--A--A-C-TT-T-T--CATTTTAGTCCATTTCTGAAGTAAAAAATAaat
gi|16 : AGAAACAACTCTTCCTGG-ACCAA--TTAACATAATTTTGTGGTA---T-T--TTT-ACTATTTT-AG-GGG-AT-A--A-TGCT-C-T--CATTTTAGTCCATTTCTGAAATt
gi|17 : tAAACAACACTTCCTGG-TC-----TAAACATAAATTTGTGTTA-TTT-T--TTT-ACTATTTT-AT-GGG-A--A--A-C-TT-T-T--CAATTTTGTCCATTTCTGAAGCAAg
gi|18 : T-GCTATTTT-TT-TGG-A--A--A-C-TC-T-T--CATTTAAGTCCATTTCTGAAGTAAAGAATAGTAga
gi|19 : ATAAGAAACAACTCTTTCTGG-AT-----TAAACGTtt
gi|2 : aaatAAACAACTCTTCCTGG-ACCAA--TAAACATAATTTTGAGGTA-TAT-T--TT--ACTATTTTTAG-GGG-AT-A--A-C-TT-TCT--CATTTT-GTCCATTTCTGAAGTAAATAATAGTA
gi|3 : ttcATAAGAAACAAATCTTCCTGG-AC-----TAAACATAATTTTGTGTTA-TTT-TTTTTT-ACTATTTT-AT-GAG-A--A--A-C-TT-T-C--CATTTTATTCCATTTCTGAAGAAAATAATAGTA
gi|4 : ATAAGAAACAACTCTTCCTGG-AC-----TAAACATAATTTTGTGTTA-TTT-T--TTT-ACTATTTT-AG-GGG-A--A--A-C-TT-T-T--CACTTGAGTCCATTTCTGAAGTAAAGAATAGTA
gi|5 : TAAGAAACAACTCTTCCTGG-AC-----TAGACATAATTTTGTTTTA-TGT-T--TTT-ACTATTTT-AG-GGGAA--A--A-T-TT-T-T--CATTTTAGTCCATTTCTTATGTAAAGAATAGTA
gi|6 : ATAAGAAACAACTCTTCATGG-TC-----TAAACATAATTTTGTGTTA-TTT-T--TTT-ACTATTTT-AT-GGG-A--A--A-C-TT-T-T--CATTTTTGTCCATTTCTGAAGTAAAGAATAATA
gi|7 : AACAATTCTTCCTGG-ACCAA--TAAACATAATTTTGAGGTA-TTT-T--TT--ACTATTTT-AGTGGG-AT-A--A-T-TT-TCT--CATTTTAGTCCATTTCTGAAGTAAAGAATAGT
gi|8 : tgATTAGAAACAACTCTTCCTGGAACA-A--TAAACATAATTTTGACGTA--TT-T--GGT-AATATTTT-AG-GGG-GATA--A-T-TT-TCT--CATTGTTGTTCATTTCTGAAGAAAAG
gi|9 : AACTCTTCCTGG-AC-----TAAACATAATGTTGTGGTA-TTT-T--TT--ACTATTTT-AG-GGG-G--A--ATC-TT-T-T--CATTTTAGTCCATTTCTGAAGTAAAGAATAGTA
Alignments
lowQualScore : 44444 11 1
lowQualScore : 2 11111 1 2 2 33 4 2 4 2 55 66 2 2 2 3 33
lowQualScore : . ..... . . . .. . . . . .. .. . . . . ..
lowQualScore : 2 88888 8 4 4 22 4 2 4 2 88 11 2 2 2 3 11
consensus : ATAAGAAACAACTCTTCCTGG-AC--A--TAAACATAATTTTGTGGTA-TTT-T--TTT-ACTATTTT-AG-GGG-A--A--A-C-TT-T-T--CATTTTAGTCCATTTCTGAAGTAAAGAATAGTA
Reference ( family-650 ) : ATAAGAAACAACTCTTCCTGG-AC--A--TAAACATAATTTTGTGGTA-TTT-T--TTT-ACTATTTT-AG-GGG-A--A--A-C-TT-T-T--CATTTTAGTCCATTTCTGAAGTAAAGAATAGTA
gi|1 : ATTAGAAACAACTCTTCCTGA-AC-----TAAACATAATTTTGTGGTA-TTT-T--TTTTACTATTTT-TGTGGG-A--A--A-C-TT-T-TTTCAGTTTAGTCCATTTCTGAAGTAATGAATAG
gi|10 : AACTCTTCCTGG-ACCAA--TAAACATAATTTTGTGGTA-TTT-T--TTTTACTATCTT-AG-GGG-G--ATAA-T-TT-TCT--CATTTTAGTCCATTTCAGAAGTAAAGAAa
gi|11 : aaAACTCTTCCTGG-ACCAA--TAAACATAATTTTGTGCTA-TTT-T--TTT-ACTATTTT-AG-GGG-G--ATGA-T-TTAC-T--CATTTTAGTCCATTTTTGAAGTAAAGAATAGTaa
gi|12 : AAGAAACAACTCTTCTTGG-TC-----TAAACATAATTTTGTGTTA-TTT-T--TTT-ACTATTTT-AT-GGG-A--A--A-C--T-T-T--CATTTTTGTCCATTTCTGAAGTAAAGAATAGT
gi|13 : CTCTTCCTGG-AC--AAATAAACATAATTTTGTGGTA-TTT-T--TTT-ACTAACTT-AG-GGG-GATA--A-T-TT-TCT--CATTTTAGTCCATTTCTGAAGTAAAGAA
gi|14 : gACTCTTCCTGG-ACCAA--TAAACATAATTTTGTCGTA-TTT-T--TTT-ACTATCTT-AG-GGG-GATA--A-C-TT-TCT--CATTTTAGTTCATTTCTAAAGTAAAGAAaata
gi|15 : AACAACTCTTCCTGG-AC-----TAAACATAATTTTGTGTTAGTTTAT--TTT-ACTATTTT-AT-GGG-A--A--A-C-TT-T-T--CATTTTAGTCCATTTCTGAAGTAAAAAATAaat
gi|16 : AGAAACAACTCTTCCTGG-ACCAA--TTAACATAATTTTGTGGTA---T-T--TTT-ACTATTTT-AG-GGG-AT-A--A-TGCT-C-T--CATTTTAGTCCATTTCTGAAATt
gi|17 : tAAACAACACTTCCTGG-TC-----TAAACATAAATTTGTGTTA-TTT-T--TTT-ACTATTTT-AT-GGG-A--A--A-C-TT-T-T--CAATTTTGTCCATTTCTGAAGCAAg
gi|18 : T-GCTATTTT-TT-TGG-A--A--A-C-TC-T-T--CATTTAAGTCCATTTCTGAAGTAAAGAATAGTAga
gi|19 : ATAAGAAACAACTCTTTCTGG-AT-----TAAACGTtt
gi|2 : aaatAAACAACTCTTCCTGG-ACCAA--TAAACATAATTTTGAGGTA-TAT-T--TT--ACTATTTTTAG-GGG-AT-A--A-C-TT-TCT--CATTTT-GTCCATTTCTGAAGTAAATAATAGTA
gi|3 : ttcATAAGAAACAAATCTTCCTGG-AC-----TAAACATAATTTTGTGTTA-TTT-TTTTTT-ACTATTTT-AT-GAG-A--A--A-C-TT-T-C--CATTTTATTCCATTTCTGAAGAAAATAATAGTA
gi|4 : ATAAGAAACAACTCTTCCTGG-AC-----TAAACATAATTTTGTGTTA-TTT-T--TTT-ACTATTTT-AG-GGG-A--A--A-C-TT-T-T--CACTTGAGTCCATTTCTGAAGTAAAGAATAGTA
gi|5 : TAAGAAACAACTCTTCCTGG-AC-----TAGACATAATTTTGTTTTA-TGT-T--TTT-ACTATTTT-AG-GGGAA--A--A-T-TT-T-T--CATTTTAGTCCATTTCTTATGTAAAGAATAGTA
gi|6 : ATAAGAAACAACTCTTCATGG-TC-----TAAACATAATTTTGTGTTA-TTT-T--TTT-ACTATTTT-AT-GGG-A--A--A-C-TT-T-T--CATTTTTGTCCATTTCTGAAGTAAAGAATAATA
gi|7 : AACAATTCTTCCTGG-ACCAA--TAAACATAATTTTGAGGTA-TTT-T--TT--ACTATTTT-AGTGGG-AT-A--A-T-TT-TCT--CATTTTAGTCCATTTCTGAAGTAAAGAATAGT
gi|8 : tgATTAGAAACAACTCTTCCTGGAACA-A--TAAACATAATTTTGACGTA--TT-T--GGT-AATATTTT-AG-GGG-GATA--A-T-TT-TCT--CATTGTTGTTCATTTCTGAAGAAAAG
gi|9 : AACTCTTCCTGG-AC-----TAAACATAATGTTGTGGTA-TTT-T--TT--ACTATTTT-AG-GGG-G--A--ATC-TT-T-T--CATTTTAGTCCATTTCTGAAGTAAAGAATAGTA
blockSeqs : A CAA G G A TT T T T A AT TA T G A C .
blockSeqs : . CAA C . . . . . . . AT TG . . . C .
blockSeqs : . AAA T . . . . . . . AT . . . . C .
blockSeqs : . CAA G . . . . . . . T . . . . C .
blockSeqs : . CAA G . . . . . . . T . . . . C .
blockSeqs : . CAA T . . . . . . . T . . . . C .
blockSeqs : . CAA G . . . . . . . . . . . . . .
blockSeqs : . AA T . . . . . . . . . . . . . .
blockSeqs : . . G . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . .
blockSeqs : . . G . . . . . . . . . . . . . .
blockSeqs : . . G . . . . . . . . . . . . . .
blockSeqs : . . G . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqCons : **
originalCons : ATAAGAAACAACTCTTCCTGG-AC--A--TAAACATAATTTTGTGGTA-TTT-T--TTT-ACTATTTT-AG-GGG-A--A--A-C-TT-T-T--CATTTTAGTCCATTTCTGAAGTAAAGAATAGTA
finalCons : ATAAGAAACAACTCTTCCTGG-AC--A--TAAACATAATTTTGTGGTA-TTT-T--TTT-ACTATTTT-AG-GGG-A--A--A-C-TT-T-T--CATTTTAGTCCATTTCTGAAGTAAAGAATAGTA
Alignments
lowQualScore : 44444 11 1
lowQualScore : 2 11111 1 2 2 33 4 2 4 2 55 66 2 2 2 3 33
lowQualScore : . ..... . . . .. . . . . .. .. . . . . ..
lowQualScore : 2 88888 8 4 4 22 4 2 4 2 88 11 2 2 2 3 11
consensus : ATAAGAAACAACTCTTCCTGG-AC--A--TAAACATAATTTTGTGGTA-TTT-T--TTT-ACTATTTT-AG-GGG-A--A--A-C-TT-T-T--CATTTTAGTCCATTTCTGAAGTAAAGAATAGTA
Reference ( family-650 ) : ATAAGAAACAACTCTTCCTGG-AC--A--TAAACATAATTTTGTGGTA-TTT-T--TTT-ACTATTTT-AG-GGG-A--A--A-C-TT-T-T--CATTTTAGTCCATTTCTGAAGTAAAGAATAGTA
gi|1 : ATTAGAAACAACTCTTCCTGA-AC-----TAAACATAATTTTGTGGTA-TTT-T--TTTTACTATTTT-TGTGGG-A--A--A-C-TT-T-TTTCAGTTTAGTCCATTTCTGAAGTAATGAATAG
gi|10 : AACTCTTCCTGG-ACCAA--TAAACATAATTTTGTGGTA-TTT-T--TTTTACTATCTT-AG-GGG-G--ATAA-T-TT-TCT--CATTTTAGTCCATTTCAGAAGTAAAGAAa
gi|11 : aaAACTCTTCCTGG-ACCAA--TAAACATAATTTTGTGCTA-TTT-T--TTT-ACTATTTT-AG-GGG-G--ATGA-T-TTAC-T--CATTTTAGTCCATTTTTGAAGTAAAGAATAGTaa
gi|12 : AAGAAACAACTCTTCTTGG-TC-----TAAACATAATTTTGTGTTA-TTT-T--TTT-ACTATTTT-AT-GGG-A--A--A-C--T-T-T--CATTTTTGTCCATTTCTGAAGTAAAGAATAGT
gi|13 : CTCTTCCTGG-AC--AAATAAACATAATTTTGTGGTA-TTT-T--TTT-ACTAACTT-AG-GGG-GATA--A-T-TT-TCT--CATTTTAGTCCATTTCTGAAGTAAAGAA
gi|14 : gACTCTTCCTGG-ACCAA--TAAACATAATTTTGTCGTA-TTT-T--TTT-ACTATCTT-AG-GGG-GATA--A-C-TT-TCT--CATTTTAGTTCATTTCTAAAGTAAAGAAaata
gi|15 : AACAACTCTTCCTGG-AC-----TAAACATAATTTTGTGTTAGTTTAT--TTT-ACTATTTT-AT-GGG-A--A--A-C-TT-T-T--CATTTTAGTCCATTTCTGAAGTAAAAAATAaat
gi|16 : AGAAACAACTCTTCCTGG-ACCAA--TTAACATAATTTTGTGGTA---T-T--TTT-ACTATTTT-AG-GGG-AT-A--A-TGCT-C-T--CATTTTAGTCCATTTCTGAAATt
gi|17 : tAAACAACACTTCCTGG-TC-----TAAACATAAATTTGTGTTA-TTT-T--TTT-ACTATTTT-AT-GGG-A--A--A-C-TT-T-T--CAATTTTGTCCATTTCTGAAGCAAg
gi|18 : T-GCTATTTT-TT-TGG-A--A--A-C-TC-T-T--CATTTAAGTCCATTTCTGAAGTAAAGAATAGTAga
gi|19 : ATAAGAAACAACTCTTTCTGG-AT-----TAAACGTtt
gi|2 : aaatAAACAACTCTTCCTGG-ACCAA--TAAACATAATTTTGAGGTA-TAT-T--TT--ACTATTTTTAG-GGG-AT-A--A-C-TT-TCT--CATTTT-GTCCATTTCTGAAGTAAATAATAGTA
gi|3 : ttcATAAGAAACAAATCTTCCTGG-AC-----TAAACATAATTTTGTGTTA-TTT-TTTTTT-ACTATTTT-AT-GAG-A--A--A-C-TT-T-C--CATTTTATTCCATTTCTGAAGAAAATAATAGTA
gi|4 : ATAAGAAACAACTCTTCCTGG-AC-----TAAACATAATTTTGTGTTA-TTT-T--TTT-ACTATTTT-AG-GGG-A--A--A-C-TT-T-T--CACTTGAGTCCATTTCTGAAGTAAAGAATAGTA
gi|5 : TAAGAAACAACTCTTCCTGG-AC-----TAGACATAATTTTGTTTTA-TGT-T--TTT-ACTATTTT-AG-GGGAA--A--A-T-TT-T-T--CATTTTAGTCCATTTCTTATGTAAAGAATAGTA
gi|6 : ATAAGAAACAACTCTTCATGG-TC-----TAAACATAATTTTGTGTTA-TTT-T--TTT-ACTATTTT-AT-GGG-A--A--A-C-TT-T-T--CATTTTTGTCCATTTCTGAAGTAAAGAATAATA
gi|7 : AACAATTCTTCCTGG-ACCAA--TAAACATAATTTTGAGGTA-TTT-T--TT--ACTATTTT-AGTGGG-AT-A--A-T-TT-TCT--CATTTTAGTCCATTTCTGAAGTAAAGAATAGT
gi|8 : tgATTAGAAACAACTCTTCCTGGAACA-A--TAAACATAATTTTGACGTA--TT-T--GGT-AATATTTT-AG-GGG-GATA--A-T-TT-TCT--CATTGTTGTTCATTTCTGAAGAAAAG
gi|9 : AACTCTTCCTGG-AC-----TAAACATAATGTTGTGGTA-TTT-T--TT--ACTATTTT-AG-GGG-G--A--ATC-TT-T-T--CATTTTAGTCCATTTCTGAAGTAAAGAATAGTA