lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111
lowQualScore : 22222222222 4444444444444444444444444 1111111111 11111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111111 33333333 2222222222222 1 1 44444444444444444 1 33333333333333 333 222222 1111111 11111111111 333333333 111 1111 44444444444 4444444444 22222 777777777777777 2222222222 1 1 1 444444 111 1 11 1111 1 33333333 222222222222222 2222 2222 4444 7777777777777 1 1 11 1 555555555 3333 1 4444444444444 111111 1 111111111111111111111111111
lowQualScore : 3 5 3 3 3 55 3 4 33333333333 3 3333333333333333333333333 6 3 7777777777 4 00000 4 44 777 7777 3 55 666 5 8888 4 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 4 6 99999999 44444444 5 6666 5 5555555555555 4 55 1 999 6 4 11111111111111111 4 3 7 66 11111111111111 5 0 111 222222 3 1 1111111 6 1 3 77777777777 888888888 2 333 0 4444 6 0 6 99 6 77 55555555555 6 99 6 9 6 4 99 3 7 1 6666666666 4 2 7 0 9 22222 3 3 6 666666666666666 2 3 1 3 3 3 2 4444444444 2 0 3 0 2 4 4 5 666666 888 3 88 7 6666 3 7 55555555 999999999999999 7777 2222 2222 55 0000000000000 3 0 3 7 7 3 33 0 444444444 1111 0 6666666666666 777777 4 5 6 666666666666666666666666666 6
lowQualScore : . . . . . .. . . ........... . ......................... . . .......... . ..... . .. ... .... . .. ... . .... . ................................................................................................................................................................................................................................ . . . ........ ........ . .... . ............. . .. . ... . . ................. . . . .. .............. . . ... ...... . . ....... . . . ........... ......... . ... . .... . . . .. . .. ........... . .. . . . . .. . . . .......... . . . . . ..... . . . ............... . . . . . . . .......... . . . . . . . . ...... ... . .. . .... . . ........ ............... .... .... .... .. ............. . . . . . . .. . ......... .... . ............. ...... . . . ........................... .
lowQualScore : 6 5 6 6 6 00 6 6 44444444444 1 1111111111111111111111111 5 6 3333333333 0 00000 0 55 000 7777 6 00 444 1 5555 0 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 4 2 22222222 77777777 6 9999 6 8888888888888 0 55 8 444 0 0 55555555555555555 0 7 8 00 66666666666666 7 1 444 111111 3 7 5555555 7 0 0 00000000000 555555555 5 222 8 2222 5 8 4 22 0 00 88888888888 3 22 7 8 7 8 22 5 8 7 2222222222 8 5 8 3 2 00000 7 2 7 222222222222222 5 8 4 2 2 0 5 5555555555 2 0 0 0 5 0 0 0 000000 777 3 00 3 3333 3 3 00000000 555555555555555 5555 5555 5555 55 5555555555555 3 7 3 3 3 0 00 5 555555555 0000 5 0000000000000 000000 0 5 0 000000000000000000000000000 0
consensus : TTTTTTTA-ATAT-TT-T-AT--TCAA-TNATT-------T-G-TGTGTACATAT-CT-----------AAAAT--A-A-CNGAA-C---------ATA-ACAT-----AAT-T-GTA---CAT----T-GTTA--CATA---TGTAATA----TAT-AT--A------AT-CTGCT-----------------A--T--TT-----ATATA---GC-AG---------GAATGTT--TT--A----T-CT-A-----AT---TA--T----------CGT----T-TATNA-------------AT-ATC----T-----A--A---ATT------------TT--GTC-A--TTA-----ANA-------ACTTGT----TAAAGAATA-CNT----TG--AACTAC-------ATTCCACCTTGCTTTTATATTATTAGATTTTTC-C-AAGGGGT------ACA----TAT-A--TGTTGAAAACAATTCAAT-A-TTTCT-ATAAC----------N------TTTT-ACTTGTTCGATAAAAACTGAATAAATTGGGAGACA--TTTT----T--CAATTTGCAAGAAT-AAATGTAC---TTTT------ATAAATAAGCAATAAAACATATAAAAT-ACAGTCAATACATGACGAGCATTTAATG-TC-AAAATAATGTTCTCTCGTTTTA--TNTCTTCTGAAATATTACATTTGTCCTTTAACTG--GCCATAAAGCATGATAAGT-TATTTTT--GAGTACATA--CAGTCATAGAACAGATGC-GATATAGTTTCTTTT-GAGTTGTTACAAAAAGT--GCACAATTCGGTTTCTGACAT-CCA-A-CGTATATAGTTTTGCATTAGTGAAAATAATTCTA--TGAANAATTT-TGAATTGCA-----A-GACTG---GANGTGTGTATCATTTATGAATATAAATGGTTGTTTAT-ACGAAATATTCCAGTCTGTAATGTCCAATACACTA-CCNA-CGTCCCTTTCCCACTTTTGTTGTGAGGTACTGGGGCATTCAACAAAACATTTCAANAANTGAGGGTAGAAAGATTGATT---TA-TTTTTTTG-C-ATTTTTAG-TTTGGAAATATTTTTNTT-TTTTTGGATACTCTATTTTTTTA-CA-TTTCTATACATTTTTTCCAATTAACTGGAATTGNAGAATGTCAGNNNCAAACAATTACTTTNNACAGTAGGGTCTATAA-TATAT-ATCTCATATTTTNCNNATNAACTGAAATTNAAGAATGCCAGAGGCGGACANTTATTNNCAACNATANNGTCTNTAANATATANTCCCTTATTACACATG--TTTAT-AAACACATTATTA-----ATCTTTAT
Reference ( gi|1 ) : TTTTTTTA-ACAT-TT-T-AT--TCAA-TAATT-------T-G-TGTGTACACAT-CT-----------AAAAC--A-A-CTGAA-C---------GTA-ACAT-----AAT-T-GTA---CAT----T-GTTA--CATA---TGTAATA----TAT-AT--A------AT-CTGCT-----------------A--T--TT-----ATATA---AT-AT---------GAATGTT--TT--A----T-CT-G-----AT---TA--T----------CGT----T-TATAA-------------AT-ATC----T-----A--A---ATT------------TT--GTC-A--TTA-----AAA-------ACTTGT----TAAAGAATA-CAT----TT--AACTAG-------ATTCCACCTTGCTTTTATATTGTTAGATTTTTT-C-AAGAGGT------ACT----TAT-A--TGTTGAAAACAATTCTAT-A-TT-CT-ATAAC----------A------TTTT-ACTTGTTCGATACAAACTGAATAAATTGAGAGACA--TTTT----T--CAATTTGCAAGAAT-AAATATAC---TTTT------ATAAATGAGCAATAAAACATATAAAAT-ACAATCAATACATGGCGAGCACTTAATG-TCCAACACAATGTTCTCTCGCTTTA--TTTCTTCTGAAATATTACATTTGTCCTTTAACTG--GCTATAAAGCATAATAAGTTCATTTTTT-GAGTGCATA--CAGTCATAGAACAAATGC-AATATAGTTTCTTTT-GAGTTGTTACAAAAGGT--ACACAATTTGGTTTCTGACATACCACA-CGTATACAATTTTGCATTAGTAAAAATAATTATC--TGAAGAATTT-TGAATTGCA-----A-----G---GAGGTGTGTATCATTTATGAATATAAATGGTTGTTTAT-ACAAAATAATCCAGTCTGTAATGTCCAATACATTA-CCAA-CGTCCCTTTCCCACTTTTGTTGTGAAGTACTGGGGCATTCAACAAAATATTTCAAAAATTGAGTGTAGAAAGATTGATT---T--TTTTTTTG-CAATTTTTAG-TTCGGAAATATTTTTCAT-TTTTAGGATACTCTATTTTTTTACTATTTTTTATACATCTTTTCCAATTAGCTGGAATTGCCG-ATATCAACCCCAAA----TACTTTACACAA-AG-------AA-TACAT-ATCTCATATTTTTCGCATCAACT----TTC--GAATGTCAGAAGCAAACAGTTATCATCCGCTATATCGTTTACGAAGTATATTCCCTTGTTACACATAGCCTTATAAAAGACAGTATCATAATTATTTTTATA
gi|2 : TTTTTGTA------TT-T-AT--TCAA-TTATT-------TTG-TGTGTACATGT--T-----------AAGAT--ATA-CAGAT-T---------ATA-ATAT-----ATT-T-ATA---CAT----T-GTTAAATATA---TGTAATA----TAT-AT--C------CT--TGTTCGATC------------A--T--TTGAAATATATG---AT-TT---------ACATATT--TT--AGGT-T-GT-A-----AC---TA--T----------CAT----CATATAATAATTGCTTTCTTAT-A-C----T-----AGTA---GTT------------AT--TTT-A--CTA-----ATA-------ACTT-T----CAGAG--TA-CCT----T--------G-------ATTCCATCTTGCTTTTATATTTTTAGACTTTTC-C-AAGTGGT------ACA----TAT-A--TGTTGACAACGATTCAAT-A-TTTCT-ATAA-----------A------TTTT-ACTTGTTCAATAAAAATTGAATAAATTG---------------------------CAAGAGT-AAATGTAC---TTTTTTTTTTATAAACAAACAATAAAATATCAAGAAT-GCAGTCAATTCATGAAGAGCATTTTGTGCTCAAAAATAATGTTCTCTAGTTTGA--TATCTTCTGAAATATTACATTTGTCCTTTAATTG--GCTAT-AAGCGTGGTAAGTATATT----------------CAGTCATAAAACGGATGC-GAAATAGTTTCTTTTCGATGTATTACAAAAAGT--ACACAATTTGGATTCTGACAT-TCAAATTGTATATAGTTTTGTATTGGTGAAAATAATTCTA--TAAACAA-AT-TGAATTGCA-----AAGATTG---GACGTGTGTATCTCTTTCGGAAAT-AATGGTTGTTTAT-ACGAAATATTCCAATCTGTAATGTCCAATACACTA-CCCA-CGTCCCTTTCCTACTTTTGTGATGAGGTACTTGGGCATTCAACAAAACATTTCAATAAATGAAGATAGAAAGATTGATT---TA-CTTGTTTGACCATTGTTAG-TTTAGAAATATTTCGATT-TTTTGGGATACTC-----TTTTA--------TATACATTTTTTCCAATTAACTGAAATTGAAGAATGTCAGAGGCAAACAATTATTTTCAACAATAGGGTCTATAA-TATATAATCTCTTAT
gi|4 : tTCTTTTTG-A--T-TT-T-AT---CAG-TATTTAGTTGCAT-G-TGTTTACATA--CTCATAGCAAAAAAAAAT--A-AATTGAA-T---------GCA-ACAT-----CAT-A-CTA---CAC----T-GTTA--CATA---TGTAATA----TAT-AT--A------AT-CTG----------------------T--TC-----ATATA---GTTATT--------GTATTTTAATT--A----T-TT--------T---CA--T----------TAT----T-TAT----------------T-G-C----T-----A--A---ATTG-----------TTA-GTC-G--TTATAATTAAA-------ACAGGT----GGAAGAATAGCTTAAGCTT--AAATAATTATTATATTTCACATTGTTTTTATATTTTCATATTTTAC-T-AAGGGGTGTATCGAGTATAATATTA--TGTTGAAAGTAAATCAAT-A-TTTCT-ATTAT----------A------GTTC-A-TTGGTCTATG-AAACTGAATAAATTTAGAGACA--TTTTAT--T--CAATTTGCAAG--T-AATTATACG--TTTT------ATATATAAGCAA--------------T-ACAAT-------------GTATCTAATG-G--AAAAAAAT--CCTCT-G-TTTAAATGTCTTCTAAAATATTACATGTATCCCTTTACTGTGGCTATTAAGCATGATAAAT--ATATTTTAGAGTACGTA--CAAACATATAACAAATGT-AGTACAGTTTCTTTT-GAGATGTTACCAAAATT--GCACAATTCCATTTCTTACATTTTACA-CGTACATAG--TTG-ATTATT--GAATATTTCTCTATAAAGAATTT-TGAATTACT-----ATAGT-G---GAGGTGCGAAT
gi|6 : cttTTTTTTTAGATAT-TT-TTAT--TCAA-TCATT-------TTG-TGTGTACATAT--T-----------AAGAT--ATA-CAGAA-CATAACAAAAGTATACACGGTTAAATAT-GTAATATATAGGCT-GTT---CATA---AGAAATAAGATTATCAT--AGAAGGAAT-TT-TT-----------------AGGT--TT-----A-ACT---AC-AT------------TGTA--TT--A----T-C--------ATACGTA--T----------CGT----A-TATTA-------------TT-ATC----TTTTTTAT-A---GTT------------AT--GTTGA--TTA-----TAA--------CTT-------AAATAATA-CCT----TG--AACTAC-------ATTCCACCTTTCTTTTATATTATTAGATTTTTC-C-AAGGGGT------ACA----CGT-T--TGTTGAAAATAATTCAAT-ATTT-CT-ATAAC----------C------TTTT-ACTTTTTC-----------AATAAACTGGGAGCCATTTTTT----T--CAATTTTCAAGAATGAAATA-AT---TTTG------ATA
gi|3 : gTTTTTA-ACAT-TT-T-AT--GCAA-TAAGT-------T-G-CGTGTACACAT-CT-----------AAATA--A-A-CTGAA-C---------ATA-ACAT-----AAT-TTGT----CAG----T-GTTA--CATA---TGTAAAA----TAT-AT--A------AT-CTGCTCGAATATAATATATAATA--TCTTT-----ATATA---GT-AG---------GAATGTT--TC--A----T-CT-A-----AT---TA--T----------CAT----T-TTTAA-------------AT-AAC----T-----T--T---ATT------------TT--GTC-A--TTA-----AAATCATA--ACTTGT----TACAGAATA-CAT----TT--AACTAC-------ATTGCATCTTGCTTTTACATTGTTAGATTTGTT-C-AAGGGGT------ACA----TAT-A--TGTTGAAAACAATTCTAT-A-TTTCT-ATAAC----------T------TTTT-ACTTGTTCGATAAAAACTGAATAAATTGGGAGACA--TTTT----TTTCAATTTGCAAGAAT-AAATACAC---TTTTT-----ATAAATGAGCAATAAAACATATAAAAT-ACAATCAATACATGACGAGCACTTAATG-CCCAACATAATGTTCTCTCGCTTTA--TTTCTTCTGAAATATTACATTTGTCCTTTAA-TG--GCTATAAAGCATAATAAGTATATTTTTA-GAGTGCAAA--CAGTCATAGAACAAATAC-AATATAGTCTCTTTT-GAGTTGTTACAAAAGGT--ACACAATTCGATTTCTGACATGCCACA-CGTATACAATTTTGCATTAGTAAAAATAATTCTA--TGAAGATTTT-TGAATTGCA-----AAGACTG---GATGTGTGTATCATTTATGAAAATAAATGGGTGTTTAT-ACAAAATTTTCCAGTCTGTAATGTCCAATACCTTA-CCAA-CGGCCCTTTCCCACTTTTGTTGTGAGGTACTGGGGCATTCAACAAAATATTTCAAAAATTGAGGGTAGAAGCATTGATTTACT--TTTTTTTG-CAAATTTTAG-TTT-GAAATA-TTTTCAT-TTCTTGGATACTTTATTTTTTTA-TATTTTCTATACATTTTTTCCAA
gi|9 : gTTTTTA-ACAT-TG-T-AT--TCAC-TTATT-------T-G-TGT--ACATAT--T-----------AAAAT--A-AACAGAA-C---------ATA-ATAT-----GAT-T-GTA---CAT----T-GTTA--TACC---TGTGATA----TAT-A---A------ATGCTGCTCATAA------------A--T--GC-----ATATATACAT-ACAAATAGAAAGAATGTT--TCGAA----T-CTTA-----AT---TA--TTATTAGGATTCAT----T-GATAC-------------AT-TTCAGCTT-----A--A---ATT------------TA--AT--A--TCT-----ATA-------ACTTGT----TAAATAA---CAT----TTTGAACTAATCATAC-ATTCAAACTTGCATTTATATTATTAGATCTTTA-C-A
gi|19 : gcTTTTTA-ACAT-TT-C-GT--TCAA-TAATT-------T-G-TGTGTACACAT-CT-----------AAATA--A-A-CCCAA-T---------AAA-GGAT-----AAT-T-GTT---CAT----T-GTTA--CATA---TATActtaatgtgtatatacat
gi|11 : ttgTTTTTA-ATAT-GTAT-AT--TCAA-TCATT-------T---TGTGTGCATATACT-----------ATTAT--A-T-TTGGAGC---------ATT-ACAT-----AAT-T-ATA---CAT----TTGTAA--TATAGAGTCTAAT-----TAT-AGGAA------AT-ATATG-----------------A--T--TT-----ACATA---GC-AG---------GAATGCTGTTT--ACAGTT-GT-A-----AC---TACAT----------CGTAGTAT-CATAC-------------AC-ATA----T-----A--A---ATTGCTTTCGTATAGTT--GT--G--TTACTT--ACA-------ACTA-------AAAGAATA-CCT----GA--AACTAC-------AATCCACCTTGCATTTATATTATTCGATTTTTT---AAGg
gi|7 : ttgTTTA-ATATGTT-T-AT--TAAA-TCATT-------TTG-TGTGTATATAT--T-----------AAAAT--ATA-CATAA-C---------ATA-ACAT-----AAT-C-ATG---CAT----T-GTAA--CATA---TTTAATA----TAT-A---A------AT-AAGAA-----------------A--TA-TG-----ATATA----C-AG---------GAATGTT--TT--AAGT-T-TT-A-----AC---TA-------------CAT----TGTATTACC-----------AT-ATG----T-----T--ATCCATT------------AT--CTT-AC-TTA-----TAGTTATGTTGCTTATGACTTAAAGAATA-CAT----TG--AACTAT-------ATTCAACCTTGCTTTTATATTATTAGATTTTTC-C-AGGGAGC------AA-----TAT-A--TGTAGAAAATAATTCAATGG-TT-CT-AAAAC----------C------TTTT-ACTTGTTCAATAAACAATGAATAAATT-AGA
gi|16 : TTAA-ATAT-TT-T-GTAGTCAA-TTATT-------T-TCTATGTGCATAT-T-------------AAACTGA-A-CAGAG-C---------ATA-ACAT-----AAT-T-ATA---CAT----T-GTTA--CATA---TGTA--A----TAT-AT--A------GT-CTGCT-----------------ag
gi|14 : cTTTA-ATGT-TG-T-AT--TT---TAATTCTTT---T-G-TGCGTACATAT----------------ACC--GTA-CAGAA-C---------ATA-GCAT-----AAT-T-ATA---CAT----T-GTAA--CA-G---T-TAATG----TAT--T--T------TT-CT-CTTAAGAAAAATAAG----A--T--TT-----ACATA---GC-AG---------GAATGTT--TT--A----TACT-GTAACTAT---TA--T----------CGT----A-TATTA-------------AT-cataagaaatacatgatttacatagcaggaatgaattaagttgtaacttttatcatgcgt
gi|5 : tgtgA-ATAG-TT-T-AT--TCAAATATCT-------T-A-TGGCTACATAT--T-----------AAAAT--A-AACTGAA-C---------tgttttcttttagttatgt
gi|5 : taaAT----G-GCTA--CATA---T-TAAAA----TAA-ACTGA------AC-ATGTA-----------------A--T--AT-----ATATA---AT-AG---------GAATGTT--CA--A----A-TT-------AT---TA--T----------AAT----T-AATTA-------------ATTGTC----T-------------TT------------TCTAGTC-ACTTTACTT--GTA-------GCTTGT----TAAA---TA-CCT----TG--AACTAC-------ATTCAACTTTGCTTTTATAT-----GATT----------AGAT------ATT----TCC-A----------------CTAT---TT-CT-ATAAC----------A------TTTT-AGTTGTTCGACAAAAACTGAATACGTTAGGAGGTA--T-----------AATTTGCAAGAAT-AAATGTACG--TTTT------ATAAATAAGCAATAAAACATATATAAT-ACAGTCAATACCTGATGG-------ATG-TC--------TGTTCCCTCATTCCA--GTTCTTCTGAAATATTACATTT-----TTGACTA--GCCATATTACATA-TA-------TTTTA-GAATACATAAACAGTCATAGAACAGATGC-ACTATAGTTTATTTT-GATTTGTTACAAAAAGT--GCACAGTTCGGTT--TAACAT-------TG-ATATAATTTTGCACTAGTGAAAATAATTCTG--TGAAAAATTT-TGAATTGCA-----A-----GGATGAGGTGTGTATCATTTATAAATAAAAATGGTTCTTTATAAAAAAATATTCAAGTCTGTAATATCCAATACACTACCCAATCGT--CTTTCCCACGTTTGCTGTTGATTGCTGGGGCATTCAACAatgtaatatatataataggaatgttcaaattattataattaattaattgtcttttctagtcactttacttgtagcttgttaaataccttgaactacattcaactttgcttttatatgattagatatttccactatttctataacattttagttgttcgacaaaaactgaatacgttaggaggtataatttgcaagaataaatgtacgttttataaataagcaataaaacatatataatacagtcaatacctgatggatgtctgttccctcattccagttcttctgaaatattacatttttgactagccatattacatatattttagaatacataaacagtcatagaacagatgcactatagtttattttgatttgttacaaaaagtgcacagttcggtttaacattgatataattttgcactagtgaaaataattctgtgaaaaattttgaattgcaaggatgaggtgtgtatcatttataaataaaaatggttctttataaaaaaatattcaagtctgtaatatccaatacactacccaatcgtctttcccacgtttgctgttgattgctggggcattcaaca
gi|17 : taaaatagtttattcaaatatcttAAGAATA-CGT----TG--ATCATC-------ATTCCGATTTGCTTTTGTAGTATTATATTTTTC-C-AAGGGGT------AGA----TAT-G--TGTTGAAAACAATTCAAT-A-TT-TTCATAACTTTGTATAAAA------TTTTAACTTGTTCGATAAAACCTGAAT
gi|12 : -------ATTCAACTTTGCTTTGATATTATTAGATTTTTT-CTAAGGGGT------ACA----TAT-A--TGTTGAAAACAATTCAAT-ATTT-CT-GTAAC----------G------TTGT-A
gi|15 : acctttcttatagttgttttacttataacttgattccacattacttatagttgtttttacttataatttgaactacattccacctttcttacagttattttacttataacttgaagcacTTATATTGTTAGATTATTTAC-AAAGGGT------ATA----TTT-AATTATT---AACAATTCAAT-A-TTTCT-ATAAC----------T------TTTA-ACTTGTTCAATAAAAACTGAATAAATTGAGAAACAT-TTTT----T--CAATTTGCAAGAAT-AAATGTACTTTTTTT------ATAAATAAACAATAAAA---GTCAAATAATAGTCAATACa
gi|18 : TAGTATTATATTTTTC-C-AAGGGGT------ACA----TAT-A--TGTTGAAAATAATTCAAT-A-TT-TC-ATAACTTTGT-----AAAACATTTTT-ACTTGTTCGATAAAACCTGAAT
gi|20 : tTGGGAGACA--TTTTATTTT--AAATTTGCAAGAAT-AAATGTACTTTTTTT------ATTAATAATCAACACAATATAGAAAAT-ACAAT
gi|8 : TTAATTG--GCCACACAGCATGTTAAGACTATTTT----AGTACATA--CAGTCACAGAACAAATGT-GATC--GTTTCTTTT-GAGTTGTTACAAA--GTAAACATAATTCGAACCCTAATATTCCAAA-AGGATATAGTTTTTTATGTGTGAAAATATTTATA--TGTAAAATTTAAAAATTGCAATGATA-----A---GATGTGTGCATCATTTATG-ATATAAA--------TAT----------TCCAATTTGTATTGTCAAATACACTA-CCCA-CGTCCCTTTCCCAATTTTATTGTGAA
gi|13 : --GCCATGAAGCATGATAAGTCAATTAC----AGTCCATA--CAGTCATAAAACAGATGCAAACA-AGTGTCTTTC-GAGTTGTTGCAAAAATT--GCATAATTCGG-TTCTGACAT-------TG-------TTTTGGAGTGATGAAAATAACTCTA--TATACAAGTT-TGAAATGCA-----AGGACTG---GAGATGTGTATCATATATTAATAcaaactaccggtttttttcaaatatttcaccaacaattagt
gi|10 : TAGAAAGATTGATT---TAGTTTTTTTT-C--TTTTTAGGTTTGAAAATATTTTTTTTCTTTTTGGATATTCTATTTATTTGCCAATTTTTATACA------------A--TGGAATTGCAG-ATATTAACCC-AAA----TACTTTACA-AG-AG-------AAGTGCAT-ATCTCACATTTTGCACATAAACT----TTC--AAATACCAG----GGACACTTATTAACAACT---TCGTTTTTAAAATATATTCCC-TATTACACATG--TTTAT-AAACACATTATTA-----ATCTTTATaaga
gi|2 : attaataaaga-TATAT-A---CAT-TTTTTCCAATTAACTGAAATTGAAGAATGTCAGAGGCAAACAATTATTTTCAACAATAGGGTCTATAATATATAATCTCTTATg
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111
lowQualScore : 11111 111 33333333333333 111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2222222222222222222 1111 1111111111 111111111111 11111111 11 2222222 222 111111 33333333333 111 222 1111 55555555555 1111 1 11 222 22222 1 11111 44444 11 1111 4444 11 66666666666 1 00000000000 3333 222222 1 22 2 55555
lowQualScore : 3 3 11111 3 44 3 1 3 444 11111111111111 3 777 1 3 55 0 3 44 555 7777 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 1 1111111111111111111 2 3 0 0000 2 4444444444 3 44 888888888888 33333333 666 2 3 0 11 0 1111111 5 777 999999 1 5 1 0 5 0 3 0 3 1 1 22222222222 5 4 8 1 3 3 77 3 3 999 5 5 111 2 77 1111 0 5 1 77 0 5 11111111111 4 5 1 1 5 5 9999 1 1 0 0 8888 1 11 0 1 1 777 77777 0 6 22222 3 3 77777 4 44 6 1 44 0 5555 4444 99 44444444444 1 3 1 22 1 44444444444 1111 1 22 3 444444 6 1 1 1 5 77 0 2 3 00000
lowQualScore : . . ..... . .. . . . ... .............. . ... . . .. . . .. ... .... .......................................................................................................................................................................................................................................................... . . ................... . . . .... . .......... . .. ............ ........ ... . . . .. . ....... . ... ...... . . . . . . . . . . . ........... . . . . . . .. . . ... . . ... . .. .... . . . .. . . ........... . . . . . . .... . . . . .... . .. . . . ... ..... . . ..... . . ..... . .. . . .. . .... .... .. ........... . . . .. . ........... .... . .. . ...... . . . . . .. . . . .....
lowQualScore : 3 3 77777 3 66 3 0 3 333 33333333333333 3 222 0 3 55 5 3 66 888 7777 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 9 0 8888888888888888888 9 1 2 4444 3 6666666666 3 66 333333333333 22222222 444 3 1 9 99 1 4444444 0 555 444444 4 3 6 3 7 4 5 6 2 8 0 22222222222 0 0 0 0 2 7 99 9 9 444 7 7 000 1 99 0000 1 7 4 99 1 7 00000000000 9 3 0 4 7 7 7777 0 7 6 6 4444 0 00 7 0 0 000 00000 0 5 55555 5 2 22222 2 00 7 0 77 7 0000 3333 77 00000000000 0 3 0 00 0 55555555555 0000 0 00 0 555555 0 0 0 0 5 55 0 5 0 00000
consensus : TTTTTTTA-ATAT-TT-----T-AT--TC-AATTAT-TT-G-TGTGTACATAT-CT-----------AAAAT-A-A-CNGAA-CATAACATAATT-ATACATT-GTTA--CATA---TGTAA----TATA-----------TAT--AAT-CTGC--TCA-------------AT----TT---AT-A--------TAGCAGGA-----AT------GT--TT-------------T--A----T-C-T-A-----ATT--ATCGT----T------TATTA-------------AT-A----TC----T-----A--A---ATT------------TT--GTC-A--TTA-----ATA-----ACT----------TG--TTAAAGAATACCTTGAACT------------A------CATTCCACCTTGCTTTTATA-TTATTAGATT-TTTCC----AAGGGGTACAT----------AT-A--TGTTGAAAACAATTCAATATTTCTATAAC-----------NTT--------TT---ACTTGTTCGATAAAAACTGAATAAATTGGGAGACA--TTTT----T--CAATTTGCAAGAAT-AAATGTAC---TTTT------ATAAATAAGCAATAAAACATATAAAAT-ACAGTCAATACATGACGAGCACTTAATG-T-CAAA-A-TAATGTTCTCTCGTTTNA-TTTCTTCTGAAATATTACATTTGTCCTTTAACTG--GCCATAAAGCATGATAAG-TAT-A-TTTTN-GAGTACATA--CAGTCATAGAACAGATGCGA-TATAGTTTCTTTT-GAGTTGTTACAAAAAGT--GCACAATTCGGTTTCTGACA-T-TC--ACA--CGTATATAGTTTTGCATTAGTGAAAATAATTCTATGAAGAATTT-TGAATTGC-AA-GANTGGAGGTGTGTATCATTTATGAATATAAATGGTTGTTTAT-ACAAAATATTCCAGTCTGTAATGTCCAATACACTACCCA--CGTCCCTTTCCCACTTTTGTTGTGAGGTACTGGGGCATTCAACAAAATATTTCAAAAANTGAGGGTAGAAAGATTGATTTA--TTTTTTTG--CAATTTTTAG-TTTGGAAATATTTTTNTT-TTTTNGGATACTCTATTTTTTTACC-ATTTTTTATACATTTTTTCCAATTAACTGGAATTGCAGAATATCAGACCCAAA----TACTTT--ACAA-AGG------AATACAT-ATCTCATATTTTNCGCATNAACT----TTCAAGAATGCCAGAAGCGGACANTTATCANCCGCTATATCGTTTNCGAAGTATATTCCCTTGTTACACATGGCCTTATAAAANACANTATCATAATTATCTTTAT
Reference ( family-65 ) : TTTTTTTA-ATAT-TT-----T-AT--TC-AATNAT-TT-G-TGTGTACATAT-CT-----------AAAAT-A-A-CNGAA-CATAACATAATT-GTACATT-GTTA--CATA---TGTAA----TATA-----------TAT--AAT-CTGC--T---------------AT----TT---AT-A--------TAGCAGGA-----AT------GT--TT-------------T--A----T-C-T-A-----ATT--ATCGT----T------TATNA-------------AT-A----TC----T-----A--A---ATT------------TT--GTC-A--TTA-----ANA-----ACT----------TG--TTAAAGAATACNTTGAACT------------A------CATTCCACCTTGCTTTTATA-TTATTAGATT-TTTCC----AAGGGGTACAT----------AT-A--TGTTGAAAACAATTCAATATTTCTATAAC-----------NTT--------TT---ACTTGTTCGATAAAAACTGAATAAATTGGGAGACA--TTTT----T--CAATTTGCAAGAAT-AAATGTAC---TTTT------ATAAATAAGCAATAAAACATATAAAAT-ACAGTCAATACATGACGAGCATTTAATG-T-CAAA-A-TAATGTTCTCTCGTTTTA-TNTCTTCTGAAATATTACATTTGTCCTTTAACTG--GCCATAAAGCATGATAAG-T-T-A-TTTTT-GAGTACATA--CAGTCATAGAACAGATGCGA-TATAGTTTCTTTT-GAGTTGTTACAAAAAGT--GCACAATTCGGTTTCTGACA-T-CC--A-A--CGTATATAGTTTTGCATTAGTGAAAATAATTCTATGAANAATTT-TGAATTGC-AA-GACTGGANGTGTGTATCATTTATGAATATAAATGGTTGTTTAT-ACGAAATATTCCAGTCTGTAATGTCCAATACACTACCNA--CGTCCCTTTCCCACTTTTGTTGTGAGGTACTGGGGCATTCAACAAAACATTTCAANAANTGAGGGTAGAAAGATTGATTTA--TTTTTTTG--C-ATTTTTAG-TTTGGAAATATTTTTNTT-TTTTTGGATACTCTATTTTTTTAC--A-TTTCTATACATTTTTTCCAATTAACTGGAATTGNAGAATGTCAGNNNCAAACAATTACTTTNNACAGTAGGGTCTATAATATAT-ATCTCATATTTTNCNNATNAACTGAAATTNAAGAATGCCAGAGGCGGACANTTATTNNCAACNATANNGTCTNTAANATATANTCCCTTATTACACATG--TTTAT-AAACACATTATTA-----ATCTTTAT
gi|1 : TTTTTTTA-ACAT-TT-----T-AT--TC-AATAAT-TT-G-TGTGTACACAT-CT-----------AAAAC-A-A-CTGAA-CGTAACATAATT-GTACATT-GTTA--CATA---TGTAA----TATA-----------TAT--AAT-CTGC--T---------------AT----TT---AT-A--------TAATATGA-----AT------GT--TT-------------T--A----T-C-T-G-----ATT--ATCGT----T------TATAA-------------AT-A----TC----T-----A--A---ATT------------TT--GTC-A--TTA-----AAA-----ACT----------TG--TTAAAGAATACATTTAACT------------A------GATTCCACCTTGCTTTTATA-TTGTTAGATT-TTTTC----AAGAGGTACTT----------AT-A--TGTTGAAAACAATTCTATA-TTCTATAAC-----------ATT--------TT---ACTTGTTCGATACAAACTGAATAAATTGAGAGACA--TTTT----T--CAATTTGCAAGAAT-AAATATAC---TTTT------ATAAATGAGCAATAAAACATATAAAAT-ACAATCAATACATGGCGAGCACTTAATG-TCCAAC-A-CAATGTTCTCTCGCTTTA-TTTCTTCTGAAATATTACATTTGTCCTTTAACTG--GCTATAAAGCATAATAAG-T-TCATTTTTT-GAGTGCATA--CAGTCATAGAACAAATGCAA-TATAGTTTCTTTT-GAGTTGTTACAAAAGGT--ACACAATTTGGTTTCTGACA-TACC--ACA--CGTATACAATTTTGCATTAGTAAAAATAATTATCTGAAGAATTT-TGAATTGC-AA-----GGAGGTGTGTATCATTTATGAATATAAATGGTTGTTTAT-ACAAAATAATCCAGTCTGTAATGTCCAATACATTACCAA--CGTCCCTTTCCCACTTTTGTTGTGAAGTACTGGGGCATTCAACAAAATATTTCAAAAATTGAGTGTAGAAAGATTGATTT---TTTTTTTG--CAATTTTTAG-TTCGGAAATATTTTTCAT-TTTTAGGATACTCTATTTTTTTACT-ATTTTTTATACATCTTTTCCAATTAGCTGGAATTGCCG-ATATCAACCCCAAA----TACTTTACACAA-AG-------AATACAT-ATCTCATATTTTTCGCATCAACT----TTC--GAATGTCAGAAGCAAACAGTTATCATCCGCTATATCGTTTACGAAGTATATTCCCTTGTTACACATAGCCTTATAAAAGACAGTATCATAATTATTTTTAT
gi|10 : AATAAAGATAGAAAGATTGATTTAG-TTTTTTTT--C--TTTTTAGGTTTGAAAATATTTTTTTTCTTTTTGGATATTCTATTTATTTGCCAA-TTTTTATACA-------------A-TGGAATTGCAGA-TATTA-ACCCAAA----TACTTT--ACAAGAGA------AGTGCAT-ATCTCACATTTTGCACATAAACT----TTCAA--ATACCAG----GGACACTTATTAACAACT---TCGTTTTTAAAATATATTCCCT-ATTACACATG--TTTAT-AAACACATTATTA-----ATCTTTATa
gi|11 : attTTTTTA-ATAT-GTA----T-AT--TC-AATCAT-TT---TGTGTGCATATACT-----------ATTAT-A-T-TTGGAGCATTACATAATT-ATACATTTGTAA--TATAGAGTCTAA----T-TA-----------TAGGAAAT-ATAT--G---------------AT----TT---AC-A--------TAGCAGGA-----AT------GCTGTT-------------T--ACAGTT-G-T-A-----ACTACATCGTAGTAT------CATAC-------------AC-A----TA----T-----A--A---ATTGCTTTCGTATAGTT--GT--G--TTACTT--ACA-----AC---------------TAAAAGAATACCTGAAACT------------A------CAATCCACCTTGCATTTATA-TTATTCGATT-TTTg
gi|12 : ttgATAATTTGAACT------------A------CATTCCACCTT--TCTTACAGTTATTtaag
gi|12 : acctttcttatagttgttttacttataacttgattccacattacttatagttgtttttacttATAACTTGAAGC------------A------CATTCAACTTTGCTTTGATA-TTATTAGATT-TTTTCT---AAGGGGTACAT----------AT-A--TGTTGAAAACAATTCAATATTTCTGTAAC-----------GTT--------GT---Attacttataacttgaagcacattcaactttgctttgatattattagattttttctaaggggtacatatatgttgaaaacaattcaatatttctgtaacgttgtaa
gi|13 : acctttcttatagttgttttacttataacttgattccacattacttatagttgtttttacttataatttgaactacattccacctttcttacagttattttactt--GCCATGAAGCATGATAAG-T-C-A-ATTAC--AGTCCATA--CAGTCATAAAACAGATGCAAACA-AGTGTCTTTC-GAGTTGTTGCAAAAATT--GCATAATTCGGTT-CTGACA-T-T----------------GTTTTGGAGTGATGAAAATAACTCTATATACAAGTT-TGAAATGC-AAGGACTGGAGATGTGTATCATATATTAATAa
gi|14 : TTTA-ATGT-TG-----T-AT--TTTAATTCT-TTTG-TGCGTACATAT--------------ACCGT-A---CAGAA-CATAGCATAATT-ATACATT-GTAA--CA-G---T-TAA----TGTA-----------T-T--TTT-CT-C--TTAAGAAAAATAAG--AT----TT---AC-A--------TAGCAGGA-----AT------GT--TT-------------T--A----TAC-T-GTAACTATT--ATCGT----A------TATTA-------------AT-aaga
gi|15 : tgtgTTATA-TTGTTAGATTATTTAC----AAAGGGTATAT----------TT-AATTATT---AACAATTCAATATTTCTATAAC-----------TTT--------TA---ACTTGTTCAATAAAAACTGAATAAATTGAGAAACAT-TTTT----T--CAATTTGCAAGAAT-AAATGTACTTTTTTT------ATAAATAAACAATAAAA---GTCAAATAATAGTCAATACtgttttcttttagttatgt
gi|16 : TTAA-ATAT-TT-----T-GTAGTC-AATTAT-TT-TCTATGTGCATAT--T-----------AAACTGA-A-CAGAG-CATAACATAATT-ATACATT-GTTA--CATA---TGTA------ATA-----------TAT--AGT-CTGC--TCATAAGAAATACATGAT----TT---AC-A--------TAGCAGGA-----AT------G
gi|17 : cAAGAATACGTTGATCA------------T------CATTCCGATTTGCTTTTGTA-GTATTATATT-TTTCC----AAGGGGTAGAT----------AT-G--TGTTGAAAACAATTCAATATTTTCATAAC-----------TTTGTATAAAATTTTAACTTGTTCGATAAAACCTGAATaattaagttgtaacttttatcatgcgt
gi|18 : TA-GTATTATATT-TTTCC----AAGGGGTACAT----------AT-A--TGTTGAAAATAATTCAATATTTC-ATAACTTTGTAAAACATTT--------TT---ACTTGTTCGATAAAACCTGAAT
gi|19 : tTTTTTA-ACAT-TT-----C-GT--TC-AATAAT-TT-G-TGTGTACACAT-CT-----------AAATA-A-A-CCCAA-TAAAGGATAATT-GTTCATT-GTTA--CATA---TATA
gi|2 : ttgTTTTTTG--TAT-TT-------AT--TC-AATTAT-TTTG-TGTGTACATGT--T-----------AAGAT-ATA-CAGAT-TATAATATATTT-ATACATT-GTTAAATATA---TGTAA----TATA-----------TAT--CCT--TGT--TCGATC----------AT----TTGAAAT-A--------TAT---GATTTACAT------AT--TT-------------T--AGGT-T-G-T-A-----ACT--ATCAT----CA-----TATAATAATTGCTTTCTTAT-A-----C----T-----AGTA---GTT------------AT--TTT-A--CTA-----ATA-----ACT----------T---TCAGAG--TACCTTGA------------------------TTCCATCTTGCTTTTATA-TTTTTAGACT-TTTCC----AAGTGGTACAT----------AT-A--TGTTGACAACGATTCAATATTTCTATAA------------ATT--------TT---ACTTGTTCAATAAAAATTGAATAAATTG---------------------------CAAGAGT-AAATGTAC---TTTTTTTTTTATAAACAAACAATAAAATATCAAGAAT-GCAGTCAATTCATGAAGAGCATTTTGTGCT-CAAA-AATAATGTTCTCTAGTTTGA-TATCTTCTGAAATATTACATTTGTCCTTTAATTG--GCTAT-AAGCGTGGTAAG-TAT-A-TT---------------CAGTCATAAAACGGATGCGA-AATAGTTTCTTTTCGATGTATTACAAAAAGT--ACACAATTTGGATTCTGACA-T-TC--A-AATTGTATATAGTTTTGTATTGGTGAAAATAATTCTATAAACAA-AT-TGAATTGCAAA-GATTGGACGTGTGTATCTCTTTCGGAAAT-AATGGTTGTTTAT-ACGAAATATTCCAATCTGTAATGTCCAATACACTACCCA--CGTCCCTTTCCTACTTTTGTGATGAGGTACTTGGGCATTCAACAAAACATTTCAATAAATGAAGATAGAAAGATTGATTTA--CTTGTTTGACC-ATTGTTAG-TTTAGAAATATTTCGATT-TTTTGGGATACTC-----TTTTA---------TATACATTTTTTCCAATTAACTGAAATTGAAGAATGTCAGAGGCAAACAATTATTTTCAACAATAGGGTCTATAATATATAATCTCTTATg
gi|20 : TGGGAGACA--TTTTATTTT--AAATTTGCAAGAAT-AAATGTACTTTTTTT------ATTAATAATCAACACAATATAGAAAAT-ACAAT
gi|3 : TTTTTA-ACAT-TT-----T-AT--GC-AATAAG-TT-G-CGTGTACACAT-CT-----------AAATA-A-A-CTGAA-CATAACATAATTTGT-CAGT-GTTA--CATA---TGTAAAATATATAATCTGCTCGAATAT--AAT-ATATAAT---------------ATCT--TT---AT-A--------TAGTAGGA-----AT------GT--TT-------------C--A----T-C-T-A-----ATT--ATCAT----T------TTTAA-------------AT-A----AC----T-----T--T---ATT------------TT--GTC-A--TTA-----AAATCATAACT----------TG--TTACAGAATACATTTAACT------------A------CATTGCATCTTGCTTTTACA-TTGTTAGATT-TGTTC----AAGGGGTACAT----------AT-A--TGTTGAAAACAATTCTATATTTCTATAAC-----------TTT--------TT---ACTTGTTCGATAAAAACTGAATAAATTGGGAGACA--TTTT----TTTCAATTTGCAAGAAT-AAATACAC---TTTTT-----ATAAATGAGCAATAAAACATATAAAAT-ACAATCAATACATGACGAGCACTTAATG-C-CCAACA-TAATGTTCTCTCGCTTTA-TTTCTTCTGAAATATTACATTTGTCCTTTAA-TG--GCTATAAAGCATAATAAG-TAT-A-TTTTTAGAGTGCAAA--CAGTCATAGAACAAATACAA-TATAGTCTCTTTT-GAGTTGTTACAAAAGGT--ACACAATTCGATTTCTGACA-TGCC--ACA--CGTATACAATTTTGCATTAGTAAAAATAATTCTATGAAGATTTT-TGAATTGC-AAAGACTGGATGTGTGTATCATTTATGAAAATAAATGGGTGTTTAT-ACAAAATTTTCCAGTCTGTAATGTCCAATACCTTACCAA--CGGCCCTTTCCCACTTTTGTTGTGAGGTACTGGGGCATTCAACAAAATATTTCAAAAATTGAGGGTAGAAGCATTGATTTACTTTTTTTTG--CAAATTTTAG-TTT-GAAATATTTTCA-T-TTCTTGGATACTTTATTTTTTTAT--ATTTTCTATACATTTTTTCCAA
gi|4 : gTCTTTTTG-AT-T-TTATCAGT-AT--TT-AGTTGC-AT-G-TGTTTACATA--CTCATAGCAAAAAAAAAT-A-AATTGAA-TGCAACATCATA-CTACACT-GTTA--CATA---TGTAA----TATA-----------TAT--AAT-CTG--------------------T----TC---AT-A--------TAGT----------T------AT--TG-------------T--A----T-T-TTA-----ATT--ATTTTCA--T------TATTT-------------AT-T----GC----T-----A--A---ATTG-----------TTA-GTC-G--TTATAATTAAA-----ACA----------GG--TGGAAGAATAGCTTAAGCTTAAATAATTATTA------TATTTCACATTGTTTTTATA-TTTTCATATT-TTACT----AAGGGGTGTATCGAGTATAATATTA--TGTTGAAAGTAAATCAATATTTCTATTAT-----------AGT--------TC---A-TTGGTCTATGAAA-CTGAATAAATTTAGAGACA--TTTTAT--T--CAATTTGCAAG--T-AATTATACG--TTTT------ATATATAAGCAATA-------------------CAAT---------GTATCTAATG-G-AAAA-A--AAT--CCTCT-GTTTAAATGTCTTCTAAAATATTACATGTATCCCTTTACTGTGGCTATTAAGCATGATAAA-TAT-A-TTTTA-GAGTACGTA--CAAACATATAACAAATGTAG-TACAGTTTCTTTT-GAGATGTTACCAAAATT--GCACAATTCCATTTCTTACATT-TT--ACA--CGTACATAG--TTG-ATTATTGAATATTTCTCTATAAAGAATTT-TGAATTAC-TA-TAGTGGAGGTGCGAAT
gi|5 : cttA-ATAG-TT-----T-AT--TC-AAATATCTT-A-TGGCTACATAT--T-----------AAAAT-A-AACTGAA-C-----------------------------A---TGTAA----TATA-----------TAT--AAT--------------------------------------------------AGGA-----AT------GT--TC-------------A--A----A-T-T-A------TT--ATAAT----T------AATTA-------------ATTG----TC----T-------------TT------------TCTAGTC-ACTTTACTT--GTA-----GCT----------TG--TTAAA---TACCTTGAACT------------A------CATTCAACTTTGCTTTTATA-T-----GATT-----------AG---------------------A--TATT--------TCCACTATTTCTATAAC-----------ATT--------TT---AGTTGTTCGACAAAAACTGAATACGTTAGGAGGTA--T-----------AATTTGCAAGAAT-AAATGTACG--TTTT------ATAAATAAGCAATAAAACATATATAAT-ACAGTCAATACCTGATGG-------ATG-T-C---------TGTTCCCTCATTCCA-GTTCTTCTGAAATATTACATTT-----TTGACTA--GCCATATTACATA--------T-A-TTTTA-GAATACATAAACAGTCATAGAACAGATGCAC-TATAGTTTATTTT-GATTTGTTACAAAAAGT--GCACAGTTCGGTTT--AACA-T-T---------G-ATATAATTTTGCACTAGTGAAAATAATTCTGTGAAAAATTT-TGAATTGC-AA-GGAT-GAGGTGTGTATCATTTATAAATAAAAATGGTTCTTTATAAAAAAATATTCAAGTCTGTAATATCCAATACACTACCCAATCGT--CTTTCCCACGTTTGCTGTTGATTGCTGGGGCATTCAACA
gi|6 : taaTTTTTTTAGATAT-TT-----TTAT--TC-AATCAT-TTTG-TGTGTACATAT--T-----------AAGAT-ATA-CAGAA-CATAACAAAAGT-ATACACG-GTTA--AATA---TGTAA----TATA-----------TAG--G---CTGT--TCATAAGAA-------ATAAGATT---ATCA--------TAGAAGGA-----ATTTTTAGGT--TTAACTACATTGTATT--A----T-CAT-A-----CGT--ATCGT----A------TATTA-------------TT-A----TC----TTTTTTAT-A---GTT------------AT--GTTGA--TTA------TA-----ACT----------T-----AAATAATACCTTGAACT------------A------CATTCCACCTTTCTTTTATA-TTATTAGATT-TTTCC----AAGGGGTACAC----------GT-T--TGTTGAAAATAATTCAATATTTCTATAAC-----------CTT--------TT---ACTTTTTC-----------AATAAACTGGGAGCCATTTTTT----T--CAATTTTCAAGAATGAAATA-AT---TTTG------ATA
gi|7 : gTTTA-ATATGTT-----T-AT--TA-AATCAT-TTTG-TGTGTATATAT--T-----------AAAAT-ATA-CATAA-CATAACATAATC-ATGCATT-GTAA--CATA---TTTAA----TATA-----------TA---AAT-AAGA--A---------------ATA---TG---AT-A--------TA-CAGGA-----AT------GT--TT-------------T--AAGT-T-T-T-A-----ACT--A-CAT----TG-----TATTACC-----------AT-A----TG----T-----T--ATCCATT------------AT--CTT-A--CTT-----ATA-----GTTATGTTGCTTATGACTTAAAGAATACATTGAACT------------A------TATTCAACCTTGCTTTTATA-TTATTAGATT-TTTCC----AGGGAGCA-AT----------AT-A--TGTAGAAAATAATTCAATGGTTCTAAAAC-----------CTT--------TT---ACTTGTTCAATAAACAATGAATAAATTAGAAG
gi|8 : TTAATTG--GCCACACAGCATGTTAAGAC-T-A-TTTT---AGTACATA--CAGTCACAGAACAAATGTG---ATCGTTTCTTTT-GAGTTGTTAC--AAAGTAAACATAATTCGAACCCTAATA-T-TCCAA-A--AGGATATAGTTTTTTATGTGTGAAAATATTTATATGTAAAATTTAAAAATTGC-AATGATAAGATGTGTGCATCATTTATG-ATAT------------------AAATATTCCAATTTGTATTGTCAAATACACTACCCA--CGTCCCTTTCCCAATTTTATTGTGA
gi|9 : TTTTTA-ACAT-TG-----T-AT--TC-ACTTAT-TT-G-TGT--ACATAT--T-----------AAAAT-A-AACAGAA-CATAATATGATT-GTACATT-GTTA--TACC---TGTGA----TATA-----------TA---AATGCTGC--TCATAAATGC------AT----AT---AT-ACATACAAATAGAAAGA-----AT------GT--TT-------------CGAA----T-C-TTA-----ATT--ATTAT----TAGGATTCATTG-------------AT-ACATTTCAGCTT-----A--A---ATT------------TA--AT--A--TCT-----ATA-----ACT----------TG--TTAAATAACATTTTGAACT------------AATCATACATTCAAACTTGCATTTATA-TTATTAGATC-TTTACACTTAATGTGTATAT----------AC-A--Tacaaactaccggtttttttcaaatatttcaccaacaattagt
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 111 33333333333333 11111 111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2222222222222222222 1111 1111111111 111111111111 11111111 2222222222 333 111111 3333333333 1111 222222222 1 1 1 11 222 1 1 1 1 1111 11 1 2222 11 444444444444 1 1 444 2222 222 1 11 1 22222
lowQualScore : 3 3 11111 3 44 3 1 3 444 11111111111111 11111 1 3 1 3 3 44 555 3 0 333 55 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 6666666666666666666 0 3 0 0000 2 4444444444 3 44 888888888888 33333333 666 2 3 0 4444444444 5 222 444444 1 5 1 0 5 0 3 0 3 1 1 2222222222 5 1 8 1 3 3 77 22 77 5 2222 2 77 1 1 88 5 1 77 5 5 777777777 4 5 1 77 1 1 4444 0 1 0 0 8 11 1 777 0 9 0 6 11 0 0 3 9999 0 44 6 44 2 8888 88 222222222222 3 3 1 1 555 3333 1 1 2 111 1 5 77 5 1 1 77777
lowQualScore : . . ..... . .. . . . ... .............. ..... . . . . . .. ... . . ... .. .................................................................................................................................................................................................................................................. . ................... . . . .... . .......... . .. ............ ........ ... . . . .......... . ... ...... . . . . . . . . . . . .......... . . . . . . .. .. .. . .... . .. . . .. . . .. . . ......... . . . .. . . .... . . . . . .. . ... . . . . .. . . . .... . .. . .. . .... .. ............ . . . . ... .... . . . ... . . .. . . . .....
lowQualScore : 3 3 77777 3 66 3 2 3 222 33333333333333 66666 0 3 7 6 3 66 888 8 1 555 00 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 5 0000000000000000000 3 1 2 4444 3 6666666666 3 66 333333333333 22222222 444 3 1 9 4444444444 0 555 444444 4 3 6 3 7 4 5 6 2 4 0 2222222222 0 0 0 0 2 7 99 99 99 7 1111 1 99 4 7 00 7 4 99 4 7 777777777 9 3 7 44 4 4 3333 7 7 6 6 0 00 0 000 0 2 0 5 88 0 8 2 8888 8 00 7 77 0 3333 33 777777777777 3 3 0 0 555 5555 0 0 5 555 0 5 55 5 0 0 55555
consensus : TTTTTTTA-ATAT-TT-----T-AT--TC-AATTAT-TT-G-TGTGTACATAT-CT-----------AAAAT-A-A-CNGAA-CATAACATAATTATA-CATT-GTTA--CATA---TGTAATATATAT--AAT-CTGCTC------A-------------A-----------------T----TT---AT--------ATAGCAGGA-----AT------GT--T-------------TT--A----T-C-T-A-----ATT--ATC------GT--T-TAT--TA---AT---------A----T-C-----TA--A---ATT-TT--GTC-A--TTA-----AT---AACT----------TG--TT-----------AAAGAATACCTTGAAC------T------------ACATTCCACCTTGCTTTTATATTATTAGATT-TTTCC----AAGGGGTACAT----------AT-A--TGTTGAAAACAATTCAATATTTCTATAAC-----------NTT--------TT---ACTTGTTCGATAAAAACTGAATAAATTGGGAGACAT-TTTT----TCAATTTGCAAGAAT-AAATGTACT--TTTT------ATAAATAAGCAATAAAACATATAAAAT-ACAGTCAATACATGACGAGCACTTAATGCTCAAA-A-TAATGTTCTCTCGTTTNA-TTTCTTCTGAAATATTACATTTGTCCTTTAACTG--GCCATAAAGCATGATAAGT--ATA-TTTTAGAGTACATA--CAGTCATAGAACAGATGCGATAT-AGTTTCTTTT-GAGTTGTTACAAAAAGT--GCACAATTCGGTTTCTGACA-T-T-CACAC-GTATATAGTTTTGCATTAGTGAAAATAATTCTATGAAGAATTT-TGAATTGC-AA-GANTGGAGGTGTGTATCATTTATGAATATAAATGGTTGTTTAT-ACAAAATATTCCAGTCTGTAATGTCCAATACACTACCCA--CGTCCCTTTCCCACTTTTGTTGTGAGGTACTGGGGCATTCAACAAAATATTTCAAAAANTGAGGGTAGAAAGATTGATTTA--TTTTTTTG-CAATTTTTAG-TTTGGAAATATTTTTNTT-TTTTNGGATACTCTATTTTTTTACTATTTTTTATACATTTTTTCCAATTAACTGGAATTGCAGAATATCAGACCCAAA----TACTTT--ACA-A-AAG------AA-TACAT-ATCTCATATTTTNCGCATNAACTTTCA-GAATGCCAGAAGCGGACANTTATCANCCGCTATATCGTTTNCGAAGTATATTCCCTTGTTACACATGGCCTTATAAAANACANTATCATAATTATCTTTAT
Reference ( family-65 ) : TTTTTTTA-ATAT-TT-----T-AT--TC-AATTAT-TT-G-TGTGTACATAT-CT-----------AAAAT-A-A-CNGAA-CATAACATAATTATA-CATT-GTTA--CATA---TGTAATATATAT--AAT-CTGCTC------A-------------A-----------------T----TT---AT--------ATAGCAGGA-----AT------GT--T-------------TT--A----T-C-T-A-----ATT--ATC------GT--T-TAT--TA---AT---------A----T-C-----TA--A---ATT-TT--GTC-A--TTA-----AT---AACT----------TG--TT-----------AAAGAATACCTTGAAC------T------------ACATTCCACCTTGCTTTTATATTATTAGATT-TTTCC----AAGGGGTACAT----------AT-A--TGTTGAAAACAATTCAATATTTCTATAAC-----------NTT--------TT---ACTTGTTCGATAAAAACTGAATAAATTGGGAGACA--TTTT----TCAATTTGCAAGAAT-AAATGTAC---TTTT------ATAAATAAGCAATAAAACATATAAAAT-ACAGTCAATACATGACGAGCACTTAATG-TCAAA-A-TAATGTTCTCTCGTTTNA-TTTCTTCTGAAATATTACATTTGTCCTTTAACTG--GCCATAAAGCATGATAAGT--ATA-TTTTNGAGTACATA--CAGTCATAGAACAGATGCGATAT-AGTTTCTTTT-GAGTTGTTACAAAAAGT--GCACAATTCGGTTTCTGACA-T-T-CACAC-GTATATAGTTTTGCATTAGTGAAAATAATTCTATGAAGAATTT-TGAATTGC-AA-GANTGGAGGTGTGTATCATTTATGAATATAAATGGTTGTTTAT-ACAAAATATTCCAGTCTGTAATGTCCAATACACTACCCA--CGTCCCTTTCCCACTTTTGTTGTGAGGTACTGGGGCATTCAACAAAATATTTCAAAAANTGAGGGTAGAAAGATTGATTTA--TTTTTTTG-CAATTTTTAG-TTTGGAAATATTTTTNTT-TTTTNGGATACTCTATTTTTTTACCATTTTTTATACATTTTTTCCAATTAACTGGAATTGCAGAATATCAGACCCAAA----TACTTT--ACA-A-AGG------AA-TACAT-ATCTCATATTTTNCGCATNAACTTTCAAGAATGCCAGAAGCGGACANTTATCANCCGCTATATCGTTTNCGAAGTATATTCCCTTGTTACACATGGCCTTATAAAANACANTATCATAATTATCTTTAT
gi|1 : TTTTTTTA-ACAT-TT-----T-AT--TC-AATAAT-TT-G-TGTGTACACAT-CT-----------AAAAC-A-A-CTGAA-CGTAACATAATTGTA-CATT-GTTA--CATA---TGTAATATATAT--AAT-CTGCT---------------------A-----------------T----TT---AT--------ATAATATGA-----AT------GT--T-------------TT--A----T-C-T-G-----ATT--ATC------GT--T-TAT--AA---AT---------A----T-C-----TA--A---ATT-TT--GTC-A--TTA-----AA---AACT----------TG--TT-----------AAAGAATACATTTAAC------T------------AGATTCCACCTTGCTTTTATATTGTTAGATT-TTTTC----AAGAGGTACTT----------AT-A--TGTTGAAAACAATTCTATATT-CTATAAC-----------ATT--------TT---ACTTGTTCGATACAAACTGAATAAATTGAGAGACA--TTTT----TCAATTTGCAAGAAT-AAATATAC---TTTT------ATAAATGAGCAATAAAACATATAAAAT-ACAATCAATACATGGCGAGCACTTAATG-TCCAACA-CAATGTTCTCTCGCTTTA-TTTCTTCTGAAATATTACATTTGTCCTTTAACTG--GCTATAAAGCATAATAAGTTCAT--TTTTTGAGTGCATA--CAGTCATAGAACAAATGCAATAT-AGTTTCTTTT-GAGTTGTTACAAAAGGT--ACACAATTTGGTTTCTGACA-TAC-CACAC-GTATACAATTTTGCATTAGTAAAAATAATTATCTGAAGAATTT-TGAATTGC-AA-G----GAGGTGTGTATCATTTATGAATATAAATGGTTGTTTAT-ACAAAATAATCCAGTCTGTAATGTCCAATACATTACCAA--CGTCCCTTTCCCACTTTTGTTGTGAAGTACTGGGGCATTCAACAAAATATTTCAAAAATTGAGTGTAGAAAGATTGATTT---TTTTTTTG-CAATTTTTAG-TTCGGAAATATTTTTCAT-TTTTAGGATACTCTATTTTTTTACTATTTTTTATACATCTTTTCCAATTAGCTGGAATTGCCG-ATATCAACCCCAAA----TACTTT--ACACA-AAG------AA-TACAT-ATCTCATATTTTTCGCATCAACTTTC--GAATGTCAGAAGCAAACAGTTATCATCCGCTATATCGTTTACGAAGTATATTCCCTTGTTACACATAGCCTTATAAAAGACAGTATCATAATTATTTTTAT
gi|10 : AATAAAGATAGAAAGATTGATTTAG-TTTTTTTT-C--TTTTTAGGTTTGAAAATATTTTTTTTCTTTTTGGATATTCTATTTATTTGCCAATTTTTATACA-------------A-TGGAATTGCAGA-TATTA-ACCCAAA----TACTTT--ACA-A-GAG------AAGTGCAT-ATCTCACATTTTGCACATAAACTTTCA--AATACCAG----GGACACTTATTAACAACT---TCGTTTTTAAAATATATTCCC-TATTACACATG--TTTAT-AAACACATTATTA-----ATCTTTATa
gi|11 : attTTTTTA-ATAT-GTA----T-AT--TC-AATCAT-TT---TGTGTGCATATACT-----------ATTAT-A-T-TTGGAGCATTACATAATTATA-CATTTGTAA--TATAGAGTCTAAT-TATAGGAAAT-ATAT--------G-------------A-----------------T----TT---AC--------ATAGCAGGA-----AT------GCTGT-------------TT--ACAGTT-G-T-A-----ACTACATC------GTA-G-TAT--CATACAC---------A----T-A-----TA--A---ATTGCT--TTC-G--T-------AT---AGTTG---------TG--TTACTTACAACTAAAAGAATACCTGAAAC------T------------ACAATCCACCTTGCATTTATATTATTCGATT-TTTg
gi|12 : ttgATAACTTGAAG------C------------ACATTCAACTTTGCTTTGATATTATTAGATT-TTTTCT---AAGGGGTACAT----------AT-A--TGTTGAAAACAATTCAATATTTCTGTAAC-----------GTT--------GT---Ataag
gi|13 : acctttcttatagttgttttacttataacttgattccacattacttatagttgtttttacttataatttgaactacattccacctttcttacagttattttactt--GCCATGAAGCATGATAAGT--CAA-TT--ACAGTCCATA--CAGTCATAAAACAGATGCAA-ACAAGTGTCTTTC-GAGTTGTTGCAAAAATT--GCATAATTCGG-TTCTGACA-T-T--------------GTTTTGGAGTGATGAAAATAACTCTATATACAAGTT-TGAAATGC-AAGGACTGGAGATGTGTATCATATATTAATAa
gi|14 : TTTA-ATGT-TG-----T-AT--TTTAATTCT-TTTG-TGCGTACATAT--------------ACCGT-A---CAGAA-CATAGCATAATTATA-CATT-GTAA--CA-G---T-TAATGTAT-T--TTT-CT-CTT------AAGAAAAATAAG--A-----------------T----TT---AC--------ATAGCAGGA-----AT------GT--T-------------TT--A----TAC-T-GTAACTATT--ATC------GT--A-TAT--TA---AT---------aaga
gi|15 : tgtgTTATATTGTTAGATTATTTAC----AAAGGGTATAT----------TT-AATTATT---AACAATTCAATATTTCTATAAC-----------TTT--------TA---ACTTGTTCAATAAAAACTGAATAAATTGAGAAACAT-TTTT----TCAATTTGCAAGAAT-AAATGTACTTTTTTT------ATAAATAAACAATAAAA---GTCAAATAATAGTCAATACtgttttcttttagttatgt
gi|16 : TTAA-ATAT-TT-----T-GTAGTC-AATTAT-TT-TCTATGTGCATAT--T-----------AAACTGA-A-CAGAG-CATAACATAATTATA-CATT-GTTA--CATA---TGTA--ATATAT--AGT-CTGCTC------ATAAGAAATACATGA-----------------T----TT---AC--------ATAGCAGGA-----AT------G
gi|17 : cAAGAATACGTTGATC------A------------TCATTCCGATTTGCTTTTGTAGTATTATATT-TTTCC----AAGGGGTAGAT----------AT-G--TGTTGAAAACAATTCAATATTTTCATAAC-----------TTTGTATAAAATTTTAACTTGTTCGATAAAACCTGAATaattaagttgtaacttttatcatgcgt
gi|18 : TAGTATTATATT-TTTCC----AAGGGGTACAT----------AT-A--TGTTGAAAATAATTCAATATTTC-ATAACTTTGTAAAACATTT--------TT---ACTTGTTCGATAAAACCTGAAT
gi|19 : tTTTTTA-ACAT-TT-----C-GT--TC-AATAAT-TT-G-TGTGTACACAT-CT-----------AAATA-A-A-CCCAA-TAAAGGATAATTGTT-CATT-GTTA--CATA---TATA
gi|2 : ttgTTTTTTG--TAT-TT-------AT--TC-AATTAT-TTTG-TGTGTACATGT--T-----------AAGAT-ATA-CAGAT-TATAATATATTTATA-CATT-GTTAAATATA---TGTAATATATAT--CCT--TGTTC------G-------------A-----------------TCAT-TTGAAAT--------ATAT---GATTTACAT------AT--T-------------TT--AGGT-T-G-T-A-----ACT--ATC------AT--CATATAATA---ATTGCTTTCTTA----TAC-----TAGTA---GTT-AT--TTT-A--CTA-----AT---AACT----------T---TC-----------AGAG--TACCTTGA------------------------TTCCATCTTGCTTTTATATTTTTAGACT-TTTCC----AAGTGGTACAT----------AT-A--TGTTGACAACGATTCAATATTTCTATAA------------ATT--------TT---ACTTGTTCAATAAAAATTGAATAAATTG-------------------------CAAGAGT-AAATGTAC---TTTTTTTTTTATAAACAAACAATAAAATATCAAGAAT-GCAGTCAATTCATGAAGAGCATTTTGTGCTCAAA-AATAATGTTCTCTAGTTTGA-TATCTTCTGAAATATTACATTTGTCCTTTAATTG--GCTATAA-GCGTGGTAAGT--ATA-TT--------------CAGTCATAAAACGGATGCGAAAT-AGTTTCTTTTCGATGTATTACAAAAAGT--ACACAATTTGGATTCTGACA-T-T-CAAATTGTATATAGTTTTGTATTGGTGAAAATAATTCTATAAACAAATT--GAATTGCAAA-GATTGGACGTGTGTATCTCTTTCGGAAAT-AATGGTTGTTTAT-ACGAAATATTCCAATCTGTAATGTCCAATACACTACCCA--CGTCCCTTTCCTACTTTTGTGATGAGGTACTTGGGCATTCAACAAAACATTTCAATAAATGAAGATAGAAAGATTGATTTA--CTTGTTTGACCATTGTTAG-TTTAGAAATATTTCGATT-TTTTGGGATACTC-----TTTTA--------TATACATTTTTTCCAATTAACTGAAATTGAAGAATGTCAGAGGCAAACAATTATTTTCAACA-ATAGGGTCTATAA-TATATAATCTCTTATg
gi|20 : TGGGAGACA--TTTTATTTTAAATTTGCAAGAAT-AAATGTACTTTTTTT------ATTAATAATCAACACAATATAGAAAAT-ACAAT
gi|3 : TTTTTA-ACAT-TT-----T-AT--GC-AATAAG-TT-G-CGTGTACACAT-CT-----------AAATA-A-A-CTGAA-CATAACATAATT-TGTCAGT-GTTA--CATA---TGTAAAATATAT--AAT-CTGCTC------G-------------AATATAATATATAATATCT----TT---AT--------ATAGTAGGA-----AT------GT--T-------------TC--A----T-C-T-A-----ATT--ATC------AT--T-TTT--AA---AT---------A----A-C-----TT--T---ATT-TT--GTC-A--TTAAAATCAT---AACT----------TG--TT-----------ACAGAATACATTTAAC------T------------ACATTGCATCTTGCTTTTACATTGTTAGATT-TGTTC----AAGGGGTACAT----------AT-A--TGTTGAAAACAATTCTATATTTCTATAAC-----------TTT--------TT---ACTTGTTCGATAAAAACTGAATAAATTGGGAGACATTTTTT----TCAATTTGCAAGAAT-AAATACACT--TTTT------ATAAATGAGCAATAAAACATATAAAAT-ACAATCAATACATGACGAGCACTTAATGCCCAAC-A-TAATGTTCTCTCGCTTTA-TTTCTTCTGAAATATTACATTTGTCCTTTAA-TG--GCTATAAAGCATAATAAGT--ATATTTTTAGAGTGCAAA--CAGTCATAGAACAAATACAATAT-AGTCTCTTTT-GAGTTGTTACAAAAGGT--ACACAATTCGATTTCTGACA-TGC-CACAC-GTATACAATTTTGCATTAGTAAAAATAATTCTATGAAGATTTT-TGAATTGCAAA-GACTGGATGTGTGTATCATTTATGAAAATAAATGGGTGTTTAT-ACAAAATTTTCCAGTCTGTAATGTCCAATACCTTACCAA--CGGCCCTTTCCCACTTTTGTTGTGAGGTACTGGGGCATTCAACAAAATATTTCAAAAATTGAGGGTAGAAGCATTGATTTACTTTTTTTTG-CAAATTTTAG-TTT-GAAATATTTTCATT-TCTT-GGATACTTTATTTTTTTA-TATTTTCTATACATTTTTTCCAA
gi|4 : gTCTTTTTG-AT-T-TTATCAGT-AT--TT-AGTTGC-AT-G-TGTTTACATA--CTCATAGCAAAAAAAAAT-A-AATTGAA-TGCAACATCATACTA-CACT-GTTA--CATA---TGTAATATATAT--AAT-CTGTTC------A------------------------------------------T--------ATAGT----------T------AT--T-------------GT--A----T-T-TTA-----ATT--ATT------TTCAT-TAT--TT---AT---------T----G-C-----TA--A---ATTGTTA-GTC-G--TTATA---ATTAAAACA----------GG--TG-----------GAAGAATAGCTTAAGC------TTAAATAATTATTATATTTCACATTGTTTTTATATTTTCATATT-TTACT----AAGGGGTGTATCGAGTATAATATTA--TGTTGAAAGTAAATCAATATTTCTATTAT-----------AGT--------TC---A-TTGGTCTATGAAA-CTGAATAAATTTAGAGACA--TTTTAT--TCAATTTGCAAG--T-AATTATACG--TTTT------ATATATAAGCAATA-------------------CAAT---------GTATCTAATG-GAAAA-A--AAT--CCTCT-GTTTAAATGTCTTCTAAAATATTACATGTATCCCTTTACTGTGGCTATTAAGCATGATAAAT--ATA-TTTTAGAGTACGTA--CAAACATATAACAAATGTAGTAC-AGTTTCTTTT-GAGATGTTACCAAAATT--GCACAATTCCATTTCTTACATT-T-TACAC-GTACATAG--TTG-ATTATTGAATATTTCTCTATAAAGAATTT-TGAATTAC-TA-TAGTGGAGGTGCGAAT
gi|5 : cttA-ATAG-TT-----T-AT--TC-AAATATCTT-A-TGGCTACATAT--T-----------AAAATAA-A-CTGAA-CAT
gi|5 : taaATG-GCTA--CATA---T-TAAAATAAACTGAAC-ATGT--------A-------------A-----------------T----AT---AT--------ATAATAGGA-----AT------GT--T-------------CA--A----A-T-T-A------TT--ATA------AT--T-AAT--TA---ATT--------G----T-C-----T--------TT-TCTAGTC-ACTTTACTT--GT---AGCT----------TG--TT-----------AAA---TACCTTGAAC------T------------ACATTCAACTTTGCTTTTATAT-----GATT-----------AG---------------------A--TATT--------TCCACTATTTCTATAAC-----------ATT--------TT---AGTTGTTCGACAAAAACTGAATACGTTAGGAGGTA--T---------AATTTGCAAGAAT-AAATGTACG--TTTT------ATAAATAAGCAATAAAACATATATAAT-ACAGTCAATACCTGATGG-------ATG-TC---------TGTTCCCTCATTCCA-GTTCTTCTGAAATATTACATTT-----TTGACTA--GCCATA-----TTACA--T--ATA-TTTTAGAATACATAAACAGTCATAGAACAGATGCACTAT-AGTTTATTTT-GATTTGTTACAAAAAGT--GCACAGTTCGGTTT--AACA-T-T-------G-ATATAATTTTGCACTAGTGAAAATAATTCTGTGAAAAATTT-TGAATTGC-AA-GGAT-GAGGTGTGTATCATTTATAAATAAAAATGGTTCTTTATAAAAAAATATTCAAGTCTGTAATATCCAATACACTACCCAATCGT--CTTTCCCACGTTTGCTGTTGATTGCTGGGGCATTCAACAgtaatatatataataggaatgttcaaattattataattaattaattgtcttttctagtcactttacttgtagcttgttaaataccttgaactacattcaactttgcttttatatgattagatatttccactatttctataacattttagttgttcgacaaaaactgaatacgttaggaggtataatttgcaagaataaatgtacgttttataaataagcaataaaacatatataatacagtcaatacctgatggatgtctgttccctcattccagttcttctgaaatattacatttttgactagccatattacatatattttagaatacataaacagtcatagaacagatgcactatagtttattttgatttgttacaaaaagtgcacagttcggtttaacattgatataattttgcactagtgaaaataattctgtgaaaaattttgaattgcaaggatgaggtgtgtatcatttataaataaaaatggttctttataaaaaaatattcaagtctgtaatatccaatacactacccaatcgtctttcccacgtttgctgttgattgctggggcattcaaca
gi|6 : taaaatagtttattcaaatatcttTTTTTTTAGATAT-TT-----TTAT--TC-AATCAT-TTTG-TGTGTACATAT--T-----------AAGAT-ATA-CAGAA-CATAACAAAAGTATA-CACG-GTTA--AATA---TGTA--ATATAT--AGG-CTGTTCATAAGAA-------------A-----------------TAAGATT---ATC-------ATAGAAGGA-----ATTTTTAGGT--TTAACTACATTGTATT--A----T-CAT-A-----CGT--ATC------GT--A-TAT--TA---TT---------A----T-CTTTTTTAT-A---GTT-AT--GTTGA--TT------AT---AAC---------------TT-----------AAATAATACCTTGAAC------T------------ACATTCCACCTTTCTTTTATATTATTAGATT-TTTCC----AAGGGGTACAC----------GT-T--TGTTGAAAATAATTCAATATTTCTATAAC-----------CTT--------TT---ACTTTTTC-----------AATAAACTGGGAGCCATTTTTT----TCAATTTTCAAGAATGAAATA-AT---TTTG------ATA
gi|7 : gTTTA-ATATGTT-----T-AT--TA-AATCAT-TTTG-TGTGTATATAT--T-----------AAAAT-ATA-CATAA-CATAACATAATCATG-CATT-GTAA--CATA---TTTAATATATA---AAT-AAGA--------A-------------A-----------------TA---TG---AT--------ATA-CAGGA-----AT------GT--T-------------TT--AAGT-T-T-T-A-----ACT--A-C------AT--TGTAT--TACC-AT---------A----T-G-----TT--ATCCATT-AT--CTT-A--CTT-----AT---AGTTATGTTGCTTATGACTT-----------AAAGAATACATTGAAC------T------------ATATTCAACCTTGCTTTTATATTATTAGATT-TTTCC----AGGGAGCA-AT----------AT-A--TGTAGAAAATAATTCAATGGTTCTAAAAC-----------CTT--------TT---ACTTGTTCAATAAACAATGAATAAATTAGAAG
gi|8 : TTAATTG--GCCACACAGCATGTTAAGA--CTA-TTTT--AGTACATA--CAGTCACAGAACAAATGTGATC---GTTTCTTTT-GAGTTGTTAC--AAAGTAAACATAATTCGAACCCTAATA-T-TCCAAAA-GGATATAGTTTTTTATGTGTGAAAATATTTATATGTAAAATTTAAAAATTGC-AATGATAAGATGTGTGCATCATTTATG-ATAT------------------AAATATTCCAATTTGTATTGTCAAATACACTACCCA--CGTCCCTTTCCCAATTTTATTGTGA
gi|9 : TTTTTA-ACAT-TG-----T-AT--TC-ACTTAT-TT-G-TG--TACATAT--T-----------AAAATAA-A-CAGAA-CATAATATGATTGTA-CATT-GTTA--TACC---TGTGATATATA---AATGCTGCTC------ATAAATGC------A-----------------T----AT---ATACATACAAATAGAAAGA-----AT------GT--T-------------TCGAA----T-CTT-A-----ATT--ATTATTAGGAT--T-CAT--TG---AT---------ACATTT-CAGCT-TA--A---ATT-TA--AT--A--TCT-----AT---AACT----------TG--TT-----------AAATAACATTTTGAACTAATCAT------------ACATTCAAACTTGCATTTATATTATTAGATC-TTTACACTTAATGTGTATAT----------AC-A--Tacaaactaccggtttttttcaaatatttcaccaacaattagt
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 111 33333333333333 11111 111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2222222222222222222 1111 1111111111 111111111111 11111111 1 11111 11 111111 111111111 222222222 1 1 1 11 222 1 1 1 1 1111 11 1 2222 11 1 4444444 1 1 33 2222 222 1 11 1 22222
lowQualScore : 3 3 11111 3 44 3 1 3 444 11111111111111 11111 1 3 1 3 3 44 555 3 0 333 55 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 6666666666666666666 0 3 0 0000 2 4444444444 3 44 888888888888 33333333 666 2 3 0 0 0 33333 33 222222 1 5 1 0 5 0 3 0 3 1 1 999999999 5 1 8 1 3 3 77 22 77 5 5 1 1 2 77 1 1 88 5 1 77 5 5 777777777 4 5 1 77 1 1 4444 0 1 0 0 8 11 1 777 0 9 0 6 11 0 0 3 6666 0 44 6 44 2 8888 88 3 4 3333333 3 3 1 1 00 3333 1 1 2 111 1 5 77 5 1 1 77777
lowQualScore : . . ..... . .. . . . ... .............. ..... . . . . . .. ... . . ... .. .................................................................................................................................................................................................................................................. . ................... . . . .... . .......... . .. ............ ........ ... . . . . . ..... .. ...... . . . . . . . . . . . ......... . . . . . . .. .. .. . . . . . .. . . .. . . .. . . ......... . . . .. . . .... . . . . . .. . ... . . . . .. . . . .... . .. . .. . .... .. . . ....... . . . . .. .... . . . ... . . .. . . . .....
lowQualScore : 3 3 77777 3 66 3 2 3 222 33333333333333 66666 0 3 7 6 3 66 888 8 1 555 00 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 5 0000000000000000000 3 1 2 4444 3 6666666666 3 66 333333333333 22222222 444 3 1 9 0 1 99999 88 666666 4 3 6 3 7 4 5 6 2 4 0 888888888 0 0 0 0 2 7 99 99 99 7 0 4 4 1 99 4 7 00 7 4 99 4 7 777777777 9 3 7 44 4 4 3333 7 7 6 6 0 00 0 000 0 2 0 5 88 0 8 2 2222 8 00 7 77 0 3333 33 3 7 3333333 3 3 0 0 55 5555 0 0 5 555 0 5 55 5 0 0 55555
consensus : TTTTTTTA-ATAT-TT-----T-AT--TC-AATTAT-TT-G-TGTGTACATAT-CT-----------AAAAT-A-A-CNGAA-CATAACATAATTATA-CATT-GTTA--CATA---TGTAATATATAT--AAT-CTGCTC------A-------------A-----------------T----TT---AT--------ATAGCAGGA-----AT------GT--T-------------TT--A----T-C-T-A-----ATT--ATC------GT--T-TAT--TA---AT---------A----T-C-----TA--A---ATT-TT--GTC-A--TTA-----AT---AACT----------TG--TT-----------AAAGAATACCTTGAAC------T------------ACATTCCACCTTGCTTTTATATTATTAGATT-TTTCC----AAGGGGTACAT----------AT-A--TGTTGAAAACAATTCAATATTTCTATAAC-----------NTT--------TT---ACTTGTTCGATAAAAACTGAATAAATTGGGAGACA-TTTT---TTCAATTTGCAAGAATAAATGTAC--TTTTT-----ATAAATAAGCAATAAAACATATAAAAT-ACAGTCAATACATGACGAGCACTTAATGCCCAANA-TAATGTTCTCTCGTTTNA-TTTCTTCTGAAATATTACATTTGTCCTTTAACTG--GCCATAAAGCATGATAAGT--ATA-TTTTAGAGTACATA--CAGTCATAGAACAGATGCGATAT-AGTTTCTTTT-GAGTTGTTACAAAAAGT--GCACAATTCGGTTTCTGACA-T-T-CACAC-GTATATAGTTTTGCATTAGTGAAAATAATTCTATGAAGAATTT-TGAATTGC-AA-GANTGGAGGTGTGTATCATTTATGAATATAAATGGTTGTTTAT-ACAAAATATTCCAGTCTGTAATGTCCAATACACTACCCA--CGTCCCTTTCCCACTTTTGTTGTGAGGTACTGGGGCATTCAACAAAATATTTCAAAAANTGAGGGTAGAAAGATTGATTTA--TTTTTTTG-CAATTTTTAG-TTTGGAAATATTTTTNTT-TTTTNGGATACTCTATTTTTTTACTATTTTTTATACATTTTTTCCAATTAACTGGAATTGCAGAATATCAGACCCAAA----TACTTT--ACA-ANAG-------AA-TACAT-ATCTCATATTTTNCGCATNAACTTTCAGAATGCCAGAAGCGGACANTTATCANCCGCTATATCGTTTNCGAAGTATATTCCCTTGTTACACATGGCCTTATAAAANACANTATCATAATTATCTTTAT
Reference ( family-65 ) : TTTTTTTA-ATAT-TT-----T-AT--TC-AATTAT-TT-G-TGTGTACATAT-CT-----------AAAAT-A-A-CNGAA-CATAACATAATTATA-CATT-GTTA--CATA---TGTAATATATAT--AAT-CTGCTC------A-------------A-----------------T----TT---AT--------ATAGCAGGA-----AT------GT--T-------------TT--A----T-C-T-A-----ATT--ATC------GT--T-TAT--TA---AT---------A----T-C-----TA--A---ATT-TT--GTC-A--TTA-----AT---AACT----------TG--TT-----------AAAGAATACCTTGAAC------T------------ACATTCCACCTTGCTTTTATATTATTAGATT-TTTCC----AAGGGGTACAT----------AT-A--TGTTGAAAACAATTCAATATTTCTATAAC-----------NTT--------TT---ACTTGTTCGATAAAAACTGAATAAATTGGGAGACA-TTTT---TTCAATTTGCAAGAATAAATGTAC--TTTTT-----ATAAATAAGCAATAAAACATATAAAAT-ACAGTCAATACATGACGAGCACTTAATGCTCAAAA-TAATGTTCTCTCGTTTNA-TTTCTTCTGAAATATTACATTTGTCCTTTAACTG--GCCATAAAGCATGATAAGT--ATA-TTTTAGAGTACATA--CAGTCATAGAACAGATGCGATAT-AGTTTCTTTT-GAGTTGTTACAAAAAGT--GCACAATTCGGTTTCTGACA-T-T-CACAC-GTATATAGTTTTGCATTAGTGAAAATAATTCTATGAAGAATTT-TGAATTGC-AA-GANTGGAGGTGTGTATCATTTATGAATATAAATGGTTGTTTAT-ACAAAATATTCCAGTCTGTAATGTCCAATACACTACCCA--CGTCCCTTTCCCACTTTTGTTGTGAGGTACTGGGGCATTCAACAAAATATTTCAAAAANTGAGGGTAGAAAGATTGATTTA--TTTTTTTG-CAATTTTTAG-TTTGGAAATATTTTTNTT-TTTTNGGATACTCTATTTTTTTACTATTTTTTATACATTTTTTCCAATTAACTGGAATTGCAGAATATCAGACCCAAA----TACTTT--ACA-AAAG-------AA-TACAT-ATCTCATATTTTNCGCATNAACTTTCAGAATGCCAGAAGCGGACANTTATCANCCGCTATATCGTTTNCGAAGTATATTCCCTTGTTACACATGGCCTTATAAAANACANTATCATAATTATCTTTAT
gi|1 : TTTTTTTA-ACAT-TT-----T-AT--TC-AATAAT-TT-G-TGTGTACACAT-CT-----------AAAAC-A-A-CTGAA-CGTAACATAATTGTA-CATT-GTTA--CATA---TGTAATATATAT--AAT-CTGCT---------------------A-----------------T----TT---AT--------ATAATATGA-----AT------GT--T-------------TT--A----T-C-T-G-----ATT--ATC------GT--T-TAT--AA---AT---------A----T-C-----TA--A---ATT-TT--GTC-A--TTA-----AA---AACT----------TG--TT-----------AAAGAATACATTTAAC------T------------AGATTCCACCTTGCTTTTATATTGTTAGATT-TTTTC----AAGAGGTACTT----------AT-A--TGTTGAAAACAATTCTATATT-CTATAAC-----------ATT--------TT---ACTTGTTCGATACAAACTGAATAAATTGAGAGACA-TTTT---T-CAATTTGCAAGAATAAATATAC--TTTT------ATAAATGAGCAATAAAACATATAAAAT-ACAATCAATACATGGCGAGCACTTAATGTCCAACA-CAATGTTCTCTCGCTTTA-TTTCTTCTGAAATATTACATTTGTCCTTTAACTG--GCTATAAAGCATAATAAGTTCATT-TTTT-GAGTGCATA--CAGTCATAGAACAAATGCAATAT-AGTTTCTTTT-GAGTTGTTACAAAAGGT--ACACAATTTGGTTTCTGACA-TAC-CACAC-GTATACAATTTTGCATTAGTAAAAATAATTATCTGAAGAATTT-TGAATTGC-AA-G----GAGGTGTGTATCATTTATGAATATAAATGGTTGTTTAT-ACAAAATAATCCAGTCTGTAATGTCCAATACATTACCAA--CGTCCCTTTCCCACTTTTGTTGTGAAGTACTGGGGCATTCAACAAAATATTTCAAAAATTGAGTGTAGAAAGATTGATTT---TTTTTTTG-CAATTTTTAG-TTCGGAAATATTTTTCAT-TTTTAGGATACTCTATTTTTTTACTATTTTTTATACATCTTTTCCAATTAGCTGGAATTGCCG-ATATCAACCCCAAA----TACTTT--ACACAAAG-------AA-TACAT-ATCTCATATTTTTCGCATCAACTTTC-GAATGTCAGAAGCAAACAGTTATCATCCGCTATATCGTTTACGAAGTATATTCCCTTGTTACACATAGCCTTATAAAAGACAGTATCATAATTATTTTTAT
gi|10 : AATAAAGATAGAAAGATTGATTTAG-TTTTTTTT-C--TTTTTAGGTTTGAAAATATTTTTTTTCTTTTTGGATATTCTATTTATTTGCCAATTTTTATACA-------------A-TGGAATTGCAGA-TATTA-ACCCAAA----TACTTT--ACA-AGAG-------AAGTGCAT-ATCTCACATTTTGCACATAAACTTTCA-AATACCAG----GGACACTTATTAACAACT---TCGTTTTTAAAATATATTCCC-TATTACACATG--TTTAT-AAACACATTATTA-----ATCTTTATa
gi|11 : attTTTTTA-ATAT-GTA----T-AT--TC-AATCAT-TT---TGTGTGCATATACT-----------ATTAT-A-T-TTGGAGCATTACATAATTATA-CATTTGTAA--TATAGAGTCTAAT-TATAGGAAAT-ATAT--------G-------------A-----------------T----TT---AC--------ATAGCAGGA-----AT------GCTGT-------------TT--ACAGTT-G-T-A-----ACTACATC------GTA-G-TAT--CATACAC---------A----T-A-----TA--A---ATTGCT--TTC-G--T-------AT---AGTTG---------TG--TTACTTACAACTAAAAGAATACCTGAAAC------T------------ACAATCCACCTTGCATTTATATTATTCGATT-TTTg
gi|12 : ttgATAACTTGAAG------C------------ACATTCAACTTTGCTTTGATATTATTAGATT-TTTTCT---AAGGGGTACAT----------AT-A--TGTTGAAAACAATTCAATATTTCTGTAAC-----------GTT--------GT---Ataag
gi|13 : acctttcttatagttgttttacttataacttgattccacattacttatagttgtttttacttataatttgaactacattccacctttcttacagttattttactt--GCCATGAAGCATGATAAGT--CAA-TT--ACAGTCCATA--CAGTCATAAAACAGATGCAA-ACAAGTGTCTTTC-GAGTTGTTGCAAAAATT--GCATAATTCGG-TTCTGACA-T-T--------------GTTTTGGAGTGATGAAAATAACTCTATATACAAGTT-TGAAATGC-AAGGACTGGAGATGTGTATCATATATTAATAa
gi|14 : TTTA-ATGT-TG-----T-AT--TTTAATTCT-TTTG-TGCGTACATAT--------------ACCGT-A---CAGAA-CATAGCATAATTATA-CATT-GTAA--CA-G---T-TAATGTAT-T--TTT-CT-CTT------AAGAAAAATAAG--A-----------------T----TT---AC--------ATAGCAGGA-----AT------GT--T-------------TT--A----TAC-T-GTAACTATT--ATC------GT--A-TAT--TA---AT---------aaga
gi|15 : tgtgTTATATTGTTAGATTATTTAC----AAAGGGTATAT----------TT-AATTATT---AACAATTCAATATTTCTATAAC-----------TTT--------TA---ACTTGTTCAATAAAAACTGAATAAATTGAGAAACA-TTTT---TTCAATTTGCAAGAATAAATGTACTTTTTTT-----ATAAATAAACAATAAAA---GTCAAATAATAGTCAATACtgttttcttttagttatgt
gi|16 : TTAA-ATAT-TT-----T-GTAGTC-AATTAT-TT-TCTATGTGCATAT--T-----------AAACTGA-A-CAGAG-CATAACATAATTATA-CATT-GTTA--CATA---TGTA--ATATAT--AGT-CTGCTC------ATAAGAAATACATGA-----------------T----TT---AC--------ATAGCAGGA-----AT------G
gi|17 : cAAGAATACGTTGATC------A------------TCATTCCGATTTGCTTTTGTAGTATTATATT-TTTCC----AAGGGGTAGAT----------AT-G--TGTTGAAAACAATTCAATATTTTCATAAC-----------TTTGTATAAAATTTTAACTTGTTCGATAAAACCTGAATaattaagttgtaacttttatcatgcgt
gi|18 : TAGTATTATATT-TTTCC----AAGGGGTACAT----------AT-A--TGTTGAAAATAATTCAATATTTC-ATAACTTTGTAAAACATTT--------TT---ACTTGTTCGATAAAACCTGAAT
gi|19 : tTTTTTA-ACAT-TT-----C-GT--TC-AATAAT-TT-G-TGTGTACACAT-CT-----------AAATA-A-A-CCCAA-TAAAGGATAATTGTT-CATT-GTTA--CATA---TATA
gi|2 : ttgTTTTTTG--TAT-TT-------AT--TC-AATTAT-TTTG-TGTGTACATGT--T-----------AAGAT-ATA-CAGAT-TATAATATATTTATA-CATT-GTTAAATATA---TGTAATATATAT--CCT--TGTTC------G-------------A-----------------TCAT-TTGAAAT--------ATAT---GATTTACAT------AT--T-------------TT--AGGT-T-G-T-A-----ACT--ATC------AT--CATATAATA---ATTGCTTTCTTA----TAC-----TAGTA---GTT-AT--TTT-A--CTA-----AT---AACT----------T---TC-----------AGAG--TACCTTGA------------------------TTCCATCTTGCTTTTATATTTTTAGACT-TTTCC----AAGTGGTACAT----------AT-A--TGTTGACAACGATTCAATATTTCTATAA------------ATT--------TT---ACTTGTTCAATAAAAATTGAATAAATTG------------------------CAAGAGTAAATGTAC--TTTTTTTTTTATAAACAAACAATAAAATATCAAGAAT-GCAGTCAATTCATGAAGAGCATTTTGTGCTCAAAAATAATGTTCTCTAGTTTGA-TATCTTCTGAAATATTACATTTGTCCTTTAATTG--GCTATAA-GCGTGGTAAGT--ATA-TT--------------CAGTCATAAAACGGATGCGAAAT-AGTTTCTTTTCGATGTATTACAAAAAGT--ACACAATTTGGATTCTGACA-T-T-CAAATTGTATATAGTTTTGTATTGGTGAAAATAATTCTATAAACAAATT--GAATTGCAAA-GATTGGACGTGTGTATCTCTTTCGGAAAT-AATGGTTGTTTAT-ACGAAATATTCCAATCTGTAATGTCCAATACACTACCCA--CGTCCCTTTCCTACTTTTGTGATGAGGTACTTGGGCATTCAACAAAACATTTCAATAAATGAAGATAGAAAGATTGATTTA--CTTGTTTGACCATTGTTAG-TTTAGAAATATTTCGATT-TTTTGGGATACTC-----TTTTA--------TATACATTTTTTCCAATTAACTGAAATTGAAGAATGTCAGAGGCAAACAATTATTTTCAACA-ATAGGGTCTATAA-TATATAATCTCTTATg
gi|20 : TGGGAGACA-TTTTATTTTAAATTTGCAAGAATAAATGTACTTTTTTT-----ATTAATAATCAACACAATATAGAAAAT-ACAAT
gi|3 : TTTTTA-ACAT-TT-----T-AT--GC-AATAAG-TT-G-CGTGTACACAT-CT-----------AAATA-A-A-CTGAA-CATAACATAATT-TGTCAGT-GTTA--CATA---TGTAAAATATAT--AAT-CTGCTC------G-------------AATATAATATATAATATCT----TT---AT--------ATAGTAGGA-----AT------GT--T-------------TC--A----T-C-T-A-----ATT--ATC------AT--T-TTT--AA---AT---------A----A-C-----TT--T---ATT-TT--GTC-A--TTAAAATCAT---AACT----------TG--TT-----------ACAGAATACATTTAAC------T------------ACATTGCATCTTGCTTTTACATTGTTAGATT-TGTTC----AAGGGGTACAT----------AT-A--TGTTGAAAACAATTCTATATTTCTATAAC-----------TTT--------TT---ACTTGTTCGATAAAAACTGAATAAATTGGGAGACATTTTT---TTCAATTTGCAAGAATAAATACAC--TTTTT-----ATAAATGAGCAATAAAACATATAAAAT-ACAATCAATACATGACGAGCACTTAATGCCCAACA-TAATGTTCTCTCGCTTTA-TTTCTTCTGAAATATTACATTTGTCCTTTAA-TG--GCTATAAAGCATAATAAGT--ATATTTTTAGAGTGCAAA--CAGTCATAGAACAAATACAATAT-AGTCTCTTTT-GAGTTGTTACAAAAGGT--ACACAATTCGATTTCTGACA-TGC-CACAC-GTATACAATTTTGCATTAGTAAAAATAATTCTATGAAGATTTT-TGAATTGCAAA-GACTGGATGTGTGTATCATTTATGAAAATAAATGGGTGTTTAT-ACAAAATTTTCCAGTCTGTAATGTCCAATACCTTACCAA--CGGCCCTTTCCCACTTTTGTTGTGAGGTACTGGGGCATTCAACAAAATATTTCAAAAATTGAGGGTAGAAGCATTGATTTACTTTTTTTTG-CAAATTTTAG-TTT-GAAATATTTTCATT-TCTT-GGATACTTTATTTTTTTA-TATTTTCTATACATTTTTTCCAA
gi|4 : gTCTTTTTG-AT-T-TTATCAGT-AT--TT-AGTTGC-AT-G-TGTTTACATA--CTCATAGCAAAAAAAAAT-A-AATTGAA-TGCAACATCATACTA-CACT-GTTA--CATA---TGTAATATATAT--AAT-CTGTTC------A------------------------------------------T--------ATAGT----------T------AT--T-------------GT--A----T-T-TTA-----ATT--ATT------TTCAT-TAT--TT---AT---------T----G-C-----TA--A---ATTGTTA-GTC-G--TTATA---ATTAAAACA----------GG--TG-----------GAAGAATAGCTTAAGC------TTAAATAATTATTATATTTCACATTGTTTTTATATTTTCATATT-TTACT----AAGGGGTGTATCGAGTATAATATTA--TGTTGAAAGTAAATCAATATTTCTATTAT-----------AGT--------TC---A-TTGGTCTATGAAA-CTGAATAAATTTAGAGACA-TTTTA--TTCAATTTGCAAG--TAATTATAC--GTTTT-----ATATATAAGCAATA-------------------CAAT---------GTATCTAATGG--AAAA-AAAT--CCTCT-GTTTAAATGTCTTCTAAAATATTACATGTATCCCTTTACTGTGGCTATTAAGCATGATAAAT--ATA-TTTTAGAGTACGTA--CAAACATATAACAAATGTAGTAC-AGTTTCTTTT-GAGATGTTACCAAAATT--GCACAATTCCATTTCTTACATT-T-TACAC-GTACATAG--TTG-ATTATTGAATATTTCTCTATAAAGAATTT-TGAATTAC-TA-TAGTGGAGGTGCGAAT
gi|5 : cttA-ATAG-TT-----T-AT--TC-AAATATCTT-A-TGGCTACATAT--T-----------AAAATAA-A-CTGAA-CAT
gi|5 : taaATG-GCTA--CATA---T-TAAAATAAACTGAAC-ATGT--------A-------------A-----------------T----AT---AT--------ATAATAGGA-----AT------GT--T-------------CA--A----A-T-T-A------TT--ATA------AT--T-AAT--TA---ATT--------G----T-C-----T--------TT-TCTAGTC-ACTTTACTT--GT---AGCT----------TG--TT-----------AAA---TACCTTGAAC------T------------ACATTCAACTTTGCTTTTATAT-----GATT-----------AG---------------------A--TATT--------TCCACTATTTCTATAAC-----------ATT--------TT---AGTTGTTCGACAAAAACTGAATACGTTAGGAGGTA-T---------AATTTGCAAGAATAAATGTAC--GTTTT-----ATAAATAAGCAATAAAACATATATAAT-ACAGTCAATACCTGATGG-------ATG-TC--------TGTTCCCTCATTCCA-GTTCTTCTGAAATATTACATTT-----TTGACTA--GCCATA-----TTACA--T--ATA-TTTTAGAATACATAAACAGTCATAGAACAGATGCACTAT-AGTTTATTTT-GATTTGTTACAAAAAGT--GCACAGTTCGGTTT--AACA-T-T-------G-ATATAATTTTGCACTAGTGAAAATAATTCTGTGAAAAATTT-TGAATTGC-AA-GGAT-GAGGTGTGTATCATTTATAAATAAAAATGGTTCTTTATAAAAAAATATTCAAGTCTGTAATATCCAATACACTACCCAATCGT--CTTTCCCACGTTTGCTGTTGATTGCTGGGGCATTCAACAgtaatatatataataggaatgttcaaattattataattaattaattgtcttttctagtcactttacttgtagcttgttaaataccttgaactacattcaactttgcttttatatgattagatatttccactatttctataacattttagttgttcgacaaaaactgaatacgttaggaggtataatttgcaagaataaatgtacgttttataaataagcaataaaacatatataatacagtcaatacctgatggatgtctgttccctcattccagttcttctgaaatattacatttttgactagccatattacatatattttagaatacataaacagtcatagaacagatgcactatagtttattttgatttgttacaaaaagtgcacagttcggtttaacattgatataattttgcactagtgaaaataattctgtgaaaaattttgaattgcaaggatgaggtgtgtatcatttataaataaaaatggttctttataaaaaaatattcaagtctgtaatatccaatacactacccaatcgtctttcccacgtttgctgttgattgctggggcattcaaca
gi|6 : taaaatagtttattcaaatatcttTTTTTTTAGATAT-TT-----TTAT--TC-AATCAT-TTTG-TGTGTACATAT--T-----------AAGAT-ATA-CAGAA-CATAACAAAAGTATA-CACG-GTTA--AATA---TGTA--ATATAT--AGG-CTGTTCATAAGAA-------------A-----------------TAAGATT---ATC-------ATAGAAGGA-----ATTTTTAGGT--TTAACTACATTGTATT--A----T-CAT-A-----CGT--ATC------GT--A-TAT--TA---TT---------A----T-CTTTTTTAT-A---GTT-AT--GTTGA--TT------AT---AAC---------------TT-----------AAATAATACCTTGAAC------T------------ACATTCCACCTTTCTTTTATATTATTAGATT-TTTCC----AAGGGGTACAC----------GT-T--TGTTGAAAATAATTCAATATTTCTATAAC-----------CTT--------TT---ACTTTTTC-----------AATAAACTGGGAGCCATTTTT---TTCAATTTTCAAGAATGAA-ATAA--TTTTG-----ATA
gi|7 : gTTTA-ATATGTT-----T-AT--TA-AATCAT-TTTG-TGTGTATATAT--T-----------AAAAT-ATA-CATAA-CATAACATAATCATG-CATT-GTAA--CATA---TTTAATATATA---AAT-AAGA--------A-------------A-----------------TA---TG---AT--------ATA-CAGGA-----AT------GT--T-------------TT--AAGT-T-T-T-A-----ACT--A-C------AT--TGTAT--TACC-AT---------A----T-G-----TT--ATCCATT-AT--CTT-A--CTT-----AT---AGTTATGTTGCTTATGACTT-----------AAAGAATACATTGAAC------T------------ATATTCAACCTTGCTTTTATATTATTAGATT-TTTCC----AGGGAGCA-AT----------AT-A--TGTAGAAAATAATTCAATGGTTCTAAAAC-----------CTT--------TT---ACTTGTTCAATAAACAATGAATAAATTAGAAG
gi|8 : TTAATTG--GCCACACAGCATGTTAAGA--CTA-TTTTAG--TACATA--CAGTCACAGAACAAATGTGATC---GTTTCTTTT-GAGTTGTTAC--AAAGTAAACATAATTCGAACCCTAATA-T-TCCAAAA-GGATATAGTTTTTTATGTGTGAAAATATTTATATGTAAAATTTAAAAATTGC-AATGATAAGATGTGTGCATCATTTATG-ATAT------------------AAATATTCCAATTTGTATTGTCAAATACACTACCCA--CGTCCCTTTCCCAATTTTATTGTGA
gi|9 : TTTTTA-ACAT-TG-----T-AT--TC-ACTTAT-TT-G-TG--TACATAT--T-----------AAAATAA-A-CAGAA-CATAATATGATTGTA-CATT-GTTA--TACC---TGTGATATATA---AATGCTGCTC------ATAAATGC------A-----------------T----AT---ATACATACAAATAGAAAGA-----AT------GT--T-------------TCGAA----T-CTT-A-----ATT--ATTATTAGGAT--T-CAT--TG---AT---------ACATTT-CAGCT-TA--A---ATT-TA--AT--A--TCT-----AT---AACT----------TG--TT-----------AAATAACATTTTGAACTAATCAT------------ACATTCAAACTTGCATTTATATTATTAGATC-TTTACACTTAATGTGTATAT----------AC-A--Tacaaactaccggtttttttcaaatatttcaccaacaattagt
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 111 33333333333333 11111 111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2222222222222222222 1111 1111111111 111111111111 11111111 1 11111 11 111111 111111111 222222222 1 1 1 11 222 1 1 1 1 1111 11 1 2222 11 1 4444444 1 1 33 2222 222 1 11 1 22222
lowQualScore : 3 3 11111 3 44 3 1 3 444 11111111111111 11111 1 3 1 3 3 44 555 3 0 333 55 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 6666666666666666666 0 3 0 0000 2 4444444444 3 44 888888888888 33333333 666 2 3 0 0 0 33333 33 222222 1 5 1 0 5 0 3 0 3 1 1 222222222 5 1 8 1 3 3 77 22 77 5 5 1 1 2 77 1 1 88 5 1 77 5 5 777777777 4 5 1 77 1 1 4444 0 1 0 0 8 11 1 777 0 9 0 6 11 0 0 3 6666 0 44 6 44 2 8888 88 3 1 3333333 3 3 1 1 00 3333 1 1 2 111 1 5 77 5 1 1 77777
lowQualScore : . . ..... . .. . . . ... .............. ..... . . . . . .. ... . . ... .. .................................................................................................................................................................................................................................................. . ................... . . . .... . .......... . .. ............ ........ ... . . . . . ..... .. ...... . . . . . . . . . . . ......... . . . . . . .. .. .. . . . . . .. . . .. . . .. . . ......... . . . .. . . .... . . . . . .. . ... . . . . .. . . . .... . .. . .. . .... .. . . ....... . . . . .. .... . . . ... . . .. . . . .....
lowQualScore : 3 3 77777 3 66 3 2 3 222 33333333333333 66666 0 3 7 6 3 66 888 8 1 555 00 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 5 0000000000000000000 3 1 2 4444 3 6666666666 3 66 333333333333 22222222 444 3 1 9 0 1 99999 88 666666 4 3 6 3 7 4 5 6 2 4 0 888888888 0 0 0 0 2 7 99 99 99 7 0 4 4 1 99 4 7 00 7 4 99 4 7 777777777 9 3 7 44 4 4 3333 7 7 6 6 0 00 0 000 0 2 0 5 88 0 8 2 2222 8 00 7 77 0 3333 33 3 0 3333333 3 3 0 0 55 5555 0 0 5 555 0 5 55 5 0 0 55555
consensus : TTTTTTTA-ATAT-TT-----T-AT--TC-AATTAT-TT-G-TGTGTACATAT-CT-----------AAAAT-A-A-CNGAA-CATAACATAATTATA-CATT-GTTA--CATA---TGTAATATATAT--AAT-CTGCTC------A-------------A-----------------T----TT---AT--------ATAGCAGGA-----AT------GT--T-------------TT--A----T-C-T-A-----ATT--ATC------GT--T-TAT--TA---AT---------A----T-C-----TA--A---ATT-TT--GTC-A--TTA-----AT---AACT----------TG--TT-----------AAAGAATACCTTGAAC------T------------ACATTCCACCTTGCTTTTATATTATTAGATT-TTTCC----AAGGGGTACAT----------AT-A--TGTTGAAAACAATTCAATATTTCTATAAC-----------NTT--------TT---ACTTGTTCGATAAAAACTGAATAAATTGGGAGACA-TTTT---TTCAATTTGCAAGAATAAATGTAC--TTTTT-----ATAAATAAGCAATAAAACATATAAAAT-ACAGTCAATACATGACGAGCACTTAATGCCCAANA-TAATGTTCTCTCGTTTNA-TTTCTTCTGAAATATTACATTTGTCCTTTAACTG--GCCATAAAGCATGATAAGT--ATA-TTTTAGAGTACATA--CAGTCATAGAACAGATGCGATAT-AGTTTCTTTT-GAGTTGTTACAAAAAGT--GCACAATTCGGTTTCTGACA-T-T-CACAC-GTATATAGTTTTGCATTAGTGAAAATAATTCTATGAAGAATTT-TGAATTGC-AA-GANTGGAGGTGTGTATCATTTATGAATATAAATGGTTGTTTAT-ACAAAATATTCCAGTCTGTAATGTCCAATACACTACCCA--CGTCCCTTTCCCACTTTTGTTGTGAGGTACTGGGGCATTCAACAAAATATTTCAAAAANTGAGGGTAGAAAGATTGATTTA--TTTTTTTG-CAATTTTTAG-TTTGGAAATATTTTTNTT-TTTTNGGATACTCTATTTTTTTACTATTTTTTATACATTTTTTCCAATTAACTGGAATTGCAGAATATCAGACCCAAA----TACTTT--ACA-ANAG-------AA-TACAT-ATCTCATATTTTNCGCATNAACTTTCAGAATGCCAGAAGCGGACANTTATCANCCGCTATATCGTTTNCGAAGTATATTCCCTTGTTACACATGGCCTTATAAAANACANTATCATAATTATCTTTAT
Reference ( family-65 ) : TTTTTTTA-ATAT-TT-----T-AT--TC-AATTAT-TT-G-TGTGTACATAT-CT-----------AAAAT-A-A-CNGAA-CATAACATAATTATA-CATT-GTTA--CATA---TGTAATATATAT--AAT-CTGCTC------A-------------A-----------------T----TT---AT--------ATAGCAGGA-----AT------GT--T-------------TT--A----T-C-T-A-----ATT--ATC------GT--T-TAT--TA---AT---------A----T-C-----TA--A---ATT-TT--GTC-A--TTA-----AT---AACT----------TG--TT-----------AAAGAATACCTTGAAC------T------------ACATTCCACCTTGCTTTTATATTATTAGATT-TTTCC----AAGGGGTACAT----------AT-A--TGTTGAAAACAATTCAATATTTCTATAAC-----------NTT--------TT---ACTTGTTCGATAAAAACTGAATAAATTGGGAGACA-TTTT---TTCAATTTGCAAGAATAAATGTAC--TTTTT-----ATAAATAAGCAATAAAACATATAAAAT-ACAGTCAATACATGACGAGCACTTAATGCCCAANA-TAATGTTCTCTCGTTTNA-TTTCTTCTGAAATATTACATTTGTCCTTTAACTG--GCCATAAAGCATGATAAGT--ATA-TTTTAGAGTACATA--CAGTCATAGAACAGATGCGATAT-AGTTTCTTTT-GAGTTGTTACAAAAAGT--GCACAATTCGGTTTCTGACA-T-T-CACAC-GTATATAGTTTTGCATTAGTGAAAATAATTCTATGAAGAATTT-TGAATTGC-AA-GANTGGAGGTGTGTATCATTTATGAATATAAATGGTTGTTTAT-ACAAAATATTCCAGTCTGTAATGTCCAATACACTACCCA--CGTCCCTTTCCCACTTTTGTTGTGAGGTACTGGGGCATTCAACAAAATATTTCAAAAANTGAGGGTAGAAAGATTGATTTA--TTTTTTTG-CAATTTTTAG-TTTGGAAATATTTTTNTT-TTTTNGGATACTCTATTTTTTTACTATTTTTTATACATTTTTTCCAATTAACTGGAATTGCAGAATATCAGACCCAAA----TACTTT--ACA-ANAG-------AA-TACAT-ATCTCATATTTTNCGCATNAACTTTCAGAATGCCAGAAGCGGACANTTATCANCCGCTATATCGTTTNCGAAGTATATTCCCTTGTTACACATGGCCTTATAAAANACANTATCATAATTATCTTTAT
gi|1 : TTTTTTTA-ACAT-TT-----T-AT--TC-AATAAT-TT-G-TGTGTACACAT-CT-----------AAAAC-A-A-CTGAA-CGTAACATAATTGTA-CATT-GTTA--CATA---TGTAATATATAT--AAT-CTGCT---------------------A-----------------T----TT---AT--------ATAATATGA-----AT------GT--T-------------TT--A----T-C-T-G-----ATT--ATC------GT--T-TAT--AA---AT---------A----T-C-----TA--A---ATT-TT--GTC-A--TTA-----AA---AACT----------TG--TT-----------AAAGAATACATTTAAC------T------------AGATTCCACCTTGCTTTTATATTGTTAGATT-TTTTC----AAGAGGTACTT----------AT-A--TGTTGAAAACAATTCTATATT-CTATAAC-----------ATT--------TT---ACTTGTTCGATACAAACTGAATAAATTGAGAGACA-TTTT---T-CAATTTGCAAGAATAAATATAC--TTTT------ATAAATGAGCAATAAAACATATAAAAT-ACAATCAATACATGGCGAGCACTTAATGTCCAACA-CAATGTTCTCTCGCTTTA-TTTCTTCTGAAATATTACATTTGTCCTTTAACTG--GCTATAAAGCATAATAAGTTCATT-TTTT-GAGTGCATA--CAGTCATAGAACAAATGCAATAT-AGTTTCTTTT-GAGTTGTTACAAAAGGT--ACACAATTTGGTTTCTGACA-TAC-CACAC-GTATACAATTTTGCATTAGTAAAAATAATTATCTGAAGAATTT-TGAATTGC-AA-G----GAGGTGTGTATCATTTATGAATATAAATGGTTGTTTAT-ACAAAATAATCCAGTCTGTAATGTCCAATACATTACCAA--CGTCCCTTTCCCACTTTTGTTGTGAAGTACTGGGGCATTCAACAAAATATTTCAAAAATTGAGTGTAGAAAGATTGATTT---TTTTTTTG-CAATTTTTAG-TTCGGAAATATTTTTCAT-TTTTAGGATACTCTATTTTTTTACTATTTTTTATACATCTTTTCCAATTAGCTGGAATTGCCG-ATATCAACCCCAAA----TACTTT--ACACAAAG-------AA-TACAT-ATCTCATATTTTTCGCATCAACTTTC-GAATGTCAGAAGCAAACAGTTATCATCCGCTATATCGTTTACGAAGTATATTCCCTTGTTACACATAGCCTTATAAAAGACAGTATCATAATTATTTTTAT
gi|10 : AATAAAGATAGAAAGATTGATTTAG-TTTTTTTT-C--TTTTTAGGTTTGAAAATATTTTTTTTCTTTTTGGATATTCTATTTATTTGCCAATTTTTATACA-------------A-TGGAATTGCAGA-TATTA-ACCCAAA----TACTTT--ACA-AGAG-------AAGTGCAT-ATCTCACATTTTGCACATAAACTTTCA-AATACCAG----GGACACTTATTAACAACT---TCGTTTTTAAAATATATTCCC-TATTACACATG--TTTAT-AAACACATTATTA-----ATCTTTATa
gi|11 : attTTTTTA-ATAT-GTA----T-AT--TC-AATCAT-TT---TGTGTGCATATACT-----------ATTAT-A-T-TTGGAGCATTACATAATTATA-CATTTGTAA--TATAGAGTCTAAT-TATAGGAAAT-ATAT--------G-------------A-----------------T----TT---AC--------ATAGCAGGA-----AT------GCTGT-------------TT--ACAGTT-G-T-A-----ACTACATC------GTA-G-TAT--CATACAC---------A----T-A-----TA--A---ATTGCT--TTC-G--T-------AT---AGTTG---------TG--TTACTTACAACTAAAAGAATACCTGAAAC------T------------ACAATCCACCTTGCATTTATATTATTCGATT-TTTg
gi|12 : ttgATAACTTGAAG------C------------ACATTCAACTTTGCTTTGATATTATTAGATT-TTTTCT---AAGGGGTACAT----------AT-A--TGTTGAAAACAATTCAATATTTCTGTAAC-----------GTT--------GT---Ataag
gi|13 : acctttcttatagttgttttacttataacttgattccacattacttatagttgtttttacttataatttgaactacattccacctttcttacagttattttactt--GCCATGAAGCATGATAAGT--CAA-TT--ACAGTCCATA--CAGTCATAAAACAGATGCAA-ACAAGTGTCTTTC-GAGTTGTTGCAAAAATT--GCATAATTCGG-TTCTGACA-T-T--------------GTTTTGGAGTGATGAAAATAACTCTATATACAAGTT-TGAAATGC-AAGGACTGGAGATGTGTATCATATATTAATAa
gi|14 : TTTA-ATGT-TG-----T-AT--TTTAATTCT-TTTG-TGCGTACATAT--------------ACCGT-A---CAGAA-CATAGCATAATTATA-CATT-GTAA--CA-G---T-TAATGTAT-T--TTT-CT-CTT------AAGAAAAATAAG--A-----------------T----TT---AC--------ATAGCAGGA-----AT------GT--T-------------TT--A----TAC-T-GTAACTATT--ATC------GT--A-TAT--TA---AT---------aaga
gi|15 : tgtgTTATATTGTTAGATTATTTAC----AAAGGGTATAT----------TT-AATTATT---AACAATTCAATATTTCTATAAC-----------TTT--------TA---ACTTGTTCAATAAAAACTGAATAAATTGAGAAACA-TTTT---TTCAATTTGCAAGAATAAATGTACTTTTTTT-----ATAAATAAACAATAAAA---GTCAAATAATAGTCAATACtgttttcttttagttatgt
gi|16 : TTAA-ATAT-TT-----T-GTAGTC-AATTAT-TT-TCTATGTGCATAT--T-----------AAACTGA-A-CAGAG-CATAACATAATTATA-CATT-GTTA--CATA---TGTA--ATATAT--AGT-CTGCTC------ATAAGAAATACATGA-----------------T----TT---AC--------ATAGCAGGA-----AT------G
gi|17 : cAAGAATACGTTGATC------A------------TCATTCCGATTTGCTTTTGTAGTATTATATT-TTTCC----AAGGGGTAGAT----------AT-G--TGTTGAAAACAATTCAATATTTTCATAAC-----------TTTGTATAAAATTTTAACTTGTTCGATAAAACCTGAATaattaagttgtaacttttatcatgcgt
gi|18 : TAGTATTATATT-TTTCC----AAGGGGTACAT----------AT-A--TGTTGAAAATAATTCAATATTTC-ATAACTTTGTAAAACATTT--------TT---ACTTGTTCGATAAAACCTGAAT
gi|19 : tTTTTTA-ACAT-TT-----C-GT--TC-AATAAT-TT-G-TGTGTACACAT-CT-----------AAATA-A-A-CCCAA-TAAAGGATAATTGTT-CATT-GTTA--CATA---TATA
gi|2 : ttgTTTTTTG--TAT-TT-------AT--TC-AATTAT-TTTG-TGTGTACATGT--T-----------AAGAT-ATA-CAGAT-TATAATATATTTATA-CATT-GTTAAATATA---TGTAATATATAT--CCT--TGTTC------G-------------A-----------------TCAT-TTGAAAT--------ATAT---GATTTACAT------AT--T-------------TT--AGGT-T-G-T-A-----ACT--ATC------AT--CATATAATA---ATTGCTTTCTTA----TAC-----TAGTA---GTT-AT--TTT-A--CTA-----AT---AACT----------T---TC-----------AGAG--TACCTTGA------------------------TTCCATCTTGCTTTTATATTTTTAGACT-TTTCC----AAGTGGTACAT----------AT-A--TGTTGACAACGATTCAATATTTCTATAA------------ATT--------TT---ACTTGTTCAATAAAAATTGAATAAATTG------------------------CAAGAGTAAATGTAC--TTTTTTTTTTATAAACAAACAATAAAATATCAAGAAT-GCAGTCAATTCATGAAGAGCATTTTGTGCTCAAAAATAATGTTCTCTAGTTTGA-TATCTTCTGAAATATTACATTTGTCCTTTAATTG--GCTATAA-GCGTGGTAAGT--ATA-TT--------------CAGTCATAAAACGGATGCGAAAT-AGTTTCTTTTCGATGTATTACAAAAAGT--ACACAATTTGGATTCTGACA-T-T-CAAATTGTATATAGTTTTGTATTGGTGAAAATAATTCTATAAACAAATT--GAATTGCAAA-GATTGGACGTGTGTATCTCTTTCGGAAAT-AATGGTTGTTTAT-ACGAAATATTCCAATCTGTAATGTCCAATACACTACCCA--CGTCCCTTTCCTACTTTTGTGATGAGGTACTTGGGCATTCAACAAAACATTTCAATAAATGAAGATAGAAAGATTGATTTA--CTTGTTTGACCATTGTTAG-TTTAGAAATATTTCGATT-TTTTGGGATACTC-----TTTTA--------TATACATTTTTTCCAATTAACTGAAATTGAAGAATGTCAGAGGCAAACAATTATTTTCAACA-ATAGGGTCTATAA-TATATAATCTCTTATg
gi|20 : TGGGAGACA-TTTTATTTTAAATTTGCAAGAATAAATGTACTTTTTTT-----ATTAATAATCAACACAATATAGAAAAT-ACAAT
gi|3 : TTTTTA-ACAT-TT-----T-AT--GC-AATAAG-TT-G-CGTGTACACAT-CT-----------AAATA-A-A-CTGAA-CATAACATAATT-TGTCAGT-GTTA--CATA---TGTAAAATATAT--AAT-CTGCTC------G-------------AATATAATATATAATATCT----TT---AT--------ATAGTAGGA-----AT------GT--T-------------TC--A----T-C-T-A-----ATT--ATC------AT--T-TTT--AA---AT---------A----A-C-----TT--T---ATT-TT--GTC-A--TTAAAATCAT---AACT----------TG--TT-----------ACAGAATACATTTAAC------T------------ACATTGCATCTTGCTTTTACATTGTTAGATT-TGTTC----AAGGGGTACAT----------AT-A--TGTTGAAAACAATTCTATATTTCTATAAC-----------TTT--------TT---ACTTGTTCGATAAAAACTGAATAAATTGGGAGACATTTTT---TTCAATTTGCAAGAATAAATACAC--TTTTT-----ATAAATGAGCAATAAAACATATAAAAT-ACAATCAATACATGACGAGCACTTAATGCCCAACA-TAATGTTCTCTCGCTTTA-TTTCTTCTGAAATATTACATTTGTCCTTTAA-TG--GCTATAAAGCATAATAAGT--ATATTTTTAGAGTGCAAA--CAGTCATAGAACAAATACAATAT-AGTCTCTTTT-GAGTTGTTACAAAAGGT--ACACAATTCGATTTCTGACA-TGC-CACAC-GTATACAATTTTGCATTAGTAAAAATAATTCTATGAAGATTTT-TGAATTGCAAA-GACTGGATGTGTGTATCATTTATGAAAATAAATGGGTGTTTAT-ACAAAATTTTCCAGTCTGTAATGTCCAATACCTTACCAA--CGGCCCTTTCCCACTTTTGTTGTGAGGTACTGGGGCATTCAACAAAATATTTCAAAAATTGAGGGTAGAAGCATTGATTTACTTTTTTTTG-CAAATTTTAG-TTT-GAAATATTTTCATT-TCTT-GGATACTTTATTTTTTTA-TATTTTCTATACATTTTTTCCAA
gi|4 : gTCTTTTTG-AT-T-TTATCAGT-AT--TT-AGTTGC-AT-G-TGTTTACATA--CTCATAGCAAAAAAAAAT-A-AATTGAA-TGCAACATCATACTA-CACT-GTTA--CATA---TGTAATATATAT--AAT-CTGTTC------A------------------------------------------T--------ATAGT----------T------AT--T-------------GT--A----T-T-TTA-----ATT--ATT------TTCAT-TAT--TT---AT---------T----G-C-----TA--A---ATTGTTA-GTC-G--TTATA---ATTAAAACA----------GG--TG-----------GAAGAATAGCTTAAGC------TTAAATAATTATTATATTTCACATTGTTTTTATATTTTCATATT-TTACT----AAGGGGTGTATCGAGTATAATATTA--TGTTGAAAGTAAATCAATATTTCTATTAT-----------AGT--------TC---A-TTGGTCTATGAAA-CTGAATAAATTTAGAGACA-TTTTA--TTCAATTTGCAAG--TAATTATAC--GTTTT-----ATATATAAGCAATA-------------------CAAT---------GTATCTAATGG--AAAA-AAAT--CCTCT-GTTTAAATGTCTTCTAAAATATTACATGTATCCCTTTACTGTGGCTATTAAGCATGATAAAT--ATA-TTTTAGAGTACGTA--CAAACATATAACAAATGTAGTAC-AGTTTCTTTT-GAGATGTTACCAAAATT--GCACAATTCCATTTCTTACATT-T-TACAC-GTACATAG--TTG-ATTATTGAATATTTCTCTATAAAGAATTT-TGAATTAC-TA-TAGTGGAGGTGCGAAT
gi|5 : cttA-ATAG-TT-----T-AT--TC-AAATATCTT-A-TGGCTACATAT--T-----------AAAATAA-A-CTGAA-CAT
gi|5 : taaATG-GCTA--CATA---T-TAAAATAAACTGAAC-ATGT--------A-------------A-----------------T----AT---AT--------ATAATAGGA-----AT------GT--T-------------CA--A----A-T-T-A------TT--ATA------AT--T-AAT--TA---ATT--------G----T-C-----T--------TT-TCTAGTC-ACTTTACTT--GT---AGCT----------TG--TT-----------AAA---TACCTTGAAC------T------------ACATTCAACTTTGCTTTTATAT-----GATT-----------AG---------------------A--TATT--------TCCACTATTTCTATAAC-----------ATT--------TT---AGTTGTTCGACAAAAACTGAATACGTTAGGAGGTA-T---------AATTTGCAAGAATAAATGTAC--GTTTT-----ATAAATAAGCAATAAAACATATATAAT-ACAGTCAATACCTGATGG-------ATGTC---------TGTTCCCTCATTCCA-GTTCTTCTGAAATATTACATTT-----TTGACTA--GCCATA-----TTACA--T--ATA-TTTTAGAATACATAAACAGTCATAGAACAGATGCACTAT-AGTTTATTTT-GATTTGTTACAAAAAGT--GCACAGTTCGGTTT--AACA-T-T-------G-ATATAATTTTGCACTAGTGAAAATAATTCTGTGAAAAATTT-TGAATTGC-AA-GGAT-GAGGTGTGTATCATTTATAAATAAAAATGGTTCTTTATAAAAAAATATTCAAGTCTGTAATATCCAATACACTACCCAATCGT--CTTTCCCACGTTTGCTGTTGATTGCTGGGGCATTCAACAgtaatatatataataggaatgttcaaattattataattaattaattgtcttttctagtcactttacttgtagcttgttaaataccttgaactacattcaactttgcttttatatgattagatatttccactatttctataacattttagttgttcgacaaaaactgaatacgttaggaggtataatttgcaagaataaatgtacgttttataaataagcaataaaacatatataatacagtcaatacctgatggatgtctgttccctcattccagttcttctgaaatattacatttttgactagccatattacatatattttagaatacataaacagtcatagaacagatgcactatagtttattttgatttgttacaaaaagtgcacagttcggtttaacattgatataattttgcactagtgaaaataattctgtgaaaaattttgaattgcaaggatgaggtgtgtatcatttataaataaaaatggttctttataaaaaaatattcaagtctgtaatatccaatacactacccaatcgtctttcccacgtttgctgttgattgctggggcattcaaca
gi|6 : taaaatagtttattcaaatatcttTTTTTTTAGATAT-TT-----TTAT--TC-AATCAT-TTTG-TGTGTACATAT--T-----------AAGAT-ATA-CAGAA-CATAACAAAAGTATA-CACG-GTTA--AATA---TGTA--ATATAT--AGG-CTGTTCATAAGAA-------------A-----------------TAAGATT---ATC-------ATAGAAGGA-----ATTTTTAGGT--TTAACTACATTGTATT--A----T-CAT-A-----CGT--ATC------GT--A-TAT--TA---TT---------A----T-CTTTTTTAT-A---GTT-AT--GTTGA--TT------AT---AAC---------------TT-----------AAATAATACCTTGAAC------T------------ACATTCCACCTTTCTTTTATATTATTAGATT-TTTCC----AAGGGGTACAC----------GT-T--TGTTGAAAATAATTCAATATTTCTATAAC-----------CTT--------TT---ACTTTTTC-----------AATAAACTGGGAGCCATTTTT---TTCAATTTTCAAGAATGAA-ATAA--TTTTG-----ATA
gi|7 : gTTTA-ATATGTT-----T-AT--TA-AATCAT-TTTG-TGTGTATATAT--T-----------AAAAT-ATA-CATAA-CATAACATAATCATG-CATT-GTAA--CATA---TTTAATATATA---AAT-AAGA--------A-------------A-----------------TA---TG---AT--------ATA-CAGGA-----AT------GT--T-------------TT--AAGT-T-T-T-A-----ACT--A-C------AT--TGTAT--TACC-AT---------A----T-G-----TT--ATCCATT-AT--CTT-A--CTT-----AT---AGTTATGTTGCTTATGACTT-----------AAAGAATACATTGAAC------T------------ATATTCAACCTTGCTTTTATATTATTAGATT-TTTCC----AGGGAGCA-AT----------AT-A--TGTAGAAAATAATTCAATGGTTCTAAAAC-----------CTT--------TT---ACTTGTTCAATAAACAATGAATAAATTAGAAG
gi|8 : TTAATTG--GCCACACAGCATGTTAAGA--CTA-TTTTAG--TACATA--CAGTCACAGAACAAATGTGATC---GTTTCTTTT-GAGTTGTTAC--AAAGTAAACATAATTCGAACCCTAATA-T-TCCAAAA-GGATATAGTTTTTTATGTGTGAAAATATTTATATGTAAAATTTAAAAATTGC-AATGATAAGATGTGTGCATCATTTATG-ATAT------------------AAATATTCCAATTTGTATTGTCAAATACACTACCCA--CGTCCCTTTCCCAATTTTATTGTGA
gi|9 : TTTTTA-ACAT-TG-----T-AT--TC-ACTTAT-TT-G-TG--TACATAT--T-----------AAAATAA-A-CAGAA-CATAATATGATTGTA-CATT-GTTA--TACC---TGTGATATATA---AATGCTGCTC------ATAAATGC------A-----------------T----AT---ATACATACAAATAGAAAGA-----AT------GT--T-------------TCGAA----T-CTT-A-----ATT--ATTATTAGGAT--T-CAT--TG---AT---------ACATTT-CAGCT-TA--A---ATT-TA--AT--A--TCT-----AT---AACT----------TG--TT-----------AAATAACATTTTGAACTAATCAT------------ACATTCAAACTTGCATTTATATTATTAGATC-TTTACACTTAATGTGTATAT----------AC-A--Tacaaactaccggtttttttcaaatatttcaccaacaattagt
blockSeqs : G G ATCAG T AG T C C TG CTCATAGCAAAAA GAA T G A T T AA GAG C GGA GC TCATAAGAAATAAGATTATCATAGAAGGAATTTTTAGGTTTAACTACATTGTATTATCATACGTATCGTATATTATTATCTTTTTTATAGTTATGTTGATTATAACTT TTAAATAATTATT A ACTT C CGAGTATAAT T AT TTTGTAAAACAT GTATAAAA TTA A A T ATTTT TT TTTTTT A T T A A A T T CTCAAAAAT A G A A G T TG AA . T T A A C AA A A CA C A AA A T TCAAATT T G C AA A G ACTG A A A AT A ACT A C G G TT C T T CCAA TT C AA G CAAT CA . G GGTCTAT G A G A A . C A A . T . . . C T .
blockSeqs : . . A . . . T . TC ACT ATA A . A . . . . G CTG A TCATAAATGCATATATACATACAAATAGAAAGAATGTTTCGAATCTTAATTATTATTAGGATTCATTGATACATTTCAGCTTAAATTTAATATCTATAACTTGTT TAATCAT . T T . . . G . . G C T ATT TT T A T A . T C C A CCCAACAT C T . T G C . AA . . T A A G . G T T . A . T . GCCACAC T T C T A T ATTG G A . . A AG . A . A GA . G T TAT TT . A . . . . T . . .
blockSeqs : . . . . . . T . TG CT AAA A . A . . . . A T C TCGATCATTTGAAATATATGATTTACATATTTTAGGTTGTAACTATCATCATATAATAATTGCTTTCTTATACTAGTAGTTATTTTACTAATAACTTTC T . . G . . . T . . G C . TT . T C C G . A T T A GAAAAA C A . G A C . AA . . T A A A . A T T . A . T . TCCAAAA T C G T . . ACTG A . . . T A . . . . CA . . . . .
blockSeqs : . . . . . . A . TG CT AAA C . G . . . . G T C TCGAATATAATATATAATATCTTTATATAGTAGGAATGTTTCATCTAATTATCATTTTTAAATAACTTTATTTTGTCATTAAAATCATAACTTGTT C . . C . . . T . . A A . TT . T A C T . A . . . TC . C . T . T . CA . . T A A A . A T C . C . T . TTACAC G C G T . . AGTG A . . .
blockSeqs : . . . . . . T . TG T ATA A . A . . . . G T C GATTTACATAGCAGGAATGCTGTTTACAGTTGTAACTACATCGTAGTATCATACACATATAAATTGCTTTCGTATAGTTGTGTTACTTACAACTA A . . C . . . A . . G A . TT . T A . T . . . . A . . . A . A . A T T . A . A . T . T A T . . ATAA .
blockSeqs : . . . . . . A . G T ATA T . C . . . . G T C AATATGATATACAGGAATGTTTTAAGTTTTAACTACATTGTATTACCATATGTTATCCATTATCTTACTTATAGTTATGTTGCTTATGACTT T . . C . . . T . . T A . . . T . . . . . . . . . . . . . G . . . . . . . T . . A . . . GAT
blockSeqs : . . . . . . T . G T AAA T . A . . . . G T A AATATATATAATAGGAATGTTCAAATTATTATAATTAATTAATTGTCTTTTCTAGTCACTTTACTTGTAGCTTGTT T . . T . . . A . . G A . . . G
blockSeqs : . . . . . . T . G T AT T . A . . . . T T C TCATATAGTTATTGTATTTTAATTATTTTCATTATTTATTGCTAAATTGTTAGTCGTTATAATTAAAACAGGTG T . . C . . . A . . A .
blockSeqs : . . . . . . C . A T AA A . G . . . . G . A T . . T . . . C . . . .
blockSeqs : . . . . . . C . G T AA A . . . . . . . . . . . . . . . . C . .
blockSeqs : . . . . . . T . . . A A . . . . . . . . . . .
blockSeqs : .
blockSeqCons : T************* ANA** TT*** T***** CCGAA**** ** ACTG
originalCons : TTTTTTTA-ATAT-TT-----T-AT--TC-AATTAT-TT-G-TGTGTACATAT-CT-----------AAAAT-A-A-CNGAA-CATAACATAATTATA-CATT-GTTA--CATA---TGTAATATATAT--AAT-CTGCTC------A-------------A-----------------T----TT---AT--------ATAGCAGGA-----AT------GT--T-------------TT--A----T-C-T-A-----ATT--ATC------GT--T-TAT--TA---AT---------A----T-C-----TA--A---ATT-TT--GTC-A--TTA-----AT---AACT----------TG--TT-----------AAAGAATACCTTGAAC------T------------ACATTCCACCTTGCTTTTATATTATTAGATT-TTTCC----AAGGGGTACAT----------AT-A--TGTTGAAAACAATTCAATATTTCTATAAC-----------NTT--------TT---ACTTGTTCGATAAAAACTGAATAAATTGGGAGACA-TTTT---TTCAATTTGCAAGAATAAATGTAC--TTTTT-----ATAAATAAGCAATAAAACATATAAAAT-ACAGTCAATACATGACGAGCACTTAATGCCCAANA-TAATGTTCTCTCGTTTNA-TTTCTTCTGAAATATTACATTTGTCCTTTAACTG--GCCATAAAGCATGATAAGT--ATA-TTTTAGAGTACATA--CAGTCATAGAACAGATGCGATAT-AGTTTCTTTT-GAGTTGTTACAAAAAGT--GCACAATTCGGTTTCTGACA-T-T-CACAC-GTATATAGTTTTGCATTAGTGAAAATAATTCTATGAAGAATTT-TGAATTGC-AA-GANTGGAGGTGTGTATCATTTATGAATATAAATGGTTGTTTAT-ACAAAATATTCCAGTCTGTAATGTCCAATACACTACCCA--CGTCCCTTTCCCACTTTTGTTGTGAGGTACTGGGGCATTCAACAAAATATTTCAAAAANTGAGGGTAGAAAGATTGATTTA--TTTTTTTG-CAATTTTTAG-TTTGGAAATATTTTTNTT-TTTTNGGATACTCTATTTTTTTACTATTTTTTATACATTTTTTCCAATTAACTGGAATTGCAGAATATCAGACCCAAA----TACTTT--ACA-ANAG-------AA-TACAT-ATCTCATATTTTNCGCATNAACTTTCAGAATGCCAGAAGCGGACANTTATCANCCGCTATATCGTTTNCGAAGTATATTCCCTTGTTACACATGGCCTTATAAAANACANTATCATAATTATCTTTAT
finalCons : TTTTTTTA-ATAT-TT-----T-AT--TC-AATTAT-TT-G-TGTGTACATATT-------------AAAATANA--CNGAA-CATAACATAATTATA-CATT-GTTA--CATA---TGTAATATATAT--AAT-CTGCTC------A-------------A-----------------T----TT---AT--------ATAGCAGGA-----AT------GT--T-------------TT--A----T-C-T-A-----ATT--ATC------GT--T-TAT--TA---AT---------A----T-C-----TA--A---ATT-TT--GTC-A--TTA-----AT---AACT----------TG--TT-----------AAAGAATACCTTGAAC------T------------ACATTCCACCTTGCTTTTATATTATTAGATT-TTTCC----AAGGGGTACAT----------AT-A--TGTTGAAAACAATTCAATATTTCTATAAC-----------NTT--------TT---ACTTGTTCGATAAAAACTGAATAAATTGGGAGACA-TTTTTT---CAATTTGCAAGAATAAATGTAC--TTTTT-----ATAAATAAGCAATAAAACATATAAAAT-ACAGTCAATACATGACGAGCACTTAATGCCGAA----AATGTTCTCTCGTTTNA-TTTCTTCTGAAATATTACATTTGTCCTTTAACTG--GCCATAAAGCATGATAAGT--ATA-TTTTAGAGTACATA--CAGTCATAGAACAGATGCGATAT-AGTTTCTTTT-GAGTTGTTACAAAAAGT--GCACAATTCGGTTTCTGACA-T-T-CACAC-GTATATAGTTTTGCATTAGTGAAAATAATTCTATGAAGAATTT-TGAATTGC-AA-GACTGGAGGTGTGTATCATTTATGAATATAAATGGTTGTTTAT-ACAAAATATTCCAGTCTGTAATGTCCAATACACTACCCA--CGTCCCTTTCCCACTTTTGTTGTGAGGTACTGGGGCATTCAACAAAATATTTCAAAAANTGAGGGTAGAAAGATTGATTTA--TTTTTTTG-CAATTTTTAG-TTTGGAAATATTTTTNTT-TTTTNGGATACTCTATTTTTTTACTATTTTTTATACATTTTTTCCAATTAACTGGAATTGCAGAATATCAGACCCAAA----TACTTT--ACA-ANAG-------AA-TACAT-ATCTCATATTTTNCGCATNAACTTTCAGAATGCCAGAAGCGGACANTTATCANCCGCTATATCGTTTNCGAAGTATATTCCCTTGTTACACATGGCCTTATAAAANACANTATCATAATTATCTTTAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 1 1111111111111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2222222222222222222 1111 1111111111 111111111111 11111111 1 11111 11 111111 444444444444444 222222222 1 111111 1 11 222 1 1 1 1 1111 11 1 2222 11 1 4444444 1 1 33 2222 222 1 11 1 22222
lowQualScore : 3 3 11111 3 44 3 1 3 6 3 6666666666666 4 1 2 3 3 44 555 777 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 6666666666666666666 3 0000 0 4444444444 6666 888888888888 33333333 666 2 3 0 0 0 33333 33 222222 1 5 1 0 5 0 3 0 3 5 1 666666666666666 5 1 8 1 0 3 77 3 1 22 77 5 5 1 1 2 77 1 1 88 5 1 77 5 0 5 777777777 4 5 1 77 1 111111 0 1 0 0 8 11 1 777 0 9 0 6 11 0 0 3 6666 0 44 6 44 2 8888 88 3 1 3333333 3 3 1 1 00 3333 1 1 2 111 1 5 77 5 1 1 77777
lowQualScore : . . ..... . .. . . . . . ............. . . . . . .. ... ... ........................................................................................................................................................................................................................................................ . ................... . .... . .......... .... ............ ........ ... . . . . . ..... .. ...... . . . . . . . . . . . ............... . . . . . . .. . . .. .. . . . . . .. . . .. . . .. . . . ......... . . . .. . ...... . . . . . .. . ... . . . . .. . . . .... . .. . .. . .... .. . . ....... . . . . .. .... . . . ... . . .. . . . .....
lowQualScore : 3 3 77777 3 66 3 2 3 7 3 8888888888888 2 0 8 3 3 66 888 111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0000000000000000000 1 4444 2 6666666666 4444 333333333333 22222222 444 3 1 9 0 1 99999 88 666666 4 3 6 3 7 4 5 6 2 6 4 888888888888888 0 0 0 0 8 7 99 9 4 00 99 7 0 4 4 1 99 4 7 00 7 4 99 4 1 7 777777777 9 3 7 44 4 666666 7 7 6 6 0 00 0 000 0 2 0 5 88 0 8 2 2222 8 00 7 77 0 3333 33 3 0 3333333 3 3 0 0 55 5555 0 0 5 555 0 5 55 5 0 0 55555
consensus : TTTTTTTA-ATAT-TT-----T-AT--TC-AATTAT-TTTG-TGTGTACATAT-T-----------AAAATANACNGAACATAACATAATTATA-CA-TTGTTA--CATA---TGTAATATATAT--AAT-CTGCTC------G-------------A-----------------T----TT---AT--------ATAGCAGGA-----AT------GT--T-------------TT--A----T-C-T-A-----ATT--ATC------GT--T-TAT--TA---A-T---------A----T-C-----TA--A---ATT-TT--GTC-A--TTA-----AT---AACT----------TG--TT-----------AAAGAATACCTTGAAC------T------------ACATTCCACCTTGCTTTTATATTATTAGATT-TTTCC----AAGGGGTACAT----------AT-A--TGTTGAAAACAATTCAATATTTCTATAAC-----------NTT--------TT---ACTTGTTCGATAAAAACTGAATAAATTGGGAGACA-TTTT---TTCAATTTGCAAGAATAAATGTAC--TTTTT-----ATAAATAAGCAATAAAACATATAAAAT-ACAGTCAATACATGACGAGCACTTAATGC-CNAACA-AAT---GTTCTCTCGTTTNA-TTTCTTCTGAAATATTACATTTGTCCTTTAACTG--GCCATAAAGCATGATAAGT--ATA-TTTTAGAGTACAT--ACAGTCATAGAACAGATGCGATAT-AGTTTCTTTT-GAGTTGTTACAAAAAGT--GCACAATTCGGTTTCTGACA-T-T-CACAC-GTATATAGTTTTGCATTAGTGAAAATAATTCTATGAAGAATTT-TGAATTGC-AA-GANTGGAGGTGTGTATCATTTATGAATATAAATGGTTGTTTAT-ACAAAATATTCCAGTCTGTAATGTCCAATACACTACCCA--CGTCCCTTTCCCACTTTTGTTGTGAGGTACTGGGGCATTCAACAAAATATTTCAAAAANTGAGGGTAGAAAGATTGATTTA--TTTTTTTG-CAATTTTTAG-TTTGGAAATATTTTTNTT-TTTTNGGATACTCTATTTTTTTACTATTTTTTATACATTTTTTCCAATTAACTGGAATTGCAGAATATCAGACCCAAA----TACTTT--ACA-ANAG-------AA-TACAT-ATCTCATATTTTNCGCATNAACTTTCAGAATGCCAGAAGCGGACANTTATCANCCGCTATATCGTTTNCGAAGTATATTCCCTTGTTACACATGGCCTTATAAAANACANTATCATAATTATCTTTAT
Reference ( family-65 ) : TTTTTTTA-ATAT-TT-----T-AT--TC-AATTAT-TT-G-TGTGTACATAT-T-----------AAAATANACNGAACATAACATAATTATA-CA-TTGTTA--CATA---TGTAATATATAT--AAT-CTGCTC------A-------------A-----------------T----TT---AT--------ATAGCAGGA-----AT------GT--T-------------TT--A----T-C-T-A-----ATT--ATC------GT--T-TAT--TA---A-T---------A----T-C-----TA--A---ATT-TT--GTC-A--TTA-----AT---AACT----------TG--TT-----------AAAGAATACCTTGAAC------T------------ACATTCCACCTTGCTTTTATATTATTAGATT-TTTCC----AAGGGGTACAT----------AT-A--TGTTGAAAACAATTCAATATTTCTATAAC-----------NTT--------TT---ACTTGTTCGATAAAAACTGAATAAATTGGGAGACA-TTTT---TTCAATTTGCAAGAATAAATGTAC--TTTTT-----ATAAATAAGCAATAAAACATATAAAAT-ACAGTCAATACATGACGAGCACTTAATGC-CGAA---AAT---GTTCTCTCGTTTNA-TTTCTTCTGAAATATTACATTTGTCCTTTAACTG--GCCATAAAGCATGATAAGT--ATA-TTTTAGAGTACAT--ACAGTCATAGAACAGATGCGATAT-AGTTTCTTTT-GAGTTGTTACAAAAAGT--GCACAATTCGGTTTCTGACA-T-T-CACAC-GTATATAGTTTTGCATTAGTGAAAATAATTCTATGAAGAATTT-TGAATTGC-AA-GACTGGAGGTGTGTATCATTTATGAATATAAATGGTTGTTTAT-ACAAAATATTCCAGTCTGTAATGTCCAATACACTACCCA--CGTCCCTTTCCCACTTTTGTTGTGAGGTACTGGGGCATTCAACAAAATATTTCAAAAANTGAGGGTAGAAAGATTGATTTA--TTTTTTTG-CAATTTTTAG-TTTGGAAATATTTTTNTT-TTTTNGGATACTCTATTTTTTTACTATTTTTTATACATTTTTTCCAATTAACTGGAATTGCAGAATATCAGACCCAAA----TACTTT--ACA-ANAG-------AA-TACAT-ATCTCATATTTTNCGCATNAACTTTCAGAATGCCAGAAGCGGACANTTATCANCCGCTATATCGTTTNCGAAGTATATTCCCTTGTTACACATGGCCTTATAAAANACANTATCATAATTATCTTTAT
gi|1 : TTTTTTTA-ACAT-TT-----T-AT--TC-AATAAT-TT-G-TGTGTACACATCT-----------AAAACA-ACTGAACGTAACATAATTGTA-CA-TTGTTA--CATA---TGTAATATATAT--AAT-CTGCT---------------------A-----------------T----TT---AT--------ATAATATGA-----AT------GT--T-------------TT--A----T-C-T-G-----ATT--ATC------GT--T-TAT--AA---A-T---------A----T-C-----TA--A---ATT-TT--GTC-A--TTA-----AA---AACT----------TG--TT-----------AAAGAATACATTTAAC------T------------AGATTCCACCTTGCTTTTATATTGTTAGATT-TTTTC----AAGAGGTACTT----------AT-A--TGTTGAAAACAATTCTATATT-CTATAAC-----------ATT--------TT---ACTTGTTCGATACAAACTGAATAAATTGAGAGACA-TTTT---T-CAATTTGCAAGAATAAATATAC--TTTT------ATAAATGAGCAATAAAACATATAAAAT-ACAATCAATACATGGCGAGCACTTAATGT-CCAACACAAT---GTTCTCTCGCTTTA-TTTCTTCTGAAATATTACATTTGTCCTTTAACTG--GCTATAAAGCATAATAAGTTCATT-TTTT-GAGTGCAT--ACAGTCATAGAACAAATGCAATAT-AGTTTCTTTT-GAGTTGTTACAAAAGGT--ACACAATTTGGTTTCTGACA-TAC-CACAC-GTATACAATTTTGCATTAGTAAAAATAATTATCTGAAGAATTT-TGAATTGC-AA-G----GAGGTGTGTATCATTTATGAATATAAATGGTTGTTTAT-ACAAAATAATCCAGTCTGTAATGTCCAATACATTACCAA--CGTCCCTTTCCCACTTTTGTTGTGAAGTACTGGGGCATTCAACAAAATATTTCAAAAATTGAGTGTAGAAAGATTGATTT---TTTTTTTG-CAATTTTTAG-TTCGGAAATATTTTTCAT-TTTTAGGATACTCTATTTTTTTACTATTTTTTATACATCTTTTCCAATTAGCTGGAATTGCCG-ATATCAACCCCAAA----TACTTT--ACACAAAG-------AA-TACAT-ATCTCATATTTTTCGCATCAACTTTC-GAATGTCAGAAGCAAACAGTTATCATCCGCTATATCGTTTACGAAGTATATTCCCTTGTTACACATAGCCTTATAAAAGACAGTATCATAATTATTTTTAT
gi|10 : AATAAAGATAGAAAGATTGATTTAG-TTTTTTTT-C--TTTTTAGGTTTGAAAATATTTTTTTTCTTTTTGGATATTCTATTTATTTGCCAATTTTTATACA-------------A-TGGAATTGCAGA-TATTA-ACCCAAA----TACTTT--ACA-AGAG-------AAGTGCAT-ATCTCACATTTTGCACATAAACTTTCA-AATACCAG----GGACACTTATTAACAACT---TCGTTTTTAAAATATATTCCC-TATTACACATG--TTTAT-AAACACATTATTA-----ATCTTTATa
gi|11 : attTTTTTA-ATAT-GTA----T-AT--TC-AATCAT-TTTG-TGTGCATATAC-T-----------ATTATATTTGGAGCATTACATAATTATA-CATTTGTAA--TATAGAGTCTAAT-TATAGGAAAT-ATA--T------G-------------A-----------------T----TT---AC--------ATAGCAGGA-----AT------GCTGT-------------TT--ACAGTT-G-T-A-----ACTACATC------GTA-G-TAT--CATACA-C---------A----T-A-----TA--A---ATTGCT--TTC-G--T-------AT---AGTTG---------TG--TTACTTACAACTAAAAGAATACCTGAAAC------T------------ACAATCCACCTTGCATTTATATTATTCGATT-TTTg
gi|12 : ttgATAACTTGAAG------C------------ACATTCAACTTTGCTTTGATATTATTAGATT-TTTTCT---AAGGGGTACAT----------AT-A--TGTTGAAAACAATTCAATATTTCTGTAAC-----------GTT--------GT---Ataag
gi|13 : acctttcttatagttgttttacttataacttgattccacattacttatagttgtttttacttataatttgaactacattccacctttcttacagttattttactt--GCCATGAAGCATGATAAGT--CAA-TT--ACAGTCCAT--ACAGTCATAAAACAGATGCAA-ACAAGTGTCTTTC-GAGTTGTTGCAAAAATT--GCATAATTCGG-TTCTGACA-T-T--------------GTTTTGGAGTGATGAAAATAACTCTATATACAAGTT-TGAAATGC-AAGGACTGGAGATGTGTATCATATATTAATAa
gi|14 : TTTA-ATGT-TG-----T-AT--TTTAATTCT-TTTG-TGCGTACATAT---------------ACCGTACAGAACATAGCATAATTATA-CA-TTGTAA--CA-G---T-TAATGTAT-T--TTT-CT-CTT------AAGAAAAATAAG--A-----------------T----TT---AC--------ATAGCAGGA-----AT------GT--T-------------TT--A----TAC-T-GTAACTATT--ATC------GT--A-TAT--TA---A-T---------aaga
gi|15 : tgtgTTATATTGTTAGATTATTTAC----AAAGGGTATAT----------TT-AATTATT---AACAATTCAATATTTCTATAAC-----------TTT--------TA---ACTTGTTCAATAAAAACTGAATAAATTGAGAAACA-TTTT---TTCAATTTGCAAGAATAAATGTACTTTTTTT-----ATAAATAAACAATAAAA---GTCAAATAATAGTCAATACtgttttcttttagttatgt
gi|16 : TTAA-ATAT-TT-----T-GTAGTC-AATTAT-TT-TCTATGTGCATAT-T-----------AAACTGAACAGAGCATAACATAATTATA-CA-TTGTTA--CATA---TGTA--ATATAT--AGT-CTGCTC------ATAAGAAATACATGA-----------------T----TT---AC--------ATAGCAGGA-----AT------G
gi|17 : cAAGAATACGTTGATC------A------------TCATTCCGATTTGCTTTTGTAGTATTATATT-TTTCC----AAGGGGTAGAT----------AT-G--TGTTGAAAACAATTCAATATTTTCATAAC-----------TTTGTATAAAATTTTAACTTGTTCGATAAAACCTGAATaattaagttgtaacttttatcatgcgt
gi|18 : TAGTATTATATT-TTTCC----AAGGGGTACAT----------AT-A--TGTTGAAAATAATTCAATATTTC-ATAACTTTGTAAAACATTT--------TT---ACTTGTTCGATAAAACCTGAAT
gi|19 : tTTTTTA-ACAT-TT-----C-GT--TC-AATAAT-TT-G-TGTGTACACAT-C-----------TAAATAAACCCAATAAAGGATAATTGTT-CA-TTGTTA--CATA---TATA
gi|2 : ttgTTTTTTG--TAT-TT-------AT--TC-AATTAT-TTTG-TGTGTACATGT-T-----------AAGATATACAGATTATAATATATTTATA-CA-TTGTTAAATATA---TGTAATATATAT--CCT--TGTTC------G-------------A-----------------TCAT-TTGAAAT--------ATAT---GATTTACAT------AT--T-------------TT--AGGT-T-G-T-A-----ACT--ATC------AT--CATATAATA---A-TTGCTTTCTTA----TAC-----TAGTA---GTT-AT--TTT-A--CTA-----AT---AACT----------T---TC-----------AGAG--TACCTTGA------------------------TTCCATCTTGCTTTTATATTTTTAGACT-TTTCC----AAGTGGTACAT----------AT-A--TGTTGACAACGATTCAATATTTCTATAA------------ATT--------TT---ACTTGTTCAATAAAAATTGAATAAATTG------------------------CAAGAGTAAATGTAC--TTTTTTTTTTATAAACAAACAATAAAATATCAAGAAT-GCAGTCAATTCATGAAGAGCATTTTGTGCTCAAA---AATAATGTTCTCTAGTTTGA-TATCTTCTGAAATATTACATTTGTCCTTTAATTG--GCTATAA-GCGTGGTAAGT--ATA-TT--------------CAGTCATAAAACGGATGCGAAAT-AGTTTCTTTTCGATGTATTACAAAAAGT--ACACAATTTGGATTCTGACA-T-T-CAAATTGTATATAGTTTTGTATTGGTGAAAATAATTCTATAAACAAATT--GAATTGCAAA-GATTGGACGTGTGTATCTCTTTCGGAAAT-AATGGTTGTTTAT-ACGAAATATTCCAATCTGTAATGTCCAATACACTACCCA--CGTCCCTTTCCTACTTTTGTGATGAGGTACTTGGGCATTCAACAAAACATTTCAATAAATGAAGATAGAAAGATTGATTTA--CTTGTTTGACCATTGTTAG-TTTAGAAATATTTCGATT-TTTTGGGATACTC-----TTTTA--------TATACATTTTTTCCAATTAACTGAAATTGAAGAATGTCAGAGGCAAACAATTATTTTCAACA-ATAGGGTCTATAA-TATATAATCTCTTATg
gi|20 : TGGGAGACA-TTTTATTTTAAATTTGCAAGAATAAATGTACTTTTTTT-----ATTAATAATCAACACAATATAGAAAAT-ACAAT
gi|3 : TTTTTA-ACAT-TT-----T-AT--GC-AATAAG-TT-G-CGTGTACACAT-C-----------TAAATAAACTGAACATAACATAATT-TGTCA-GTGTTA--CATA---TGTAAAATATAT--AAT-CTGCTC------G-------------AATATAATATATAATATCT----TT---AT--------ATAGTAGGA-----AT------GT--T-------------TC--A----T-C-T-A-----ATT--ATC------AT--T-TTT--AA---A-T---------A----A-C-----TT--T---ATT-TT--GTC-A--TTAAAATCAT---AACT----------TG--TT-----------ACAGAATACATTTAAC------T------------ACATTGCATCTTGCTTTTACATTGTTAGATT-TGTTC----AAGGGGTACAT----------AT-A--TGTTGAAAACAATTCTATATTTCTATAAC-----------TTT--------TT---ACTTGTTCGATAAAAACTGAATAAATTGGGAGACATTTTT---TTCAATTTGCAAGAATAAATACAC--TTTTT-----ATAAATGAGCAATAAAACATATAAAAT-ACAATCAATACATGACGAGCACTTAATGC-CCAACATAAT---GTTCTCTCGCTTTA-TTTCTTCTGAAATATTACATTTGTCCTTTAA-TG--GCTATAAAGCATAATAAGT--ATATTTTTAGAGTGCAA--ACAGTCATAGAACAAATACAATAT-AGTCTCTTTT-GAGTTGTTACAAAAGGT--ACACAATTCGATTTCTGACA-TGC-CACAC-GTATACAATTTTGCATTAGTAAAAATAATTCTATGAAGATTTT-TGAATTGCAAA-GACTGGATGTGTGTATCATTTATGAAAATAAATGGGTGTTTAT-ACAAAATTTTCCAGTCTGTAATGTCCAATACCTTACCAA--CGGCCCTTTCCCACTTTTGTTGTGAGGTACTGGGGCATTCAACAAAATATTTCAAAAATTGAGGGTAGAAGCATTGATTTACTTTTTTTTG-CAAATTTTAG-TTT-GAAATATTTTCATT-TCTT-GGATACTTTATTTTTTTA-TATTTTCTATACATTTTTTCCAA
gi|4 : gTCTTTTTG-AT-T-TTATCAGT-AT--TT-AGTTGC-AT-G-TGTTTACATAC-TCATAGCAAAAAAAAATAAATTGAATGCAACATCATACTA-CA-CTGTTA--CATA---TGTAATATATAT--AAT-CTGTTC------A------------------------------------------T--------ATAGT----------T------AT--T-------------GT--A----T-T-TTA-----ATT--ATT------TTCAT-TAT--TT---A-T---------T----G-C-----TA--A---ATTGTTA-GTC-G--TTATA---ATTAAAACA----------GG--TG-----------GAAGAATAGCTTAAGC------TTAAATAATTATTATATTTCACATTGTTTTTATATTTTCATATT-TTACT----AAGGGGTGTATCGAGTATAATATTA--TGTTGAAAGTAAATCAATATTTCTATTAT-----------AGT--------TC---A-TTGGTCTATGAAA-CTGAATAAATTTAGAGACA-TTTTA--TTCAATTTGCAAG--TAATTATAC--GTTTT-----ATATATAAGCAATA-------------------CAAT---------GTATCTAATGG-AAAA---AA----ATCCTCT-GTTTAAATGTCTTCTAAAATATTACATGTATCCCTTTACTGTGGCTATTAAGCATGATAAAT--ATA-TTTTAGAGTACGT--ACAAACATATAACAAATGTAGTAC-AGTTTCTTTT-GAGATGTTACCAAAATT--GCACAATTCCATTTCTTACATT-T-TACAC-GTACATAG--TTG-ATTATTGAATATTTCTCTATAAAGAATTT-TGAATTAC-TA-TAGTGGAGGTGCGAAT
gi|5 : cttA-ATAG-TT-----T-AT--TC-AAATATCTT-A-TGGCTACATAT-T-----------AAAATAAACTGAAC-----------------------------A---TGTAATATATAT--AAT----------------------------------------------------------------------AGGA-----AT------GT--T-------------CA--A----A-T-T-------ATT--ATA------AT--T-AAT--TA---ATT---------G----T-C-----T--------TT-TCTAGTC-ACTTTACTT--GT---AGCT----------TG--TT-----------A---AATACCTTGAAC------T------------ACATTCAACTTTGCTTTTATATGATTAGATA-TTTCC-----------AC-T----------AT----------------TTCTATA--------AC-----------ATT--------TT---AGTTGTTCGACAAAAACTGAATACGTTAGGAGGTA-T---------AATTTGCAAGAATAAATGTAC--GTTTT-----ATAAATAAGCAATAAAACATATATAAT-ACAGTCAATACCTGATG-------GATGT-C--------T---GTTCCCTCATTCCA-GTTCTTCTGAAATATTACATT-----TTTGACTA--GCCAT-----AT--TACAT--ATA-TTTTAGAATACATAAACAGTCATAGAACAGATGCACTAT-AGTTTATTTT-GATTTGTTACAAAAAGT--GCACAGTTCGGTT--TAACA-T-T-------G-ATATAATTTTGCACTAGTGAAAATAATTCTGTGAAAAATTT-TGAATTGC-AA-GGAT-GAGGTGTGTATCATTTATAAATAAAAATGGTTCTTTATAAAAAAATATTCAAGTCTGTAATATCCAATACACTACCCAATCGT--CTTTCCCACGTTTGCTGTTGATTGCTGGGGCATTCAACA
gi|6 : taaTTTTTTTAGATAT-TT-----TTAT--TC-AATCAT-TTTG-TGTGTACATAT-T-----------AAGATATACAGAACATAACAAAAGTATA-CA-CGGTTA--AATA---TGTA--ATATAT--AGG-CTGTTCATAAGAA-------------A-----------------TAAGATT---ATC-------ATAGAAGGA-----ATTTTTAGGT--TTAACTACATTGTATT--A----T-CAT-A-----CGT--ATC------GT--A-TAT--TA---T-T---------A----T-CTTTTTTAT-A---GTT-AT--GTTGA--TT------AT---AAC---------------TT-----------AAATAATACCTTGAAC------T------------ACATTCCACCTTTCTTTTATATTATTAGATT-TTTCC----AAGGGGTACAC----------GT-T--TGTTGAAAATAATTCAATATTTCTATAAC-----------CTT--------TT---ACTTTTTC-----------AATAAACTGGGAGCCATTTTT---TTCAATTTTCAAGAATGAA-ATAA--TTTTG-----ATA
gi|7 : gTTTA-ATATGTT-----T-AT--TA-AATCAT-TTTG-TGTGTATATAT-T-----------AAAATATACATAACATAACATAATCATG-CA-TTGTAA--CATA---TTTAATATATA---AAT-AAGA--------A-------------A-----------------TA---TG---AT--------ATA-CAGGA-----AT------GT--T-------------TT--AAGT-T-T-T-A-----ACT--A-C------AT--TGTAT--TACC-A-T---------A----T-G-----TT--ATCCATT-AT--CTT-A--CTT-----AT---AGTTATGTTGCTTATGACTT-----------AAAGAATACATTGAAC------T------------ATATTCAACCTTGCTTTTATATTATTAGATT-TTTCC----AGGGAGCA-AT----------AT-A--TGTAGAAAATAATTCAATGGTTCTAAAAC-----------CTT--------TT---ACTTGTTCAATAAACAATGAATAAATTAGAAG
gi|8 : TTAATTG--GCCACACAGCATGTTAAGA--CTA-TTTTAG--TACAT--ACAGTCACAGAACAAATGTGATC---GTTTCTTTT-GAGTTGTTAC--AAAGTAAACATAATTCGAACCCTAATA-T-TCCAAAA-GGATATAGTTTTTTATGTGTGAAAATATTTATATGTAAAATTTAAAAATTGC-AATGATAAGATGTGTGCATCATTTATG-ATAT------------------AAATATTCCAATTTGTATTGTCAAATACACTACCCA--CGTCCCTTTCCCAATTTTATTGTGA
gi|9 : TTTTTA-ACAT-TG-----T-AT--TC-ACTTAT-TT-G-TG--TACATAT-T-----------AAAATAAACAGAACATAATATGATTGTA-CA-TTGTTA--TACC---TGTGATATATA---AATGCTGCTC------ATAAATGC------A-----------------T----AT---ATACATACAAATAGAAAGA-----AT------GT--T-------------TCGAA----T-CTT-A-----ATT--ATTATTAGGAT--T-CAT--TG---A-T---------ACATTT-CAGCT-TA--A---ATT-TA--AT--A--TCT-----AT---AACT----------TG--TT-----------AAATAACATTTTGAACTAATCAT------------ACATTCAAACTTGCATTTATATTATTAGATC-TTTACACTTAATGTGTATAT----------AC-A--Tacaaactaccggtttttttcaaatatttcaccaacaattagt