lowQualScore : 11111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 22 66666666666666 4444 11 1 333333 1111 00000000000000 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111 1111111111 1 11111 11 11 666666 1 1 11
lowQualScore : 5 44 2 2 2 4 6 88888888888888 3 4444 33 0 111111 2 2222 5 22222222222222 5 6 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 888 5 777 6 55 8888888888 4 44444 1 55 5 33 9 999999 7 7 6 5 66 66 55 4
lowQualScore : . .. . . . . . .............. . .... .. . ...... . .... . .............. . . ............................................................................................................................ ... . ... . .. .......... . ..... . .. . .. . ...... . . . . .. .. .. .
lowQualScore : 0 00 5 5 5 0 0 55555555555555 0 0000 00 5 000000 5 1111 7 66666666666666 7 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 777 7 999 0 99 7777777777 3 33333 7 33 7 66 9 000000 0 2 0 0 77 00 55 0
consensus : TTAACGGCCNTGCATACNGATACATTTTAATNTCNTNTGTGCATTATGTAGATATATCTCCAGNAAACTAATTTTANGTGAANATTTTTATNNAAATNAATATTCACTGGATGCGGGAATACTAGANTTNCTAG----TTTATGAAGAGATTTATTATAAAC-TACAAC-----NTAGGATATTGT-ACGGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATC-TT--TATTT--ATTT-TT---ATATTTATA-ATTTA-------C--CTTAGCT-----GATCACGCTTAAGTTGCCATTTCATT-AAAAA-T--AAAAAAATGTATACATTCTCGCTGAAATTAATAATAAACAAGTTCTATTTACTGTTTTATTTATATTAAATTTCATAAAGTAAAACAATATTTAAAGCG--AAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
Reference ( gi|1 ) : TTAACGGCCA-GCATACCGATACATTTTAATGTCCTATGTGCATTGTGTAAATATATCTAAAGCAAA--AA--TTAAGTGAACCTTTTTATCAAAATCAATATTCACTAGATACGGGAATAC-AAAG-TCCTAG----TTTATGAAGAGATTTATTATAAAC-TACAAC-----TTG------TGT-ACGGCTATTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGTTATC-TT--TATTT--ATTT-TT---ATATCTATA-ATTTA-------C--CTTATCT-----GATCACGCTTAAGTTGCCATTTCATT-TAAAA-T--AAAAAAGTGTATACATTCTCGCTGAAATAAAAAATAAACAAGTTCTATATACTGTTTTATTTATTTTAAATTTTATAAATTAAAACAATATTTAAAAAG--AAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
gi|2 : TTAACGGCCT-GCATACCGATACATTTTAATGTCCTTTGTGCATTATGTAAATATATCT----TAAA--AATTTTAAGTGAATATTTTTATCCAAATTAATATTCACTGGATACGAGAATAC-AAAATTCCTAG----TGTATGAAGAG------TATGAACTTAGGAT-----AT-------TGT-TCAGCTGTTGACG
gi|8 : TTAACG-CCATGCATACGGATACATTTTAATTTTATATGTACATTATGTAGATATATCTCCAGAAAACTAA--TTACGTGAAAA--TTTATGGAAATAAATATTCACTAGATGCAGGAATACTAGAC-TACTGGTATATTTACACAGCGATTTGTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgtatttatttatttttatattcataatgtaccttagctgattacgcttaagttgccatttcattaaaaataaaaaattatatacattctcgctgaaattaataaacaagttctatttactgttttatttattttaaatttcattgagtaagtgaaacaaaataccggaaactgtcgatatgttacgaaagtctcgacaagta
gi|5 : gattgatcatcccagattttatgacacaggctgcacgtggccttatatcttattatcaattattatcagttaataaggggttcaatgacaatgttttgaagtgacattaaacattcaatAG----TTTATGAAGAGATTTATTATAAAT-TACAAC-----ATAGGATATTGT-ACGGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN--NNNNN--NNTTATT---TTTTTTAT--ATTTATAATTTAC--CTTAGCT-----GATCACGCTTAAGTTGCCATTTCATT-AAAAA-T--AAAAAAATGTATACATTCTCGCTGAAAT---TAATAAACAAAATCTAGTTACTGTTTTATTTTTATAAAATTTCATAAAGTAAAACAATATTTAAAGTG--AAACAAAA-TACCGGGAACTGTCGATATGTTACGAAAGTCCCGGCGAGTA
gi|3 : AG----TTTATGAAGAGATTTATTTTAAAC-TACAACAAAGGATA------TTTAACGGCAGTTGACG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTGGTATCTTTATTT-TTTTCATATTTATA-ATTTA-------C--CTTAGCT-----GATCACGCTTAAGTTGCCATTTCCTTAAAAAA-TA-AAAAAAATGTATTCACTCTGGCTGAAAT---TAATTAACAAGTTCTATTTACTGTTTTATTTATATCAAATTTCATAAAGTAAAACAATATATAAAGTG--AAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
gi|4 : G----TTTATGAAGAGATTTATTATAAAC-TACAAC-----TTAGGATATTGT-ACAGCTGTTGACG
gi|7 : G----TTTATGAAGAGATTTATTATAAAC-TAAAAC-----TTAGGATATTGT-ACGGCTGTTGACGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttttttgaatatttataatttaccttagctgatcacgcttaagttgccatttcattacaaataaataatgtatacattctagctgaaattaataaacaagttctatttactgttttattgatattaaatttcataaagtaaaacaatatataaagtgaaacaaaatactggaaactgtcgctttattacgaaagtctcggcgagta
gi|18 : ----TTTATGAAGAGATTTGTTATAAAC-TACAAC-----TCAGGATATTGT-ACGGCTGTTGACaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttatttcaatatttataatttacctaaactgatcacgcttaagttgccataaattaaaattaaaaaaatgtatacattctcgctgaaattaataaacatgttctatttactgttgtatttatattaaatttcat
gi|6 : TATGAAGAGATTTATTATAAAC-TACAAC-----TTAGGATACTGT-ACAGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN--NNNNN--NNTT-TT---TTTTTTTTGTATTTA-------TAATTTACCTAAGCTGATCACGCTTAAGTTGCCATTTCA-T-TAAAA-TTAAAAAAAGC-TATACATTTTCGCAGAAAT---TAATAAACAAGTTCTATTTACTGCTTTATTTATATTAAATTTCATAAAGTAAAACAATATTTAAATTG--AAACAAAA-TACCGGAAACTGTCGATATGTTACGGAAGTCTCGGCGAGTA
gi|2 : -TT--TATTT--ATTT-TT---ATATTCATA-ATGTA-------C--CTTAGCT-----GATTACGCTTAAGTTGCCATTTCATT-AAAAA-T--AAAAAATTATATACATTCTCGCTGAAATTAA---TAAACAAGTTCTATTTACTGTTTTATTTATTTTAAATTTCATTGAGTAAG--------T-----G--AAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGACAAGTA
gi|10 : ttaacggcctgcataccgatacattttaatgtcctttgtgcattatgtaaatatatcttaaaaattttaagtgaatatttttatccaaattaatattcactggatacgagaatacaaaattcctagtgtatgaagagtatgaacttaggatattgttcagctgttgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgtaATTT--ATTT-TT---ATATTTATA-ATTTA-------C--CTTAACT-----GATTACACTTAAGTTGCTATTTCATT-AAAAA-T--AAAAAAATGTATACATTTTCGGTGAAATTAA---TAGACAAGTTCTATTTACTGTTTTATTTATTTTAAATTTCATAAAGTAAAACAATATTTAAAGCG--AAACAAAA-CACCGGAAACTGTCGATATGTAACGAAAGTCTCGGCGAGTA
gi|7 : ATTT--ATTT-CA---ATATTTATA-ATTTA-------C--CTAAACT-----GATCACGCTTAAGTTGCCA--TAAAT-TAAAATT--AAAAAAATGTATACATTCTCGCTGAAAT---TAATAAACATGTTCTATTTACTGTTGTATTTATATTAAATTTCAT
gi|4 : gtttatgaagagatttattataaactaaaacttaggatattgtacggctgttgacgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTT---TTT-TTGA-ATATTTATA-ATTTA-------C--CTTAGCT-----GATCACGCTTAAGTTGCCATTTCATT-ACAAA-T--AAATAA-TGTATACATTCTAGCTGAAATTAA---TAAACAAGTTCTATTTACTGTTTTATTGATATTAAATTTCATAAAGTAAAACAATATATAAAGTG--AAACAAAA-TACTGGAAACTGTCGCTTTATTACGAAAGTCTCGGCGAGTA
gi|13 : gtttatgaagagatttattataaactacaacttaggatattgtacagctgttgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAAACAAGTTATATTTACTGTATTATTCATTTAAAATTTCATAAAGTAAAACAATA----AAGCG--AAACAAAA-TACCGGAAACTGTCGATATGTTATGAAAGTCTCGGCGAGTA
gi|9 : TAAAAAT--AAA--AAA-TACCGGAGACTTTCGAAA-GT-ACGAAAGTATCGGCGAGTA
gi|19 : aaaaaAAAGCG--AAATAAAA-TACCGGAAACTGTCGATATGTTGCAAAAGTCTCGGCGtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacgggcattacataacataacgtctgtggatattggcgcaagatgcgattccttttttccctaattccttgg
gi|17 : AAAGTAAAACAAAAATACCGGAGGCTGCCGATATGTTACAAAAGAATCGGCCAGT
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGGTATAACAAAACATTTTAGGATATTGGCACCAGTTGTGATTCCTTTTTACTAAAATTCCTT
Unaligned ( gi|12 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATTGGTATAACATAATAACGTCTTTGGATATTGGTACCAGTTGCGATTGCTTTTCTTTCTAATTTCTCG
Unaligned ( gi|14 ): AGGTTTAATGACCCCAGGGTTTATGACAGGATGTTATATCACATAGTATTATGCCTTATTACTAATTTAAACATTTTCAGTTAATTAGGGTTTCAATATCAATG
Unaligned ( gi|15 ): GCATAACATAACATTGGGTATCGGCGTCAGTTGCGATTCCGTCTCTCTATTCTTCCTGGTTTG
Unaligned ( gi|16 ): TAACATAACGTTTTTGGATATCGGCGCCAGTTGCGATTCCTTTTCTCTCTAATTCCTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 22 33 111 2 1111 1111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11 111 11111111 111111 222
lowQualScore : 6 11 1 1 1 1 0 11 1 00 333 1 1 7 22 1 0 0 3 0 6666 0000 2 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 8 11 66 5 555 88888888 444444 5 5 2 444 3 2 33 2 3
lowQualScore : . .. . . . . . .. . .. ... . . . .. . . . . . .... .... . .................................................................................................................... . .. .. . ... ........ ...... . . . ... . . .. . .
lowQualScore : 7 33 0 0 0 0 7 77 0 33 777 0 0 3 00 0 7 7 7 7 7777 6666 8 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 00 99 0 666 11111111 444444 0 0 2 888 2 6 66 1 6
consensus : TTAACGGCCATGCATACCGATACATTTTAATGTCCTATGTGCATTATGTAAATATATCT--AGNAAA--AATTTTAAGTGAANATTTTTATCGAAATNAATATTCACTAGATACGGGAATAC-AAANTTCCTAG----TTTATGAAGAGATTTATTATAAACTACAACTTAGGATATTGTACGGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGTTATC-TT--TATTT--ATTT-TT---ATATTT--------AT------AATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCATT-AAAAAT-AAAAAAATGTATACATTCTCGCTGAAAT-AATAATAAACAAGTTCTATTTACTGTTTTATTTATNTTAAATTTCATAAAGTAAAACAATATTTAAAGCGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
Reference ( family-649 ) : TTAACGGCCNTGCATACNGATACATTTTAATNTCNTNTGTGCATTATGTAGATATATCTCCAGNAAACTAATTTTANGTGAANATTTTTATNNAAATNAATATTCACTGGATGCGGGAATACTAGANTTNCTAG----TTTATGAAGAGATTTATTATAAACTACAACNTAGGATATTGTACGGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATC-TT--TATTT--ATTT-TT---ATATTT--------AT------AATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCATT-AAAAAT-AAAAAAATGTATACATTCTCGCTGAAATTAATAATAAACAAGTTCTATTTACTGTTTTATTTATATTAAATTTCATAAAGTAAAACAATATTTAAAGCGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
gi|1 : TTAACGGCCA-GCATACCGATACATTTTAATGTCCTATGTGCATTGTGTAAATATATCTAAAGCAAA--AATT--AAGTGAACCTTTTTATCAAAATCAATATTCACTAGATACGGGAATAC-AAAGT-CCTAG----TTTATGAAGAGATTTATTATAAACTACAACTTG------TGTACGGCTATTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGTTATC-TT--TATTT--ATTT-TT---ATATCT--------AT------AATTTACCTTATCTGATCACGCTTAAGTTGCCATTTCATT-TAAAAT-AAAAAAGTGTATACATTCTCGCTGAAATAAAAAATAAACAAGTTCTATATACTGTTTTATTTATTTTAAATTTTATAAATTAAAACAATATTTAAAAAGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
gi|10 : ATTT--ATTT-TT---ATATTT--------AT------AATTTACCTTAACTGATTACACTTAAGTTGCTATTTCATT-AAAAAT-AAAAAAATGTATACATTTTCGGTGAAATTAATAG---ACAAGTTCTATTTACTGTTTTATTTATTTTAAATTTCATAAAGTAAAACAATATTTAAAGCGAAACAAAA-CACCGGAAACTGTCGATATGTAACGAAAGTCTCGGCGAGTA
gi|13 : TAAACAAGTTATATTTACTGTATTATTCATTTAAAATTTCATAAAGTAAAACAATA----AAGCGAAACAAAA-TACCGGAAACTGTCGATATGTTATGAAAGTCTCGGCGAGTA
gi|17 : AAAGTAAAACAAAAATACCGGAGGCTGCCGATATGTTACAAAAGAATCGGCCAGT
gi|18 : ----TTTATGAAGAGATTTGTTATAAACTACAACTCAGGATATTGTACGGCTGTTGAC
gi|19 : AAAGCGAAATAAAA-TACCGGAAACTGTCGATATGTTGCAAAAGTCTCGGCG
gi|2 : TTAACGGCC-TGCATACCGATACATTTTAATGTCCTTTGTGCATTATGTAAATATATCT----TAAA--AATTTTAAGTGAATATTTTTATCCAAATTAATATTCACTGGATACGAGAATAC-AAAATTCCTAG----TGTATGAAGAG------TATGAACT------TAGGATATTGTTCAGCTGTTGACG
gi|2 : -TT--TATTT--ATTT-TT---ATATTC--------AT------AATGTACCTTAGCTGATTACGCTTAAGTTGCCATTTCATT-AAAAAT-AAAAAATTATATACATTCTCGCTGAAAT---TAATAAACAAGTTCTATTTACTGTTTTATTTATTTTAAATTTCATTGAGT-------------AAGTGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGACAAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgtatttatttatttttatattcataatgtaccttagctgattacgcttaagttgccatttcattaaaaataaaaaattatatacattctcgctgaaattaataaacaagttctatttactgttttatttattttaaatttcattgagtaagtgaaacaaaataccggaaactgtcgatatgttacgaaagtctcgacaagta
gi|3 : ttaacggcctgcataccgatacattttaatgtcctttgtgcattatgtaaatatatcttaaaaattttaagtgaatatttttatccaaattaatattcactggatacgagaatacaaaattcctagtgtatgaagagtatgaacttaggatattgttcagctgttgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgtaAG----TTTATGAAGAGATTTATTTTAAACTACAACAAAGGATATTTAACGGCAGTTGACG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTGGTATCTTTATTT-TTTTCATATTT--------AT------AATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCCTTAAAAAATAAAAAAAATGTATTCACTCTGGCTGAAATTAAT--T-AACAAGTTCTATTTACTGTTTTATTTATATCAAATTTCATAAAGTAAAACAATATATAAAGTGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
gi|4 : G----TTTATGAAGAGATTTATTATAAACTACAACTTAGGATATTGTACAGCTGTTGACG
gi|4 : TTT---TTT-TTGA-ATATTT--------AT------AATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCATT-ACAAAT-AAATAA-TGTATACATTCTAGCTGAAATTAAT---AAACAAGTTCTATTTACTGTTTTATTGATATTAAATTTCATAAAGTAAAACAATATATAAAGTGAAACAAAA-TACTGGAAACTGTCGCTTTATTACGAAAGTCTCGGCGAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttttttgaatatttataatttaccttagctgatcacgcttaagttgccatttcattacaaataaataatgtatacattctagctgaaattaataaacaagttctatttactgttttattgatattaaatttcataaagtaaaacaatatataaagtgaaacaaaatactggaaactgtcgctttattacgaaagtctcggcgagta
gi|5 : gtttatgaagagatttattataaactacaacttaggatattgtacagctgttgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAG----TTTATGAAGAGATTTATTATAAATTACAACATAGGATATTGTACGGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN--NNNNN--NNTTATT---TTTTTT--------ATATTTATAATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCATT-AAAAAT-AAAAAAATGTATACATTCTCGCTGAAAT---TAATAAACAAAATCTAGTTACTGTTTTATTTTTATAAAATTTCATAAAGTAAAACAATATTTAAAGTGAAACAAAA-TACCGGGAACTGTCGATATGTTACGAAAGTCCCGGCGAGTA
gi|6 : TATGAAGAGATTTATTATAAACTACAACTTAGGATACTGTACAGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN--NNNNN--NNTT-TT---TTTTTTTTGTATTTAT------AATTTACCTAAGCTGATCACGCTTAAGTTGCCATTTCATT-AAAATT-AAAAAAAGCTATACATTTTCGCAGAAAT---TAATAAACAAGTTCTATTTACTGCTTTATTTATATTAAATTTCATAAAGTAAAACAATATTTAAATTGAAACAAAA-TACCGGAAACTGTCGATATGTTACGGAAGTCTCGGCGAGTA
gi|7 : G----TTTATGAAGAGATTTATTATAAACTAAAACTTAGGATATTGTACGGCTGTTGACG
gi|7 : ATTT--ATTT-CA---ATATTT--------AT------AATTTACCTAAACTGATCACGCTTAAGTTGCCA-TAAATT-AAAATT-AAAAAAATGTATACATTCTCGCTGAAAT---TAATAAACATGTTCTATTTACTGTTGTATTTATATTAAATTTCATaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttatttcaatatttataatttacctaaactgatcacgcttaagttgccataaattaaaattaaaaaaatgtatacattctcgctgaaattaataaacatgttctatttactgttgtatttatattaaatttcat
gi|8 : gtttatgaagagatttattataaactaaaacttaggatattgtacggctgttgacgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAACG-CCATGCATACGGATACATTTTAATTTTATATGTACATTATGTAGATATATCTCCAGAAAACTAA--TTACGTGAAAA--TTTATGGAAATAAATATTCACTAGATGCAGGAATACTAGAC-TACTGGTATATTTACACAGCGATTTGTT
gi|9 : gattgatcatcccagattttatgacacaggctgcacgtggccttatatcttattatcaattattatcagttaataaggggttcaatgacaatgttttgaagtgacattaaacattcaatAAAA-TACCGGAGACTTTCGAAA-GT-ACGAAAGTATCGGCGAGTA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGGTATAACAAAACATTTTAGGATATTGGCACCAGTTGTGATTCCTTTTTACTAAAATTCCTT
Unaligned ( gi|12 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATTGGTATAACATAATAACGTCTTTGGATATTGGTACCAGTTGCGATTGCTTTTCTTTCTAATTTCTCG
Unaligned ( gi|14 ): AGGTTTAATGACCCCAGGGTTTATGACAGGATGTTATATCACATAGTATTATGCCTTATTACTAATTTAAACATTTTCAGTTAATTAGGGTTTCAATATCAATG
Unaligned ( gi|15 ): GCATAACATAACATTGGGTATCGGCGTCAGTTGCGATTCCGTCTCTCTATTCTTCCTGGTTTG
Unaligned ( gi|16 ): TAACATAACGTTTTTGGATATCGGCGCCAGTTGCGATTCCTTTTCTCTCTAATTCCTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 44444 11 111 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 111 11111111 111111 44
lowQualScore : 6 44 44444 1 88 333 1 7 3 1 1 7 0000 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 8 11 66 5 555 88888888 444444 5 5 2 55 4 1 33 2 3
lowQualScore : . .. ..... . .. ... . . . . . . .... .............................................................................................................. . .. .. . ... ........ ...... . . . .. . . .. . .
lowQualScore : 7 77 00000 0 33 777 0 3 7 0 0 3 6666 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 00 99 0 666 11111111 444444 0 0 2 99 4 0 66 1 6
consensus : TTAACGGCCATGCATACCGATACATTTTAATGTCCTATGTGCATTATGTAAATATATCT--A--GNAAA--AATTTTAAGTGAANATTTTTATCGAAATNAATATTCACTAGATACGGGAATACAAAATTCCTAG----TTTATGAAGAGATTTATTATAAACTACAACTTAGGATATTGTACGGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGTTATC-TT--TATTT--ATTT-TT---ATATTT--------AT------AATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCATT-AAAAAT-AAAAAAATGTATACATTCTCGCTGAAAT--TAA-TAAACAAGTTCTATTTACTGTTTTATTTATNTTAAATTTCATAAAGTAAAACAATATTTAAAGCGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
Reference ( family-649 ) : TTAACGGCCATGCATACCGATACATTTTAATGTCCTATGTGCATTATGTAAATATATCT--A--GNAAA--AATTTTAAGTGAANATTTTTATCGAAATNAATATTCACTAGATACGGGAATACAAANTTCCTAG----TTTATGAAGAGATTTATTATAAACTACAACTTAGGATATTGTACGGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGTTATC-TT--TATTT--ATTT-TT---ATATTT--------AT------AATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCATT-AAAAAT-AAAAAAATGTATACATTCTCGCTGAAATAATAA-TAAACAAGTTCTATTTACTGTTTTATTTATNTTAAATTTCATAAAGTAAAACAATATTTAAAGCGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
gi|1 : TTAACGGCCA-GCATACCGATACATTTTAATGTCCTATGTGCATTGTGTAAATATATCT--AAAGCAAA--AATT--AAGTGAACCTTTTTATCAAAATCAATATTCACTAGATACGGGAATACAAAGT-CCTAG----TTTATGAAGAGATTTATTATAAACTACAACTTG------TGTACGGCTATTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGTTATC-TT--TATTT--ATTT-TT---ATATCT--------AT------AATTTACCTTATCTGATCACGCTTAAGTTGCCATTTCATT-TAAAAT-AAAAAAGTGTATACATTCTCGCTGAAATAAAAAATAAACAAGTTCTATATACTGTTTTATTTATTTTAAATTTTATAAATTAAAACAATATTTAAAAAGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
gi|10 : ATTT--ATTT-TT---ATATTT--------AT------AATTTACCTTAACTGATTACACTTAAGTTGCTATTTCATT-AAAAAT-AAAAAAATGTATACATTTTCGGTGAAAT--TAA-TAGACAAGTTCTATTTACTGTTTTATTTATTTTAAATTTCATAAAGTAAAACAATATTTAAAGCGAAACAAAA-CACCGGAAACTGTCGATATGTAACGAAAGTCTCGGCGAGTA
gi|13 : -TAAACAAGTTATATTTACTGTATTATTCATTTAAAATTTCATAAAGTAAAACAATA----AAGCGAAACAAAA-TACCGGAAACTGTCGATATGTTATGAAAGTCTCGGCGAGTA
gi|17 : AAAGTAAAACAAAAATACCGGAGGCTGCCGATATGTTACAAAAGAATCGGCCAGT
gi|18 : ----TTTATGAAGAGATTTGTTATAAACTACAACTCAGGATATTGTACGGCTGTTGAC
gi|19 : AAAGCGAAATAAAA-TACCGGAAACTGTCGATATGTTGCAAAAGTCTCGGCG
gi|2 : TTAACGGCC-TGCATACCGATACATTTTAATGTCCTTTGTGCATTATGTAAATATATCT------TAAA--AATTTTAAGTGAATATTTTTATCCAAATTAATATTCACTGGATACGAGAATACAAAATTCCTAG----TGTATGAAGAG------TATG------AACTTAGGATATTGTTCAGCTGTTGACG
gi|2 : -TT--TATTT--ATTT-TT---ATATTC--------AT------AATGTACCTTAGCTGATTACGCTTAAGTTGCCATTTCATT-AAAAAT-AAAAAATTATATACATTCTCGCTGAAAT--TAA-TAAACAAGTTCTATTTACTGTTTTATTTATTTTAAATTTCATTGAGT-------------AAGTGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGACAAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgtatttatttatttttatattcataatgtaccttagctgattacgcttaagttgccatttcattaaaaataaaaaattatatacattctcgctgaaattaataaacaagttctatttactgttttatttattttaaatttcattgagtaagtgaaacaaaataccggaaactgtcgatatgttacgaaagtctcgacaagta
gi|3 : ttaacggcctgcataccgatacattttaatgtcctttgtgcattatgtaaatatatcttaaaaattttaagtgaatatttttatccaaattaatattcactggatacgagaatacaaaattcctagtgtatgaagagtatgaacttaggatattgttcagctgttgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgtaAG----TTTATGAAGAGATTTATTTTAAACTACAACAAAGGATATTTAACGGCAGTTGACG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTGGTATCTTTATTT-TTTTCATATTT--------AT------AATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCCTTAAAAAATAAAAAAAATGTATTCACTCTGGCTGAAAT--TAA-TTAACAAGTTCTATTTACTGTTTTATTTATATCAAATTTCATAAAGTAAAACAATATATAAAGTGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
gi|4 : G----TTTATGAAGAGATTTATTATAAACTACAACTTAGGATATTGTACAGCTGTTGACG
gi|4 : TTT---TTT-TTGA-ATATTT--------AT------AATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCATT-ACAAAT-AAATAA-TGTATACATTCTAGCTGAAAT--TAA-TAAACAAGTTCTATTTACTGTTTTATTGATATTAAATTTCATAAAGTAAAACAATATATAAAGTGAAACAAAA-TACTGGAAACTGTCGCTTTATTACGAAAGTCTCGGCGAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttttttgaatatttataatttaccttagctgatcacgcttaagttgccatttcattacaaataaataatgtatacattctagctgaaattaataaacaagttctatttactgttttattgatattaaatttcataaagtaaaacaatatataaagtgaaacaaaatactggaaactgtcgctttattacgaaagtctcggcgagta
gi|5 : gtttatgaagagatttattataaactacaacttaggatattgtacagctgttgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAG----TTTATGAAGAGATTTATTATAAATTACAACATAGGATATTGTACGGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN--NNNNN--NNTTATT---TTTTTT--------ATATTTATAATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCATT-AAAAAT-AAAAAAATGTATACATTCTCGCTGAAAT--TAA-TAAACAAAATCTAGTTACTGTTTTATTTTTATAAAATTTCATAAAGTAAAACAATATTTAAAGTGAAACAAAA-TACCGGGAACTGTCGATATGTTACGAAAGTCCCGGCGAGTA
gi|6 : TATGAAGAGATTTATTATAAACTACAACTTAGGATACTGTACAGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN--NNNNN--NNTT-TT---TTTTTTTTGTATTTAT------AATTTACCTAAGCTGATCACGCTTAAGTTGCCATTTCATT-AAAATT-AAAAAAAGCTATACATTTTCGCAGAAAT--TAA-TAAACAAGTTCTATTTACTGCTTTATTTATATTAAATTTCATAAAGTAAAACAATATTTAAATTGAAACAAAA-TACCGGAAACTGTCGATATGTTACGGAAGTCTCGGCGAGTA
gi|7 : G----TTTATGAAGAGATTTATTATAAACTAAAACTTAGGATATTGTACGGCTGTTGACG
gi|7 : ATTT--ATTT-CA---ATATTT--------AT------AATTTACCTAAACTGATCACGCTTAAGTTGCCA-TAAATT-AAAATT-AAAAAAATGTATACATTCTCGCTGAAAT--TAA-TAAACATGTTCTATTTACTGTTGTATTTATATTAAATTTCATaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttatttcaatatttataatttacctaaactgatcacgcttaagttgccataaattaaaattaaaaaaatgtatacattctcgctgaaattaataaacatgttctatttactgttgtatttatattaaatttcat
gi|8 : gtttatgaagagatttattataaactaaaacttaggatattgtacggctgttgacgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAACG-CCATGCATACGGATACATTTTAATTTTATATGTACATTATGTAGATATATCTCCA--GAAAACTAA--TTACGTGAAAA--TTTATGGAAATAAATATTCACTAGATGCAGGAATACTAGACTACTGGTATATTTACACAGCGATTTGTT
gi|9 : gattgatcatcccagattttatgacacaggctgcacgtggccttatatcttattatcaattattatcagttaataaggggttcaatgacaatgttttgaagtgacattaaacattcaatAAAA-TACCGGAGACTTTCGAAA-GT-ACGAAAGTATCGGCGAGTA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGGTATAACAAAACATTTTAGGATATTGGCACCAGTTGTGATTCCTTTTTACTAAAATTCCTT
Unaligned ( gi|12 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATTGGTATAACATAATAACGTCTTTGGATATTGGTACCAGTTGCGATTGCTTTTCTTTCTAATTTCTCG
Unaligned ( gi|14 ): AGGTTTAATGACCCCAGGGTTTATGACAGGATGTTATATCACATAGTATTATGCCTTATTACTAATTTAAACATTTTCAGTTAATTAGGGTTTCAATATCAATG
Unaligned ( gi|15 ): GCATAACATAACATTGGGTATCGGCGTCAGTTGCGATTCCGTCTCTCTATTCTTCCTGGTTTG
Unaligned ( gi|16 ): TAACATAACGTTTTTGGATATCGGCGCCAGTTGCGATTCCTTTTCTCTCTAATTCCTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 44444 11 111 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 111 11111111 111111
lowQualScore : 6 44 44444 1 88 333 1 7 3 1 7 0000 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 8 11 66 5 555 88888888 444444 5 5 2 777 1 33 2 3
lowQualScore : . .. ..... . .. ... . . . . . .... .............................................................................................................. . .. .. . ... ........ ...... . . . ... . .. . .
lowQualScore : 7 77 00000 0 33 777 0 3 7 0 3 6666 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 00 99 0 666 11111111 444444 0 0 2 888 0 66 1 6
consensus : TTAACGGCCATGCATACCGATACATTTTAATGTCCTATGTGCATTATGTAAATATATCT--A--GNAAA--AATTTTAAGTGAANATTTTTATCGAAATNAATATTCACTAGATACGGGAATACAAAATTCCTAG----TTTATGAAGAGATTTATTATAAACTACAACTTAGGATATTGTACGGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGTTATC-TT--TATTT--ATTT-TT---ATATTT--------AT------AATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCATT-AAAAAT-AAAAAAATGTATACATTCTCGCTGAAATTAA---TAAACAAGTTCTATTTACTGTTTTATTTATNTTAAATTTCATAAAGTAAAACAATATTTAAAGCGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
Reference ( family-649 ) : TTAACGGCCATGCATACCGATACATTTTAATGTCCTATGTGCATTATGTAAATATATCT--A--GNAAA--AATTTTAAGTGAANATTTTTATCGAAATNAATATTCACTAGATACGGGAATACAAAATTCCTAG----TTTATGAAGAGATTTATTATAAACTACAACTTAGGATATTGTACGGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGTTATC-TT--TATTT--ATTT-TT---ATATTT--------AT------AATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCATT-AAAAAT-AAAAAAATGTATACATTCTCGCTGAAATTAA---TAAACAAGTTCTATTTACTGTTTTATTTATNTTAAATTTCATAAAGTAAAACAATATTTAAAGCGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
gi|1 : TTAACGGCCA-GCATACCGATACATTTTAATGTCCTATGTGCATTGTGTAAATATATCT--AAAGCAAA--AATT--AAGTGAACCTTTTTATCAAAATCAATATTCACTAGATACGGGAATACAAAGT-CCTAG----TTTATGAAGAGATTTATTATAAACTACAACTTG------TGTACGGCTATTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGTTATC-TT--TATTT--ATTT-TT---ATATCT--------AT------AATTTACCTTATCTGATCACGCTTAAGTTGCCATTTCATT-TAAAAT-AAAAAAGTGTATACATTCTCGCTGAAATAAAAAATAAACAAGTTCTATATACTGTTTTATTTATTTTAAATTTTATAAATTAAAACAATATTTAAAAAGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
gi|10 : ATTT--ATTT-TT---ATATTT--------AT------AATTTACCTTAACTGATTACACTTAAGTTGCTATTTCATT-AAAAAT-AAAAAAATGTATACATTTTCGGTGAAATTAA---TAGACAAGTTCTATTTACTGTTTTATTTATTTTAAATTTCATAAAGTAAAACAATATTTAAAGCGAAACAAAA-CACCGGAAACTGTCGATATGTAACGAAAGTCTCGGCGAGTA
gi|13 : ---TAAACAAGTTATATTTACTGTATTATTCATTTAAAATTTCATAAAGTAAAACAATA----AAGCGAAACAAAA-TACCGGAAACTGTCGATATGTTATGAAAGTCTCGGCGAGTA
gi|17 : AAAGTAAAACAAAAATACCGGAGGCTGCCGATATGTTACAAAAGAATCGGCCAGT
gi|18 : ----TTTATGAAGAGATTTGTTATAAACTACAACTCAGGATATTGTACGGCTGTTGAC
gi|19 : AAAGCGAAATAAAA-TACCGGAAACTGTCGATATGTTGCAAAAGTCTCGGCG
gi|2 : TTAACGGCC-TGCATACCGATACATTTTAATGTCCTTTGTGCATTATGTAAATATATCT------TAAA--AATTTTAAGTGAATATTTTTATCCAAATTAATATTCACTGGATACGAGAATACAAAATTCCTAG----TGTATGAAGAG------TATG------AACTTAGGATATTGTTCAGCTGTTGACG
gi|2 : -TT--TATTT--ATTT-TT---ATATTC--------AT------AATGTACCTTAGCTGATTACGCTTAAGTTGCCATTTCATT-AAAAAT-AAAAAATTATATACATTCTCGCTGAAATTAA---TAAACAAGTTCTATTTACTGTTTTATTTATTTTAAATTTCATTGAGT-------------AAGTGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGACAAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgtatttatttatttttatattcataatgtaccttagctgattacgcttaagttgccatttcattaaaaataaaaaattatatacattctcgctgaaattaataaacaagttctatttactgttttatttattttaaatttcattgagtaagtgaaacaaaataccggaaactgtcgatatgttacgaaagtctcgacaagta
gi|3 : ttaacggcctgcataccgatacattttaatgtcctttgtgcattatgtaaatatatcttaaaaattttaagtgaatatttttatccaaattaatattcactggatacgagaatacaaaattcctagtgtatgaagagtatgaacttaggatattgttcagctgttgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgtaAG----TTTATGAAGAGATTTATTTTAAACTACAACAAAGGATATTTAACGGCAGTTGACG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTGGTATCTTTATTT-TTTTCATATTT--------AT------AATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCCTTAAAAAATAAAAAAAATGTATTCACTCTGGCTGAAATTAA---TTAACAAGTTCTATTTACTGTTTTATTTATATCAAATTTCATAAAGTAAAACAATATATAAAGTGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
gi|4 : G----TTTATGAAGAGATTTATTATAAACTACAACTTAGGATATTGTACAGCTGTTGACG
gi|4 : TTT---TTT-TTGA-ATATTT--------AT------AATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCATT-ACAAAT-AAATAA-TGTATACATTCTAGCTGAAATTAA---TAAACAAGTTCTATTTACTGTTTTATTGATATTAAATTTCATAAAGTAAAACAATATATAAAGTGAAACAAAA-TACTGGAAACTGTCGCTTTATTACGAAAGTCTCGGCGAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttttttgaatatttataatttaccttagctgatcacgcttaagttgccatttcattacaaataaataatgtatacattctagctgaaattaataaacaagttctatttactgttttattgatattaaatttcataaagtaaaacaatatataaagtgaaacaaaatactggaaactgtcgctttattacgaaagtctcggcgagta
gi|5 : gtttatgaagagatttattataaactacaacttaggatattgtacagctgttgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAG----TTTATGAAGAGATTTATTATAAATTACAACATAGGATATTGTACGGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN--NNNNN--NNTTATT---TTTTTT--------ATATTTATAATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCATT-AAAAAT-AAAAAAATGTATACATTCTCGCTGAAATTAA---TAAACAAAATCTAGTTACTGTTTTATTTTTATAAAATTTCATAAAGTAAAACAATATTTAAAGTGAAACAAAA-TACCGGGAACTGTCGATATGTTACGAAAGTCCCGGCGAGTA
gi|6 : TATGAAGAGATTTATTATAAACTACAACTTAGGATACTGTACAGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN--NNNNN--NNTT-TT---TTTTTTTTGTATTTAT------AATTTACCTAAGCTGATCACGCTTAAGTTGCCATTTCATT-AAAATT-AAAAAAAGCTATACATTTTCGCAGAAATTAA---TAAACAAGTTCTATTTACTGCTTTATTTATATTAAATTTCATAAAGTAAAACAATATTTAAATTGAAACAAAA-TACCGGAAACTGTCGATATGTTACGGAAGTCTCGGCGAGTA
gi|7 : G----TTTATGAAGAGATTTATTATAAACTAAAACTTAGGATATTGTACGGCTGTTGACG
gi|7 : ATTT--ATTT-CA---ATATTT--------AT------AATTTACCTAAACTGATCACGCTTAAGTTGCCATA-AATT-AAAATT-AAAAAAATGTATACATTCTCGCTGAAATTAA---TAAACATGTTCTATTTACTGTTGTATTTATATTAAATTTCATaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttatttcaatatttataatttacctaaactgatcacgcttaagttgccataaattaaaattaaaaaaatgtatacattctcgctgaaattaataaacatgttctatttactgttgtatttatattaaatttcat
gi|8 : gtttatgaagagatttattataaactaaaacttaggatattgtacggctgttgacgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAACG-CCATGCATACGGATACATTTTAATTTTATATGTACATTATGTAGATATATCTCCA--GAAAACTAA--TTACGTGAAAA--TTTATGGAAATAAATATTCACTAGATGCAGGAATACTAGACTACTGGTATATTTACACAGCGATTTGTT
gi|9 : gattgatcatcccagattttatgacacaggctgcacgtggccttatatcttattatcaattattatcagttaataaggggttcaatgacaatgttttgaagtgacattaaacattcaatAAAA-TACCGGAGACTTTCGAAA-GT-ACGAAAGTATCGGCGAGTA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGGTATAACAAAACATTTTAGGATATTGGCACCAGTTGTGATTCCTTTTTACTAAAATTCCTT
Unaligned ( gi|12 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATTGGTATAACATAATAACGTCTTTGGATATTGGTACCAGTTGCGATTGCTTTTCTTTCTAATTTCTCG
Unaligned ( gi|14 ): AGGTTTAATGACCCCAGGGTTTATGACAGGATGTTATATCACATAGTATTATGCCTTATTACTAATTTAAACATTTTCAGTTAATTAGGGTTTCAATATCAATG
Unaligned ( gi|15 ): GCATAACATAACATTGGGTATCGGCGTCAGTTGCGATTCCGTCTCTCTATTCTTCCTGGTTTG
Unaligned ( gi|16 ): TAACATAACGTTTTTGGATATCGGCGCCAGTTGCGATTCCTTTTCTCTCTAATTCCTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 44444 11 111 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 111 11111111 111111
lowQualScore : 6 44 44444 1 88 333 1 7 3 1 7 0000 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 8 11 66 5 555 88888888 444444 5 5 2 777 1 33 2 3
lowQualScore : . .. ..... . .. ... . . . . . .... .............................................................................................................. . .. .. . ... ........ ...... . . . ... . .. . .
lowQualScore : 7 77 00000 0 33 777 0 3 7 0 3 6666 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 00 99 0 666 11111111 444444 0 0 2 888 0 66 1 6
consensus : TTAACGGCCATGCATACCGATACATTTTAATGTCCTATGTGCATTATGTAAATATATCT--A--GNAAA--AATTTTAAGTGAANATTTTTATCGAAATNAATATTCACTAGATACGGGAATACAAAATTCCTAG----TTTATGAAGAGATTTATTATAAACTACAACTTAGGATATTGTACGGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGTTATC-TT--TATTT--ATTT-TT---ATATTT--------AT------AATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCATT-AAAAAT-AAAAAAATGTATACATTCTCGCTGAAATTAA---TAAACAAGTTCTATTTACTGTTTTATTTATNTTAAATTTCATAAAGTAAAACAATATTTAAAGCGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
Reference ( family-649 ) : TTAACGGCCATGCATACCGATACATTTTAATGTCCTATGTGCATTATGTAAATATATCT--A--GNAAA--AATTTTAAGTGAANATTTTTATCGAAATNAATATTCACTAGATACGGGAATACAAAATTCCTAG----TTTATGAAGAGATTTATTATAAACTACAACTTAGGATATTGTACGGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGTTATC-TT--TATTT--ATTT-TT---ATATTT--------AT------AATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCATT-AAAAAT-AAAAAAATGTATACATTCTCGCTGAAATTAA---TAAACAAGTTCTATTTACTGTTTTATTTATNTTAAATTTCATAAAGTAAAACAATATTTAAAGCGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
gi|1 : TTAACGGCCA-GCATACCGATACATTTTAATGTCCTATGTGCATTGTGTAAATATATCT--AAAGCAAA--AATT--AAGTGAACCTTTTTATCAAAATCAATATTCACTAGATACGGGAATACAAAGT-CCTAG----TTTATGAAGAGATTTATTATAAACTACAACTTG------TGTACGGCTATTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGTTATC-TT--TATTT--ATTT-TT---ATATCT--------AT------AATTTACCTTATCTGATCACGCTTAAGTTGCCATTTCATT-TAAAAT-AAAAAAGTGTATACATTCTCGCTGAAATAAAAAATAAACAAGTTCTATATACTGTTTTATTTATTTTAAATTTTATAAATTAAAACAATATTTAAAAAGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
gi|10 : ATTT--ATTT-TT---ATATTT--------AT------AATTTACCTTAACTGATTACACTTAAGTTGCTATTTCATT-AAAAAT-AAAAAAATGTATACATTTTCGGTGAAATTAA---TAGACAAGTTCTATTTACTGTTTTATTTATTTTAAATTTCATAAAGTAAAACAATATTTAAAGCGAAACAAAA-CACCGGAAACTGTCGATATGTAACGAAAGTCTCGGCGAGTA
gi|13 : ---TAAACAAGTTATATTTACTGTATTATTCATTTAAAATTTCATAAAGTAAAACAATA----AAGCGAAACAAAA-TACCGGAAACTGTCGATATGTTATGAAAGTCTCGGCGAGTA
gi|17 : AAAGTAAAACAAAAATACCGGAGGCTGCCGATATGTTACAAAAGAATCGGCCAGT
gi|18 : ----TTTATGAAGAGATTTGTTATAAACTACAACTCAGGATATTGTACGGCTGTTGAC
gi|19 : AAAGCGAAATAAAA-TACCGGAAACTGTCGATATGTTGCAAAAGTCTCGGCG
gi|2 : TTAACGGCC-TGCATACCGATACATTTTAATGTCCTTTGTGCATTATGTAAATATATCT------TAAA--AATTTTAAGTGAATATTTTTATCCAAATTAATATTCACTGGATACGAGAATACAAAATTCCTAG----TGTATGAAGAG------TATG------AACTTAGGATATTGTTCAGCTGTTGACG
gi|2 : -TT--TATTT--ATTT-TT---ATATTC--------AT------AATGTACCTTAGCTGATTACGCTTAAGTTGCCATTTCATT-AAAAAT-AAAAAATTATATACATTCTCGCTGAAATTAA---TAAACAAGTTCTATTTACTGTTTTATTTATTTTAAATTTCATTGAGT-------------AAGTGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGACAAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgtatttatttatttttatattcataatgtaccttagctgattacgcttaagttgccatttcattaaaaataaaaaattatatacattctcgctgaaattaataaacaagttctatttactgttttatttattttaaatttcattgagtaagtgaaacaaaataccggaaactgtcgatatgttacgaaagtctcgacaagta
gi|3 : ttaacggcctgcataccgatacattttaatgtcctttgtgcattatgtaaatatatcttaaaaattttaagtgaatatttttatccaaattaatattcactggatacgagaatacaaaattcctagtgtatgaagagtatgaacttaggatattgttcagctgttgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgtaAG----TTTATGAAGAGATTTATTTTAAACTACAACAAAGGATATTTAACGGCAGTTGACG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTGGTATCTTTATTT-TTTTCATATTT--------AT------AATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCCTTAAAAAATAAAAAAAATGTATTCACTCTGGCTGAAATTAA---TTAACAAGTTCTATTTACTGTTTTATTTATATCAAATTTCATAAAGTAAAACAATATATAAAGTGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
gi|4 : G----TTTATGAAGAGATTTATTATAAACTACAACTTAGGATATTGTACAGCTGTTGACG
gi|4 : TTT---TTT-TTGA-ATATTT--------AT------AATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCATT-ACAAAT-AAATAA-TGTATACATTCTAGCTGAAATTAA---TAAACAAGTTCTATTTACTGTTTTATTGATATTAAATTTCATAAAGTAAAACAATATATAAAGTGAAACAAAA-TACTGGAAACTGTCGCTTTATTACGAAAGTCTCGGCGAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttttttgaatatttataatttaccttagctgatcacgcttaagttgccatttcattacaaataaataatgtatacattctagctgaaattaataaacaagttctatttactgttttattgatattaaatttcataaagtaaaacaatatataaagtgaaacaaaatactggaaactgtcgctttattacgaaagtctcggcgagta
gi|5 : gtttatgaagagatttattataaactacaacttaggatattgtacagctgttgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAG----TTTATGAAGAGATTTATTATAAATTACAACATAGGATATTGTACGGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN--NNNNN--NNTTATT---TTTTTT--------ATATTTATAATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCATT-AAAAAT-AAAAAAATGTATACATTCTCGCTGAAATTAA---TAAACAAAATCTAGTTACTGTTTTATTTTTATAAAATTTCATAAAGTAAAACAATATTTAAAGTGAAACAAAA-TACCGGGAACTGTCGATATGTTACGAAAGTCCCGGCGAGTA
gi|6 : TATGAAGAGATTTATTATAAACTACAACTTAGGATACTGTACAGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN--NNNNN--NNTT-TT---TTTTTTTTGTATTTAT------AATTTACCTAAGCTGATCACGCTTAAGTTGCCATTTCATT-AAAATT-AAAAAAAGCTATACATTTTCGCAGAAATTAA---TAAACAAGTTCTATTTACTGCTTTATTTATATTAAATTTCATAAAGTAAAACAATATTTAAATTGAAACAAAA-TACCGGAAACTGTCGATATGTTACGGAAGTCTCGGCGAGTA
gi|7 : G----TTTATGAAGAGATTTATTATAAACTAAAACTTAGGATATTGTACGGCTGTTGACG
gi|7 : ATTT--ATTT-CA---ATATTT--------AT------AATTTACCTAAACTGATCACGCTTAAGTTGCCATA-AATT-AAAATT-AAAAAAATGTATACATTCTCGCTGAAATTAA---TAAACATGTTCTATTTACTGTTGTATTTATATTAAATTTCATaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttatttcaatatttataatttacctaaactgatcacgcttaagttgccataaattaaaattaaaaaaatgtatacattctcgctgaaattaataaacatgttctatttactgttgtatttatattaaatttcat
gi|8 : gtttatgaagagatttattataaactaaaacttaggatattgtacggctgttgacgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAACG-CCATGCATACGGATACATTTTAATTTTATATGTACATTATGTAGATATATCTCCA--GAAAACTAA--TTACGTGAAAA--TTTATGGAAATAAATATTCACTAGATGCAGGAATACTAGACTACTGGTATATTTACACAGCGATTTGTT
gi|9 : gattgatcatcccagattttatgacacaggctgcacgtggccttatatcttattatcaattattatcagttaataaggggttcaatgacaatgttttgaagtgacattaaacattcaatAAAA-TACCGGAGACTTTCGAAA-GT-ACGAAAGTATCGGCGAGTA
blockSeqs : G AT CCA T CT TTT T T C T T TATA NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A GG TT A TTC TTGTATTT ATTTAT A A A . T TT C A
blockSeqs : . T . A . T A . G A T . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . . GA . . . . T . T TA C .
blockSeqs : . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . . . . . . . A . T TA T .
blockSeqs : . . . . . . . . . . A . A TT C .
blockSeqs : . . . . . . . . A . A TT T .
blockSeqs : . . . . . . . . A . A . T .
blockSeqs : . . . . . . . . . . A . T .
blockSeqs : . A T .
blockSeqs : T .
blockSeqs : .
blockSeqCons : ***
originalCons : TTAACGGCCATGCATACCGATACATTTTAATGTCCTATGTGCATTATGTAAATATATCT--A--GNAAA--AATTTTAAGTGAANATTTTTATCGAAATNAATATTCACTAGATACGGGAATACAAAATTCCTAG----TTTATGAAGAGATTTATTATAAACTACAACTTAGGATATTGTACGGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGTTATC-TT--TATTT--ATTT-TT---ATATTT--------AT------AATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCATT-AAAAAT-AAAAAAATGTATACATTCTCGCTGAAATTAA---TAAACAAGTTCTATTTACTGTTTTATTTATNTTAAATTTCATAAAGTAAAACAATATTTAAAGCGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
finalCons : TTAACGGCCATGCATACCGATACATTTTAATGTCCTATGTGCATTATGTAAATATATCT--A--GNAAA--AATTTTAAGTGAANATTTTTATCGAAATNAATATTCACTAGATACGGGAATACAAAATTCCTAG----TTTATGAAGAGATTTATTATAAACTACAACTTAGGATATTGTACGGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGTTATC-TT--TATTT--ATTT-TT---ATATTT--------AT------AATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCATT-AAAAAT-AAAAAAATGTATACATTCTCGCTGAAATTAA---TAAACAAGTTCTATTTACTGTTTTATTTATNTTAAATTTCATAAAGTAAAACAATATTTAAAGCGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGGTATAACAAAACATTTTAGGATATTGGCACCAGTTGTGATTCCTTTTTACTAAAATTCCTT
Unaligned ( gi|12 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATTGGTATAACATAATAACGTCTTTGGATATTGGTACCAGTTGCGATTGCTTTTCTTTCTAATTTCTCG
Unaligned ( gi|14 ): AGGTTTAATGACCCCAGGGTTTATGACAGGATGTTATATCACATAGTATTATGCCTTATTACTAATTTAAACATTTTCAGTTAATTAGGGTTTCAATATCAATG
Unaligned ( gi|15 ): GCATAACATAACATTGGGTATCGGCGTCAGTTGCGATTCCGTCTCTCTATTCTTCCTGGTTTG
Unaligned ( gi|16 ): TAACATAACGTTTTTGGATATCGGCGCCAGTTGCGATTCCTTTTCTCTCTAATTCCTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 44444 11 111 1111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11 111 11111111 111111
lowQualScore : 6 44 44444 1 88 333 1 7 3 1 7 0000 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 8 11 66 5 555 88888888 444444 5 5 2 777 1 33 2 3
lowQualScore : . .. ..... . .. ... . . . . . .... .............................................................................................................. . .. .. . ... ........ ...... . . . ... . .. . .
lowQualScore : 7 77 00000 0 33 777 0 3 7 0 3 6666 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 00 99 0 666 11111111 444444 0 0 2 888 0 66 1 6
consensus : TTAACGGCCATGCATACCGATACATTTTAATGTCCTATGTGCATTATGTAAATATATCT--A--GNAAA--AATTTTAAGTGAANATTTTTATCGAAATNAATATTCACTAGATACGGGAATACAAAATTCCTAG----TTTATGAAGAGATTTATTATAAACTACAACTTAGGATATTGTACGGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGTTATC-TT--TATTT--ATTT-TT---ATATTT--------AT------AATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCATT-AAAAAT-AAAAAAATGTATACATTCTCGCTGAAATTAA---TAAACAAGTTCTATTTACTGTTTTATTTATNTTAAATTTCATAAAGTAAAACAATATTTAAAGCGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
Reference ( family-649 ) : TTAACGGCCATGCATACCGATACATTTTAATGTCCTATGTGCATTATGTAAATATATCT--A--GNAAA--AATTTTAAGTGAANATTTTTATCGAAATNAATATTCACTAGATACGGGAATACAAAATTCCTAG----TTTATGAAGAGATTTATTATAAACTACAACTTAGGATATTGTACGGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGTTATC-TT--TATTT--ATTT-TT---ATATTT--------AT------AATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCATT-AAAAAT-AAAAAAATGTATACATTCTCGCTGAAATTAA---TAAACAAGTTCTATTTACTGTTTTATTTATNTTAAATTTCATAAAGTAAAACAATATTTAAAGCGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
gi|1 : TTAACGGCCA-GCATACCGATACATTTTAATGTCCTATGTGCATTGTGTAAATATATCT--AAAGCAAA--AATT--AAGTGAACCTTTTTATCAAAATCAATATTCACTAGATACGGGAATACAAAGT-CCTAG----TTTATGAAGAGATTTATTATAAACTACAACTTG------TGTACGGCTATTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGTTATC-TT--TATTT--ATTT-TT---ATATCT--------AT------AATTTACCTTATCTGATCACGCTTAAGTTGCCATTTCATT-TAAAAT-AAAAAAGTGTATACATTCTCGCTGAAATAAAAAATAAACAAGTTCTATATACTGTTTTATTTATTTTAAATTTTATAAATTAAAACAATATTTAAAAAGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
gi|10 : ATTT--ATTT-TT---ATATTT--------AT------AATTTACCTTAACTGATTACACTTAAGTTGCTATTTCATT-AAAAAT-AAAAAAATGTATACATTTTCGGTGAAATTAA---TAGACAAGTTCTATTTACTGTTTTATTTATTTTAAATTTCATAAAGTAAAACAATATTTAAAGCGAAACAAAA-CACCGGAAACTGTCGATATGTAACGAAAGTCTCGGCGAGTA
gi|13 : ---TAAACAAGTTATATTTACTGTATTATTCATTTAAAATTTCATAAAGTAAAACAATA----AAGCGAAACAAAA-TACCGGAAACTGTCGATATGTTATGAAAGTCTCGGCGAGTA
gi|17 : AAAGTAAAACAAAAATACCGGAGGCTGCCGATATGTTACAAAAGAATCGGCCAGT
gi|18 : ----TTTATGAAGAGATTTGTTATAAACTACAACTCAGGATATTGTACGGCTGTTGAC
gi|19 : AAAGCGAAATAAAA-TACCGGAAACTGTCGATATGTTGCAAAAGTCTCGGCG
gi|2 : TTAACGGCC-TGCATACCGATACATTTTAATGTCCTTTGTGCATTATGTAAATATATCT------TAAA--AATTTTAAGTGAATATTTTTATCCAAATTAATATTCACTGGATACGAGAATACAAAATTCCTAG----TGTATGAAGAG------TATG------AACTTAGGATATTGTTCAGCTGTTGACG
gi|2 : -TT--TATTT--ATTT-TT---ATATTC--------AT------AATGTACCTTAGCTGATTACGCTTAAGTTGCCATTTCATT-AAAAAT-AAAAAATTATATACATTCTCGCTGAAATTAA---TAAACAAGTTCTATTTACTGTTTTATTTATTTTAAATTTCATTGAGT-------------AAGTGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGACAAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgtatttatttatttttatattcataatgtaccttagctgattacgcttaagttgccatttcattaaaaataaaaaattatatacattctcgctgaaattaataaacaagttctatttactgttttatttattttaaatttcattgagtaagtgaaacaaaataccggaaactgtcgatatgttacgaaagtctcgacaagta
gi|3 : ttaacggcctgcataccgatacattttaatgtcctttgtgcattatgtaaatatatcttaaaaattttaagtgaatatttttatccaaattaatattcactggatacgagaatacaaaattcctagtgtatgaagagtatgaacttaggatattgttcagctgttgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatgtaAG----TTTATGAAGAGATTTATTTTAAACTACAACAAAGGATATTTAACGGCAGTTGACG-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATTGGTATCTTTATTT-TTTTCATATTT--------AT------AATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCCTTAAAAAATAAAAAAAATGTATTCACTCTGGCTGAAATTAA---TTAACAAGTTCTATTTACTGTTTTATTTATATCAAATTTCATAAAGTAAAACAATATATAAAGTGAAACAAAA-TACCGGAAACTGTCGATATGTTACGAAAGTCTCGGCGAGTA
gi|4 : G----TTTATGAAGAGATTTATTATAAACTACAACTTAGGATATTGTACAGCTGTTGACG
gi|4 : TTT---TTT-TTGA-ATATTT--------AT------AATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCATT-ACAAAT-AAATAA-TGTATACATTCTAGCTGAAATTAA---TAAACAAGTTCTATTTACTGTTTTATTGATATTAAATTTCATAAAGTAAAACAATATATAAAGTGAAACAAAA-TACTGGAAACTGTCGCTTTATTACGAAAGTCTCGGCGAGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttttttgaatatttataatttaccttagctgatcacgcttaagttgccatttcattacaaataaataatgtatacattctagctgaaattaataaacaagttctatttactgttttattgatattaaatttcataaagtaaaacaatatataaagtgaaacaaaatactggaaactgtcgctttattacgaaagtctcggcgagta
gi|5 : gtttatgaagagatttattataaactacaacttaggatattgtacagctgttgacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAG----TTTATGAAGAGATTTATTATAAATTACAACATAGGATATTGTACGGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN--NNNNN--NNTTATT---TTTTTT--------ATATTTATAATTTACCTTAGCTGATCACGCTTAAGTTGCCATTTCATT-AAAAAT-AAAAAAATGTATACATTCTCGCTGAAATTAA---TAAACAAAATCTAGTTACTGTTTTATTTTTATAAAATTTCATAAAGTAAAACAATATTTAAAGTGAAACAAAA-TACCGGGAACTGTCGATATGTTACGAAAGTCCCGGCGAGTA
gi|6 : TATGAAGAGATTTATTATAAACTACAACTTAGGATACTGTACAGCTGTTGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN--NNNNN--NNTT-TT---TTTTTTTTGTATTTAT------AATTTACCTAAGCTGATCACGCTTAAGTTGCCATTTCATT-AAAATT-AAAAAAAGCTATACATTTTCGCAGAAATTAA---TAAACAAGTTCTATTTACTGCTTTATTTATATTAAATTTCATAAAGTAAAACAATATTTAAATTGAAACAAAA-TACCGGAAACTGTCGATATGTTACGGAAGTCTCGGCGAGTA
gi|7 : G----TTTATGAAGAGATTTATTATAAACTAAAACTTAGGATATTGTACGGCTGTTGACG
gi|7 : ATTT--ATTT-CA---ATATTT--------AT------AATTTACCTAAACTGATCACGCTTAAGTTGCCATA-AATT-AAAATT-AAAAAAATGTATACATTCTCGCTGAAATTAA---TAAACATGTTCTATTTACTGTTGTATTTATATTAAATTTCATaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatttatttcaatatttataatttacctaaactgatcacgcttaagttgccataaattaaaattaaaaaaatgtatacattctcgctgaaattaataaacatgttctatttactgttgtatttatattaaatttcat
gi|8 : gtttatgaagagatttattataaactaaaacttaggatattgtacggctgttgacgaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTAACG-CCATGCATACGGATACATTTTAATTTTATATGTACATTATGTAGATATATCTCCA--GAAAACTAA--TTACGTGAAAA--TTTATGGAAATAAATATTCACTAGATGCAGGAATACTAGACTACTGGTATATTTACACAGCGATTTGTT
gi|9 : gattgatcatcccagattttatgacacaggctgcacgtggccttatatcttattatcaattattatcagttaataaggggttcaatgacaatgttttgaagtgacattaaacattcaatAAAA-TACCGGAGACTTTCGAAA-GT-ACGAAAGTATCGGCGAGTA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTGGTATAACAAAACATTTTAGGATATTGGCACCAGTTGTGATTCCTTTTTACTAAAATTCCTT
Unaligned ( gi|12 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATTGGTATAACATAATAACGTCTTTGGATATTGGTACCAGTTGCGATTGCTTTTCTTTCTAATTTCTCG
Unaligned ( gi|14 ): AGGTTTAATGACCCCAGGGTTTATGACAGGATGTTATATCACATAGTATTATGCCTTATTACTAATTTAAACATTTTCAGTTAATTAGGGTTTCAATATCAATG
Unaligned ( gi|15 ): GCATAACATAACATTGGGTATCGGCGTCAGTTGCGATTCCGTCTCTCTATTCTTCCTGGTTTG
Unaligned ( gi|16 ): TAACATAACGTTTTTGGATATCGGCGCCAGTTGCGATTCCTTTTCTCTCTAATTCCTT