lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 5555555555 111111111 11111111111111111111111111111111111111111 111111111 88888888888 99999999999 1 222222 11111111 111
lowQualScore : 3 8 3333333333 4 666666666 4 44444444444444444444444444444444444444444 0 5555 222222222 0 55555555555 2 33 88888888888 3 1 4 44 0 111111 77 4 3 0 22222222 6 999 666
lowQualScore : . . .......... . ......... . ......................................... . .... ......... . ........... . .. ........... . . . .. . ...... .. . . . ........ . ... ...
lowQualScore : 0 0 8888888888 0 000000000 0 66666666666666666666666666666666666666666 8 7777 777777777 6 99999999999 5 44 22222222222 3 3 6 66 8 777777 11 6 2 4 11111111 0 111 444
consensus : AAGGG-CGGATCCAGCG----GGGGGGGGGGGGGGG-GGGGG---------GGGG-GGGGGT--C---------G-A--------------G----------GAATTTTCAAGATATAGA----CCTATAG--------TAAAATGTACTGTGAAAA-T----TTAAT-AAAA--CTAGATCTACATA---------AACTTACAAGCTGGGTGGAAAGATATAGAATCTAAATATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAACGATTCTCATTAACAAAGAATGTTANAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAAT
Reference ( gi|6 ) : AAAGG-CGGATCCAGCG---AGAGGGTGGGGGGGGG-GGGGG---------GGGG-GGGGGT--T---------GTA--------------G----------GAATTTTCAAGATATAGA----CCTATAA--------TAAAATGTACTGT------T----TTAAT-AAAA--CTAGATCTACATA--CCGGTA-AACTTACAAGCTGGTTGGAAAGATATAGAATCTAACTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAATGATTCTCATTAACAAAGCATGTTAAAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACGAATCA---T---CCATCCAAT
gi|8 : AAGGG-CGGATCCAGCG-----------GGGGGGGG-GGGGG---------GGGC-AGGGG------------------------------G----------GAATTTTCAAGATATAAA----CCTATAG--------TAAAATGTACTGTGAAAA-T----TTAAT-AAAA--CTAGATCTACATA---------AACTTACAAACTGGGTGGAAAGATATAGAGTCAAACTATTATTCATAAGGAGTATGAATT--ACGTGTAGATCAACAACGATTCTCATTAACAAAGAATGTTAAAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAAT
gi|4 : tgcAAGGG-ATGATTCAGCG----GAGTGTGTGTGTGTG-TGTGG---------GGGG-GGGGCT--C---------ATCCCCCT---------G----------GAATCTTTGAGATATAAA----CCTACAG--------TAAAATGTACTGTAAAAA-T----TTAAT-AAAA--CTAGATCTACATA--C-------ACTTACAAACTGGGTGGAAAGATATAGAGTCTTACTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAACGATTCTCATTAACAAAGAATGTTAAAAAGGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAAa
gi|7 : cAAAGGACGGATCCAGCG--------------------GGGGG---------TCAG-AGGGGT--C---------CTGACCCCCCCT-----G----------GAATTTTCAATATATATATATACCTATAG--------TAAACTGTACTGTGAAAA-T----TTAAT-CAAA--CTAGATTTACATA---------AACTTACAAGCTGGGTGACAAGATATAGAATCTAAATAGTATTTAATAGGAATAGGAATTTAATGCGTA------CAACAATTCTCAATAACAAAGCATGTTACAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCATCCT---CCATCCAATaa
gi|5 : AAGGG-CGAATACAGCGGGGAGAGGGGGGGGGGGAGCGGGGGCGTGCAAGCGGGGTGAGGGTACC---------GGACGCCCCCCTCCCATG----------GAGTTTTCAATATATAGA----CCTATAG--------TAAACTGTACTGTGAAAA-T----TTAAT-CAAA--CTAGATCTACA--------TA-AACTTACAATCTGGGTGACAAGA---------------------AATATGAA------TT--ATGTG------TACAACAATTCTCATTAACAAAGCATGTTACAAACGACAAATAATT--------GTATTAATGTCCGCGTACACAAATCA---TTCCCCATCCAATat
gi|13 : gcAAGGG-CGGATCCAGCG----------------------GGG---------GTGG-GAGGAC--T---------G---------------------------GAATTTTGAAGATATAGA----CCTATAA--------TAAACTGTACTGTGCAAAAT----TTAAT-CAAA--CTAGATCTACA--------TA-AACTTACAAGCTGGGTGACAAGATATAGAATCTAAATATTATTTAATAGGAATATAAATT--ATGTG------TACAAT-------------AAA------TAAAA--GACAAATAATT--------GTATTAATTGCCGCGTGCACAA
gi|1 : cCCAGTG---GGGGGGGGGGGGGGGG-GGGGG---------GGGG-GGGGG------------------------------G----------GAATCT-----GTTTAAA----CCGA-AA--------TAAAATATACTAA------TAA--TT-GT-AAAA--CTGGA
gi|16 : ataataatcaaagttccatttccaaacacttgtttcttacaattccataaaggaatgttaccttttgaaatattttcaatgaggttcctaatttggcgcactacaggtgttatatattacaatacttttcatgttcagatttaataaaacctagtctgatagttaaagCG---AGGGGG-GGGGGGGGG-GGGGG---------GGGG-GGGGGT--CAGGGGACCCGGACCCCCCT-------G----------GAATGTTCAAGCTATAAA----CCTATAG--------TAAAATGTACTAT------GAAAATTAATTAAAA--CTAGATCTACATA---------AACTTACAAACTTGTTGGAAAatttgatatatacttttgacaggagaaattaagataaaacaattgttgaaaatgagttgatt
gi|9 : GGGGGGGGGGGGG-GGGGG---------GGGG-GGGGGT--C----------CA--------------GACCCCCACTGGAATTTTCGAGATAAAGA----CCTATAG--------TAAACTGTGCTGTGAAAA-T----TTACT-CAAA--CTAGATCTACATA---------AACTTACAAGCTGGGTGACAAGATATAGAATCTAAATATTATTTAATAGAAATATAAAGT--ATGTG------TACACCAATTCTAATTAACAAAGCATGTTACAAACGACGCATAATT--------GTATAAATCTCCACGTACACAAATCA---T---CC-TCCA
gi|11 : aagggcGGGGGGG-GGGGG---------GGGG-GGGGGT--T--------------------------------------------CAAGATATAAA----CCTATAG--------TAAAATGTACTGAGAAAA-T----TTAAT-AAAA--CTAGATCTACATAAACT--TACAACTTACAAACTGGGTGGAAA---------TTTAACTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAACGATTCTCATTAACAAAGAATGTTAAAAACGATAAATAATT--------GTATTAATGTCCACGTGTACAAATCA---T---CCATCCAATtc
gi|17 : GGGGG-GGGGG---------GGGG-GGGG--------------GTA--------------G----------GCAT-----ACATGTACA----CGTATTAGGATTGTTTAAAATGCGAGATA-----T----TAAAA-AAAA--ATAGGACTACA--------CA-GACTTACAAa
gi|10 : --------------G----------GATTTTTCAAGATATAGA----CCTATAG--------TAAAATGTACTGTGAACA-T----TTTAT-AAAA--CTAGATCTACATA---------AACATACAAACTGGGTGGAAAGATATAAAATCTAACTATTATTTAAAAGGAATATGAATT--ACGTATAGATCTACAACGATTCTCATTAACAAAGAATGTTAAAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAATatgtataacaggtacttactagatggaattataac
gi|12 : gcagatccaggagccccacccccctt--------------G----------GAATTTTCAAGATATAGA----CCTATAG--------TAAACTGTACTGTGAAAG-T----TAAAT-CAAA--TTAGATCTACA--------TA-AACTTACAAGCTGGGTG---------ACAATATAAATATTATTTAATAGGAATATGA--T--A-GTGT------------------GTTAACAAAGCATGTTATAAACGACAAATAATT--------GTAGTAATGTACGTGTGCACAAATCATCCT---CCATCCAATa
gi|2 : aagggcggatccagcgttgtccggacccccccccccct----------GAATTTTCAAGATATAGA----CCTATAG--------AAAAATATACTGTGAAAA-T----TTAAA-AAAAAACTAAATCTACATA---------AACTTAAAAGCTGGGTGGAAGGATATAAAATCTAAATATTATTTAATAGGAATATGAATT--ACGTGTTGATCTACAACGATTCTCATTAACATAGAATGTTAAAAA-AACAGATCATTATTAATAAGTATTAATGCCCGCGTGCACAAATCA---T---CCATTCAATa
gi|3 : caagtgcagatccagttggggtcggtggcccccccccccccctcccaacaaacactccctctataATATAGA----CCTATAG--------TAAACT--ACTGTGGACA-T----TTAAT-CAAA--CTAGATCTACATA---------AACTTACAAGCTGGGTGACAAGATATAGAATCTAAATACTATTTAATAGGAATATGAATT--ATGTGTA------CAACAATTCTCATTAACAAAGCATGTTACAAACGACAAATAATT--------GTATTAATGTCTGCGTGCACAAATCATCCT---CCATCCAAT
gi|19 : agggcggatctagcggagaggagggggtcaggggtccggacccccccccccccacacacacacctggattatatatatATAAA----CCTATAG--------TAAAATGTACTGTGAACA-T----TTAAT-AAAA--CTAGATCTACATA---------AACTTACAAACTGGGTGGAAAGATATAa
gi|15 : TACTGTGAAAA-T----TTAAT-AAAA--CTAGATCTACATG---------AACTTACAAACTGGGTGGAAAGATATAG--TCTAACTATTATTTAATAGGAATATGAATT--ACGCGTAGATCTAGAACGATTCTC-TTAACAAAGAATGTTACAAAGGACAAATTATT--------GTATTAATGTCTGCGTGCACAAATCA---T---CCATCCAA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TCATATTCAATGATCCATCAAACCATATGTTGGCAACACAATTATAAAGTAATGCTCATATACCAAAGTATTGTTCCATTGCAGTCTAAGACTTTTCAGCTTTTATTATTACAATTTTAGTGATATACTATATATCATAATTTGTAGTTCGTGGAGGTGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|18 ): TTATTTTTGTTCAATTACCATTCTTGATTCATTCAACATTTTCAATTTCAAATATCTTGTAGGAGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGTTTTTTTTTTTTGAAA
Alignments
lowQualScore : 1111111111111111111111111111111111
lowQualScore : 111111111 0000000000000000000000000000000000 111111 11111111 111
lowQualScore : 0 44 666 444444444 4444444444444444444444444444444444 0 5555 2 5555 2 2 2 33 2 2 666666 8888888 0 3 44 999999 3 1 11111111 777 555
lowQualScore : . .. ... ......... .................................. . .... . .... . . . .. . . ...... ....... . . .. ...... . . ........ ... ...
lowQualScore : 1 66 444 555555555 6666666666666666666666666666666666 1 3333 5 0000 4 4 4 22 4 4 888888 1111111 6 2 22 444444 9 0 22222222 555 888
consensus : AAGGGCGGATCCAGCGGGGGGG-GGGGGGGGGGG---GGGGG---------GGGG---G--GGT--C----G-A-C-------------GGAATTTTCAAGATATAGA----CCTATAGTAAAA-TGT----ACTGTG-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTGGAAAGATATAGAATCTAANTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAACGATTCTCATTAACAAAGNATGTTANAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAAT
Reference ( family-6416 ) : AAGGGCGGATCCAGCGGGGGGG-GGGGGGGGGGG---GGGGG---------GGGG---G--GGT--C----G-A---------------GGAATTTTCAAGATATAGA----CCTATAGTAAAA-TGT----ACTGTG-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTGGAAAGATATAGAATCTAAATATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAACGATTCTCATTAACAAAGAATGTTANAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAAT
gi|1 : CCAGTGGGGGGG-GGGGGGGGGGG---GGGGG---------GGGG---G--G---------G-G---------------GGAATCT-----GTTTAAA----CCGA-AATAAAA-TAT----ACT----AATA-ATT--GTAAAA--CTGGAATTTGATATA------TACTT
gi|10 : ataataatcaaagttccatttccaaacacttgtttcttacaattccataaaggaatgttaccttttgaaatattttcaatgaggttcctaatttggcgcactacaggtgttatatattacaatacttttcatgttcagatttaataaaacctagtctgatagttaaag---------------GGATTTTTCAAGATATAGA----CCTATAGTAAAA-TGT----ACTGTG-AA-C-ATTTTATAAAA--CTAG-ATCT-ACATA------AACATACAA-------ACTGGGTGGAAAGATATAAAATCTAACTATTATTTAAAAGGAATATGAATT--ACGTATAGATCTACAACGATTCTCATTAACAAAGAATGTTAAAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAATttgacaggagaaattaagataaaacaattgttgaaaatgagttgatt
gi|11 : gcagatccaggagccccaccccccttGGGGGGGGG---GGGGG---------GGGG---G--GGT--------------------------------TCAAGATATAAA----CCTATAGTAAAA-TGT----ACTGAG-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATA------AACTTACAACTTACAAACTGGGTGGAAA---------TTTAACTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAACGATTCTCATTAACAAAGAATGTTAAAAACGATAAATAATT--------GTATTAATGTCCACGTGTACAAATCA---T---CCATCCAATa
gi|12 : ---------------GGAATTTTCAAGATATAGA----CCTATAGTAAAC-TGT----ACTGTG-AA-A-GTTAAATCAAA--TTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTG---------ACAATATAAATATTATTTAATAGGAATATGA--T--A-GTGT------------------GTTAACAAAGCATGTTATAAACGACAAATAATT--------GTAGTAATGTACGTGTGCACAAATCATCCT---CCATCCAATa
gi|13 : aagggcggatccagcgttgtccggacccccccccccctAAGGGCGGATCCAGCGGGGGTG-GGAGGA-------------------------------------C----T-----------------GGAATTTTGAAGATATAGA----CCTATAATAAAC-TGT----ACTGTGCAA-A-ATTTAATCAAA--CTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTGACAAGATATAGAATCTAAATATTATTTAATAGGAATATAAATT--ATGTG------TACAA----------TAA-----------ATAAAAGACAAATAATT--------GTATTAATTGCCGCGTGCACAAa
gi|15 : cT----ACTGTG-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATG------AACTTACAA-------ACTGGGTGGAAAGATATAG--TCTAACTATTATTTAATAGGAATATGAATT--ACGCGTAGATCTAGAACGATTCTC-TTAACAAAGAATGTTACAAAGGACAAATTATT--------GTATTAATGTCTGCGTGCACAAATCA---T---CCATCCAA
gi|16 : CGAGGGGG-GGGGGGGGGGG---GGGGG---------GGGG---G--GGT--CAGGGG-ACCCGGACCCCCCT--GGAATGTTCAAGCTATAAA----CCTATAGTAAAA-TGT----ACTATG-AA-A-ATTAATTAAAA--CTAG-ATCT-ACATA------AACTTACAA-------ACTTGTTGGAAA
gi|17 : GGGGGGG---GGGGG---------GGGG---G--GGT---------A---------------GGCAT-----ACATGTACA----CGTAT--TAGGATTGTTTAAAATGCG-AG-ATATTAAAAAAAA--ATAG-GACT-ACACA------GACTTACAA-------
gi|19 : ATAAA----CCTATAGTAAAA-TGT----ACTGTG-AA-C-ATTTAATAAAA--CTAG-ATCT-ACATA------AACTTACAA-------ACTGGGTGGAAAGATATAatgtataacaggtacttactagatggaattataac
gi|2 : GAATTTTCAAGATATAGA----CCTATAGAAAAA-TAT----ACTGTG-AA-A-ATTTAAAAAAAAACTAA-ATCT-ACATA------AACTTAAAA-------GCTGGGTGGAAGGATATAAAATCTAAATATTATTTAATAGGAATATGAATT--ACGTGTTGATCTACAACGATTCTCATTAACATAGAATGTTAAAAA-AACAGATCATTATTAATAAGTATTAATGCCCGCGTGCACAAATCA---T---CCATTCAAT
gi|3 : caagtgcagatccagttggggtcggtggcccccccccccccctcccaacaaacactccctctataATATAGA----CCTATAGTAAAC-T------ACTGTG-GA-C-ATTTAATCAAA--CTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTGACAAGATATAGAATCTAAATACTATTTAATAGGAATATGAATT--ATGTG------TACAACAATTCTCATTAACAAAGCATGTTACAAACGACAAATAATT--------GTATTAATGTCTGCGTGCACAAATCATCCT---CCATCCAAT
gi|4 : agggcggatctagcggagaggagggggtcaggggtccggacccccccccccccacacacacacctggattatatatatAAGGGATGATTCAGCGGAGTGT-GTGTGTGTGTG---TGGGG---------GGGG---G--GCT--C------ATCCCCCT--------GGAATCTTTGAGATATAAA----CCTACAGTAAAA-TGT----ACTGTA-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATA------CACTTACAA-------ACTGGGTGGAAAGATATAGAGTCTTACTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAACGATTCTCATTAACAAAGAATGTTAAAAAGGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAAa
gi|5 : cAAGGGCGAATACAGCGGGGAGA-GGGGGGGGGGGAGCGGGGGCGTGCAAGCGGGGTGAG--GGTACC----G-GACGCCCCCCTCCCATGGAGTTTTCAATATATAGA----CCTATAGTAAAC-TGT----ACTGTG-AA-A-ATTTAATCAAA--CTAG-ATCT-ACAT--------------AA-------ACT-------------TACAATCTGGGTGACA------AGAAATATGAATT--ATGTGTA------CAACAATTCTCATTAACAAAGCATGTTACAAACGACAAATAATT--------GTATTAATGTCCGCGTACACAAATCA---TTCCCCATCCAATaa
gi|6 : gcAAAGGCGGATCCAGCGAGAGGGTGGGGGGGGGGG---GGGGG---------GGGG---G--GGT--T----GTA---------------GGAATTTTCAAGATATAGA----CCTATAATAAAA-TGT----ACTGT--------TTTAATAAAA--CTAG-ATCT-ACATACCGGTAAACTTACAA-------GCTGGTTGGAAAGATATAGAATCTAACTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAATGATTCTCATTAACAAAGCATGTTAAAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACGAATCA---T---CCATCCAAT
gi|7 : AAGGACGGATCCAGCGGGGGGT-CAGAGGGG--------------------------------T--CCT--G-ACCCCCCCT-------GGAATTTTCAATATATATATATACCTATAGTAAAC-TGT----ACTGTG-AA-A-ATTTAATCAAA--CTAG-ATTT-ACATA------AACTTACAA-------GCTGGGTGACAAGATATAGAATCTAAATAGTATTTAATAGGAATAGGAATTTAATGCG------TACAACAATTCTCAATAACAAAGCATGTTACAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCATCCT---CCATCCAAT
gi|8 : aAAGGGCGGATCCAGCGGGG------------GGG---GGGGG---------GGGG---GCAGG--------G-G---------------GGAATTTTCAAGATATAAA----CCTATAGTAAAA-TGT----ACTGTG-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATA------AACTTACAA-------ACTGGGTGGAAAGATATAGAGTCAAACTATTATTCATAAGGAGTATGAATT--ACGTGTAGATCAACAACGATTCTCATTAACAAAGAATGTTAAAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAATat
gi|9 : tgcAAGGGCGG--------GGGGGG-GG----GGGGG---GGGGG---------GGGG---G--GGT--CCA--G-ACCCCCACT-------GGAATTTTCGAGATAAAGA----CCTATAGTAAAC-TGT----GCTGTG-AA-A-ATTTACTCAAA--CTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTGACAAGATATAGAATCTAAATATTATTTAATAGAAATATAAAGT--ATGTG------TACACCAATTCTAATTAACAAAGCATGTTACAAACGACGCATAATT--------GTATAAATCTCCACGTACACAAATCA---T---CC-TCCAa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TCATATTCAATGATCCATCAAACCATATGTTGGCAACACAATTATAAAGTAATGCTCATATACCAAAGTATTGTTCCATTGCAGTCTAAGACTTTTCAGCTTTTATTATTACAATTTTAGTGATATACTATATATCATAATTTGTAGTTCGTGGAGGTGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|18 ): TTATTTTTGTTCAATTACCATTCTTGATTCATTCAACATTTTCAATTTCAAATATCTTGTAGGAGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGTTTTTTTTTTTTGAAA
Alignments
lowQualScore : 111111111 999999999999999999999999999999999999 111111 11111111 111
lowQualScore : 0 4 666 444444444 666 222222222222222222222222222222222222 0 5555 2 5555 2 2 2 33 2 2 666666 8888888 0 1 44 999999 2 1 11111111 777 555
lowQualScore : . . ... ......... ... .................................... . .... . .... . . . .. . . ...... ....... . . .. ...... . . ........ ... ...
lowQualScore : 1 4 444 555555555 444 888888888888888888888888888888888888 1 3333 5 0000 4 4 4 22 4 4 888888 1111111 6 0 22 444444 1 0 22222222 555 888
consensus : AAGGGCGGATCCAGCGGGGGGG-GGGGGGGGGGG---GGGGG---------GGGG---GGGT------C----G----------AC------------GGAATTTTCAAGATATAGA----CCTATAGTAAAA-TGT----ACTGTG-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTGGAAAGATATAGAATCTAANTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAACGATTCTCATTAACAAAGNATGTTANAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAAT
Reference ( family-6416 ) : AAGGGCGGATCCAGCGGGGGGG-GGGGGGGGGGG---GGGGG---------GGGG---GGGT------C----G----------AC------------GGAATTTTCAAGATATAGA----CCTATAGTAAAA-TGT----ACTGTG-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTGGAAAGATATAGAATCTAANTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAACGATTCTCATTAACAAAGNATGTTANAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAAT
gi|1 : CCAGTGGGGGGG-GGGGGGGGGGG---GGGGG---------GGGG---GGG------------G------------------------GGAATCT-----GTTTAAA----CCGA-AATAAAA-TAT----ACT----AATA-ATT--GTAAAA--CTGGAATTTGATATA------TACTT
gi|10 : ataataatcaaagttccatttccaaacacttgtttcttacaattccataaaggaatgttaccttttgaaatattttcaatgaggttcctaatttggcgcactacaggtgttatatattacaatacttttcatgttcagatttaataaaacctagtctgatagttaaag------------GGATTTTTCAAGATATAGA----CCTATAGTAAAA-TGT----ACTGTG-AA-C-ATTTTATAAAA--CTAG-ATCT-ACATA------AACATACAA-------ACTGGGTGGAAAGATATAAAATCTAACTATTATTTAAAAGGAATATGAATT--ACGTATAGATCTACAACGATTCTCATTAACAAAGAATGTTAAAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAATttgacaggagaaattaagataaaacaattgttgaaaatgagttgatt
gi|11 : gcagatccaggagccccaccccccttGGGGGGGGG---GGGGG---------GGGG---GGGT-------------------------------------------TCAAGATATAAA----CCTATAGTAAAA-TGT----ACTGAG-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATA------AACTTACAACTTACAAACTGGGTGGAAA---------TTTAACTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAACGATTCTCATTAACAAAGAATGTTAAAAACGATAAATAATT--------GTATTAATGTCCACGTGTACAAATCA---T---CCATCCAATa
gi|12 : ------------GGAATTTTCAAGATATAGA----CCTATAGTAAAC-TGT----ACTGTG-AA-A-GTTAAATCAAA--TTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTG---------ACAATATAAATATTATTTAATAGGAATATGA--T--A-GTGT------------------GTTAACAAAGCATGTTATAAACGACAAATAATT--------GTAGTAATGTACGTGTGCACAAATCATCCT---CCATCCAATa
gi|13 : aagggcggatccagcgttgtccggacccccccccccctAAGGGCGGATCCAGCGGGGGTG-GGAGG--------------------------------------------------------ACT-----------GGAATTTTGAAGATATAGA----CCTATAATAAAC-TGT----ACTGTGCAA-A-ATTTAATCAAA--CTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTGACAAGATATAGAATCTAAATATTATTTAATAGGAATATAAATT--ATGTG------TACAA----------TAA-----------ATAAAAGACAAATAATT--------GTATTAATTGCCGCGTGCACAAa
gi|15 : cT----ACTGTG-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATG------AACTTACAA-------ACTGGGTGGAAAGATATAG--TCTAACTATTATTTAATAGGAATATGAATT--ACGCGTAGATCTAGAACGATTCTC-TTAACAAAGAATGTTACAAAGGACAAATTATT--------GTATTAATGTCTGCGTGCACAAATCA---T---CCATCCAA
gi|16 : CGAGGGGG-GGGGGGGGGGG---GGGGG---------GGGG---GGGT------CAGGGG----------ACCCGGACCCCCCTGGAATGTTCAAGCTATAAA----CCTATAGTAAAA-TGT----ACTATG-AA-A-ATTAATTAAAA--CTAG-ATCT-ACATA------AACTTACAA-------ACTTGTTGGAAA
gi|17 : GGGGGGG---GGGGG---------GGGG---GGGT------A----G----------GC---------------AT-----ACATGTACA----CGTAT--TAGGATTGTTTAAAATGCG-AG-ATATTAAAAAAAA--ATAG-GACT-ACACA------GACTTACAA-------
gi|19 : ATAAA----CCTATAGTAAAA-TGT----ACTGTG-AA-C-ATTTAATAAAA--CTAG-ATCT-ACATA------AACTTACAA-------ACTGGGTGGAAAGATATAatgtataacaggtacttactagatggaattataac
gi|2 : T------C----T----------AT------------AGAATTTTCAAGATATAGA----CCTATAGAAAAA-TAT----ACTGTG-AA-A-ATTTAAAAAAAAACTAA-ATCT-ACATA------AACTTAAAA-------GCTGGGTGGAAGGATATAAAATCTAAATATTATTTAATAGGAATATGAATT--ACGTGTTGATCTACAACGATTCTCATTAACATAGAATGTTAAAAA-AACAGATCATTATTAATAAGTATTAATGCCCGCGTGCACAAATCA---T---CCATTCAAT
gi|3 : caagtgcagatccagttggggtcggtggcccccccccccccctcccaacaaacactcccATATAGA----CCTATAGTAAAC-T------ACTGTG-GA-C-ATTTAATCAAA--CTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTGACAAGATATAGAATCTAAATACTATTTAATAGGAATATGAATT--ATGTG------TACAACAATTCTCATTAACAAAGCATGTTACAAACGACAAATAATT--------GTATTAATGTCTGCGTGCACAAATCATCCT---CCATCCAAT
gi|4 : agggcggatctagcggagaggagggggtcaggggtccggacccccccccccccacacacacacctggattatatatatAAGGGATGATTCAGCGGAGTGT-GTGTGTGTGTG---TGGGG---------GGGG---GGCT------C----A----------TCCCCCT-------GGAATCTTTGAGATATAAA----CCTACAGTAAAA-TGT----ACTGTA-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATA------CACTTACAA-------ACTGGGTGGAAAGATATAGAGTCTTACTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAACGATTCTCATTAACAAAGAATGTTAAAAAGGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAAa
gi|5 : cAAGGGCGAATACAGCGGGGAGA-GGGGGGGGGGGAGCGGGGGCGTGCAAGCGGGGTGAGGGTACCGGAC----GCCCCCCTCCCAT------------GGAGTTTTCAATATATAGA----CCTATAGTAAAC-TGT----ACTGTG-AA-A-ATTTAATCAAA--CTAG-ATCT-ACATA------AACT----------------------------TACAATCTGGGTGACA------AGAAATATGAATT--ATGTGTA------CAACAATTCTCATTAACAAAGCATGTTACAAACGACAAATAATT--------GTATTAATGTCCGCGTACACAAATCA---TTCCCCATCCAATaa
gi|6 : gcAAAGGCGGATCCAGCGAGAGGGTGGGGGGGGGGG---GGGGG---------GGGG---GGGT------T----G----------TA------------GGAATTTTCAAGATATAGA----CCTATAATAAAA-TGT----ACTGT--------TTTAATAAAA--CTAG-ATCT-ACATACCGGTAAACTTACAA-------GCTGGTTGGAAAGATATAGAATCTAACTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAATGATTCTCATTAACAAAGCATGTTAAAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACGAATCA---T---CCATCCAAT
gi|7 : AAGGACGGATCCAGCGGGGGGT-CAGAGGGG------------------------------T------CCT--G----------ACCCCCCCT-----GGAATTTTCAATATATATATATACCTATAGTAAAC-TGT----ACTGTG-AA-A-ATTTAATCAAA--CTAG-ATTT-ACATA------AACTTACAA-------GCTGGGTGACAAGATATAGAATCTAAATAGTATTTAATAGGAATAGGAATTTAATGCG------TACAACAATTCTCAATAACAAAGCATGTTACAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCATCCT---CCATCCAAT
gi|8 : aAAGGGCGGATCCAGCGGGG-GG-GGGGGGGGGGG---CAGGG---------G----------------------------------------------GGAATTTTCAAGATATAAA----CCTATAGTAAAA-TGT----ACTGTG-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATA------AACTTACAA-------ACTGGGTGGAAAGATATAGAGTCAAACTATTATTCATAAGGAGTATGAATT--ACGTGTAGATCAACAACGATTCTCATTAACAAAGAATGTTAAAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAATat
gi|9 : tgcGCGGGGGGG-GG---GGGGGG---GGGGG---------GGGG---GGGT------CCA--G----------ACCCCCACT-----GGAATTTTCGAGATAAAGA----CCTATAGTAAAC-TGT----GCTGTG-AA-A-ATTTACTCAAA--CTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTGACAAGATATAGAATCTAAATATTATTTAATAGAAATATAAAGT--ATGTG------TACACCAATTCTAATTAACAAAGCATGTTACAAACGACGCATAATT--------GTATAAATCTCCACGTACACAAATCA---T---CC-TCCAa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TCATATTCAATGATCCATCAAACCATATGTTGGCAACACAATTATAAAGTAATGCTCATATACCAAAGTATTGTTCCATTGCAGTCTAAGACTTTTCAGCTTTTATTATTACAATTTTAGTGATATACTATATATCATAATTTGTAGTTCGTGGAGGTGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|18 ): TTATTTTTGTTCAATTACCATTCTTGATTCATTCAACATTTTCAATTTCAAATATCTTGTAGGAGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGTTTTTTTTTTTTGAAA
Alignments
lowQualScore : 111111111 999999999999999999999999999999999999 111111 11111111 111
lowQualScore : 0 4 666 444444444 666 222222222222222222222222222222222222 0 5555 2 5555 2 2 2 33 2 2 666666 8888888 0 1 44 999999 2 1 11111111 777 555
lowQualScore : . . ... ......... ... .................................... . .... . .... . . . .. . . ...... ....... . . .. ...... . . ........ ... ...
lowQualScore : 1 4 444 555555555 444 888888888888888888888888888888888888 1 3333 5 0000 4 4 4 22 4 4 888888 1111111 6 0 22 444444 1 0 22222222 555 888
consensus : AAGGGCGGATCCAGCGGGGGGG-GGGGGGGGGGG---GGGGG---------GGGG---GGGT------C----G----------AC------------GGAATTTTCAAGATATAGA----CCTATAGTAAAA-TGT----ACTGTG-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTGGAAAGATATAGAATCTAANTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAACGATTCTCATTAACAAAGNATGTTANAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAAT
Reference ( family-6416 ) : AAGGGCGGATCCAGCGGGGGGG-GGGGGGGGGGG---GGGGG---------GGGG---GGGT------C----G----------AC------------GGAATTTTCAAGATATAGA----CCTATAGTAAAA-TGT----ACTGTG-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTGGAAAGATATAGAATCTAANTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAACGATTCTCATTAACAAAGNATGTTANAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAAT
gi|1 : CCAGTGGGGGGG-GGGGGGGGGGG---GGGGG---------GGGG---GGG------------G------------------------GGAATCT-----GTTTAAA----CCGA-AATAAAA-TAT----ACT----AATA-ATT--GTAAAA--CTGGAATTTGATATA------TACTT
gi|10 : ataataatcaaagttccatttccaaacacttgtttcttacaattccataaaggaatgttaccttttgaaatattttcaatgaggttcctaatttggcgcactacaggtgttatatattacaatacttttcatgttcagatttaataaaacctagtctgatagttaaag------------GGATTTTTCAAGATATAGA----CCTATAGTAAAA-TGT----ACTGTG-AA-C-ATTTTATAAAA--CTAG-ATCT-ACATA------AACATACAA-------ACTGGGTGGAAAGATATAAAATCTAACTATTATTTAAAAGGAATATGAATT--ACGTATAGATCTACAACGATTCTCATTAACAAAGAATGTTAAAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAATttgacaggagaaattaagataaaacaattgttgaaaatgagttgatt
gi|11 : gcagatccaggagccccaccccccttGGGGGGGGG---GGGGG---------GGGG---GGGT-------------------------------------------TCAAGATATAAA----CCTATAGTAAAA-TGT----ACTGAG-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATA------AACTTACAACTTACAAACTGGGTGGAAA---------TTTAACTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAACGATTCTCATTAACAAAGAATGTTAAAAACGATAAATAATT--------GTATTAATGTCCACGTGTACAAATCA---T---CCATCCAATa
gi|12 : ------------GGAATTTTCAAGATATAGA----CCTATAGTAAAC-TGT----ACTGTG-AA-A-GTTAAATCAAA--TTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTG---------ACAATATAAATATTATTTAATAGGAATATGA--T--A-GTGT------------------GTTAACAAAGCATGTTATAAACGACAAATAATT--------GTAGTAATGTACGTGTGCACAAATCATCCT---CCATCCAATa
gi|13 : aagggcggatccagcgttgtccggacccccccccccctAAGGGCGGATCCAGCGGGGGTG-GGAGG--------------------------------------------------------ACT-----------GGAATTTTGAAGATATAGA----CCTATAATAAAC-TGT----ACTGTGCAA-A-ATTTAATCAAA--CTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTGACAAGATATAGAATCTAAATATTATTTAATAGGAATATAAATT--ATGTG------TACAA----------TAA-----------ATAAAAGACAAATAATT--------GTATTAATTGCCGCGTGCACAAa
gi|15 : cT----ACTGTG-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATG------AACTTACAA-------ACTGGGTGGAAAGATATAG--TCTAACTATTATTTAATAGGAATATGAATT--ACGCGTAGATCTAGAACGATTCTC-TTAACAAAGAATGTTACAAAGGACAAATTATT--------GTATTAATGTCTGCGTGCACAAATCA---T---CCATCCAA
gi|16 : CGAGGGGG-GGGGGGGGGGG---GGGGG---------GGGG---GGGT------CAGGGG----------ACCCGGACCCCCCTGGAATGTTCAAGCTATAAA----CCTATAGTAAAA-TGT----ACTATG-AA-A-ATTAATTAAAA--CTAG-ATCT-ACATA------AACTTACAA-------ACTTGTTGGAAA
gi|17 : GGGGGGG---GGGGG---------GGGG---GGGT------A----G----------GC---------------AT-----ACATGTACA----CGTAT--TAGGATTGTTTAAAATGCG-AG-ATATTAAAAAAAA--ATAG-GACT-ACACA------GACTTACAA-------
gi|19 : ATAAA----CCTATAGTAAAA-TGT----ACTGTG-AA-C-ATTTAATAAAA--CTAG-ATCT-ACATA------AACTTACAA-------ACTGGGTGGAAAGATATAatgtataacaggtacttactagatggaattataac
gi|2 : T------C----T----------AT------------AGAATTTTCAAGATATAGA----CCTATAGAAAAA-TAT----ACTGTG-AA-A-ATTTAAAAAAAAACTAA-ATCT-ACATA------AACTTAAAA-------GCTGGGTGGAAGGATATAAAATCTAAATATTATTTAATAGGAATATGAATT--ACGTGTTGATCTACAACGATTCTCATTAACATAGAATGTTAAAAA-AACAGATCATTATTAATAAGTATTAATGCCCGCGTGCACAAATCA---T---CCATTCAAT
gi|3 : caagtgcagatccagttggggtcggtggcccccccccccccctcccaacaaacactcccATATAGA----CCTATAGTAAAC-T------ACTGTG-GA-C-ATTTAATCAAA--CTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTGACAAGATATAGAATCTAAATACTATTTAATAGGAATATGAATT--ATGTG------TACAACAATTCTCATTAACAAAGCATGTTACAAACGACAAATAATT--------GTATTAATGTCTGCGTGCACAAATCATCCT---CCATCCAAT
gi|4 : agggcggatctagcggagaggagggggtcaggggtccggacccccccccccccacacacacacctggattatatatatAAGGGATGATTCAGCGGAGTGT-GTGTGTGTGTG---TGGGG---------GGGG---GGCT------C----A----------TCCCCCT-------GGAATCTTTGAGATATAAA----CCTACAGTAAAA-TGT----ACTGTA-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATA------CACTTACAA-------ACTGGGTGGAAAGATATAGAGTCTTACTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAACGATTCTCATTAACAAAGAATGTTAAAAAGGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAAa
gi|5 : cAAGGGCGAATACAGCGGGGAGA-GGGGGGGGGGGAGCGGGGGCGTGCAAGCGGGGTGAGGGTACCGGAC----GCCCCCCTCCCAT------------GGAGTTTTCAATATATAGA----CCTATAGTAAAC-TGT----ACTGTG-AA-A-ATTTAATCAAA--CTAG-ATCT-ACATA------AACT----------------------------TACAATCTGGGTGACA------AGAAATATGAATT--ATGTGTA------CAACAATTCTCATTAACAAAGCATGTTACAAACGACAAATAATT--------GTATTAATGTCCGCGTACACAAATCA---TTCCCCATCCAATaa
gi|6 : gcAAAGGCGGATCCAGCGAGAGGGTGGGGGGGGGGG---GGGGG---------GGGG---GGGT------T----G----------TA------------GGAATTTTCAAGATATAGA----CCTATAATAAAA-TGT----ACTGT--------TTTAATAAAA--CTAG-ATCT-ACATACCGGTAAACTTACAA-------GCTGGTTGGAAAGATATAGAATCTAACTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAATGATTCTCATTAACAAAGCATGTTAAAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACGAATCA---T---CCATCCAAT
gi|7 : AAGGACGGATCCAGCGGGGGGT-CAGAGGGG------------------------------T------CCT--G----------ACCCCCCCT-----GGAATTTTCAATATATATATATACCTATAGTAAAC-TGT----ACTGTG-AA-A-ATTTAATCAAA--CTAG-ATTT-ACATA------AACTTACAA-------GCTGGGTGACAAGATATAGAATCTAAATAGTATTTAATAGGAATAGGAATTTAATGCG------TACAACAATTCTCAATAACAAAGCATGTTACAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCATCCT---CCATCCAAT
gi|8 : aAAGGGCGGATCCAGCGGGG-GG-GGGGGGGGGGG---CAGGG---------G----------------------------------------------GGAATTTTCAAGATATAAA----CCTATAGTAAAA-TGT----ACTGTG-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATA------AACTTACAA-------ACTGGGTGGAAAGATATAGAGTCAAACTATTATTCATAAGGAGTATGAATT--ACGTGTAGATCAACAACGATTCTCATTAACAAAGAATGTTAAAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAATat
gi|9 : tgcGCGGGGGGG-GG---GGGGGG---GGGGG---------GGGG---GGGT------CCA--G----------ACCCCCACT-----GGAATTTTCGAGATAAAGA----CCTATAGTAAAC-TGT----GCTGTG-AA-A-ATTTACTCAAA--CTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTGACAAGATATAGAATCTAAATATTATTTAATAGAAATATAAAGT--ATGTG------TACACCAATTCTAATTAACAAAGCATGTTACAAACGACGCATAATT--------GTATAAATCTCCACGTACACAAATCA---T---CC-TCCAa
blockSeqs : T AGC CGTGCAAGC TGA CAGGGGACCCGGACCCCCCT TATA T TTAA C . T AA . . CCGGTA CTTACAA C TA TAGATC A A ATTAATAA TCC TCC
blockSeqs : . . . . ACCGGACGCCCCCCTCCCAT . . . . . . . . . . . A . TAGATC C T . TCC .
blockSeqs : . . . . CCTGACCCCCCCT . . . . . . . . . . . A . TTGATC A T . TCC .
blockSeqs : . . . . CCAGACCCCCACT . . . . . . . . . . . C . TAGATC A C . . .
blockSeqs : . . . . CATCCCCCT . . . . . . . . . . . A . TAGATC C A . . .
blockSeqs : . . . . AGGC . . . . . . . . . . . A . TAGATC A C . . .
blockSeqs : . . . . CTAT . . . . . . . . . . . C . TA C A . . .
blockSeqs : . . . . TGTA . . . . . . . . . . . G . T C C . . .
blockSeqs : . . . ACT . . . . . . . . . . . C . . C A . . .
blockSeqs : . . . . . . . . . . . . . . . A . . A C . . .
blockSeqs : . . . . . . . . . . . . C . . C A . . .
blockSeqs : . . . . . . . . . . . A . . . C .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : CGACCCCCCT**************************
originalCons : AAGGGCGGATCCAGCGGGGGGG-GGGGGGGGGGG---GGGGG---------GGGG---GGGT------C----G----------AC------------GGAATTTTCAAGATATAGA----CCTATAGTAAAA-TGT----ACTGTG-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTGGAAAGATATAGAATCTAANTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAACGATTCTCATTAACAAAGNATGTTANAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAAT
finalCons : AAGGGCGGATCCAGCGGGGGGG-GGGGGGGGGGG---GGGGG---------GGGG---GGGTCGACCCCCCT--------------------------GGAATTTTCAAGATATAGA----CCTATAGTAAAA-TGT----ACTGTG-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTGGAAAGATATAGAATCTAANTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAACGATTCTCATTAACAAAGNATGTTANAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TCATATTCAATGATCCATCAAACCATATGTTGGCAACACAATTATAAAGTAATGCTCATATACCAAAGTATTGTTCCATTGCAGTCTAAGACTTTTCAGCTTTTATTATTACAATTTTAGTGATATACTATATATCATAATTTGTAGTTCGTGGAGGTGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|18 ): TTATTTTTGTTCAATTACCATTCTTGATTCATTCAACATTTTCAATTTCAAATATCTTGTAGGAGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGTTTTTTTTTTTTGAAA
Alignments
lowQualScore : 111111111 888888888888888888888888888888888888888888888888888 222222 11111111 111
lowQualScore : 0 55 555 333333333 555555 777777777777777777777777777777777777777777777777777 33 1 2 5555 2 5555 2 2 2 33 2 2 666666 8888888 0 2 44 333333 2 1 11111111 777 555
lowQualScore : . .. ... ......... ...... ................................................... .. . . .... . .... . . . .. . . ...... ....... . . .. ...... . . ........ ... ...
lowQualScore : 7 66 888 333333333 999999 000000000000000000000000000000000000000000000000000 77 2 7 3333 5 0000 4 4 4 22 4 4 888888 1111111 6 1 22 111111 1 0 22222222 555 888
consensus : AAGGGCGGATCCAGCGGGGGGG-GGGGGGGGGGG---GGGGG---------GGG--G---GGGT--C----------G-A---CCCCC-C------------------T-----G--GAATTTTCA-AGATATAGA----CCTATAGTAAAA-TGT----ACTGTG-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTGGAAAGATATAGAATCTAANTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAACGATTCTCATTAACAAAGNATGTTANAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAAT
Reference ( family-6416 ) : AAGGGCGGATCCAGCGGGGGGG-GGGGGGGGGGG---GGGGG---------GGG--G---GGGT--C----------G-A---CCCCC-C------------------T-----G--GAATTTTCA-AGATATAGA----CCTATAGTAAAA-TGT----ACTGTG-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTGGAAAGATATAGAATCTAANTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAACGATTCTCATTAACAAAGNATGTTANAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAAT
gi|1 : CCAGTGGGGGGG-GGGGGGGGGGG---GGGGG---------GGG--G---GGG--------------G------------------------------------G--GAATCT------GTTTAAA----CCGA-AATAAAA-TAT----ACT----AATA-ATT--GTAAAA--CTGGAATTTGATATA------TACTT
gi|10 : ataataatcaaagttccatttccaaacacttgtttcttacaattccataaaggaatgttaccttttgaaatattttcaatgaggttcctaatttggcgcactacaggtgttatatattacaatacttttcatgttcagatttaataaaacctagtctgatagttaaag---CCCCC-T------------------T-----G--GATTTTTCA-AGATATAGA----CCTATAGTAAAA-TGT----ACTGTG-AA-C-ATTTTATAAAA--CTAG-ATCT-ACATA------AACATACAA-------ACTGGGTGGAAAGATATAAAATCTAACTATTATTTAAAAGGAATATGAATT--ACGTATAGATCTACAACGATTCTCATTAACAAAGAATGTTAAAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAATttgacaggagaaattaagataaaacaattgttgaaaatgagttgatt
gi|11 : gcagatccaggagccccacGGGGGGGGG---GGGGG---------GGG--G---GGGT-----------------------------------------------------------TCA-AGATATAAA----CCTATAGTAAAA-TGT----ACTGAG-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATA------AACTTACAACTTACAAACTGGGTGGAAA---------TTTAACTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAACGATTCTCATTAACAAAGAATGTTAAAAACGATAAATAATT--------GTATTAATGTCCACGTGTACAAATCA---T---CCATCCAATa
gi|12 : ---CCCCC-C------------------T-----G--GAATTTTCA-AGATATAGA----CCTATAGTAAAC-TGT----ACTGTG-AA-A-GTTAAATCAAA--TTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTG---------ACAATATAAATATTATTTAATAGGAATATGA--T--A-GTGT------------------GTTAACAAAGCATGTTATAAACGACAAATAATT--------GTAGTAATGTACGTGTGCACAAATCATCCT---CCATCCAATa
gi|13 : aagggcggatccagcgttgtccggaccccccAAGGGCGGATCCAGCGGGGGTG------------------------------GG--A---GGA--------------------------C------------------T-----G--GAATTTTGA-AGATATAGA----CCTATAATAAAC-TGT----ACTGTGCAA-A-ATTTAATCAAA--CTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTGACAAGATATAGAATCTAAATATTATTTAATAGGAATATAAATT--ATGTG------TACAA----------TAA-----------ATAAAAGACAAATAATT--------GTATTAATTGCCGCGTGCACAAa
gi|15 : cT----ACTGTG-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATG------AACTTACAA-------ACTGGGTGGAAAGATATAG--TCTAACTATTATTTAATAGGAATATGAATT--ACGCGTAGATCTAGAACGATTCTC-TTAACAAAGAATGTTACAAAGGACAAATTATT--------GTATTAATGTCTGCGTGCACAAATCA---T---CCATCCAA
gi|16 : CGAGGGGG-GGGGGGGGGGG---GGGGG---------GGG--G---GGGT--CAGGGGACCCGG-A---CCCCC-C------------------T-----G--GAATGTTCA-AGCTATAAA----CCTATAGTAAAA-TGT----ACTATG-AA-A-ATTAATTAAAA--CTAG-ATCT-ACATA------AACTTACAA-------ACTTGTTGGAAA
gi|17 : GGGGGGG---GGGGG---------GGG--G---GGGT--A----------G-G---C-----------------------------------AT------ACATGTACA----CGTAT--TAGGATTGTTTAAAATGCG-AG-ATATTAAAAAAAA--ATAG-GACT-ACACA------GACTTACAA-------
gi|19 : ATAAA----CCTATAGTAAAA-TGT----ACTGTG-AA-C-ATTTAATAAAA--CTAG-ATCT-ACATA------AACTTACAA-------ACTGGGTGGAAAGATATAatgtataacaggtacttactagatggaattataac
gi|2 : CCCT-C------------------T-----ATAGAATTTTCA-AGATATAGA----CCTATAGAAAAA-TAT----ACTGTG-AA-A-ATTTAAAAAAAAACTAA-ATCT-ACATA------AACTTAAAA-------GCTGGGTGGAAGGATATAAAATCTAAATATTATTTAATAGGAATATGAATT--ACGTGTTGATCTACAACGATTCTCATTAACATAGAATGTTAAAAA-AACAGATCATTATTAATAAGTATTAATGCCCGCGTGCACAAATCA---T---CCATTCAAT
gi|3 : caagtgcagatccagttggggtcggtggcccccccccccccctcccaacaaacactAGGGCGGATCTAGCGGAGAGG-AGGGGGTCAGG---GG------------------------T--CCG--------G-A---CCCCC-CCCCCCCCACACACACACCT-----G--GATTATATATATATATAGA----CCTATAGTAAAC-T------ACTGTG-GA-C-ATTTAATCAAA--CTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTGACAAGATATAGAATCTAAATACTATTTAATAGGAATATGAATT--ATGTG------TACAACAATTCTCATTAACAAAGCATGTTACAAACGACAAATAATT--------GTATTAATGTCTGCGTGCACAAATCATCCT---CCATCCAAT
gi|4 : AAGGGATGATTCAGCGGAGTGT-GTGTGTGTGTG---TGGGG---------GGG--G---GGCT--C------------A---TCCCC-C------------------T-----G--GAATCTTTG-AGATATAAA----CCTACAGTAAAA-TGT----ACTGTA-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATA------CACTTACAA-------ACTGGGTGGAAAGATATAGAGTCTTACTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAACGATTCTCATTAACAAAGAATGTTAAAAAGGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAAa
gi|5 : cAAGGGCGAATACAGCGGGGAGA-GGGGGGGGGGGAGCGGGGGCGTGCAAGCGGG--GTGAGGGTACC----------G-GACGCCCCC-C------------------TCCCATG--GAGTTTTCA-ATATATAGA----CCTATAGTAAAC-TGT----ACTGTG-AA-A-ATTTAATCAAA--CTAG-ATCT-ACATA------AACTTACAA-------TCTGGGTGACAAGA-----AAT----------------------ATGAATT--ATGTG------TACAACAATTCTCATTAACAAAGCATGTTACAAACGACAAATAATT--------GTATTAATGTCCGCGTACACAAATCA---TTCCCCATCCAATaa
gi|6 : gcAAAGGCGGATCCAGCGAGAGGGTGGGGGGGGGGG---GGGGG---------GGG--G---GGGT--T----------GTA----------------------------------G--GAATTTTCA-AGATATAGA----CCTATAATAAAA-TGT----ACTGT--------TTTAATAAAA--CTAG-ATCT-ACATACCGGTAAACTTACAA-------GCTGGTTGGAAAGATATAGAATCTAACTATTATTTAATAGGAATATGAATT--ACGTGTAGATCTACAATGATTCTCATTAACAAAGCATGTTAAAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACGAATCA---T---CCATCCAAT
gi|7 : AAGGACGGATCCAGCGGGGGGT-CAGAGGGG--------------------------------T--CCT--------G-A---CCCCC-CC-----------------T-----G--GAATTTTCA-ATATATATATATACCTATAGTAAAC-TGT----ACTGTG-AA-A-ATTTAATCAAA--CTAG-ATTT-ACATA------AACTTACAA-------GCTGGGTGACAAGATATAGAATCTAAATAGTATTTAATAGGAATAGGAATTTAATGCG------TACAACAATTCTCAATAACAAAGCATGTTACAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCATCCT---CCATCCAAT
gi|8 : aAAGGGCGGATCCAGCGGGG----------GGGGG---GGGGG---------GGGCAG---GGG---------------------------------------------------G--GAATTTTCA-AGATATAAA----CCTATAGTAAAA-TGT----ACTGTG-AA-A-ATTTAATAAAA--CTAG-ATCT-ACATA------AACTTACAA-------ACTGGGTGGAAAGATATAGAGTCAAACTATTATTCATAAGGAGTATGAATT--ACGTGTAGATCAACAACGATTCTCATTAACAAAGAATGTTAAAAACGACAAATAATT--------GTATTAATGTCCGCGTGCACAAATCA---T---CCATCCAATat
gi|9 : tgcGGCGGGG-GGGGGGGGGGG---GGGGG---------GGG--G---GGGT--CCA--------G-A---CCCCCAC------------------T-----G--GAATTTTCG-AGATAAAGA----CCTATAGTAAAC-TGT----GCTGTG-AA-A-ATTTACTCAAA--CTAG-ATCT-ACATA------AACTTACAA-------GCTGGGTGACAAGATATAGAATCTAAATATTATTTAATAGAAATATAAAGT--ATGTG------TACACCAATTCTAATTAACAAAGCATGTTACAAACGACGCATAATT--------GTATAAATCTCCACGTACACAAATCA---T---CC-TCCAa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TCATATTCAATGATCCATCAAACCATATGTTGGCAACACAATTATAAAGTAATGCTCATATACCAAAGTATTGTTCCATTGCAGTCTAAGACTTTTCAGCTTTTATTATTACAATTTTAGTGATATACTATATATCATAATTTGTAGTTCGTGGAGGTGGGGGGGGGGGGGGGGGGGGGGGGGGG
Unaligned ( gi|18 ): TTATTTTTGTTCAATTACCATTCTTGATTCATTCAACATTTTCAATTTCAAATATCTTGTAGGAGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGTTTTTTTTTTTTGAAA