lowQualScore : 11111111111111111111111111111111111111111111111111111 222222222222222222222222222222
lowQualScore : 11 33333 11 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 222 2 00000000000000000000000000000000000000000000000000000 2 5555555 22 22 555555555555555555555555555555 11111 222 33 1 1 1 222
lowQualScore : 6 2 44 2 3 4 99 4 4 3 44444 33 4 4 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 6 8 1 1 77777777777777777777777777777777777777777777777777777 1 5555555 6 11 6 6 6 33 777777777777777777777777777777 55555 777 22 5 5 5 111
lowQualScore : . . .. . . . .. . . . ..... .. . . ............................................................................................................................ ... . . . . ..................................................... . ....... . .. . . . .. .............................. ..... ... .. . . . ...
lowQualScore : 0 8 00 7 9 4 22 0 0 9 22222 55 0 0 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222 7 0 0 6 22222222222222222222222222222222222222222222222222222 0 5555555 0 00 0 0 0 00 000000000000000000000000000000 00000 000 00 0 0 0 000
consensus : AGATACAGTCTNGACTGTCTTAAGTGA-CCGTCCAAGG-GAAT-CGG-NT-AAAA--G-GTCA-CATAAGACA---GG-AG--GTTG-T-ATA--A--TACA--GCCAAC----TG-AT-TTAGGACG-----T------T---CC---T---TGA---TT----C--A-----TA--A-TAGATTGTGTGT-T--ACATAAACA-GTATT-TATATGACATGTT-TTGTTCACATACAGT------TCTAGTCATTAATA--A--NCGTACATGTATNATG-T-TTTGTTACTTT-AACACAGACT-ACATGTAAACGTCATTGCTTTTAACTATAATTGTTTTCC---TACTGATAAC-----------AA-AAAACGTCATTTCATCTGTTTTCTTTCACTTTTTTCTGTAACTTATCATTATAGAACTA
Reference ( gi|1 ) : AAATACAGCCCTGACTGTTTTAAATGA-CTGTCCAAGG-GAAT-CAG-TT-TAAA--G-GTCA-CATAAGACA--CGG-AG--ATTA-T-ATATTAT-TATA--GTCAAC----TG-AT-TTAGGACA-----T------T---CT---T---TGA---TT----C--A-----TA--AGTAGATTGTGTGTGTCGGCATAAACA-TCATT-TATATGACATGTT-TTGATCACATACAGT------TTTGGTCATTGATA--A--GCATACATGTATCATGTTTTTTGGTACTTTAAACATGGACTTACATATAAATTTCATTACTTTCAACTGTAACAGTTTCACATATATTTATAATTTTTATCTATGAACAAAATATTGTTCTCTCTGTTTTCTTTCACTTGATTGTGTAAGTTATCATGATATACCTACTAACA
gi|14 : AGATACAGTTTGGATTGTCTTAAGTGA-CCATCCGAGG-GAAT-C---------A--G-GTCA-CATAA
gi|12 : ttgagatattattgATATAGTTTAGACTGTTGTAAGTGA-GCATCCAAGG-GAAC-CAG-GT-TAAAATG-GTCA-CATAAG
gi|9 : tttaatatttttttattattttcaatATACAGTCTAGACTGTCTTAAGTGA-CATTCCAGGGTG----CGG-G---GGA--G-GTCA-CATAAGACA---GG-CG--GTTG-TCACA-----TACA--GTAAAG----GG-AT-TAAGGAC------T------T---CA---TCACTGA---TT----C--g
gi|8 : attTACAGTCTAGACTGTTTAAAGTGA-CTGTGTA-GG-GAAT-CAG-GT-AAAAC-G-GTCA-CATAAGAC-------AG--GTTGCT-ATA-----TAAA--ACCAAC----TG-AT-TTAGGcaac
gi|10 : catttaataaattattatgtaattgatgtaaatgCCTTGACTGTCTTAAATGA-CCGTCAAAGG-AAAT-CAGATA-AAAA--G-GTTG-CATAAGACA--TGG--G--ATTGTT-ATA-----TACA--AACAAG----GG-AT-AGAGGATG-----C------T---CCTTAT---TGA---TT----C--A-----gttttt
gi|6 : CTTGACTGTCT-AAGTGA-CCTTCCAAGG-GAA----------AAA--G-ATAAATATAGGATA--GGG-AGTCATTA-T-ATA--A---ACA---TCAAC----TG-AT-CTAGGACA-----T------T---CC---T---C-----TT----C----------------GATT-------------TAAACA-AAATT-TATATGGTATGTT-TAATTCACATACAGT------ATTAGTCAACAATA--ACTGTGTCCAT-TATAATA---TTTGTTACTTTGAAaaca
gi|11 : ataatGACTGTCTTAAGTGAACCGTCCAAGG-GAAT-CGG-TTATAAA--A-GGCA-CATAAG-CAAGCGGAAG--A--A-C-ATGGTAC-AATT--GACAAT----TG-ATATTAATACA-----T------T---
gi|4 : taATTGTCTTGAATGA-TCTTTCAAAG-GAAT-CAG-GA-GAAA--AAGTCA-CATGGGACA--GGG-AG---TTA-T-A----ATATACA--GCCAAC----AT-AT-TAATGGCA-----TGAATCCT---CT---T---TGA---TTTAAAC--A-----TT--TATACATTGTGCATGT--GCATAAACA-GCATT-TATATGACATGTT-CGGTTCACATAC----------CTGGT-ATTAAT-------CAT---TG-ATTATGGTATTTGTTACTTTTAACACAGACT
gi|3 : agtctaaCTGTCTTAATTGG-CCATCCACGG-GAATTCAG-TG-AAAA--G-GTCA-CATAAGGCA---GG-AG--GTCG-T-----TATATATA--ACCAA-----TGTAT-TGAGGAC------------------T---T---TAAATATT----T--A-----TA--A----ATTGTGTGTTT--ACCTAA-CA-GTATT-TATATGGCATGTT-TTGTTCACATGTAATATTATATTTTAACATGAATATGA--TCATAAATGTAT--TGTTTCTTG
gi|7 : aaatatctaataaaaatgcattttcaatgccatctagtAAGA-GAGT-CTG-CT-AAAAA-G-GTCA-CATAAGACA---GG-AT--ATTA-T-A----A---ACA--ACCAACAGATTT-AT-TTAGGACA-----T------T---CC---TCATTGA---TT----C--AAACATTA--A-TAAATTGTGTGT------ATAAACA-GTATT-TATATAACTTATT-TTG----TATACAGaactaaatttgttttcata
gi|2 : TTAT-TATACAGTCAAC----TG-AT-TTAGGACATTTCTT------T---CT---T---T-A---TT----CAAA-----TATTAGTAAAT--TGTGTGTTGACATACATATTCAGTATTTATGACAAATTGTTGTTCACATA-AG-------TCAAGTCATTGATT--A--ATTTAC-----TCAT---------TATTGT-AACA--AA---ACATGTAAACGTCATTGCTTTTAACTATAATTGTTTTCC---TACTGATAAC-----------AA-AAAACGTCATTTCATCTGTTTTCTTTCACTTTTTTCTGTAACTTATCATTATAGAACTAgaatat
gi|5 : gagggA--GCCAAC----TT-AT-TTAGAATG-----T------TTCTCT---T---TGA---TT----C--A-----gttac
gi|13 : gacaaggggtcactgcatgcTAGATTGTGTGTTT--ACACAAACA-GTGTT-TATATGACATATaacattgatagatattacatttaaacagtattcgaagtcattatggtatttgatacttttaaaacagatacaaatgtagacctaaatgtcattgctttcaactacaatttttttcagacgcacgaatgtctttccatttgttttatttcactttagtatgtaact
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): ACCAATAGATTTAGAGCGTTCCTCATTAATTCAAACACTTATAAATTATGTGTG
Unaligned ( gi|16 ): TATGGGTTCTGTACCTTCACTGTGTCCATTACAATATTTGTTACTT
Alignments
lowQualScore : 11111111 1 33333333333333333 2222222222222222222222 444444444444 333333333 1111 11111111 1111 44444444444444444444444444 1 11 11 333333 777777777777777777777777777
lowQualScore : 1 4 2 3 3 66666666 0 4 3 11111111111111111 6666 88888 3 3 6666666666666666666666 4 777777777777 4 0 0 111111111 0000 6 44444444 7777 88888888888888888888888888 1 8 6 0 2 88 88 888888 1 777777777777777777777777777 88 4 1 8 6 3 2 3
lowQualScore : . . . . . ........ . . . ................. .... ..... . . ...................... . ............ . . . ......... .... . ........ .... .......................... . . . . . .. .. ...... . ........................... .. . . . . . . .
lowQualScore : 0 0 3 6 6 55555555 9 0 2 00000000000000000 7777 11111 3 3 2222222222222222222222 1 666666666666 4 9 1 888888888 6666 7 22222222 0000 88888888888888888888888888 0 0 0 2 5 88 33 333333 0 777777777777777777777777777 00 7 0 3 7 0 5 0
consensus : AGATACAGTCTAGACTGTCTTAAGTGA-CCGTCCAAGG-GAAT-C-GG--NT-AAAA-GGTCACATAAGACA-GGGGGT---TG--T-ATA--AT-ACA---GCCAAC----TG-AT-TTAGGACG----T------TCC---T---TGATTCAAA-A-TA-----A-TAGATTGTGTGT-T--ACA--TAAA----CAGTATTTATATGACATGTT-TTGTTCACATACA--GTTCTAGT----CATCGATA--ANCGTA--CATGTATCGTG--T-TTTGTTAC-TTT-AACACGGAC-TACA--TGTAAAC------GTCATTGCTTTCAACTATAATTGTTTTCC---TACT-ATAAC-----------AA-AAAACGTCGTTCCATCTGTTTTCTTTCACTTTATTNTGTAACTTATCATNATANANCTA
Reference ( family-6367 ) : AGATACAGTCTNGACTGTCTTAAGTGA-CCGTCCAAGG-GAAT-C-GG--NT-AAAA-GGTCACATAAGACA-GGAGGT---TG--T-ATA--AT-ACA---GCCAAC----TG-AT-TTAGGACG----T------TCC---T---TGATTCA-----TA-----A-TAGATTGTGTGT-T--ACA--TAAA----CAGTATTTATATGACATGTT-TTGTTCACATACA--GTTCTAGT----CATTAATA--ANCGTA--CATGTATNATG--T-TTTGTTAC-TTT-AACACAGAC-TACA--TGTAAAC------GTCATTGCTTTTAACTATAATTGTTTTCC---TACTGATAAC-----------AA-AAAACGTCATTTCATCTGTTTTCTTTCACTTTTTTCTGTAACTTATCATTATAGAACTA
gi|1 : AAATACAGCCCTGACTGTTTTAAATGA-CTGTCCAAGG-GAAT-C-AG--TT-TAAA-GGTCACATAAGACACGGAGAT---TA--T-ATATTATTATA---GTCAAC----TG-AT-TTAGGACA----T------TCT---T---TGATTCA-----TA-----AGTAGATTGTGTGTGTCGGCA--TAAA----CATCATTTATATGACATGTT-TTGATCACATACA--GTTTTGGT----CATTGATA--AGCATA--CATGTATCATGTTT-TTTGGTAC-TTTAAACATGGACTTACA--TATAAAT------TTCATTACTTTCAACTGTAACAGTTTCACATATATTTATAATTTTTATCTATGAACAAAATATTGTTCTCTCTGTTTTCTTTCACTTGATTGTGTAAGTTATCATGATATACCTA
gi|10 : CTTGACTGTCTTAAATGA-CCGTCAAAGG-AAAT-C-AG--ATAAAAA-GGTTGCATAAGACA-TGGGAT---TG--T--TAT-AT-ACA---AACAAG----GG-AT-AGAGGATG----C------TCCTTAT---TGATTCA-----ctaaca
gi|11 : cTAGACTGTCTTAAGTGAACCGTCCAAGG-GAAT-C-GGTTAT-AAAA-GG-CACATAAG-CA-AGCGGA---AGAAC-ATG--GT-ACAATTGACAAT----TG-ATATTAATACA----T------Taaca
gi|12 : ATATAGTTTAGACTGTTGTAAGTGA-GCATCCAAGG-GAAC-CAGG--TT-AAAATGGTCACATAAG
gi|13 : tttaatatttttttattattttcaat-----TG-----A-TAGATTGTGTGT-TT-ACA--CAAA----CAGTGTTTATATGACATATg
gi|14 : tctgtagttcaaacatAGATACAGTTTGGATTGTCTTAAGTGA-CCATCCGAGG-GAAT-C-----------A-GGTCACATAAacaggggtcatacc
gi|15 : ttgagatattattgCCAAT----AG-AT-TTAGAGCG----T------TCCTCAT---TAATTCAAACACTT-----A-TAAATTATGTGT-
gi|2 : aGAGGG---T---T-ATT--AT-ACA---GTCAAC----TG-AT-TTAGGACATTTCT------TTC---T---TTATTCAAATATTA-----G-TAAATTGTGTGT-TG-ACA--TACATATTCAGTATT--TATGACAAATTGTTGTTCACATA-A--G-TCAAGT----CATTGATT--AATTTA--C---------------TCATTAT-TGT-AACAAA-----ACA--TGTAAAC------GTCATTGCTTTTAACTATAATTGTTTTCC---TACTGATAAC-----------AA-AAAACGTCATTTCATCTGTTTTCTTTCACTTTTTTCTGTAACTTATCATTATAGAACTAg
gi|3 : ATGCCATCTAGTCTGTCTTAATTGG-CCATCCACGG-GAATTC-AG--TG-AAAA-GGTCACATAAGGCA-GGAGGT---CG--TTATA---T-ATA---ACCAA-----TGTAT-TGAGGACT----T------TAA---A---T-ATTTA-----TA-----A----ATTGTGTGT-TT-ACC--TAA-----CAGTATTTATATGGCATGTT-TTGTTCACATGTAATATTATATTTTAACATGAATATGATCATA--AATGTATTGTT--T-CTTGgttac
gi|4 : aaatatctaataaaaatgcattttcaAGTCTAAATTGTCTTGAATGA-TCTTTCAAAG-GAAT-CAGG--AG-AAAA-AGTCACATGGGACA-GGGAGT---TA--T-AAT--AT-ACA---GCCAAC----AT-AT-TAATGGCA----TGAATCCTCT---T---TGATTTA-----AACATTTA-TACATTGTGCATGT--GCA--TAAA----CAGCATTTATATGACATGTT-CGGTTCACATAC------CTGGT-----ATTAATC--ATTG-----AT-TATGGTA----TTTGTTACTTTT-AACACAGAC-Taactaaatttgttttcata
gi|5 : GACA-AGGGGTCACTG--C-ATG------CA---GCCAAC----TT-AT-TTAGAATG----TTTC---TCT---T---TGATTCAAACATTG-----A-TAGA-----TAT-T--ACATTTAAA----CAGTATT
gi|5 : ATTATGG-TATTTGATAC-TTTTAAAACAGA--TACAAATGTAGACCTAAATGTCATTGCTTTCAACTACAATTTTTTTCA---GAC-----GC-----------AC-GAA-TGTCTTTCCATTTGTTTTATTTCACTTTAGTATGTAACTcgaagtcattatggtatttgatacttttaaaacagatacaaatgtagacctaaatgtcattgctttcaactacaatttttttcagacgcacgaatgtctttccatttgttttatttcactttagtatgtaact
gi|6 : gacaaggggtcactgcatgcagccaacttatttagaatgtttctctttgattcaaacattgatagatattacatttaaacagtattcgaagtcATAATCTTGACTGTCT-AAGTGA-CCTTCCAAGG-GAAA-A-AG--AT-AAA-------TATAGGATA-GGGAGTCATTA--T-ATA--A--ACA----TCAAC----TG-AT-CTAGGACA----T------TCC---T---C--TTC-----------------GATT---------------TAAA----CAAAATTTATATGGTATGTT-TAATTCACATACA--GTATTAGT----CAACAATA--ACTGTGTCCAT-TATAATA----TTTGTTAC-TTT-GA
gi|7 : AAGA-GAGT-C-TG--CT-AAAAAGGTCACATAAGACA-GGATAT---T-----ATA--A--ACA---ACCAACAGATTT-AT-TTAGGACA----T------TCC---TCATTGATTCAAACATTA-----A-TAAATTGTGTGT------A--TAAA----CAGTATTTATATAACTTATT-TTGT----ATACA--Ga
gi|8 : TACAGTCTAGACTGTTTAAAGTGA-CTGTGTA-GG-GAAT-C-AG--GT-AAAACGGTCACATAAGACA-GGTTGC---TA--T-ATA--A----A---ACCAAC----TG-AT-TTAGGgaatat
gi|9 : catttaataaattattatgtaattgatgtaaatgATACAGTCTAGACTGTCTTAAGTGA-CATTCCAGGGTG----C-GG--G---GGA-GGTCACATAAGACA-GGCGGT---TG--T-CAC--AT-ACA---GTAAAG----GG-AT-TAAGGACT----TCA----TCA---C---TGATTCgttttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TATGGGTTCTGTACCTTCACTGTGTCCATTACAATATTTGTTACTT
Alignments
lowQualScore : 11111111 1 222222222222222222222 3333333333333333333333 444444444 333333333 1111 111111 11 1111 5555555555555555555555555 1 11 22 11 333333 99999999999999999999999999999 1
lowQualScore : 0 4 2 3 3 66666666 0 3 1 777777777777777777777 6666 88888 3 3 3 0000000000000000000000 999999999 4 0 111111111 0000 6 222222 55 7777 4 9999999999999999999999999 1 1 8 6 00 55 88 888888 44444444444444444444444444444 7 2 3 1 1 1 1
lowQualScore : . . . . . ........ . . . ..................... .... ..... . . . ...................... ......... . . ......... .... . ...... .. .... . ......................... . . . . .. .. .. ...... ............................. . . . . . . .
lowQualScore : 3 0 3 6 6 55555555 9 6 2 999999999999999999999 7777 11111 3 3 3 1111111111111111111111 000000000 4 1 888888888 6666 7 888888 88 0000 6 3333333333333333333333333 7 0 0 0 88 00 33 333333 77777777777777777777777777777 3 0 7 0 0 0 0
consensus : AGATACAGTCTAGACTGTCTTAAGTGA-CCGTCCAAGG-GAAT-C-GG--NT-AAAA-GGTCACATAAGACA-GGGGG---T---TG--T-ATA--AT-ACA---GCCAAC----TG-AT-TTAGGACGT------TCC---T---TG----ATTCAAACA-T-A---A-TAGATTGTGTGT-T--ACA--TAAA----CAGTATTTATATGACATGTT-TTGTTCACATAC--A--GTNTTAGT----CATCGATA--ANCGTA--CAT-TATNGTA--TTTTGTTAC-TTT-AACACGGAC-TACA--TGTAAAC------GTCATTGCTTTCAACTATAATTGTT----------------TTCNTA-CT-AT-AACAAAAAACGTCGTTCCATCTGTTTTCTTTCACTTTATTNTGTAACTTATCATNATANANCTA
Reference ( family-6367 ) : AGATACAGTCTAGACTGTCTTAAGTGA-CCGTCCAAGG-GAAT-C-GG--NT-AAAA-GGTCACATAAGACA-GGGGG---T---TG--T-ATA--AT-ACA---GCCAAC----TG-AT-TTAGGACGT------TCC---T---TG----ATTCAAA-A-T-A---A-TAGATTGTGTGT-T--ACA--TAAA----CAGTATTTATATGACATGTT-TTGTTCACATAC--A--GTTCTAGT----CATCGATA--ANCGTA--CATGTATCGTG--TTTTGTTAC-TTT-AACACGGAC-TACA--TGTAAAC------GTCATTGCTTTCAACTATAATTGTT----------------TTCCTA-CT-AT-AACAAAAAACGTCGTTCCATCTGTTTTCTTTCACTTTATTNTGTAACTTATCATNATANANCTA
gi|1 : AAATACAGCCCTGACTGTTTTAAATGA-CTGTCCAAGG-GAAT-C-AG--TT-TAAA-GGTCACATAAGACACGGAGA---T---TA--T-ATATTATTATA---GTCAAC----TG-AT-TTAGGACAT------TCT---T---TG----ATTCA-----T-A---AGTAGATTGTGTGTGTCGGCA--TAAA----CATCATTTATATGACATGTT-TTGATCACATAC--A--GTTTTGGT----CATTGATA--AGCATA--CATGTATCATGTTTTTTGGTAC-TTTAAACATGGACTTACA--TATAAAT------TTCATTACTTTCAACTGTAACAGTTTCACATATATTTATAATTTTTATCT-ATGAACAAAATA--TTGTTCTCTCTGTTTTCTTTCACTTGATTGTGTAAGTTATCATGATATACCTA
gi|10 : CTTGACTGTCTTAAATGA-CCGTCAAAGG-AAAT-C-AG--ATAAAAA-GGTTGCATAAGACA-TGGGA---T---TG--T--TAT-AT-ACA---AACAAG----GG-AT-AGAGGATGC------TCCTTAT---TG----ATTCAAA-ctaaca
gi|11 : cTAGACTGTCTTAAGTGAACCGTCCAAGG-GAAT-C-GGTTAT-AAAA-GG-CACATAAG-CA-AGCGG---A---AGAAC-ATG--GT-ACAATTGACAAT----TG-ATATTAATACAT------Tca
gi|12 : ATATAGTTTAGACTGTTGTAAGTGA-GCATCCAAGG-GAAC-CAGG--TT-AAAATGGTCACATAAG
gi|13 : tttaatatttttttattattttcaatTTCAAACA-TTG---A-TAGATTGTGTGT-TT-ACA--CAAA----CAGTGTTTATATGACATATg
gi|14 : tctgtagAGATACAGTTTGGATTGTCTTAAGTGA-CCATCCGAGG-GAAT-C-----------A-GGTCACATAAacaggggtcatacc
gi|15 : ttgagatattattgCCAAT----AG-AT-TTAGAGCGT------TCCTCAT---TA----ATTCAAACACT-T---A-TAAATTATGTGT-
gi|2 : a-GAGGG---T---T-----ATT--AT-ACA---GTCAAC----TG-AT-TTAGGACAT------TTC---T---TTCTTTATTCAAATA-TTA---G-TAAATTGTGTGT-TG-ACA--TACATATTCAGTATTTAT--GACAAATTGTTGTTCACATA---A--GT-CAAGT----CATTGATT--AATTTA--C--------------TCATTAT-TGT-AACA--AA---ACA--TGTAAAC------GTCATTGCTTTTAACTATAATTGTT----------------TTCCTA-CTGAT-AACAAAAAACGTCATTTCATCTGTTTTCTTTCACTTTTTTCTGTAACTTATCATTATAGAACTAg
gi|3 : ATGCCATCTAGTCTGTCTTAATTGG-CCATCCACGG-GAATTC-AG--TG-AAAA-GGTCACATAAGGCA-GGAGG---T---CG--TTATA---T-ATA---ACCAA-----TGTAT-TGAGGACTT------T--------------------AA-A-T-ATTTA-TAAATTGTGTGT-TT-ACC--TAA-----CAGTATTTATATGGCATGTT-TTGTTCACATGT--AATATTATATTTTAACATGAATATGATCATA--AATGTATTGTT--TCTTGgttac
gi|4 : aaatatctaataaaaatgcattttcaAGTCTAAATTGTCTTGAATGA-TCTTTCAAAG-GAAT-CAGG--AG-AAAA-AGTCACATGGGACA-GGGAG---T---TA--T-AAT--AT-ACA---GCCAAC----AT-AT-TAATGGCATGAATCCTCT---T---TG----ATTTAAACA-T-TT--A-TACATTGTGCATGT--GCA--TAAA----CAGCATTTATATGACATGTT-CGGTTCACATACCTG--GTATTAAT----CATTGAT---------------TATGGTA---TTTGTTACTTTT-AACACAGAC-Taactaaatttgttttcata
gi|5 : GACA-AGGGG---TCACTG--C-ATG------CA---GCCAAC----TT-AT-TTAGAATGTTTC---TCT---T---TG----ATTCAAACATT-G---A-TAGA-----TAT-T--ACATTTAAA----CAGTATT
gi|5 : --CAT-TATGGTA--TTT-GATAC-TTTTAAAACAGA--TACAAATGTAGACCTAAATGTCATTGCTTTCAACTACAATTTTT----------------TTCAGA-C------GC-ACGAATGTCTTTCCATTTGTTTTATTTCACTTTAGTATGTAACTcgaagtcattatggtatttgatacttttaaaacagatacaaatgtagacctaaatgtcattgctttcaactacaatttttttcagacgcacgaatgtctttccatttgttttatttcactttagtatgtaact
gi|6 : gacaaggggtcactgcatgcagccaacttatttagaatgtttctctttgattcaaacattgatagatattacatttaaacagtattcgaagtATAATCTTGACTGTCT-AAGTGA-CCTTCCAAGG-GAAA-A-AG--AT-AA-------ATATAGGATA-GGGAGTCAT---TA--T-ATA--A--ACA----TCAAC----TG-AT-CTAGGACAT------TCC---T---C------TTC----------------GATT---------------TAAA----CAAAATTTATATGGTATGTT-TAATTCACATAC--A--GTATTAGT----CAACAATA--ACTGTGTCCAT-TATAATA---TTTGTTAC-TTT-GA
gi|7 : AAGA-GAGT-C-TG--CT-AAAAAGGTCACATAAGACA-GGATA---T---T-----ATA--A--ACA---ACCAACAGATTT-AT-TTAGGACAT------TCC---TCATTG----ATTCAAACA-TTA---A-TAAATTGTGTGT------A--TAAA----CAGTATTTATATAACTTATT-TTGT----ATAC--A--Ga
gi|8 : TACAGTCTAGACTGTTTAAAGTGA-CTGTGT-AGG-GAAT-C-AG--GT-AAAACGGTCACATAAGACA-GGTTG---C---TA--T-ATA--A----A---ACCAAC----TG-AT-TTAGGgaatat
gi|9 : catttaataaattattatgtaattgatgtaaatgATACAGTCTAGACTGTCTTAAGTGA-CATTCCAGGGTG----C-GG--G---GGA-GGTCACATAAGACA-GGCGG---T---TG--T-CAC--AT-ACA---GTAAAG----GG-AT-TAAGGACTTCA----TCA---C---TG----ATTCCAA-gttttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TATGGGTTCTGTACCTTCACTGTGTCCATTACAATATTTGTTACTT
Alignments
lowQualScore : 11111111 1 222222222222222222222 333333333333333333333333 3333333 33333 1111 444444444444444444444444444444 1 111 1 1 22 11 333333 1 9999999999999999999999999
lowQualScore : 0 4 2 3 3 66666666 0 3 1 777777777777777777777 6666 88888 3 3 000000000000000000000000 1111111 2 77777 0000 0 2 5 1 0 77 1 999999999999999999999999999999 3 000 5 3 5 8 6 2 2 55 88 888888 3 1 4444444444444444444444444 88 3 1 1 1 1
lowQualScore : . . . . . ........ . . . ..................... .... ..... . . ........................ ....... . ..... .... . . . . . .. . .............................. . ... . . . . . . . .. .. ...... . . ......................... .. . . . . .
lowQualScore : 3 0 3 6 6 55555555 9 6 2 999999999999999999999 7777 11111 3 3 555555555555555555555555 7777777 7 66666 6666 1 2 7 6 7 99 0 888888888888888888888888888888 3 222 5 2 8 0 0 5 0 00 33 333333 3 0 3333333333333333333333333 00 7 0 0 0 0
consensus : AGATACAGTCTAGACTGTCTTAAGTGA-CCGTCCAAGG-GAAT-C-GG--NT-AAAA-GGTCACATAAGACA-GGGGG---T---TG--T-ATA--AT-ACA---GCCAAC----TG-AT-TTAGGACGT------TCC---T---TG----ATTCAAACA-T-N-A-TAGATTGTGTGT-T--ACATAAA----CAGTATTTATATGACATGTT-TTGTTCACATAC--AGTATTA-GT-----CATCGATA--A-CGTA--C--AT-TAT--NGTATTTTGNTAC-TTT-AACACGGAC-TACA--TGTAAAC------GTCATTGCTTTCAACTATAATTGTTTT-CATA---CT-ATAAC-----------AA-AAAACGTCGTTCCATCTGTTTTCTTTCACTTTATTNTGTAACTTATCATNATANANCTA
Reference ( family-6367 ) : AGATACAGTCTAGACTGTCTTAAGTGA-CCGTCCAAGG-GAAT-C-GG--NT-AAAA-GGTCACATAAGACA-GGGGG---T---TG--T-ATA--AT-ACA---GCCAAC----TG-AT-TTAGGACGT------TCC---T---TG----ATTCAAACA-T-A-A-TAGATTGTGTGT-T--ACATAAA----CAGTATTTATATGACATGTT-TTGTTCACATAC--AGTNTTA-GT-----CATCGATA--ANCGTA--C--AT-TAT--NGTATTTTGTTAC-TTT-AACACGGAC-TACA--TGTAAAC------GTCATTGCTTTCAACTATAATTGTTTT-CNTA---CT-ATAAC-----------AA-AAAACGTCGTTCCATCTGTTTTCTTTCACTTTATTNTGTAACTTATCATNATANANCTA
gi|1 : AAATACAGCCCTGACTGTTTTAAATGA-CTGTCCAAGG-GAAT-C-AG--TT-TAAA-GGTCACATAAGACACGGAGA---T---TA--T-ATATTATTATA---GTCAAC----TG-AT-TTAGGACAT------TCT---T---TG----ATT----CA-T-A-AGTAGATTGTGTGTGTCGGCATAAA----CATCATTTATATGACATGTT-TTGATCACATAC--AGTTTTG-GT-----CATTGATA--AGCATA--C--ATGTATCATGTTTTTTGGTAC-TTTAAACATGGACTTACA--TATAAAT------TTCATTACTTTCAACTGTAACAGTTTCACATATATTT-ATAATTTTTATCTATGAACAAAATATTGTTCTCTCTGTTTTCTTTCACTTGATTGTGTAAGTTATCATGATATACCTA
gi|10 : CTTGACTGTCTTAAATGA-CCGTCAAAGG-AAAT-C-AG--ATAAAAA-GGTTGCATAAGACA-TGGGA---T---TG--T--TAT-AT-ACA---AACAAG----GG-AT-AGAGGATGC------TCCTTAT---TG----ATTCAAACA-ctaaca
gi|11 : cTAGACTGTCTTAAGTGAACCGTCCAAGG-GAAT-C-GGTTAT-AAAA-GG-CACATAAG-CA-AGCGG---A---AGAAC-ATG--GT-ACAATTGACAAT----TG-ATATTAATACAT------T
gi|12 : ATATAGTTTAGACTGTTGTAAGTGA-GCATCCAAGG-GAAC-CAGG--TT-AAAATGGTCACATAAG
gi|13 : tttaatatttttttattattttcaatTTCAAACA-TTG-A-TAGATTGTGTGT-TT-ACACAAA----CAGTGTTTATATGACATATg
gi|14 : tctgtagAGATACAGTTTGGATTGTCTTAAGTGA-CCATCCGAGG-GAAT-C-----------A-GGTCACATAAacaggggtcatacc
gi|15 : ttgagatattattgCCAAT----AG-AT-TTAGAGCGT------TCCTCAT---TA----ATTCAAACACT-T-A-TAAATTATGTGT-
gi|2 : a-GAGGG---T---T-----ATT--AT-ACA---GTCAAC----TG-AT-TTAGGACAT------TTC---T---TTCTTTATTCAAATA-TTA-G-TAAATTGTGTGT-TG-ACATACATATTCAGTATTTAT--GACAAATTGTTGTTCACATA---AGTCA-A-GT-----CATTGATT--AATTTA--CTCAT-TAT--TGTA-----------------ACAAA---ACA--TGTAAAC------GTCATTGCTTTTAACTATAATTGTTTT-CCTA---CTGATAAC-----------AA-AAAACGTCATTTCATCTGTTTTCTTTCACTTTTTTCTGTAACTTATCATTATAGAACTAg
gi|3 : ATGCCATCTAGTCTGTCTTAATTGG-CCATCCACGG-GAATTC-AG--TG-AAAA-GGTCACATAAGGCA-GGAGG---T---CG--TTATA---T-ATA---ACCAA-----TGTAT-TGAGGAC-------------------------TTTAAATA-T-TTA-TAAATTGTGTGT-TT-ACCTAA-----CAGTATTTATATGGCATGTT-TTGTTCACATGT--AATATTATATTTTAACATGAATATGATCATA--A--ATGTAT--TGTTTCTTGgttac
gi|4 : aaatatctaataaaaatgcattttcaAGTCTAAATTGTCTTGAATGA-TCTTTCAAAG-GAAT-CAGG--AG-AAAA-AGTCACATGGGACA-GGGAG---T---TA--T-AAT--AT-ACA---GCCAAC----AT-AT-TAATGGCATGAATCCTCT---T---TG----ATTTAAACA-T-TTA-TACATTGTGCATGT--GCATAAA----CAGCATTTATATGACATGTT-CGGTTCACATACCTGGTATTA-AT-----CATTG----------------AT-TAT--GGTA-TTTGTTACTTTT-AACACAGAC-Taactaaatttgttttcata
gi|5 : GACA-AGGGG---TCACTG--C-ATG------CA---GCCAAC----TT-AT-TTAGAATGT------TTC---TCTTTG----ATTCAAAC-----------ATTG-----------ATAGA-------TATT------ACAT-------TTAA---AC--AGTATT------------CGA----A--GT---C--AT-TAT--GGTATTT-GATAC-TTTTAAAACAGA--TACAAATGTAGACCTAAATGTCATTGCTTTCAACTACAATTTTTTT-CAGA---C-----GC-----------AC-GAA-TGTCTTTCCATTTGTTTTATTTCACTTTAGTATGTAACT
gi|6 : ATAATCTTGACTGTCT-AAGTGA-CCTTCCAAGG-GAAA-A-AG--AT-AA-------ATATAGGATA-GGGAGTCAT---TA--T-ATA--A--ACA----TCAAC----TG-AT-CTAGGACAT------TCC---T---C------TTC--------------GATT-------------TAAA----CAAAATTTATATGGTATGTT-TAATTCACATAC--AGTATTA-GT-----CAACAATA--ACTGTGTCC--AT-TAT--AATA-TTTGTTAC-TTT-GA
gi|7 : AAGA-GAGT-C-TG--CT-AAAAAGGTCACATAAGACA-GGATA---T---T-----ATA--A--ACA---ACCAACAGATTT-AT-TTAGGACAT------TCC---TCATTG----ATTCAAACA-TTA-A-TAAATTGTGTGT------ATAAA----CAGTATTTATATAACTTATT-TTGT----ATAC--AGa
gi|8 : TACAGTCTAGACTGTTTAAAGTGA-CTGTGT-AGG-GAAT-C-AG--GT-AAAACGGTCACATAAGACA-GGTTG---C---TA--T-ATA--A----A---ACCAAC----TG-AT-TTAGGgaatat
gi|9 : catttaataaattattatgtaattgatgtaaatgATACAGTCTAGACTGTCTTAAGTGA-CATTCCAGGGTG----C-GG--G---GGA-GGTCACATAAGACA-GGCGG---T---TG--T-CAC--AT-ACA---GTAAAG----GG-AT-TAAGGACTTCA----TCA---C---TG----ATTCCAACgttttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TATGGGTTCTGTACCTTCACTGTGTCCATTACAATATTTGTTACTT
Alignments
lowQualScore : 11111111 1 222222222222222222222 333333333333333333333333 2222 33333 11111 88888888888888888888888888888888888888888888888888 22 111111 222222 111 1 9999999999999999999999999
lowQualScore : 0 4 2 3 3 66666666 0 3 1 777777777777777777777 6666 88888 3 3 000000000000000000000000 4 8888 0 77777 00000 4 2 5 1 0 77 6 22222222222222222222222222222222222222222222222222 88 555555 888888 2 2 777 1 0 6666666666666666666666666 0 3 1 1 1 1
lowQualScore : . . . . . ........ . . . ..................... .... ..... . . ........................ . .... . ..... ..... . . . . . .. . .................................................. .. ...... ...... . . ... . . ......................... . . . . . .
lowQualScore : 3 0 3 6 6 55555555 9 6 2 999999999999999999999 7777 11111 3 3 555555555555555555555555 0 3333 1 66666 88888 1 2 7 6 7 99 7 55555555555555555555555555555555555555555555555555 00 888888 888888 5 5 555 2 0 8888888888888888888888888 7 7 0 0 0 0
consensus : AGATACAGTCTAGACTGTCTTAAGTGA-CCGTCCAAGG-GAAT-C-GG--NT-AAAA-GGTCACATAAGACA-GGGGG---T---TG--T-ATA--AT-ACA---GCCAAC----TG-AT-TTAGGACGT------TCC---T---TG----ATTCAAACA-TT-A-TAGATTGTGTGT-T--ACATAAA----CAGTATTTATATGACATGTT-TTGTTCACATAC--AGT-ATTAGTCATCGAT-AA-C---GT-C--AT-TAT--NGTATTTTG-TAC-TTT-AACACGGAC-TAC-A--T-GTAAAC------GTCATTGCTTTC---AACTATAATTGTTTT-CATA---CT-ATAAC-----------AA-AAAACGTCGTTCCATCTGTTTTCTTTCACTTTATTNTGTAACTTATCATNATANANCTA
Reference ( family-6367 ) : AGATACAGTCTAGACTGTCTTAAGTGA-CCGTCCAAGG-GAAT-C-GG--NT-AAAA-GGTCACATAAGACA-GGGGG---T---TG--T-ATA--AT-ACA---GCCAAC----TG-AT-TTAGGACGT------TCC---T---TG----ATTCAAACA-TN-A-TAGATTGTGTGT-T--ACATAAA----CAGTATTTATATGACATGTT-TTGTTCACATAC--AGT-ATTAGTCATCGAT-AA-C---GTAC--AT-TAT--NGTATTTTGNTAC-TTT-AACACGGAC-TAC-A--T-GTAAAC------GTCATTGCTTTC---AACTATAATTGTTTT-CATA---CT-ATAAC-----------AA-AAAACGTCGTTCCATCTGTTTTCTTTCACTTTATTNTGTAACTTATCATNATANANCTA
gi|1 : AAATACAGCCCTGACTGTTTTAAATGA-CTGTCCAAGG-GAAT-C-AG--TT-TAAA-GGTCACATAAGACACGGAGA---T---TA--T-ATATTATTATA---GTCAAC----TG-AT-TTAGGACAT------TCT---T---TG----ATT----CA-TA-AGTAGATTGTGTGTGTCGGCATAAA----CATCATTTATATGACATGTT-TTGATCACATAC--AGT-TTTGGTCATTGAT-AAGC---ATAC--ATGTATCATGTTTTTTGGTAC-TTTAAACATGGACTTAC-A--T-ATAAAT------TTCATTACTTTC---AACTGTAACAGTTTCACATATATTT-ATAATTTTTATCTATGAACAAAATATTGTTCTCTCTGTTTTCTTTCACTTGATTGTGTAAGTTATCATGATATACCTA
gi|10 : CTTGACTGTCTTAAATGA-CCGTCAAAGG-AAAT-C-AG--ATAAAAA-GGTTGCATAAGACA-TGGGA---T---TG--T--TAT-AT-ACA---AACAAG----GG-AT-AGAGGATGC------TCCTTAT---TG----ATTCAAACA-ctaaca
gi|11 : cTAGACTGTCTTAAGTGAACCGTCCAAGG-GAAT-C-GGTTAT-AAAA-GG-CACATAAG-CA-AGCGG---A---AGAAC-ATG--GT-ACAATTGACAAT----TG-ATATTAATACAT------T
gi|12 : ATATAGTTTAGACTGTTGTAAGTGA-GCATCCAAGG-GAAC-CAGG--TT-AAAATGGTCACATAAG
gi|13 : tttaatatttttttattattttcaatTTCAAACA-TTGA-TAGATTGTGTGT-TT-ACACAAA----CAGTGTTTATATGACATATg
gi|14 : tctgtagAGATACAGTTTGGATTGTCTTAAGTGA-CCATCCGAGG-GAAT-C-----------A-GGTCACATAAacaggggtcatacc
gi|15 : ttgagatattattgCCAAT----AG-AT-TTAGAGCGT------TCCTCAT---TA----ATTCAAACACTT-A-TAAATTATGTGT-
gi|2 : a-GAGGG---T---T-----ATT--AT-ACA---GTCAAC----TG-AT-TTAGGACAT------TTC---T---TTCTTTATTCAAATA-TT-AGTAAATTGTGTGT-TG-ACATACATATTCAGTATTTAT--GACAAATTGTTGTTCACATA---AGTCA--AGTCATTGATTAA-T---TTACTCAT-TAT--TGTA-----------------ACAAA---AC-A--T-GTAAAC------GTCATTGCTTTT---AACTATAATTGTTTT-CCTA---CTGATAAC-----------AA-AAAACGTCATTTCATCTGTTTTCTTTCACTTTTTTCTGTAACTTATCATTATAGAACTAg
gi|3 : ATGCCATCTAGTCTGTCTTAATTGG-CCATCCACGG-GAATTC-AG--TG-AAAA-GGTCACATAAGGCA-GGAGG---T---CG--TTATA---T-ATA---ACCAA-----TGTAT-TGAGGAC-------------------------TTTAAATA-TTTA-TAAATTGTGTGT-TT-ACCTAA-----CAGTATTTATATGGCATGTT-TTGTTCACATGT--AAT-ATTA---------------------------------TATTT---------T-AACATGAA--TATGA--TCATAAAT------GT-ATTG-TTTCTTGAACTAAATTTGTTTT-CATA---gttac
gi|4 : aaatatctaataaaaatgcattttcaAGTCTAAATTGTCTTGAATGA-TCTTTCAAAG-GAAT-CAGG--AG-AAAA-AGTCACATGGGACA-GGGAG---T---TA--T-AAT--AT-ACA---GCCAAC----AT-AT-TAATGGCATGAATCCTCT---T---TG----ATTTAAACA-TTTA-TACATTGTGCATGT--GCATAAA----CAGCATTTATATGACATGTT-CGGTTCACATACCTGGT-ATTAATCATTG----------------AT-TAT--GGTA-TTTGTTACTTTT-AACACAGAC-T
gi|5 : GACA-AGGGG---TCACTG--C-ATG------CA---GCCAAC----TT-AT-TTAGAATGT------TTC---TCTTTG----ATTCAAACA-TT-----GAT-----------------------AG-----ATATTACAT-------TTAA---AC--AGT-ATT------CGA---A-----GT-C--AT-TAT--GGTATTT-GATAC-TTTTAAAACAGA--TAC-AAAT-GTAGACCTAAATGTCATTGCTTTC---AACTACAATTTTTTT-CAGA---C-----GC------------A-CGAATGTCTTTCCATTTGTTTTATTTCACTTTAGTATGTAACT
gi|6 : ATAATCTTGACTGTCT-AAGTGA-CCTTCCAAGG-GAAA-A-AG--AT-AA-------ATATAGGATA-GGGAGTCAT---TA--T-ATA--A--ACA----TCAAC----TG-AT-CTAGGACAT------TCC---T---C------TTC-------------GATT-------------TAAA----CAAAATTTATATGGTATGTT-TAATTCACATAC--AGT-ATTAGTCAACAAT-AA-CTGTGTCC--AT-TAT--AATA-TTTGTTAC-TTT-GA
gi|7 : AAGA-GAGT-C-TG--CT-AAAAAGGTCACATAAGACA-GGATA---T---T-----ATA--A--ACA---ACCAACAGATTT-AT-TTAGGACAT------TCC---TCATTG----ATTCAAACA-TT-AATAAATTGTGTGT------ATAAA----CAGTATTTATATAACTTATT-TTGT----ATAC--AGa
gi|8 : TACAGTCTAGACTGTTTAAAGTGA-CTGTGT-AGG-GAAT-C-AG--GT-AAAACGGTCACATAAGACA-GGTTG---C---TA--T-ATA--A----A---ACCAAC----TG-AT-TTAGGgaatat
gi|9 : catttaataaattattatgtaattgatgtaaatgATACAGTCTAGACTGTCTTAAGTGA-CATTCCAGGGTG----C-GG--G---GGA-GGTCACATAAGACA-GGCGG---T---TG--T-CAC--AT-ACA---GTAAAG----GG-AT-TAAGGACTTCA----TCA---C---TG----ATTCCAACgttttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TATGGGTTCTGTACCTTCACTGTGTCCATTACAATATTTGTTACTT
Alignments
lowQualScore : 11111111 1 33333333333333333 333333333333333333333333 222 33333 11111 8888888888888888888888888888888888888888888888888888 22 111111 222222 111 1 8888888888888888888888888
lowQualScore : 0 4 2 3 3 66666666 0 3 1 33333333333333333 6666 88888 3 3 000000000000000000000000 3 4 333 0 77777 00000 4 2 5 1 0 77 6 7777777777777777777777777777777777777777777777777777 88 555555 888888 2 2 777 1 0 8888888888888888888888888 88 3 1 1 1 1
lowQualScore : . . . . . ........ . . . ................. .... ..... . . ........................ . . ... . ..... ..... . . . . . .. . .................................................... .. ...... ...... . . ... . . ......................... .. . . . . .
lowQualScore : 3 0 3 6 6 55555555 9 6 2 22222222222222222 7777 11111 3 3 555555555555555555555555 6 0 000 1 66666 88888 1 2 7 6 7 99 7 3333333333333333333333333333333333333333333333333333 00 888888 888888 5 5 555 2 0 5555555555555555555555555 00 7 0 0 0 0
consensus : AGATACAGTCTAGACTGTCTTAAGTGA-CCGTCCAAGG-GAAT-C-GG--NT-AAAA-GGTCACATAAGACA-GGGGGT---TG--T-ATA--AT-ACA---GCCAAC----TG-AT-TTAGGACGT------TCC---T---TG----ATTCA-AACA-TT-A-TAGATTGTGTGT-T--ACATAAA----CAGTATTTATATGACATGTT-TTGTTCACATAC--AGT-ATTAGTCATCGAT--A---A-C-GT---CAT-TATNGTATTTG----TAC-TTT-AACACGGAC-TAC-A--T-GTAAAC------GTCATTGCTTTC---AACTATAATTGTTTT-CATA---CT-ATAAC-----------AA-AAAACGTCGTTCCATCTGTTTTCTTTCACTTTATTNTGTAACTTATCATNATANANCTA
Reference ( family-6367 ) : AGATACAGTCTAGACTGTCTTAAGTGA-CCGTCCAAGG-GAAT-C-GG--NT-AAAA-GGTCACATAAGACA-GGGGGT---TG--T-ATA--AT-ACA---GCCAAC----TG-AT-TTAGGACGT------TCC---T---TG----ATTCA-AACA-TT-A-TAGATTGTGTGT-T--ACATAAA----CAGTATTTATATGACATGTT-TTGTTCACATAC--AGT-ATTAGTCATCGAT--A---A-C-GT---CAT-TATNGTATTTT---GTAC-TTT-AACACGGAC-TAC-A--T-GTAAAC------GTCATTGCTTTC---AACTATAATTGTTTT-CATA---CT-ATAAC-----------AA-AAAACGTCGTTCCATCTGTTTTCTTTCACTTTATTNTGTAACTTATCATNATANANCTA
gi|1 : AAATACAGCCCTGACTGTTTTAAATGA-CTGTCCAAGG-GAAT-C-AG--TT-TAAA-GGTCACATAAGACACGGAGAT---TA--T-ATATTATTATA---GTCAAC----TG-AT-TTAGGACAT------TCT---T---TG----ATTCATAA------G-TAGATTGTGTGTGTCGGCATAAA----CATCATTTATATGACATGTT-TTGATCACATAC--AGT-TTTGGTCATTGAT--A---AGC-ATA--CATGTATCATGTTTTTTGGTAC-TTTAAACATGGACTTAC-A--T-ATAAAT------TTCATTACTTTC---AACTGTAACAGTTTCACATATATTT-ATAATTTTTATCTATGAACAAAATATTGTTCTCTCTGTTTTCTTTCACTTGATTGTGTAAGTTATCATGATATACCTA
gi|10 : CTTGACTGTCTTAAATGA-CCGTCAAAGG-AAAT-C-AG--ATAAAAA-GGTTGCATAAGACA-TGGGAT---TG--T--TAT-AT-ACA---AACAAG----GG-AT-AGAGGATGC------TCCTTAT---TG----ATTCA-AACA-ctaaca
gi|11 : cTAGACTGTCTTAAGTGAACCGTCCAAGG-GAAT-C-GGTTAT-AAAA-GG-CACATAAG-CA-AGCGGA---AGAAC-ATG--GT-ACAATTGACAAT----TG-ATATTAATACAT------T
gi|12 : ATATAGTTTAGACTGTTGTAAGTGA-GCATCCAAGG-GAAC-CAGG--TT-AAAATGGTCACATAAG
gi|13 : tttaatatttttttattattttcaatTTCA-AACA-TTGA-TAGATTGTGTGT-TT-ACACAAA----CAGTGTTTATATGACATATg
gi|14 : tctgtagAGATACAGTTTGGATTGTCTTAAGTGA-CCATCCGAGG-GAAT-C-----------A-GGTCACATAAacaggggtcatacc
gi|15 : ttgagatattattgCCAAT----AG-AT-TTAGAGCGT------TCCTCAT---TA----ATTCA-AACACTT-A-TAAATTATGTGT-
gi|2 : a-GAGGGT---T-----ATT--AT-ACA---GTCAAC----TG-AT-TTAGGACAT------TTC---T---TTCTTTATTCA-AATA-TT-AGTAAATTGTGTGT-TG-ACATACATATTCAGTATTTAT--GACAAATTGTTGTTCACATA---AGTCA--AGTCATTGATTAATTTA-C--T---CAT-TATTGTA-------------------ACAAA---AC-A--T-GTAAAC------GTCATTGCTTTT---AACTATAATTGTTTT-CCTA---CTGATAAC-----------AA-AAAACGTCATTTCATCTGTTTTCTTTCACTTTTTTCTGTAACTTATCATTATAGAACTAg
gi|3 : ATGCCATCTAGTCTGTCTTAATTGG-CCATCCACGG-GAATTC-AG--TG-AAAA-GGTCACATAAGGCA-GGAGGT---CG--TTATA---T-ATA---ACCAA-----TGTAT-TGAGGAC-------------------------TTTA-AATA-TTTA-TAAATTGTGTGT-TT-ACCTAA-----CAGTATTTATATGGCATGTT-TTGTTCACATGT--AAT-ATTA---------------------------------TATT-----------TT-AACATGAA--TATGA--TCATAAAT------GT-ATTG-TTTCTTGAACTAAATTTGTTTT-CATA---gttac
gi|4 : aaatatctaataaaaatgcattttcaAGTCTAAATTGTCTTGAATGA-TCTTTCAAAG-GAAT-CAGG--AG-AAAA-AGTCACATGGGACA-GGGAGT---TA--T-AAT--AT-ACA---GCCAAC----AT-AT-TAATGGCATGAATCCTCT---T---TG----ATTTA-AACA-TTTA-TACATTGTGCATGT--GCATAAA----CAGCATTTATATGACATGTT-CGGTTCACATACCTGGT-ATTAATCATTG------------------AT-TATGGTATTTG---TTACTTTT-AACACAGAC-T
gi|5 : GACA-AGGGGTCACTG--C-ATG------CA---GCCAAC----TT-AT-TTAGAATGT------TTC---TCTTTG----ATTCA-AACA-TT-----GAT-----------------------AG-----ATATTACAT-------TTAA---AC--AGT-ATT------CGA-------A---GT---CAT-TATGGTATTTG---ATAC-TTTTAAAACAGA--TAC-AAAT-GTAGACCTAAATGTCATTGCTTTC---AACTACAATTTTTTT-CAGA---C-----GC-----------AC-GAA-TGTCTTTCCATTTGTTTTATTTCACTTTAGTATGTAACT
gi|6 : ATAATCTTGACTGTCT-AAGTGA-CCTTCCAAGG-GAAA-A-AG--AT-AAA-------TATAGGATA-GGGAGTCATTA--T-ATA--A--ACA----TCAAC----TG-AT-CTAGGACAT------TCC---T---C------TTC--------------GATT-------------TAAA----CAAAATTTATATGGTATGTT-TAATTCACATAC--AGT-ATTAGTCAACAAT--A---A-CTGTGTCCAT-TATAATATTTG---TTAC-TTT-GA
gi|7 : AAGA-GAGT-C-TG--CT-AAAAAGGTCACATAAGACA-GGATAT---T-----ATA--A--ACA---ACCAACAGATTT-AT-TTAGGACAT------TCC---TCATTG----ATTCA-AACA-TT-AATAAATTGTGTGT------ATAAA----CAGTATTTATATAACTTATT-TTGT----ATAC--AGa
gi|8 : TACAGTCTAGACTGTTTAAAGTGA-CTGTGT-AGG-GAAT-C-AG--GT-AAAACGGTCACATAAGACA-GGTTGC---TA--T-ATA--A----A---ACCAAC----TG-AT-TTAGGgaatat
gi|9 : catttaataaattattatgtaattgatgtaaatgATACAGTCTAGACTGTCTTAAGTGA-CATTCCAGGGTG----C-GG--G---GGA-GGTCACATAAGACA-GGCGGT---TG--T-CAC--AT-ACA---GTAAAG----GG-AT-TAAGGACTTCA----TCA---C---TG----ATTCC-AACgttttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TATGGGTTCTGTACCTTCACTGTGTCCATTACAATATTTGTTACTT
Alignments
lowQualScore : 11111111 1 222222222222222222222 333333333333333333333333 222 33333 11111 88888888888888888888888888888888888888888888888888888 22 111111 222222 111 1 9999999999999999999999999
lowQualScore : 0 4 2 3 3 66666666 0 3 1 777777777777777777777 6666 88888 3 3 000000000000000000000000 3 4 333 0 77777 00000 4 2 5 1 0 77 6 77777777777777777777777777777777777777777777777777777 88 555555 888888 2 2 777 1 0 6666666666666666666666666 0 3 1 1 1 1
lowQualScore : . . . . . ........ . . . ..................... .... ..... . . ........................ . . ... . ..... ..... . . . . . .. . ..................................................... .. ...... ...... . . ... . . ......................... . . . . . .
lowQualScore : 3 0 3 6 6 55555555 9 6 2 999999999999999999999 7777 11111 3 3 555555555555555555555555 6 0 000 1 66666 88888 1 2 7 6 7 99 7 88888888888888888888888888888888888888888888888888888 00 888888 888888 5 5 555 2 0 8888888888888888888888888 7 7 0 0 0 0
consensus : AGATACAGTCTAGACTGTCTTAAGTGA-CCGTCCAAGG-GAAT-C-GG--NT-AAAA-GGTCACATAAGACA-GGGGG---T---TG--T-ATA--AT-ACA---GCCAAC----TG-AT-TTAGGACGT------TCC---T---TG----ATTCA-AACA-TT-A-TAGATTGTGTGT-T--ACATAAA----CAGTATTTATATGACATGTT-TTGTTCACATAC--AGT-ATTAGTCATCGAT--A---A-C-GT---CAT-TATNGTATTT----G-TAC-TTT-AACACGGAC-TAC-A--T-GTAAAC------GTCATTGCTTTC---AACTATAATTGTTTT-CATA---CT-ATAAC-----------AA-AAAACGTCGTTCCATCTGTTTTCTTTCACTTTATTNTGTAACTTATCATNATANANCTA
Reference ( family-6367 ) : AGATACAGTCTAGACTGTCTTAAGTGA-CCGTCCAAGG-GAAT-C-GG--NT-AAAA-GGTCACATAAGACA-GGGGG---T---TG--T-ATA--AT-ACA---GCCAAC----TG-AT-TTAGGACGT------TCC---T---TG----ATTCA-AACA-TT-A-TAGATTGTGTGT-T--ACATAAA----CAGTATTTATATGACATGTT-TTGTTCACATAC--AGT-ATTAGTCATCGAT--A---A-C-GT---CAT-TATNGTATTT----G-TAC-TTT-AACACGGAC-TAC-A--T-GTAAAC------GTCATTGCTTTC---AACTATAATTGTTTT-CATA---CT-ATAAC-----------AA-AAAACGTCGTTCCATCTGTTTTCTTTCACTTTATTNTGTAACTTATCATNATANANCTA
gi|1 : AAATACAGCCCTGACTGTTTTAAATGA-CTGTCCAAGG-GAAT-C-AG--TT-TAAA-GGTCACATAAGACACGGAGA---T---TA--T-ATATTATTATA---GTCAAC----TG-AT-TTAGGACAT------TCT---T---TG----ATTCATAA------G-TAGATTGTGTGTGTCGGCATAAA----CATCATTTATATGACATGTT-TTGATCACATAC--AGT-TTTGGTCATTGAT--A---AGC-ATA--CATGTATCATGTTTTTTGG-TAC-TTTAAACATGGACTTAC-A--T-ATAAAT------TTCATTACTTTC---AACTGTAACAGTTTCACATATATTT-ATAATTTTTATCTATGAACAAAATATTGTTCTCTCTGTTTTCTTTCACTTGATTGTGTAAGTTATCATGATATACCTA
gi|10 : CTTGACTGTCTTAAATGA-CCGTCAAAGG-AAAT-C-AG--ATAAAAA-GGTTGCATAAGACA-TGGGA---T---TG--T--TAT-AT-ACA---AACAAG----GG-AT-AGAGGATGC------TCCTTAT---TG----ATTCA-AACA-ctaaca
gi|11 : cTAGACTGTCTTAAGTGAACCGTCCAAGG-GAAT-C-GGTTAT-AAAA-GG-CACATAAG-CA-AGCGG---A---AGAAC-ATG--GT-ACAATTGACAAT----TG-ATATTAATACAT------T
gi|12 : ATATAGTTTAGACTGTTGTAAGTGA-GCATCCAAGG-GAAC-CAGG--TT-AAAATGGTCACATAAG
gi|13 : tttaatatttttttattattttcaatTTCA-AACA-TTGA-TAGATTGTGTGT-TT-ACACAAA----CAGTGTTTATATGACATATg
gi|14 : tctgtagAGATACAGTTTGGATTGTCTTAAGTGA-CCATCCGAGG-GAAT-C-----------A-GGTCACATAAacaggggtcatacc
gi|15 : ttgagatattattgCCAAT----AG-AT-TTAGAGCGT------TCCTCAT---TA----ATTCA-AACACTT-A-TAAATTATGTGT-
gi|2 : a-GAGGG---T---T-----ATT--AT-ACA---GTCAAC----TG-AT-TTAGGACAT------TTC---T---TTCTTTATTCA-AATA-TT-AGTAAATTGTGTGT-TG-ACATACATATTCAGTATTTAT--GACAAATTGTTGTTCACATA---AGTCA--AGTCATTGATTAATTTA-C--T---CAT-TATTGTA--------------------ACAAA---AC-A--T-GTAAAC------GTCATTGCTTTT---AACTATAATTGTTTT-CCTA---CTGATAAC-----------AA-AAAACGTCATTTCATCTGTTTTCTTTCACTTTTTTCTGTAACTTATCATTATAGAACTAg
gi|3 : ATGCCATCTAGTCTGTCTTAATTGG-CCATCCACGG-GAATTC-AG--TG-AAAA-GGTCACATAAGGCA-GGAGG---T---CG--TTATA---T-ATA---ACCAA-----TGTAT-TGAGGAC-------------------------TTTA-AATA-TTTA-TAAATTGTGTGT-TT-ACCTAA-----CAGTATTTATATGGCATGTT-TTGTTCACATGT--AAT-ATTA---------------------------------TATT------------TT-AACATGAA--TATGA--TCATAAAT------GT-ATTG-TTTCTTGAACTAAATTTGTTTT-CATA---gttac
gi|4 : aaatatctaataaaaatgcattttcaAGTCTAAATTGTCTTGAATGA-TCTTTCAAAG-GAAT-CAGG--AG-AAAA-AGTCACATGGGACA-GGGAG---T---TA--T-AAT--AT-ACA---GCCAAC----AT-AT-TAATGGCATGAATCCTCT---T---TG----ATTTA-AACA-TTTA-TACATTGTGCATGT--GCATAAA----CAGCATTTATATGACATGTT-CGGTTCACATACCTGGT-ATTAATCATTG------------------AT-TATGGTATTT----GTTACTTTT-AACACAGAC-T
gi|5 : GACA-AGGGG---TCACTG--C-ATG------CA---GCCAAC----TT-AT-TTAGAATGT------TTC---TCTTTG----ATTCA-AACA-TT-----GAT-----------------------AG-----ATATTACAT-------TTAA---AC--AGT-ATT------CGA-------A---GT---CAT-TATGGTATTT----GATAC-TTTTAAAACAGA--TAC-AAAT-GTAGACCTAAATGTCATTGCTTTC---AACTACAATTTTTTT-CAGA---C-----GC------------A-CGAATGTCTTTCCATTTGTTTTATTTCACTTTAGTATGTAACT
gi|6 : ATAATCTTGACTGTCT-AAGTGA-CCTTCCAAGG-GAAA-A-AG--AT-AA-------ATATAGGATA-GGGAGTCAT---TA--T-ATA--A--ACA----TCAAC----TG-AT-CTAGGACAT------TCC---T---C------TTC--------------GATT-------------TAAA----CAAAATTTATATGGTATGTT-TAATTCACATAC--AGT-ATTAGTCAACAAT--A---A-CTGTGTCCAT-TATAATATTT----GTTAC-TTT-GA
gi|7 : AAGA-GAGT-C-TG--CT-AAAAAGGTCACATAAGACA-GGATA---T---T-----ATA--A--ACA---ACCAACAGATTT-AT-TTAGGACAT------TCC---TCATTG----ATTCA-AACA-TT-AATAAATTGTGTGT------ATAAA----CAGTATTTATATAACTTATT-TTGT----ATAC--AGa
gi|8 : TACAGTCTAGACTGTTTAAAGTGA-CTGTGT-AGG-GAAT-C-AG--GT-AAAACGGTCACATAAGACA-GGTTG---C---TA--T-ATA--A----A---ACCAAC----TG-AT-TTAGGgaatat
gi|9 : catttaataaattattatgtaattgatgtaaatgATACAGTCTAGACTGTCTTAAGTGA-CATTCCAGGGTG----C-GG--G---GGA-GGTCACATAAGACA-GGCGG---T---TG--T-CAC--AT-ACA---GTAAAG----GG-AT-TAAGGACTTCA----TCA---C---TG----ATTCC-AACgttttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TATGGGTTCTGTACCTTCACTGTGTCCATTACAATATTTGTTACTT
Alignments
lowQualScore : 11111111 1 222222222222222222222 333333333333333333333333 222 33333 11111 88888888888888888888888888888888888888888888888888888 22 111111 222222 111 1 9999999999999999999999999
lowQualScore : 0 4 2 3 3 66666666 0 3 1 777777777777777777777 6666 88888 3 3 000000000000000000000000 3 4 333 0 77777 00000 4 2 5 1 0 77 6 77777777777777777777777777777777777777777777777777777 88 555555 888888 2 2 777 1 0 6666666666666666666666666 0 3 1 1 1 1
lowQualScore : . . . . . ........ . . . ..................... .... ..... . . ........................ . . ... . ..... ..... . . . . . .. . ..................................................... .. ...... ...... . . ... . . ......................... . . . . . .
lowQualScore : 3 0 3 6 6 55555555 9 6 2 999999999999999999999 7777 11111 3 3 555555555555555555555555 6 0 000 1 66666 88888 1 2 7 6 7 99 7 88888888888888888888888888888888888888888888888888888 00 888888 888888 5 5 555 2 0 8888888888888888888888888 7 7 0 0 0 0
consensus : AGATACAGTCTAGACTGTCTTAAGTGA-CCGTCCAAGG-GAAT-C-GG--NT-AAAA-GGTCACATAAGACA-GGGGG---T---TG--T-ATA--AT-ACA---GCCAAC----TG-AT-TTAGGACGT------TCC---T---TG----ATTCA-AACA-TT-A-TAGATTGTGTGT-T--ACATAAA----CAGTATTTATATGACATGTT-TTGTTCACATAC--AGT-ATTAGTCATCGAT--A---A-C-GT---CAT-TATNGTATTT----G-TAC-TTT-AACACGGAC-TAC-A--T-GTAAAC------GTCATTGCTTTC---AACTATAATTGTTTT-CATA---CT-ATAAC-----------AA-AAAACGTCGTTCCATCTGTTTTCTTTCACTTTATTNTGTAACTTATCATNATANANCTA
Reference ( family-6367 ) : AGATACAGTCTAGACTGTCTTAAGTGA-CCGTCCAAGG-GAAT-C-GG--NT-AAAA-GGTCACATAAGACA-GGGGG---T---TG--T-ATA--AT-ACA---GCCAAC----TG-AT-TTAGGACGT------TCC---T---TG----ATTCA-AACA-TT-A-TAGATTGTGTGT-T--ACATAAA----CAGTATTTATATGACATGTT-TTGTTCACATAC--AGT-ATTAGTCATCGAT--A---A-C-GT---CAT-TATNGTATTT----G-TAC-TTT-AACACGGAC-TAC-A--T-GTAAAC------GTCATTGCTTTC---AACTATAATTGTTTT-CATA---CT-ATAAC-----------AA-AAAACGTCGTTCCATCTGTTTTCTTTCACTTTATTNTGTAACTTATCATNATANANCTA
gi|1 : AAATACAGCCCTGACTGTTTTAAATGA-CTGTCCAAGG-GAAT-C-AG--TT-TAAA-GGTCACATAAGACACGGAGA---T---TA--T-ATATTATTATA---GTCAAC----TG-AT-TTAGGACAT------TCT---T---TG----ATTCATAA------G-TAGATTGTGTGTGTCGGCATAAA----CATCATTTATATGACATGTT-TTGATCACATAC--AGT-TTTGGTCATTGAT--A---AGC-ATA--CATGTATCATGTTTTTTGG-TAC-TTTAAACATGGACTTAC-A--T-ATAAAT------TTCATTACTTTC---AACTGTAACAGTTTCACATATATTT-ATAATTTTTATCTATGAACAAAATATTGTTCTCTCTGTTTTCTTTCACTTGATTGTGTAAGTTATCATGATATACCTA
gi|10 : CTTGACTGTCTTAAATGA-CCGTCAAAGG-AAAT-C-AG--ATAAAAA-GGTTGCATAAGACA-TGGGA---T---TG--T--TAT-AT-ACA---AACAAG----GG-AT-AGAGGATGC------TCCTTAT---TG----ATTCA-AACA-ctaaca
gi|11 : cTAGACTGTCTTAAGTGAACCGTCCAAGG-GAAT-C-GGTTAT-AAAA-GG-CACATAAG-CA-AGCGG---A---AGAAC-ATG--GT-ACAATTGACAAT----TG-ATATTAATACAT------T
gi|12 : ATATAGTTTAGACTGTTGTAAGTGA-GCATCCAAGG-GAAC-CAGG--TT-AAAATGGTCACATAAG
gi|13 : tttaatatttttttattattttcaatTTCA-AACA-TTGA-TAGATTGTGTGT-TT-ACACAAA----CAGTGTTTATATGACATATg
gi|14 : tctgtagAGATACAGTTTGGATTGTCTTAAGTGA-CCATCCGAGG-GAAT-C-----------A-GGTCACATAAacaggggtcatacc
gi|15 : ttgagatattattgCCAAT----AG-AT-TTAGAGCGT------TCCTCAT---TA----ATTCA-AACACTT-A-TAAATTATGTGT-
gi|2 : a-GAGGG---T---T-----ATT--AT-ACA---GTCAAC----TG-AT-TTAGGACAT------TTC---T---TTCTTTATTCA-AATA-TT-AGTAAATTGTGTGT-TG-ACATACATATTCAGTATTTAT--GACAAATTGTTGTTCACATA---AGTCA--AGTCATTGATTAATTTA-C--T---CAT-TATTGTA--------------------ACAAA---AC-A--T-GTAAAC------GTCATTGCTTTT---AACTATAATTGTTTT-CCTA---CTGATAAC-----------AA-AAAACGTCATTTCATCTGTTTTCTTTCACTTTTTTCTGTAACTTATCATTATAGAACTAg
gi|3 : ATGCCATCTAGTCTGTCTTAATTGG-CCATCCACGG-GAATTC-AG--TG-AAAA-GGTCACATAAGGCA-GGAGG---T---CG--TTATA---T-ATA---ACCAA-----TGTAT-TGAGGAC-------------------------TTTA-AATA-TTTA-TAAATTGTGTGT-TT-ACCTAA-----CAGTATTTATATGGCATGTT-TTGTTCACATGT--AAT-ATTA---------------------------------TATT------------TT-AACATGAA--TATGA--TCATAAAT------GT-ATTG-TTTCTTGAACTAAATTTGTTTT-CATA---gttac
gi|4 : aaatatctaataaaaatgcattttcaAGTCTAAATTGTCTTGAATGA-TCTTTCAAAG-GAAT-CAGG--AG-AAAA-AGTCACATGGGACA-GGGAG---T---TA--T-AAT--AT-ACA---GCCAAC----AT-AT-TAATGGCATGAATCCTCT---T---TG----ATTTA-AACA-TTTA-TACATTGTGCATGT--GCATAAA----CAGCATTTATATGACATGTT-CGGTTCACATACCTGGT-ATTAATCATTG------------------AT-TATGGTATTT----GTTACTTTT-AACACAGAC-T
gi|5 : GACA-AGGGG---TCACTG--C-ATG------CA---GCCAAC----TT-AT-TTAGAATGT------TTC---TCTTTG----ATTCA-AACA-TT-----GAT-----------------------AG-----ATATTACAT-------TTAA---AC--AGT-ATT------CGA-------A---GT---CAT-TATGGTATTT----GATAC-TTTTAAAACAGA--TAC-AAAT-GTAGACCTAAATGTCATTGCTTTC---AACTACAATTTTTTT-CAGA---C-----GC------------A-CGAATGTCTTTCCATTTGTTTTATTTCACTTTAGTATGTAACT
gi|6 : ATAATCTTGACTGTCT-AAGTGA-CCTTCCAAGG-GAAA-A-AG--AT-AA-------ATATAGGATA-GGGAGTCAT---TA--T-ATA--A--ACA----TCAAC----TG-AT-CTAGGACAT------TCC---T---C------TTC--------------GATT-------------TAAA----CAAAATTTATATGGTATGTT-TAATTCACATAC--AGT-ATTAGTCAACAAT--A---A-CTGTGTCCAT-TATAATATTT----GTTAC-TTT-GA
gi|7 : AAGA-GAGT-C-TG--CT-AAAAAGGTCACATAAGACA-GGATA---T---T-----ATA--A--ACA---ACCAACAGATTT-AT-TTAGGACAT------TCC---TCATTG----ATTCA-AACA-TT-AATAAATTGTGTGT------ATAAA----CAGTATTTATATAACTTATT-TTGT----ATAC--AGa
gi|8 : TACAGTCTAGACTGTTTAAAGTGA-CTGTGT-AGG-GAAT-C-AG--GT-AAAACGGTCACATAAGACA-GGTTG---C---TA--T-ATA--A----A---ACCAAC----TG-AT-TTAGGgaatat
gi|9 : catttaataaattattatgtaattgatgtaaatgATACAGTCTAGACTGTCTTAAGTGA-CATTCCAGGGTG----C-GG--G---GGA-GGTCACATAAGACA-GGCGG---T---TG--T-CAC--AT-ACA---GTAAAG----GG-AT-TAAGGACTTCA----TCA---C---TG----ATTCC-AACgttttt
blockSeqs : A G T T GGTTAT T . G AAGAACATGGT ATTG CAGAT T A ATGAATCCTCTTTG . C GA TTA ATATT T A G T CT C AGTCAACAATAACTGTGTCCATTATAATATTTGTTACTTT C GATC CTAAAT C C TTG T . CTGATAACAA A C T G A
blockSeqs : . G . . AGATA A . C TCATTATATAA A G . . ATTTCTTTCTTT . . AG TGA A T A . T . . AGTCATTGATTAATTTACTCATTATTGTA . AAAT . C C . A . CGCA T A
blockSeqs : . A . . AGGTT C . G TCACTGCATG G T . . GCTCCTTATTG . . TA TTA A T G . G . . AATCATTGATTATGGTATTTGTTACTTTT . AT . . . . C .
blockSeqs : . A . . AGGAG . . A TTGTTATAT A T . . GTTCCTCATTA . . TA GTG A C G . A . . CGAAGTCATTATGGTATTTGATACTTTT .
blockSeqs : . A . . AGTG . . G TCGTTATAT G C . . GTTTCTCTTTG . . AA . A A G . T . . ATATTTT
blockSeqs : . T . . AGAT . . G TTATAATAT G C . . ATTCCTCATTG . . A . . T A . . .
blockSeqs : . T . . TGCT . . G TTGTCACAT A C . . TTCATCACTG . . . . . . .
blockSeqs : . G . . AGGT . . A CTATATAA A C . . ATTCCTC . . .
blockSeqs : . T . . GGG . . T TTATTAT G C . . . . .
blockSeqs : . . . . . C TTATAA . G . . .
blockSeqs : . . .
blockSeqCons : TTATNATAT************ GTTCCTCTTG************** NA* TTA** **
originalCons : AGATACAGTCTAGACTGTCTTAAGTGA-CCGTCCAAGG-GAAT-C-GG--NT-AAAA-GGTCACATAAGACA-GGGGG---T---TG--T-ATA--AT-ACA---GCCAAC----TG-AT-TTAGGACGT------TCC---T---TG----ATTCA-AACA-TT-A-TAGATTGTGTGT-T--ACATAAA----CAGTATTTATATGACATGTT-TTGTTCACATAC--AGT-ATTAGTCATCGAT--A---A-C-GT---CAT-TATNGTATTT----G-TAC-TTT-AACACGGAC-TAC-A--T-GTAAAC------GTCATTGCTTTC---AACTATAATTGTTTT-CATA---CT-ATAAC-----------AA-AAAACGTCGTTCCATCTGTTTTCTTTCACTTTATTNTGTAACTTATCATNATANANCTA
finalCons : AGATACAGTCTAGACTGTCTTAAGTGA-CCGTCCAAGG-GAAT-C-GG--NT-AAAA-GGTCACATAAGACA-GGGGGTTATNATAT------------ACA---GCCAAC----TG-AT-TTAGGACGTTCCTCTTG--------------ATTCA-AACA-TTNA-TAGATTGTGTGTTTA--CATAAA----CAGTATTTATATGACATGTT-TTGTTCACATAC--AGT-ATTAGTCATCGAT--A---A-C-GT---CAT-TATNGTATTT----G-TAC-TTT-AACACGGA--TAC-A--T-GTAAAC------GTCATTGCTTTC---AACTATAATTGTTTT-CATA---CT-ATAAC-----------AA-AAAACGTCGTTCCATCTGTTTTCTTTCACTTTATTNTGTAACTTATCATNATANANCTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TATGGGTTCTGTACCTTCACTGTGTCCATTACAATATTTGTTACTT
Alignments
lowQualScore : 11111111 1 1111111 22222 11111 88888888888888888888888888888888888888888888888888888 11 111111 222222 111 1 9999999999999999999999999
lowQualScore : 0 4 2 3 3 66666666 0 3 1 8 8888 55 1 88888888 0 99999 7777777 3 666 5 22222 33333 0 2 5 1 0 77 6 77777777777777777777777777777777777777777777777777777 77 11 555555 888888 2 2 777 1 0 6666666666666666666666666 0 3 1 1 1 1
lowQualScore : . . . . . ........ . . . . .... .. . ........ . ..... ....... . ... . ..... ..... . . . . . .. . ..................................................... .. .. ...... ...... . . ... . . ......................... . . . . . .
lowQualScore : 3 0 3 6 6 55555555 9 6 2 8 5555 55 4 88888888 1 99999 5555555 4 666 4 88888 11111 1 2 7 6 7 99 7 88888888888888888888888888888888888888888888888888888 88 00 888888 888888 5 5 555 2 0 8888888888888888888888888 7 7 0 0 0 0
consensus : AGATACAGTCTAGACTGTCTTAAGTGA-CCGTCCAAGG-GAAT-C-GG--NT-AAAA-GGTCACATAAGACA-GGGGGTTATTATA----TA--CAGCCAAC----TG-ATTTAGGACGT---TCCT--CATT-GATTCAAACATTNA-TAAATTGTGTGTTT--ACATAAA----CAGTATTTATATGACATGTT-TTGTTCACATAC--AGT-ATTAGTCATCGAT--A---A-C-GT---CAT-TATNGTATTT----G-TAC-TTT-AACACGGA--TAC-A--T-GTAAAC------GTCATTGCTTTC---AACTATAATTGTTTT-CATA---CT-ATAAC-----------AA-AAAACGTCGTTCCATCTGTTTTCTTTCACTTTATTNTGTAACTTATCATNATANANCTA
Reference ( family-6367 ) : AGATACAGTCTAGACTGTCTTAAGTGA-CCGTCCAAGG-GAAT-C-GG--NT-AAAA-GGTCACATAAGACA-GGGGGTTATNATA----TA--CAGCCAAC----TG-ATTTAGGACGT---TCCT--C-TT-GATTCAAACATTNA-TAGATTGTGTGTTT--ACATAAA----CAGTATTTATATGACATGTT-TTGTTCACATAC--AGT-ATTAGTCATCGAT--A---A-C-GT---CAT-TATNGTATTT----G-TAC-TTT-AACACGGA--TAC-A--T-GTAAAC------GTCATTGCTTTC---AACTATAATTGTTTT-CATA---CT-ATAAC-----------AA-AAAACGTCGTTCCATCTGTTTTCTTTCACTTTATTNTGTAACTTATCATNATANANCTA
gi|1 : AAATACAGCCCTGACTGTTTTAAATGA-CTGTCCAAGG-GAAT-C-AG--TT-TAAA-GGTCACATAAGACACGGAGATTAT-ATATTATTA--TAGTCAAC----TG-ATTTAGGACAT---TC----T-TT-GATTCA-----TAAGTAGATTGTGTGTGTCGGCATAAA----CATCATTTATATGACATGTT-TTGATCACATAC--AGT-TTTGGTCATTGAT--A---AGC-ATA--CATGTATCATGTTTTTTGG-TAC-TTTAAACATGGACTTAC-A--T-ATAAAT------TTCATTACTTTC---AACTGTAACAGTTTCACATATATTT-ATAATTTTTATCTATGAACAAAATATTGTTCTCTCTGTTTTCTTTCACTTGATTGTGTAAGTTATCATGATATACCTA
gi|10 : CTTGACTGTCTTAAATGA-CCGTCAAAGG-AAAT-C-AG--ATAAAAA-GGTTGCATAAGACA-TGGGATTGTTATA----TA--CAAACAAG----GG-ATAGAGGATGC---TCCT--TATT-GATTCAAACActaaca
gi|11 : cTAGACTGTCTTAAGTGAACCGTCCAAGG-GAAT-C-GGTTAT-AAAA-GG-CACATAAG-CA-AGCGG
gi|12 : ATATAGTTTAGACTGTTGTAAGTGA-GCATCCAAGG-GAAC-CAGG--TT-AAAATGGTCACATAAGaagaacatggtacaattgacaattgatattaatacatt
gi|13 : tttaatatttttttattattttcaatTTCAAACATTGA-TAGATTGTGTGTTT--ACACAAA----CAGTGTTTATATGACATATg
gi|14 : tctgtagAGATACAGTTTGGATTGTCTTAAGTGA-CCATCCGAGG-GAAT-C-----------A-GGTCACATAAacaggggtcatacc
gi|15 : ttgagatattattgCCAAT----AG-ATTTAGAGCGT---TCCT--CATT-AATTCAAACACTTA-TAAATTATGTGT
gi|2 : a-GAGGGTTAT--TA----TA--CAGTCAAC----TG-ATTTAGGACAT---TTCTTTC-TT-TATTCAAATATTAG-TAAATTGTGTGTTG--ACATACATATTCAGTATTTAT--GACAAATTGTTGTTCACATA---AGTCA--AGTCATTGATTAATTTA-C--T---CAT-TATTGTA------------------ACA---A--AAC-A--T-GTAAAC------GTCATTGCTTTT---AACTATAATTGTTTT-CCTA---CTGATAAC-----------AA-AAAACGTCATTTCATCTGTTTTCTTTCACTTTTTTCTGTAACTTATCATTATAGAACTAg
gi|3 : ATGCCATCTAGTCTGTCTTAATTGG-CCATCCACGG-GAATTC-AG--TG-AAAA-GGTCACATAAGGCA-GGAGGTCGTTATA----TA--TAACCAA-----TGTATTGAGGAC------------------TTTAAATATTTA-TAAATTGTGTGTTT--ACCTAA-----CAGTATTTATATGGCATGTT-TTGTTCACATGT--AAT-ATTA---------------------------------TATT------------TT-AACATGAA--TATGA--TCATAAAT------GT-ATTG-TTTCTTGAACTAAATTTGTTTT-CATA---gttac
gi|4 : aaatatctaataaaaatgcattttcaAGTCTAAATTGTCTTGAATGA-TCTTTCAAAG-GAAT-CAGG--AG-AAAA-AGTCACATGGGACA-GGGAGTTATAATA----TA--CAGCCAAC----AT-ATTAATGGCATGAATCCT--C-TTTGATTTAAACATTTA-TACATTGTGCATGT--GCATAAA----CAGCATTTATATGACATGTT-CGGTTCACATACCTGGT-ATTAATCATTG------------------AT-TATGGTATTT----GTTACTTTT-AACACAGA--
gi|5 : GACA-AGGGGTCACTGCA----TG--CAGCCAAC----TT-ATTTAGAATGT---TTCT--C-TTTGATTCAAAC---------ATTG-----------ATAGA-------TATT------ACAT-------TTAA---AC--AGT-ATT------CGA-------A---GT---CAT-TATGGTATTT----GATAC-TTTTAAAACAGA--TAC-AAAT-GTAGACCTAAATGTCATTGCTTTC---AACTACAATTTTTTT-CAGA---C-----GC------------A-CGAATGTCTTTCCATTTGTTTTATTTCACTTTAGTATGTAACTct
gi|6 : ATAATCTTGACTGTCT-AAGTGA-CCTTCCAAGG-GAAA-A-AG--AT-AAA-------TATAGGATA-GGGAGTCATTATA----TAAACA-TCAAC----TG-ATCTAGGACAT---TCCT--C-TTCGATTTAAACA-------------------------AAA---------TTTATATGGTATGTT-TAATTCACATAC--AGT-ATTAGTCAACAAT--A---A-CTGTGTCCAT-TATAATATTT----GTTAC-TTT-GA
gi|7 : AAGA-GAGT-C-TG--CT-AAAAAGGTCACATAAGACA-GGA---TATTATA----AA--CAACCAACAGATTT-ATTTAGGACAT---TCCT--CATT-GATTCAAACATTAA-TAAATTGTGTGT------ATAAA----CAGTATTTATATAACTTATT-TTGT----ATAC--AGa
gi|8 : TACAGTCTAGACTGTTTAAAGTGA-CTGTGT-AGG-GAAT-C-AG--GT-AAAACGGTCACATAAGACA----GGTTGCTATA----TA--AAACCAAC----TG-ATTTAGGgaatat
gi|9 : catttaataaattattatgtaattgatgtaaatgATACAGTCTAGACTGTCTTAAGTGA-CATTCCAGGGTG----C-GG--G---GGA-GGTCACATAAGACA-GGCGGTTGTCACA----TA--CAGTAAAG----GG-ATTAAGGAC-T---TCAT--CACT-GATTCCAACgttttt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TATGGGTTCTGTACCTTCACTGTGTCCATTACAATATTTGTTACTT