lowQualScore : 333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111 111111111
lowQualScore : 22 666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 4 1 1 55 1 1 333 11 1 4444444444 11 2 1 1 1 22 6666666 4444444 111 11 777777777777777 1 1 1 3333 111111 1 11 1 1 1 1 1 1 555555555 1 222 1 1
lowQualScore : 33 777777777777777777777777777777777777777777777777777777777777777777777777777777777 5 0 5 7 55 6 6 6 5 77 5 888 00 7 6 8888 6 4 2 9999999999 00 4 4 0 5 7 3 6 4 5 6 11 4 4 3 3 4 6 6 4 3333333 5555555 0 4 666 55 444444444444444 5 6 0 55 8 5 4 3 1 2 4 4 0 0000 7 6 666666 5 22 7 6 7 7 5 5 6 5 222222222 6 6 5 333 5 5
lowQualScore : .. ................................................................................. . . . . .. . . . . .. . ... .. . . .... . . . .......... .. . . . . . . . . . . .. . . . . . . . . ....... ....... . . ... .. ............... . . . .. . . . . . . . . . .... . . ...... . .. . . . . . . . . ......... . . . ... . .
lowQualScore : 00 000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0 00 0 0 0 0 00 0 555 00 0 0 0000 0 0 5 5555555555 00 0 0 0 0 0 0 0 0 0 0 55 0 0 0 0 0 0 0 0 5555555 5555555 7 0 333 77 777777777777777 0 7 3 33 7 9 6 6 2 2 5 6 5 8888 5 0 000000 0 00 0 0 0 0 0 0 0 0 000000000 0 0 0 000 0 0
consensus : GCACTTTTAATATAT----ATTTAATTT---TATAGTA-----AATATAAGATAATGTA-TAA--TAAAACAACATCTATAT--------------ACCAAATCGAAAATGAATATCATTTCCTTCTGGTGTGTCCCGTATATAGACACTTGAGGANNACCTACTTTAAAAGGCTACNACTGTAGTTGGCCAACGATAANCNNATTTCAATCACTGATATCCACANANTCAACAAAAGNATTTGTTAACGANCANAGCAAAATTCATATACANTGCAGAAAAGAATAACAATTAATTAACCGATCANTATAAACATACATCNTAGAACTAATGTGTATAACAACAGNCAGTNANANTATCTACATGCAANAGCGACTGACATTCTNTAAACATGTACTAACAACTAAGAATATGTTAAANCGATTCTTATCATATATGCGTATATAA-TATATGTAAT-TCACATAGATANAATATATATTGCTTCTCTGTTAAACGATATATTTCATGT-TATTCACCTATCTTTAAATTCAATGTGTGTAGGCTATAAACATTGTATTTATGTTTTATGCTGAATAAAATATTCAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAAGAT----T-TGTGAATTCATAACATTTCTTAGCAATGATATTAGGCTATAGGCTAGCTGAGCATATAAGTTGCCTTTAAACATATAGCATGCTGCCAATGCA--TG-----TGTGCTGTGAGTGATTAATAACCCACAGA
Reference ( gi|1 ) : GCACTTTTTGTATATCGTCACATAATTTAGCTATAGAAACAGGAATATACGATAACATACCAAGGGAAACCAGAATTTGTATAAAATGTCAAATGAACAAAATCG-AAATGAATATAATATCCTTCTG--GTGTCCTGCACATAGACACTTAACGAATACATACTTTAAAA-A-TACTGCTGAAGTTGACCAACGATAAACAAATTCCAATCACTGATATCCACAAACTC-A---AAGT-TTTGTTAACAAATATAGCAAAATTCATATACAATGCAGAAAAGA-TAAAAATTAATTTACTGATCATTATGAACATACATCATACAACTAATGTGCACAACAACAAACAGTTAAAATATCTACATGTAATAACGATTGGCATTCTATA------CACTAACAACTATGAATGTGTTAAATTGGCGCTTTTCATATCT--ATATAT-----TATGTCAT-TCACATAGATAAAATATATATTGCTTCCCTGTTAAATGATCTATTTCATAT-TATTCACCTATCTTTAAATTCAATGTGTGCAGGCTATTAACATTGTATTGATGTTTTATGCTGGAC-AAATATCCAAGATTGGTTTGTTTAATTATTTGAATAATTAGCATAATTTTATGCCGTCAAGGGCTAACAGACGCTCAGTTAACCCAAGTACTCTTTCCTGGGATCTTGGAAGGTTAACCAGTACTCAAGCAGACCCGTCTCTGCATGTAACTGATAACTTTCCCAATTGAATCAGTGGCGAGAGACGAATGACAATGAAATATAATGTTTTATATTAGTTATCACAGAGGTTTTGGTCGGCCGGGGATTTGAACTCACGATAACCTCTTGATTGATAGTCAGATGCATTACCGACTAAGCAAACTGGCCTCTGCACGCACAAGATATGATATGTTAATTCATAATGTTTCTAAGCAATGGTATAAGGCTATTGGCTAGCTGAGCATATAAGTTGCCTTTAAACATAGAGAATACTGCAAATGCAATTAACACTTGTGCTGCGAATCATTCAAAAGCCAAAGACT
gi|2 : GCACTTTTAATATAT----ATTTAATTT---TATAGTA-----AATATAAGATAATGTA-TAA--TAAAACAACATCTATAT--------------ACCAAATCGAAAATGAATATCATTTCCTTCTGGTGTGTCCCGTATATAGACACTTGAGGAATACCTACTTTAAAAGA-TACTACTGTAGTTGGCCAACGATAAACAAATTTCAATCACTGATATCCACAAACTCAA---AAGC-TTTGTTAACAAACATAGCAAAATTCATATACAATGCAGAAAAGA-TAACAATTAATTAACCGATCATTATAAACATACATCATAAAACTAATGTATAT-ACAACAGTCAGTAAAAATATCTACATATAAAAGCGACTGACATTCTTTA------TACTAA-------GAACATGTTAATGTGACTCTTATCATATATGCATATATAAATATATGTAAT-TCACATAGAT--AATATATATTGCTTCTCTGTTAAATTATCTATTTCATGT-TATTCATCAATCT-----TTCAATGTGTGTAGGCTATAAACATTGTATTGATGTTTTATGCTGAATAAAATATTC
gi|3 : ACTTAAGGACAATCTACTTTAAAA-GCTACAACTGTAGTTGGCCAACGATAACTTCATTTCAATCATTGATATCTACATAATC-ACAAAAGAATTTGTTAACGATCAAAGCAAAATTCATATACATTGCAGAAAAAAATAACAATTAATTAACTGATCAGTATAAACATACATCTTAGAACTAATGTGTATAACAACAAACAGTTACACTATCTACATGCAATAACGACTGACATTCTATAAACATGTACTAACAACTAAGAATATGTTAAACTGATTCTTATTATATATGCATATATAATTATGTGTAAT-TCACATGGATAAAGTTTATATTTCTTCTCTGTTCAATGATAAAATTCATGT-TATTCACCTATCTTTAAATGCAATGTGTGTAGGCTATAAACATTGTATTTATGTTTTATGCTGAAT-ACATgtattcgta
gi|4 : taTGTATTAAATCTTTGCTTT-CAAATTT--GTTTAA-----CATATAATATTGTATTGTTATTATATATATGACTTCTCTGTTAAATTATATATTTCATGC-TGTTCACCTTTCTTTATATTCATTGTGTGTAGACTACACACATTGTATTTATGATTTATTCTGAATAAAATATTCtattcgtattcg
gi|17 : atacaataggaagaaaaaatactatatttagcaaagtatgccctaaccaaacaacagaacaataatatatacagactcaaaaaaatctaatctgatattttctttttAT-TCACATAGATACCACGTATATTGCTTCTCTGTCAAATGATCTATgtattcgtatg
gi|9 : ta-TCCCATAGATAGAATATATATGGCTTCTCTGTTAAATGATATATTTCATGT-TATTCGCCTATCTTTAAATTCAATGTGTGCAGGCTATAAACATTGT----ATGTTTTATGCTGAAT-A
gi|6 : -TTACATGGATAAAG-ATATATTTCATCACTAATAAACGATATG---CATGT--ATT------TCTTTAAATTCAATATGTGTAGACTATAAACATTGTATCTATGTTTGATGCTG----AAATA---AAAATTttgtttttgtattcg
gi|10 : acatgtatatttatgtaaacggaagtgataagATAACATATATATTGATTCACAGTTAAACGATATATTTCATGT-TATTCATCTATCTTTAAATTCAATATGTGTTAGATATAAACATTGTATATATGTTTTATGCTGAAT-AAAAATcatattcat
gi|11 : TATATATTGTTTCTCTGTTAAACGATATATTTCATGT-AATTCATCTACCTTTAAATTCAATGTGTGTAGGTTATAAACAATGTATTTATGTATCATGCTGAGTAAAATATttcgtattcgtat
gi|14 : ATATATTGCTTTGCTGTTAAACGATATATTTCATGT-GATTTGCCTATC---A--------GTGTGTATGCTATT----T--------TGTTTTATGCTGAACAAAATATTCttttattca
gi|12 : CTTCTCTGTTAAATGATCTATTTCATGT-TATTCACCCATCTTT-----CAATGTGTGTAGGCTATAAACATTGTATTGATGTTTTATGCTGAATAAAATATTCgtattcgtat
gi|13 : AATGATCTATTTCATGT-TATTCACCTATCTTTAAATTCAATGTGTGTAGGCTATAAACATTGTATTTATGTTTTATGCTGAAT-AAAgttttcgtattcg
gi|5 : TTTCTTATGTTTTCA----TCTTTAAATTAAATGTGTGTATGATATAAACATTGTATTTATATTTTATGCTGAATGAAATATTCacattcatatttgtat
gi|7 : ttatatatgctattacaatattgcaaaataattaaacacaatatatagtctaaatcaataatagaaatcatagtCACAAGAT----T-TGTGAATTCATAACATTTCTTAGCAATGATATTAGGCTATAGGCTAGCTGAGCATATAAGTTGCCTTTAAACATATAGCATGCTGCCAATGCA--TG-----TGTGCTGTGAGTGATTAATAACCCACAGAgtatacgtatt
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): CCGTTAAATGGTCAGCTATGTCATGCATGAATACACTTAACGTCTTTATTGTTGAGCTGGTGTGGATAAACGTATAAAAATGCATTAAAAAATGCATAAAAAACTCCACTATATAACTGGTGGTACCGTTATGG
Unaligned ( gi|15 ): TCATATATGTTTGTAATTAATATACACAGAGTATTTTATGTTTAATGCTAATGAAACATTCGCATTCGCA
Unaligned ( gi|16 ): TGTGTATATAATACATTGTATTTATAGTTTATGCTAAATAAAATATTAGTTTTTGTTT
Alignments
lowQualScore : 11111111111111
lowQualScore : 4444 333 55555 3333333 11111111111111 1 11 44 444 22 2 55555555 1 111 1111 1 555555 666666666
lowQualScore : 4 2222 4 555 4 00000 3 1111111 3 2 77777777777777 2 5 2 4 88 0 22 33 1 1 22 1 1 555 44 0 1 1 1 3 0 1 1 3 7 11 1 1 1 0 1 0 1 33333333 33 1 3 9 1 4 444 8 2222 3 0 6 0 555 0 3 33 44 44 0 1 3 3 0 6 333333 2 4 4 4 3 2 2 666666666 2 3 4 2 2
lowQualScore : . .... . ... . ..... . ....... . . .............. . . . . .. . .. .. . . .. . . ... .. . . . . . . . . . . .. . . . . . . . ........ .. . . . . . ... . .... . . . . ... . . .. .. .. . . . . . . ...... . . . . . . . ......... . . . . .
lowQualScore : 0 5555 0 000 0 00000 0 0000000 0 5 55555555555555 5 5 5 0 00 7 00 77 0 0 00 0 0 333 77 7 0 0 0 7 7 0 0 7 3 77 0 0 0 7 0 7 0 33333333 00 2 0 8 0 6 000 0 6666 6 2 9 5 888 8 7 33 22 66 2 2 1 1 4 0 555555 5 0 0 0 0 5 5 555555555 5 0 0 5 5
consensus : GCACTTTTNGTATATCGTCACNTAATTTAGCTATAGNAACAGGAATATANGATAACGTACCAAGGNAAANCAGNATCTGTATAAAATGTCAAATGAACNAAATCGAAAATGAATATNATNTCCTTCTGGTGTGTCCCGCACATAGACACTTAAGGAATACCTACTTTAAAAG--TACTACTGTAGTTGGCCAACGATAAACAAATTTCAATCACTGATATCCACAAACTC--CAAAAGN-TTTGTTAACGAACATAGCAAAATTCATATACAATGCAGAAAAG-ATAACAATTAATTAACCGATCATTATAAACATACATCATANAACTAATGTGTATAACAACAAACAGTTAAAATATCTACATGTAATAACGACTGACATTCTATA---AT-CACTAACAACTAAGAATGTGTTAAATTGACGCTTATCATATATGCATA---T-AT-AA-TATATGTAATTCACATAGATANAATATATATTGCT---TCTCTGTTAAACGAT-ATA--TTTC--ATGTTATTCACCTATCTTTAAATTCAATGTGTGTAGGCTATAA-ACATTGTATTTATGTTTTATGCTG-AATAAAATATTCAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAAGATATGATATGTNAATTCATAACGTTTCTNAGCAATGGTATNAGGCTATNGGCTAGCTGAGCATATAAGTTGCCTTTAAACATANAGNATGCTGCNAATGCAATTGACACTTGTGCTGCGAGTNATTNANAANCCANAGA
Reference ( family-6352 ) : GCACTTTTAATATAT----ATTTAATTT---TATAGTA-----AATATAAGATAATGTA-TAA--TAAAACAACATCTATAT--------------ACCAAATCGAAAATGAATATCATTTCCTTCTGGTGTGTCCCGTATATAGACACTTGAGGANNACCTACTTTAAAAGGCTACNACTGTAGTTGGCCAACGATAANCNNATTTCAATCACTGATATCCACANANTCAACAAAAGNATTTGTTAACGANCANAGCAAAATTCATATACANTGCAGAAAAGAATAACAATTAATTAACCGATCANTATAAACATACATCNTAGAACTAATGTGTATAACAACAGNCAGTNANANTATCTACATGCAANAGCGACTGACATTCTNTAAACATGTACTAACAACTAAGAATATGTTAAANCGATTCTTATCATATATGCGTA---T-AT-AA-TATATGTAATTCACATAGATANAATATATATTGCT---TCTCTGTTAAACGAT-ATA--TTTC--ATGTTATTCACCTATCTTTAAATTCAATGTGTGTAGGCTATAA-ACATTGTATTTATGTTTTATGCTG-AATAAAATATTCAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAAGAT----T-TGTGAATTCATAACATTTCTTAGCAATGATATTAGGCTATAGGCTAGCTGAGCATATAAGTTGCCTTTAAACATATAGCATGCTGCCAATGCA--TG-----TGTGCTGTGAGTGATTAATAACCCACAGA
gi|1 : GCACTTTTTGTATATCGTCACATAATTTAGCTATAGAAACAGGAATATACGATAACATACCAAGGGAAACCAGAATTTGTATAAAATGTCAAATGAACAAAATCG-AAATGAATATAATATCCTTCTG--GTGTCCTGCACATAGACACTTAACGAATACATACTTTAAAAA--TACTGCTGAAGTTGACCAACGATAAACAAATTCCAATCACTGATATCCACAAACTC----AAAGT-TTTGTTAACAAATATAGCAAAATTCATATACAATGCAGAAAAG-ATAAAAATTAATTTACTGATCATTATGAACATACATCATACAACTAATGTGCACAACAACAAACAGTTAAAATATCTACATGTAATAACGATTGGCATTCTATA------CACTAACAACTATGAATGTGTTAAATTGGCGCTTTTCATATCT--ATA---T-AT------TATGTCATTCACATAGATAAAATATATATTGCT---TCCCTGTTAAATGAT-CTA--TTTC--ATATTATTCACCTATCTTTAAATTCAATGTGTGCAGGCTATTA-ACATTGTATTGATGTTTTATGCTG-GAC-AAATATCCAAGATT
gi|1 : CACAAGATATGATATGTTAATTCATAATGTTTCTAAGCAATGGTATAAGGCTATTGGCTAGCTGAGCATATAAGTTGCCTTTAAACATAGAGAATACTGCAAATGCAATTAACACTTGTGCTGCGAATCATTCAAAAGCCAAAGAggtttgtttaattatttgaataattagcataattttatgccgtcaagggctaacagacgctcagttaacccaagtactctttcctgggatcttggaaggttaaccagtactcaagcagacccgtctctgcatgtaactgataactttcccaattgaatcagtggcgagagacgaatgacaatgaaatataatgttttatattagttatcacagaggttttggtcggccggggatttgaactcacgataacctcttgattgatagtcagatgcattaccgactaagcaaactggcctctgcacgcacaagatatgatatgttaattcataatgtttctaagcaatggtataaggctattggctagctgagcatataagttgcctttaaacatagagaatactgcaaatgcaattaacacttgtgctgcgaatcattcaaaagccaaagact
gi|10 : gcactttttgtatatcgtcacataatttagctatagaaacaggaatatacgataacataccaagggaaaccagaatttgtataaaatgtcaaatgaacaaaatcgaaatgaatataatatccttctggtgtcctgcacatagacacttaacgaatacatactttaaaaatactgctgaagttgaccaacgataaacaaattccaatcactgatatccacaaactcaaagttttgttaacaaatatagcaaaattcatatacaatgcagaaaagataaaaattaatttactgatcattatgaacatacatcatacaactaatgtgcacaacaacaaacagttaaaatatctacatgtaataacgattggcattctatacactaacaactatgaatgtgttaaattggcgcttttcatatctatatattatgtcattcacatagataaaatatatattgcttccctgttaaatgatctatttcatattattcacctatctttaaattcaatgtgtgcaggctattaacattgtattgatgttttatgctggacaaatatccaagattggtttgtttaattatttgaataattagcataattttatgccgtcaagggctaacagacgctcagttaacccaagtactctttcctgggatcttggaaggttaaccagtactcaagcagacccgtctctgcatgtaactgataactttcccaattgaatcagtggcgagagacgaatgacaatgaaatataatgttttatattagttatcacagaggttttggtcggccggggatttgaactcacgataacctcttgattgatagtcagatgcattaccgactaagcaaactggcctctgcacgATAACATATATATTGAT---TCACAGTTAAACGAT-ATA--TTTC--ATGTTATTCATCTATCTTTAAATTCAATATGTGTTAGATATAA-ACATTGTATATATGTTTTATGCTG-AATAAAA-ATTct
gi|11 : TATATATTGTT---TCTCTGTTAAACGAT-ATA--TTTC--ATGTAATTCATCTACCTTTAAATTCAATGTGTGTAGGTTATAA-ACAATGTATTTATGTATCATGCTG-AGTAAAATATTtcgtattcgtat
gi|12 : CT---TCTCTGTTAAATGAT-CTA--TTTC--ATGTTATTCACCCATCTTT-----CAATGTGTGTAGGCTATAA-ACATTGTATTGATGTTTTATGCTG-AATAAAATATTCtttattca
gi|13 : AATGAT-CTA--TTTC--ATGTTATTCACCTATCTTTAAATTCAATGTGTGTAGGCTATAA-ACATTGTATTTATGTTTTATGCTG-AATAAAACATTCAgttttcgtattcg
gi|14 : ATATATTGCT---TTGCTGTTAAACGAT-ATA--TTTC--ATGTGATTTGCCTATC---A--------GTGTGTATGCTAT------TT-------TGTTTTATGCTG-AACAAAATATTCtatttgtat
gi|16 : TGTGTA---TATAATACATTGTATTTATAGTTTATGCTA-AATAAAATATTgtattcgtat
gi|17 : TAATTCACATAGATACCACGTATATTGCT---TCTCTGTCAAATGAT-CTA--Tagtttttgttt
gi|2 : GCACTTTTAATATAT----ATTTAATTT---TATAGTA-----AATATAAGATAATGTA-TAA--TAAAACAACATCTATAT--------------ACCAAATCGAAAATGAATATCATTTCCTTCTGGTGTGTCCCGTATATAGACACTTGAGGAATACCTACTTTAAAAGA-TACTACTGTAGTTGGCCAACGATAAACAAATTTCAATCACTGATATCCACAAACT---CAAAAGC-TTTGTTAACAAACATAGCAAAATTCATATACAATGCAGAAAAG-ATAACAATTAATTAACCGATCATTATAAACATACATCATAAAACTAATGTATAT-ACAACAGTCAGTAAAAATATCTACATATAAAAGCGACTGACATTCTTT----AT---------ACTAAGAACATGTTAATGTGACTCTTATCATATATGCATA---T-ATAAA-TATATGTAATTCACATAGAT--AATATATATTGCT---TCTCTGTTAAATTAT-CTA--TTTC--ATGTTATTCATCAATCT-----TTCAATGTGTGTAGGCTATAA-ACATTGTATTGATGTTTTATGCTG-AATAAAATATTC
gi|3 : ACTTAAGGACAATCTACTTTAAAAG-CTACAACTGTAGTTGGCCAACGATAACTTCATTTCAATCATTGATATCTACATAATCA-CAAAAGAATTTGTTAACGATCAAAGCAAAATTCATATACATTGCAGAAAAAAATAACAATTAATTAACTGATCAGTATAAACATACATCTTAGAACTAATGTGTATAACAACAAACAGTTACACTATCTACATGCAATAACGACTGACATTCTATAAACATGTACTAACAACTAAGAATATGTTAAACTGATTCTTATTATATATGCATA---T-AT-AATTATGTGTAATTCACATGGATAAAGTTTATATTTCT---TCTCTGTTCAATGAT-AAA--ATTC--ATGTTATTCACCTATCTTTAAATGCAATGTGTGTAGGCTATAA-ACATTGTATTTATGTTTTATGCTG-AATACATTATTCgtattcgta
gi|4 : taTGTATTAAATCTTTGCTT-TCAAATTTGTTTAACAT-AT-AA-TAT-TGTA-TT------GTTATTATATATATGACT---TCTCTGTTAAATTAT-ATA--TTTC--ATGCTGTTCACCTTTCTTTATATTCATTGTGTGTAGACTACAC-ACATTGTATTTATGATTTATTCTG-AATAAAATATTCgtattcg
gi|5 : atacaataggaagaaaaaatactatatttagcaaagtatgccctaaccaaacaacagaacaataatatatacagactcaaaaaaatctaatctgatattttctttttTTATATATGC-TA---TTAC-AA-TAT-TGCAAAATAATTAAACACAATATATAGT-CTAAATCAATAATAGA-AATCATAGTTTTCTTATGTT-TTCA----TCTTTAAATTAAATGTGTGTATGATATAA-ACATTGTATTTATATTTTATGCTG-AATGAAATATTCgtattcgtatg
gi|6 : TAAGTTACATGGATA-AAGATATATTTCA---TCACTAATAAACGAT-ATG-----C--ATGT-ATT------TCTTTAAATTCAATATGTGTAGACTATAA-ACATTGTATCTATGTTTGATGCTGAAATAAAA-ATTCAgtatacgtatt
gi|7 : acatgtatatttatgtaaacggaagtgaCACAAGAT----T-TGTGAATTCATAACATTTCTTAGCAATGATATTAGGCTATAGGCTAGCTGAGCATATAAGTTGCCTTTAAACATATAGCATGCTGCCAATGCA--TG-----TGTGCTGTGAGTGATTAATAACCCACAGAtattcat
gi|9 : TCCCATAGATAGAATATATATGGCT---TCTCTGTTAAATGAT-ATA--TTTC--ATGTTATTCGCCTATCTTTAAATTCAATGTGTGCAGGCTATAA-ACATTG----TATGTTTTATGCTG-AATAat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CCGTTAAATGGTCAGCTATGTCATGCATGAATACACTTAACGTCTTTATTGTTGAGCTGGTGTGGATAAACGTATAAAAATGCATTAAAAAATGCATAAAAAACTCCACTATATAACTGGTGGTACCGTTATGG
Unaligned ( gi|15 ): TCATATATGTTTGTAATTAATATACACAGAGTATTTTATGTTTAATGCTAATGAAACATTCGCATTCGCA
Alignments
lowQualScore : 2222 222 22222 1 111 55555555555555 1 11 2 222 11 1 44444444 222 1 333333 333333333
lowQualScore : 1 3333 1 000 1 66666 1 5 888 1 1 33333333333333 1 5 1 1 88 6 666 44 0 3 0 1 7 7 99999999 0 1 2 9 1 222 0 88 8 3 0 6 0 555 0 3 33 44 44 0 1 3 3 0 000000 1 1 1 1 1 1 1 444444444 1 1 1 1 1
lowQualScore : . .... . ... . ..... . . ... . . .............. . . . . .. . ... .. . . . . . . ........ . . . . . ... . .. . . . . . ... . . .. .. .. . . . . . ...... . . . . . . . ......... . . . . .
lowQualScore : 0 0000 0 555 0 00000 0 0 555 0 0 00000000000000 0 5 0 0 00 7 777 33 7 3 7 0 3 3 00000000 8 2 5 8 0 000 8 88 0 6 2 9 5 888 8 7 33 22 66 2 2 1 1 4 555555 0 0 0 0 0 0 0 000000000 0 0 0 0 0
consensus : GCACTTTTNGTATATCGTCACNTAATTTAGCTATAGNAACAGGAATATANGATAACGTACCAAGGNAAANCAGNATCTGTATAAAATGTCAAATGAACNAAATCGAAAATGAATATNATNTCCTTCTGGTGTGTCCCGCACATAGACACTTAAGGAATACCTACTTTAAAAG-TACTACTGTAGTTGGCCAACGATAAACAAATTTCAATCACTGATATCCACAAACTC-CAAAAGN-TTTGTTAACGAACATAGCAAAATTCATATACAATGCAGAAAAGA-TAACAATTAATTAACCGATCATTATAAACATACATCATANAACTAATGTGTATAACAACAAACAGTTAAAATATCTACATGTAATAACGACTGACATTCTATAA-CA----CTAACAACTAAGAATGTGTTAAATTGACGCTTATCATATATGCT--ATATAT-AAT-ATATGTAATTCACATAGATANAATATATATTGCT---TCTCTGTTAAACGAT-ATA--TTTC--ATGTTATTCACCTATCTTTAAATTCAATGTGTGTAGGCTATAA-ACATTGTATTTATGTTTTATGCTG-AATAAAATATTCAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAAGATATGATATGTNAATTCATAACGTTTCTNAGCAATGGTATNAGGCTATNGGCTAGCTGAGCATATAAGTTGCCTTTAAACATANAGNATGCTGCNAATGCAATTGACACTTGTGCTGCGAGTNATTNANAANCCANAGA
Reference ( family-6352 ) : GCACTTTTNGTATATCGTCACNTAATTTAGCTATAGNAACAGGAATATANGATAACGTACCAAGGNAAANCAGNATCTGTATAAAATGTCAAATGAACNAAATCGAAAATGAATATNATNTCCTTCTGGTGTGTCCCGCACATAGACACTTAAGGAATACCTACTTTAAAAG-TACTACTGTAGTTGGCCAACGATAAACAAATTTCAATCACTGATATCCACAAACTC-CAAAAGN-TTTGTTAACGAACATAGCAAAATTCATATACAATGCAGAAAAGA-TAACAATTAATTAACCGATCATTATAAACATACATCATANAACTAATGTGTATAACAACAAACAGTTAAAATATCTACATGTAATAACGACTGACATTCTATAATCA----CTAACAACTAAGAATGTGTTAAATTGACGCTTATCATATATGC---ATATAT-AAT-ATATGTAATTCACATAGATANAATATATATTGCT---TCTCTGTTAAACGAT-ATA--TTTC--ATGTTATTCACCTATCTTTAAATTCAATGTGTGTAGGCTATAA-ACATTGTATTTATGTTTTATGCTG-AATAAAATATTCAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAAGATATGATATGTNAATTCATAACGTTTCTNAGCAATGGTATNAGGCTATNGGCTAGCTGAGCATATAAGTTGCCTTTAAACATANAGNATGCTGCNAATGCAATTGACACTTGTGCTGCGAGTNATTNANAANCCANAGA
gi|1 : GCACTTTTTGTATATCGTCACATAATTTAGCTATAGAAACAGGAATATACGATAACATACCAAGGGAAACCAGAATTTGTATAAAATGTCAAATGAACAAAATCGAAA-TGAATATAATATCCTTCTGGTGT--CCTGCACATAGACACTTAACGAATACATACTTTAAAAA-TACTGCTGAAGTTGACCAACGATAAACAAATTCCAATCACTGATATCCACAAACTC---AAAGT-TTTGTTAACAAATATAGCAAAATTCATATACAATGCAGAAAAGA-TAAAAATTAATTTACTGATCATTATGAACATACATCATACAACTAATGTGCACAACAACAAACAGTTAAAATATCTACATGTAATAACGATTGGCATTCTATA--CA----CTAACAACTATGAATGTGTTAAATTGGCGCTTTTCATATCT-----ATATAT------TATGTCATTCACATAGATAAAATATATATTGCT---TCCCTGTTAAATGAT-CTA--TTTC--ATATTATTCACCTATCTTTAAATTCAATGTGTGCAGGCTATTA-ACATTGTATTGATGTTTTATGCTG-GAC-AAATATCCAAGATT
gi|1 : CACAAGATATGATATGTTAATTCATAATGTTTCTAAGCAATGGTATAAGGCTATTGGCTAGCTGAGCATATAAGTTGCCTTTAAACATAGAGAATACTGCAAATGCAATTAACACTTGTGCTGCGAATCATTCAAAAGCCAAAGAggtttgtttaattatttgaataattagcataattttatgccgtcaagggctaacagacgctcagttaacccaagtactctttcctgggatcttggaaggttaaccagtactcaagcagacccgtctctgcatgtaactgataactttcccaattgaatcagtggcgagagacgaatgacaatgaaatataatgttttatattagttatcacagaggttttggtcggccggggatttgaactcacgataacctcttgattgatagtcagatgcattaccgactaagcaaactggcctctgcacgcacaagatatgatatgttaattcataatgtttctaagcaatggtataaggctattggctagctgagcatataagttgcctttaaacatagagaatactgcaaatgcaattaacacttgtgctgcgaatcattcaaaagccaaagact
gi|10 : gcactttttgtatatcgtcacataatttagctatagaaacaggaatatacgataacataccaagggaaaccagaatttgtataaaatgtcaaatgaacaaaatcgaaatgaatataatatccttctggtgtcctgcacatagacacttaacgaatacatactttaaaaatactgctgaagttgaccaacgataaacaaattccaatcactgatatccacaaactcaaagttttgttaacaaatatagcaaaattcatatacaatgcagaaaagataaaaattaatttactgatcattatgaacatacatcatacaactaatgtgcacaacaacaaacagttaaaatatctacatgtaataacgattggcattctatacactaacaactatgaatgtgttaaattggcgcttttcatatctatatattatgtcattcacatagataaaatatatattgcttccctgttaaatgatctatttcatattattcacctatctttaaattcaatgtgtgcaggctattaacattgtattgatgttttatgctggacaaatatccaagattggtttgtttaattatttgaataattagcataattttatgccgtcaagggctaacagacgctcagttaacccaagtactctttcctgggatcttggaaggttaaccagtactcaagcagacccgtctctgcatgtaactgataactttcccaattgaatcagtggcgagagacgaatgacaatgaaatataatgttttatattagttatcacagaggttttggtcggccggggatttgaactcacgataacctcttgattgatagtcagatgcattaccgactaagcaaactggcctctgcacgATAACATATATATTGAT---TCACAGTTAAACGAT-ATA--TTTC--ATGTTATTCATCTATCTTTAAATTCAATATGTGTTAGATATAA-ACATTGTATATATGTTTTATGCTG-AATAAAA-ATTct
gi|11 : TATATATTGTT---TCTCTGTTAAACGAT-ATA--TTTC--ATGTAATTCATCTACCTTTAAATTCAATGTGTGTAGGTTATAA-ACAATGTATTTATGTATCATGCTG-AGTAAAATATTtcgtattcgtat
gi|12 : CT---TCTCTGTTAAATGAT-CTA--TTTC--ATGTTATTCACCCATCTTT-----CAATGTGTGTAGGCTATAA-ACATTGTATTGATGTTTTATGCTG-AATAAAATATTCtttattca
gi|13 : AATGAT-CTA--TTTC--ATGTTATTCACCTATCTTTAAATTCAATGTGTGTAGGCTATAA-ACATTGTATTTATGTTTTATGCTG-AATAAAACATTCAgttttcgtattcg
gi|14 : ATATATTGCT---TTGCTGTTAAACGAT-ATA--TTTC--ATGTGATTTGCCTATC---A--------GTGTGTATGCTAT------TT-------TGTTTTATGCTG-AACAAAATATTCtatttgtat
gi|16 : TGTGTA---TATAATACATTGTATTTATAGTTTATGCTA-AATAAAATATTgtattcgtat
gi|17 : TAATTCACATAGATACCACGTATATTGCT---TCTCTGTCAAATGAT-CTA--Tagtttttgttt
gi|2 : GCACTTTTAATATAT----ATTTAATTT---TATAGTAA-----ATATAAGATAATGTAT-AA--TAAAACAACATCTATATA--------------CCAAATCGAAAATGAATATCATTTCCTTCTGGTGTGTCCCGTATATAGACACTTGAGGAATACCTACTTTAAAAGATACTACTGTAGTTGGCCAACGATAAACAAATTTCAATCACTGATATCCACAAACT--CAAAAGC-TTTGTTAACAAACATAGCAAAATTCATATACAATGCAGAAAAGA-TAACAATTAATTAACCGATCATTATAAACATACATCATAAAACTAATGTATAT-ACAACAGTCAGTAAAAATATCTACATATAAAAGCGACTGACATTCT-TTAT------------ACTAAGAACATGTTAATGTGACTCTTATCATATATGC---ATATATAAAT-ATATGTAATTCACATAGAT--AATATATATTGCT---TCTCTGTTAAATTAT-CTA--TTTC--ATGTTATTCATCAATCT-----TTCAATGTGTGTAGGCTATAA-ACATTGTATTGATGTTTTATGCTG-AATAAAATATTC
gi|3 : ACTTAAGGACAATCTACTTTAAAAGCTACAACTGTAGTTGGCCAACGATAACTTCATTTCAATCATTGATATCTACATAATCACAAAAGAATTTGTTAACGATCAAAGCAAAATTCATATACATTGCAGAAAAAAATAACAATTAATTAACTGATCAGTATAAACATACATCTTAGAACTAATGTGTATAACAACAAACAGTTACACTATCTACATGCAATAACGACTGACATTCTATAAACATGTACTAACAACTAAGAATATGTTAAACTGATTCTTATTATATATGC---ATATAT-AATTATGTGTAATTCACATGGATAAAGTTTATATTTCT---TCTCTGTTCAATGAT-AAA--ATTC--ATGTTATTCACCTATCTTTAAATGCAATGTGTGTAGGCTATAA-ACATTGTATTTATGTTTTATGCTG-AATACATTATTCgtattcgta
gi|4 : taTGTATTAAATCTTTGCTT-TCAAATTTGTTTAACATAT-AAT-AT-TGTA-TT------GTTATTATATATATGACT---TCTCTGTTAAATTAT-ATA--TTTC--ATGCTGTTCACCTTTCTTTATATTCATTGTGTGTAGACTACAC-ACATTGTATTTATGATTTATTCTG-AATAAAATATTCgtattcg
gi|5 : atacaataggaagaaaaaatactatatttagcaaagtatgccctaaccaaacaacagaacaataatatatacagactcaaaaaaatctaatctgatattttctttttTTATATATGCT--AT-TAC-AAT-AT-TGCAAAATAATTAAACACAATATATAGT-CTAAATCAATAATAGA-AATCATAGTTTTCTTATGTT-TTCA----TCTTTAAATTAAATGTGTGTATGATATAA-ACATTGTATTTATATTTTATGCTG-AATGAAATATTCgtattcgtatg
gi|6 : TAAGTTACATGGATA-AAGATATATTTCA---TCACTAATAAACGAT-ATG-----C--ATGT-ATT------TCTTTAAATTCAATATGTGTAGACTATAA-ACATTGTATCTATGTTTGATGCTGAAATAAAA-ATTCAgtatacgtatt
gi|7 : acatgtatatttatgtaaacggaagtgaCACAAGAT----T-TGTGAATTCATAACATTTCTTAGCAATGATATTAGGCTATAGGCTAGCTGAGCATATAAGTTGCCTTTAAACATATAGCATGCTGCCAATGCA--TG-----TGTGCTGTGAGTGATTAATAACCCACAGAtattcat
gi|9 : TCCCATAGATAGAATATATATGGCT---TCTCTGTTAAATGAT-ATA--TTTC--ATGTTATTCGCCTATCTTTAAATTCAATGTGTGCAGGCTATAA-ACATTG----TATGTTTTATGCTG-AATAat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CCGTTAAATGGTCAGCTATGTCATGCATGAATACACTTAACGTCTTTATTGTTGAGCTGGTGTGGATAAACGTATAAAAATGCATTAAAAAATGCATAAAAAACTCCACTATATAACTGGTGGTACCGTTATGG
Unaligned ( gi|15 ): TCATATATGTTTGTAATTAATATACACAGAGTATTTTATGTTTAATGCTAATGAAACATTCGCATTCGCA
Alignments
lowQualScore : 2222 222 22222 1 111 55555555555555 1 11 2 222 11 1 55555555 222 1111 1 333333 333333333
lowQualScore : 1 3333 1 000 1 66666 1 5 888 1 1 33333333333333 1 5 1 1 88 6 666 44 0 3 0 1 7 11111111 7 0 1 2 9 6 111 0 2222 3 0 6 0 555 0 3 33 44 44 0 1 3 3 0 000000 1 1 1 1 1 1 1 444444444 1 1 1 1 1
lowQualScore : . .... . ... . ..... . . ... . . .............. . . . . .. . ... .. . . . . . ........ . . . . . . ... . .... . . . . ... . . .. .. .. . . . . . ...... . . . . . . . ......... . . . . .
lowQualScore : 0 0000 0 555 0 00000 0 0 555 0 0 00000000000000 0 5 0 0 00 7 777 33 7 3 7 0 3 77777777 3 8 2 5 8 0 666 8 6666 6 2 9 5 888 8 7 33 22 66 2 2 1 1 4 555555 0 0 0 0 0 0 0 000000000 0 0 0 0 0
consensus : GCACTTTTNGTATATCGTCACNTAATTTAGCTATAGNAACAGGAATATANGATAACGTACCAAGGNAAANCAGNATCTGTATAAAATGTCAAATGAACNAAATCGAAAATGAATATNATNTCCTTCTGGTGTGTCCCGCACATAGACACTTAAGGAATACCTACTTTAAAAG-TACTACTGTAGTTGGCCAACGATAAACAAATTTCAATCACTGATATCCACAAACTC-CAAAAGN-TTTGTTAACGAACATAGCAAAATTCATATACAATGCAGAAAAGA-TAACAATTAATTAACCGATCATTATAAACATACATCATANAACTAATGTGTATAACAACAAACAGTTAAAATATCTACATGTAATAACGACTGACATTCTATAA-----CACTAACAACTAAGAATGTGTTAAATTGACGCTTATCATATATGCT--ATATAT-AA-TATATGTAATTCACATAGATANAATATATATTGCT---TCTCTGTTAAACGAT-ATA--TTTC--ATGTTATTCACCTATCTTTAAATTCAATGTGTGTAGGCTATAA-ACATTGTATTTATGTTTTATGCTG-AATAAAATATTCAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAAGATATGATATGTNAATTCATAACGTTTCTNAGCAATGGTATNAGGCTATNGGCTAGCTGAGCATATAAGTTGCCTTTAAACATANAGNATGCTGCNAATGCAATTGACACTTGTGCTGCGAGTNATTNANAANCCANAGA
Reference ( family-6352 ) : GCACTTTTNGTATATCGTCACNTAATTTAGCTATAGNAACAGGAATATANGATAACGTACCAAGGNAAANCAGNATCTGTATAAAATGTCAAATGAACNAAATCGAAAATGAATATNATNTCCTTCTGGTGTGTCCCGCACATAGACACTTAAGGAATACCTACTTTAAAAG-TACTACTGTAGTTGGCCAACGATAAACAAATTTCAATCACTGATATCCACAAACTC-CAAAAGN-TTTGTTAACGAACATAGCAAAATTCATATACAATGCAGAAAAGA-TAACAATTAATTAACCGATCATTATAAACATACATCATANAACTAATGTGTATAACAACAAACAGTTAAAATATCTACATGTAATAACGACTGACATTCTATAA-----CACTAACAACTAAGAATGTGTTAAATTGACGCTTATCATATATGCT--ATATAT-AA-TATATGTAATTCACATAGATANAATATATATTGCT---TCTCTGTTAAACGAT-ATA--TTTC--ATGTTATTCACCTATCTTTAAATTCAATGTGTGTAGGCTATAA-ACATTGTATTTATGTTTTATGCTG-AATAAAATATTCAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAAGATATGATATGTNAATTCATAACGTTTCTNAGCAATGGTATNAGGCTATNGGCTAGCTGAGCATATAAGTTGCCTTTAAACATANAGNATGCTGCNAATGCAATTGACACTTGTGCTGCGAGTNATTNANAANCCANAGA
gi|1 : GCACTTTTTGTATATCGTCACATAATTTAGCTATAGAAACAGGAATATACGATAACATACCAAGGGAAACCAGAATTTGTATAAAATGTCAAATGAACAAAATCGAAA-TGAATATAATATCCTTCTGGTGT--CCTGCACATAGACACTTAACGAATACATACTTTAAAAA-TACTGCTGAAGTTGACCAACGATAAACAAATTCCAATCACTGATATCCACAAACTC---AAAGT-TTTGTTAACAAATATAGCAAAATTCATATACAATGCAGAAAAGA-TAAAAATTAATTTACTGATCATTATGAACATACATCATACAACTAATGTGCACAACAACAAACAGTTAAAATATCTACATGTAATAACGATTGGCATTCTAT-A-----CACTAACAACTATGAATGTGTTAAATTGGCGCTTTTCATAT---CT--ATATAT------TATGTCATTCACATAGATAAAATATATATTGCT---TCCCTGTTAAATGAT-CTA--TTTC--ATATTATTCACCTATCTTTAAATTCAATGTGTGCAGGCTATTA-ACATTGTATTGATGTTTTATGCTG-GAC-AAATATCCAAGATT
gi|1 : CACAAGATATGATATGTTAATTCATAATGTTTCTAAGCAATGGTATAAGGCTATTGGCTAGCTGAGCATATAAGTTGCCTTTAAACATAGAGAATACTGCAAATGCAATTAACACTTGTGCTGCGAATCATTCAAAAGCCAAAGAggtttgtttaattatttgaataattagcataattttatgccgtcaagggctaacagacgctcagttaacccaagtactctttcctgggatcttggaaggttaaccagtactcaagcagacccgtctctgcatgtaactgataactttcccaattgaatcagtggcgagagacgaatgacaatgaaatataatgttttatattagttatcacagaggttttggtcggccggggatttgaactcacgataacctcttgattgatagtcagatgcattaccgactaagcaaactggcctctgcacgcacaagatatgatatgttaattcataatgtttctaagcaatggtataaggctattggctagctgagcatataagttgcctttaaacatagagaatactgcaaatgcaattaacacttgtgctgcgaatcattcaaaagccaaagact
gi|10 : gcactttttgtatatcgtcacataatttagctatagaaacaggaatatacgataacataccaagggaaaccagaatttgtataaaatgtcaaatgaacaaaatcgaaatgaatataatatccttctggtgtcctgcacatagacacttaacgaatacatactttaaaaatactgctgaagttgaccaacgataaacaaattccaatcactgatatccacaaactcaaagttttgttaacaaatatagcaaaattcatatacaatgcagaaaagataaaaattaatttactgatcattatgaacatacatcatacaactaatgtgcacaacaacaaacagttaaaatatctacatgtaataacgattggcattctatacactaacaactatgaatgtgttaaattggcgcttttcatatctatatattatgtcattcacatagataaaatatatattgcttccctgttaaatgatctatttcatattattcacctatctttaaattcaatgtgtgcaggctattaacattgtattgatgttttatgctggacaaatatccaagattggtttgtttaattatttgaataattagcataattttatgccgtcaagggctaacagacgctcagttaacccaagtactctttcctgggatcttggaaggttaaccagtactcaagcagacccgtctctgcatgtaactgataactttcccaattgaatcagtggcgagagacgaatgacaatgaaatataatgttttatattagttatcacagaggttttggtcggccggggatttgaactcacgataacctcttgattgatagtcagatgcattaccgactaagcaaactggcctctgcacgATAACATATATATTGAT---TCACAGTTAAACGAT-ATA--TTTC--ATGTTATTCATCTATCTTTAAATTCAATATGTGTTAGATATAA-ACATTGTATATATGTTTTATGCTG-AATAAAA-ATTct
gi|11 : TATATATTGTT---TCTCTGTTAAACGAT-ATA--TTTC--ATGTAATTCATCTACCTTTAAATTCAATGTGTGTAGGTTATAA-ACAATGTATTTATGTATCATGCTG-AGTAAAATATTtcgtattcgtat
gi|12 : CT---TCTCTGTTAAATGAT-CTA--TTTC--ATGTTATTCACCCATCTTT-----CAATGTGTGTAGGCTATAA-ACATTGTATTGATGTTTTATGCTG-AATAAAATATTCtttattca
gi|13 : AATGAT-CTA--TTTC--ATGTTATTCACCTATCTTTAAATTCAATGTGTGTAGGCTATAA-ACATTGTATTTATGTTTTATGCTG-AATAAAACATTCAgttttcgtattcg
gi|14 : ATATATTGCT---TTGCTGTTAAACGAT-ATA--TTTC--ATGTGATTTGCCTATC---A--------GTGTGTATGCTAT------TT-------TGTTTTATGCTG-AACAAAATATTCtatttgtat
gi|16 : TGTGTA---TATAATACATTGTATTTATAGTTTATGCTA-AATAAAATATTgtattcgtat
gi|17 : TAATTCACATAGATACCACGTATATTGCT---TCTCTGTCAAATGAT-CTA--Tagtttttgttt
gi|2 : GCACTTTTAATATAT----ATTTAATTT---TATAGTAA-----ATATAAGATAATGTAT-AA--TAAAACAACATCTATATA--------------CCAAATCGAAAATGAATATCATTTCCTTCTGGTGTGTCCCGTATATAGACACTTGAGGAATACCTACTTTAAAAGATACTACTGTAGTTGGCCAACGATAAACAAATTTCAATCACTGATATCCACAAACT--CAAAAGC-TTTGTTAACAAACATAGCAAAATTCATATACAATGCAGAAAAGA-TAACAATTAATTAACCGATCATTATAAACATACATCATAAAACTAATGTATAT-ACAACAGTCAGTAAAAATATCTACATATAAAAGCGACTGACATTCTTTA---------T----ACTAAGAACATGTTAATGTGACTCTTATCATATATGC---ATATATAAA-TATATGTAATTCACATAGAT--AATATATATTGCT---TCTCTGTTAAATTAT-CTA--TTTC--ATGTTATTCATCAATCT-----TTCAATGTGTGTAGGCTATAA-ACATTGTATTGATGTTTTATGCTG-AATAAAATATTC
gi|3 : ACTTAAGGACAATCTACTTTAAAAGCTACAACTGTAGTTGGCCAACGATAACTTCATTTCAATCATTGATATCTACATAATCACAAAAGAATTTGTTAACGATCAAAGCAAAATTCATATACATTGCAGAAAAAAATAACAATTAATTAACTGATCAGTATAAACATACATCTTAGAACTAATGTGTATAACAACAAACAGTTACACTATCTACATGCAATAACGACTGACATTCTATAAACATGTACTAACAACTAAGAATATGTTAAACTGATTCTTATTATATATGC---ATATAT-AATTATGTGTAATTCACATGGATAAAGTTTATATTTCT---TCTCTGTTCAATGAT-AAA--ATTC--ATGTTATTCACCTATCTTTAAATGCAATGTGTGTAGGCTATAA-ACATTGTATTTATGTTTTATGCTG-AATACATTATTCgtattcgta
gi|4 : taTGTATTAAATCTTTGCTT-TCAAATTTGTTTAACATAT-AA-TAT-TGTA-TT------GTTATTATATATATGACT---TCTCTGTTAAATTAT-ATA--TTTC--ATGCTGTTCACCTTTCTTTATATTCATTGTGTGTAGACTACAC-ACATTGTATTTATGATTTATTCTG-AATAAAATATTCgtattcg
gi|5 : atacaataggaagaaaaaatactatatttagcaaagtatgccctaaccaaacaacagaacaataatatatacagactcaaaaaaatctaatctgatattttctttttTTATATATGCT--AT-TAC-AA-TAT-TGCAAAATAATTAAACACAATATATAGT-CTAAATCAATAATAGA-AATCATAGTTTTCTTATGTT-TTCA----TCTTTAAATTAAATGTGTGTATGATATAA-ACATTGTATTTATATTTTATGCTG-AATGAAATATTCgtattcgtatg
gi|6 : TAAGTTACATGGATA-AAGATATATTTCA---TCACTAATAAACGAT-ATG-----C--ATGT-ATT------TCTTTAAATTCAATATGTGTAGACTATAA-ACATTGTATCTATGTTTGATGCTGAAATAAAA-ATTCAgtatacgtatt
gi|7 : acatgtatatttatgtaaacggaagtgaCACAAGAT----T-TGTGAATTCATAACATTTCTTAGCAATGATATTAGGCTATAGGCTAGCTGAGCATATAAGTTGCCTTTAAACATATAGCATGCTGCCAATGCA--TG-----TGTGCTGTGAGTGATTAATAACCCACAGAtattcat
gi|9 : TCCCATAGATAGAATATATATGGCT---TCTCTGTTAAATGAT-ATA--TTTC--ATGTTATTCGCCTATCTTTAAATTCAATGTGTGCAGGCTATAA-ACATTG----TATGTTTTATGCTG-AATAat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CCGTTAAATGGTCAGCTATGTCATGCATGAATACACTTAACGTCTTTATTGTTGAGCTGGTGTGGATAAACGTATAAAAATGCATTAAAAAATGCATAAAAAACTCCACTATATAACTGGTGGTACCGTTATGG
Unaligned ( gi|15 ): TCATATATGTTTGTAATTAATATACACAGAGTATTTTATGTTTAATGCTAATGAAACATTCGCATTCGCA
Alignments
lowQualScore : 2222 222 22222 1 111 55555555555555 1 11 2 222 11 1 55555555 222 1111 1 333333 333333333
lowQualScore : 1 3333 1 000 1 66666 1 5 888 1 1 33333333333333 1 5 1 1 88 6 666 44 0 3 0 1 7 11111111 7 0 1 2 9 6 111 0 2222 3 0 6 0 555 0 3 33 44 44 0 1 3 3 0 000000 1 1 1 1 1 1 1 444444444 1 1 1 1 1
lowQualScore : . .... . ... . ..... . . ... . . .............. . . . . .. . ... .. . . . . . ........ . . . . . . ... . .... . . . . ... . . .. .. .. . . . . . ...... . . . . . . . ......... . . . . .
lowQualScore : 0 0000 0 555 0 00000 0 0 555 0 0 00000000000000 0 5 0 0 00 7 777 33 7 3 7 0 3 77777777 3 8 2 5 8 0 666 8 6666 6 2 9 5 888 8 7 33 22 66 2 2 1 1 4 555555 0 0 0 0 0 0 0 000000000 0 0 0 0 0
consensus : GCACTTTTNGTATATCGTCACNTAATTTAGCTATAGNAACAGGAATATANGATAACGTACCAAGGNAAANCAGNATCTGTATAAAATGTCAAATGAACNAAATCGAAAATGAATATNATNTCCTTCTGGTGTGTCCCGCACATAGACACTTAAGGAATACCTACTTTAAAAG-TACTACTGTAGTTGGCCAACGATAAACAAATTTCAATCACTGATATCCACAAACTC-CAAAAGN-TTTGTTAACGAACATAGCAAAATTCATATACAATGCAGAAAAGA-TAACAATTAATTAACCGATCATTATAAACATACATCATANAACTAATGTGTATAACAACAAACAGTTAAAATATCTACATGTAATAACGACTGACATTCTATAA-----CACTAACAACTAAGAATGTGTTAAATTGACGCTTATCATATATGCT--ATATAT-AA-TATATGTAATTCACATAGATANAATATATATTGCT---TCTCTGTTAAACGAT-ATA--TTTC--ATGTTATTCACCTATCTTTAAATTCAATGTGTGTAGGCTATAA-ACATTGTATTTATGTTTTATGCTG-AATAAAATATTCAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAAGATATGATATGTNAATTCATAACGTTTCTNAGCAATGGTATNAGGCTATNGGCTAGCTGAGCATATAAGTTGCCTTTAAACATANAGNATGCTGCNAATGCAATTGACACTTGTGCTGCGAGTNATTNANAANCCANAGA
Reference ( family-6352 ) : GCACTTTTNGTATATCGTCACNTAATTTAGCTATAGNAACAGGAATATANGATAACGTACCAAGGNAAANCAGNATCTGTATAAAATGTCAAATGAACNAAATCGAAAATGAATATNATNTCCTTCTGGTGTGTCCCGCACATAGACACTTAAGGAATACCTACTTTAAAAG-TACTACTGTAGTTGGCCAACGATAAACAAATTTCAATCACTGATATCCACAAACTC-CAAAAGN-TTTGTTAACGAACATAGCAAAATTCATATACAATGCAGAAAAGA-TAACAATTAATTAACCGATCATTATAAACATACATCATANAACTAATGTGTATAACAACAAACAGTTAAAATATCTACATGTAATAACGACTGACATTCTATAA-----CACTAACAACTAAGAATGTGTTAAATTGACGCTTATCATATATGCT--ATATAT-AA-TATATGTAATTCACATAGATANAATATATATTGCT---TCTCTGTTAAACGAT-ATA--TTTC--ATGTTATTCACCTATCTTTAAATTCAATGTGTGTAGGCTATAA-ACATTGTATTTATGTTTTATGCTG-AATAAAATATTCAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAAGATATGATATGTNAATTCATAACGTTTCTNAGCAATGGTATNAGGCTATNGGCTAGCTGAGCATATAAGTTGCCTTTAAACATANAGNATGCTGCNAATGCAATTGACACTTGTGCTGCGAGTNATTNANAANCCANAGA
gi|1 : GCACTTTTTGTATATCGTCACATAATTTAGCTATAGAAACAGGAATATACGATAACATACCAAGGGAAACCAGAATTTGTATAAAATGTCAAATGAACAAAATCGAAA-TGAATATAATATCCTTCTGGTGT--CCTGCACATAGACACTTAACGAATACATACTTTAAAAA-TACTGCTGAAGTTGACCAACGATAAACAAATTCCAATCACTGATATCCACAAACTC---AAAGT-TTTGTTAACAAATATAGCAAAATTCATATACAATGCAGAAAAGA-TAAAAATTAATTTACTGATCATTATGAACATACATCATACAACTAATGTGCACAACAACAAACAGTTAAAATATCTACATGTAATAACGATTGGCATTCTAT-A-----CACTAACAACTATGAATGTGTTAAATTGGCGCTTTTCATAT---CT--ATATAT------TATGTCATTCACATAGATAAAATATATATTGCT---TCCCTGTTAAATGAT-CTA--TTTC--ATATTATTCACCTATCTTTAAATTCAATGTGTGCAGGCTATTA-ACATTGTATTGATGTTTTATGCTG-GAC-AAATATCCAAGATT
gi|1 : CACAAGATATGATATGTTAATTCATAATGTTTCTAAGCAATGGTATAAGGCTATTGGCTAGCTGAGCATATAAGTTGCCTTTAAACATAGAGAATACTGCAAATGCAATTAACACTTGTGCTGCGAATCATTCAAAAGCCAAAGAggtttgtttaattatttgaataattagcataattttatgccgtcaagggctaacagacgctcagttaacccaagtactctttcctgggatcttggaaggttaaccagtactcaagcagacccgtctctgcatgtaactgataactttcccaattgaatcagtggcgagagacgaatgacaatgaaatataatgttttatattagttatcacagaggttttggtcggccggggatttgaactcacgataacctcttgattgatagtcagatgcattaccgactaagcaaactggcctctgcacgcacaagatatgatatgttaattcataatgtttctaagcaatggtataaggctattggctagctgagcatataagttgcctttaaacatagagaatactgcaaatgcaattaacacttgtgctgcgaatcattcaaaagccaaagact
gi|10 : gcactttttgtatatcgtcacataatttagctatagaaacaggaatatacgataacataccaagggaaaccagaatttgtataaaatgtcaaatgaacaaaatcgaaatgaatataatatccttctggtgtcctgcacatagacacttaacgaatacatactttaaaaatactgctgaagttgaccaacgataaacaaattccaatcactgatatccacaaactcaaagttttgttaacaaatatagcaaaattcatatacaatgcagaaaagataaaaattaatttactgatcattatgaacatacatcatacaactaatgtgcacaacaacaaacagttaaaatatctacatgtaataacgattggcattctatacactaacaactatgaatgtgttaaattggcgcttttcatatctatatattatgtcattcacatagataaaatatatattgcttccctgttaaatgatctatttcatattattcacctatctttaaattcaatgtgtgcaggctattaacattgtattgatgttttatgctggacaaatatccaagattggtttgtttaattatttgaataattagcataattttatgccgtcaagggctaacagacgctcagttaacccaagtactctttcctgggatcttggaaggttaaccagtactcaagcagacccgtctctgcatgtaactgataactttcccaattgaatcagtggcgagagacgaatgacaatgaaatataatgttttatattagttatcacagaggttttggtcggccggggatttgaactcacgataacctcttgattgatagtcagatgcattaccgactaagcaaactggcctctgcacgATAACATATATATTGAT---TCACAGTTAAACGAT-ATA--TTTC--ATGTTATTCATCTATCTTTAAATTCAATATGTGTTAGATATAA-ACATTGTATATATGTTTTATGCTG-AATAAAA-ATTct
gi|11 : TATATATTGTT---TCTCTGTTAAACGAT-ATA--TTTC--ATGTAATTCATCTACCTTTAAATTCAATGTGTGTAGGTTATAA-ACAATGTATTTATGTATCATGCTG-AGTAAAATATTtcgtattcgtat
gi|12 : CT---TCTCTGTTAAATGAT-CTA--TTTC--ATGTTATTCACCCATCTTT-----CAATGTGTGTAGGCTATAA-ACATTGTATTGATGTTTTATGCTG-AATAAAATATTCtttattca
gi|13 : AATGAT-CTA--TTTC--ATGTTATTCACCTATCTTTAAATTCAATGTGTGTAGGCTATAA-ACATTGTATTTATGTTTTATGCTG-AATAAAACATTCAgttttcgtattcg
gi|14 : ATATATTGCT---TTGCTGTTAAACGAT-ATA--TTTC--ATGTGATTTGCCTATC---A--------GTGTGTATGCTAT------TT-------TGTTTTATGCTG-AACAAAATATTCtatttgtat
gi|16 : TGTGTA---TATAATACATTGTATTTATAGTTTATGCTA-AATAAAATATTgtattcgtat
gi|17 : TAATTCACATAGATACCACGTATATTGCT---TCTCTGTCAAATGAT-CTA--Tagtttttgttt
gi|2 : GCACTTTTAATATAT----ATTTAATTT---TATAGTAA-----ATATAAGATAATGTAT-AA--TAAAACAACATCTATATA--------------CCAAATCGAAAATGAATATCATTTCCTTCTGGTGTGTCCCGTATATAGACACTTGAGGAATACCTACTTTAAAAGATACTACTGTAGTTGGCCAACGATAAACAAATTTCAATCACTGATATCCACAAACT--CAAAAGC-TTTGTTAACAAACATAGCAAAATTCATATACAATGCAGAAAAGA-TAACAATTAATTAACCGATCATTATAAACATACATCATAAAACTAATGTATAT-ACAACAGTCAGTAAAAATATCTACATATAAAAGCGACTGACATTCTTTA---------T----ACTAAGAACATGTTAATGTGACTCTTATCATATATGC---ATATATAAA-TATATGTAATTCACATAGAT--AATATATATTGCT---TCTCTGTTAAATTAT-CTA--TTTC--ATGTTATTCATCAATCT-----TTCAATGTGTGTAGGCTATAA-ACATTGTATTGATGTTTTATGCTG-AATAAAATATTC
gi|3 : ACTTAAGGACAATCTACTTTAAAAGCTACAACTGTAGTTGGCCAACGATAACTTCATTTCAATCATTGATATCTACATAATCACAAAAGAATTTGTTAACGATCAAAGCAAAATTCATATACATTGCAGAAAAAAATAACAATTAATTAACTGATCAGTATAAACATACATCTTAGAACTAATGTGTATAACAACAAACAGTTACACTATCTACATGCAATAACGACTGACATTCTATAAACATGTACTAACAACTAAGAATATGTTAAACTGATTCTTATTATATATGC---ATATAT-AATTATGTGTAATTCACATGGATAAAGTTTATATTTCT---TCTCTGTTCAATGAT-AAA--ATTC--ATGTTATTCACCTATCTTTAAATGCAATGTGTGTAGGCTATAA-ACATTGTATTTATGTTTTATGCTG-AATACATTATTCgtattcgta
gi|4 : taTGTATTAAATCTTTGCTT-TCAAATTTGTTTAACATAT-AA-TAT-TGTA-TT------GTTATTATATATATGACT---TCTCTGTTAAATTAT-ATA--TTTC--ATGCTGTTCACCTTTCTTTATATTCATTGTGTGTAGACTACAC-ACATTGTATTTATGATTTATTCTG-AATAAAATATTCgtattcg
gi|5 : atacaataggaagaaaaaatactatatttagcaaagtatgccctaaccaaacaacagaacaataatatatacagactcaaaaaaatctaatctgatattttctttttTTATATATGCT--AT-TAC-AA-TAT-TGCAAAATAATTAAACACAATATATAGT-CTAAATCAATAATAGA-AATCATAGTTTTCTTATGTT-TTCA----TCTTTAAATTAAATGTGTGTATGATATAA-ACATTGTATTTATATTTTATGCTG-AATGAAATATTCgtattcgtatg
gi|6 : TAAGTTACATGGATA-AAGATATATTTCA---TCACTAATAAACGAT-ATG-----C--ATGT-ATT------TCTTTAAATTCAATATGTGTAGACTATAA-ACATTGTATCTATGTTTGATGCTGAAATAAAA-ATTCAgtatacgtatt
gi|7 : acatgtatatttatgtaaacggaagtgaCACAAGAT----T-TGTGAATTCATAACATTTCTTAGCAATGATATTAGGCTATAGGCTAGCTGAGCATATAAGTTGCCTTTAAACATATAGCATGCTGCCAATGCA--TG-----TGTGCTGTGAGTGATTAATAACCCACAGAtattcat
gi|9 : TCCCATAGATAGAATATATATGGCT---TCTCTGTTAAATGAT-ATA--TTTC--ATGTTATTCGCCTATCTTTAAATTCAATGTGTGCAGGCTATAA-ACATTG----TATGTTTTATGCTG-AATAat
blockSeqs : A . T . T . A . T A C . C A C T GT A CAC AA A A A AAACATGT A A T A A TTA AAA A A AAA C CA GT TT A T A T G T T A T C C TG G A T C C
blockSeqs : C C C . G . A . A T A A T AAT G C . C A . . A . .
blockSeqs : T G . T . AA . A . T A . . A . .
blockSeqs : A . AA . T . T C . . A . .
blockSeqs : C . C C . . T . .
blockSeqs : G . T A . . A . .
blockSeqs : . . T C . . A . .
blockSeqs : . . T C . . A . .
blockSeqs : . T A . . . . .
blockSeqs : . C A . . . . .
blockSeqs : . T A . . . . .
blockSeqs : . A . . .
blockSeqCons : T** AA**
originalCons : GCACTTTTNGTATATCGTCACNTAATTTAGCTATAGNAACAGGAATATANGATAACGTACCAAGGNAAANCAGNATCTGTATAAAATGTCAAATGAACNAAATCGAAAATGAATATNATNTCCTTCTGGTGTGTCCCGCACATAGACACTTAAGGAATACCTACTTTAAAAG-TACTACTGTAGTTGGCCAACGATAAACAAATTTCAATCACTGATATCCACAAACTC-CAAAAGN-TTTGTTAACGAACATAGCAAAATTCATATACAATGCAGAAAAGA-TAACAATTAATTAACCGATCATTATAAACATACATCATANAACTAATGTGTATAACAACAAACAGTTAAAATATCTACATGTAATAACGACTGACATTCTATAA-----CACTAACAACTAAGAATGTGTTAAATTGACGCTTATCATATATGCT--ATATAT-AA-TATATGTAATTCACATAGATANAATATATATTGCT---TCTCTGTTAAACGAT-ATA--TTTC--ATGTTATTCACCTATCTTTAAATTCAATGTGTGTAGGCTATAA-ACATTGTATTTATGTTTTATGCTG-AATAAAATATTCAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAAGATATGATATGTNAATTCATAACGTTTCTNAGCAATGGTATNAGGCTATNGGCTAGCTGAGCATATAAGTTGCCTTTAAACATANAGNATGCTGCNAATGCAATTGACACTTGTGCTGCGAGTNATTNANAANCCANAGA
finalCons : GCACTTTTNGTATATCGTCACNTAATTTAGCTATAGNAACAGGAATATANGATAACGTACCAAGGNAAANCAGNATCTGTATAAAATGTCAAATGAACNAAATCGAAAATGAATATNATNTCCTTCTGGTGTGTCCCGCACATAGACACTTAAGGAATACCTACTTTAAAAG-TACTACTGTAGTTGGCCAACGATAAACAAATTTCAATCACTGATATCCACAAACTC-CAAAAGN-TTTGTTAACGAACATAGCAAAATTCATATACAATGCAGAAAAGA-TAACAATTAATTAACCGATCATTATAAACATACATCATANAACTAATGTGTATAACAACAAACAGTTAAAATATCTACATGTAATAACGACTGACATTCTATAA-----CACTAACAACTAAGAATGTGTTAAATTGACGCTTATCATATATGCT--ATATATAA--TATATGTAATTCACATAGATANAATATATATTGCT---TCTCTGTTAAACGAT-ATA--TTTC--ATGTTATTCACCTATCTTTAAATTCAATGTGTGTAGGCTATAA-ACATTGTATTTATGTTTTATGCTG-AATAAAATATTCAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAAGATATGATATGTNAATTCATAACGTTTCTNAGCAATGGTATNAGGCTATNGGCTAGCTGAGCATATAAGTTGCCTTTAAACATANAGNATGCTGCNAATGCAATTGACACTTGTGCTGCGAGTNATTNANAANCCANAGA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CCGTTAAATGGTCAGCTATGTCATGCATGAATACACTTAACGTCTTTATTGTTGAGCTGGTGTGGATAAACGTATAAAAATGCATTAAAAAATGCATAAAAAACTCCACTATATAACTGGTGGTACCGTTATGG
Unaligned ( gi|15 ): TCATATATGTTTGTAATTAATATACACAGAGTATTTTATGTTTAATGCTAATGAAACATTCGCATTCGCA
Alignments
lowQualScore : 2222 222 22222 1 111 55555555555555 1 11 2 222 11 1 55555555 222 1111 1 333333 333333333
lowQualScore : 1 3333 1 000 1 66666 1 5 888 1 1 33333333333333 1 5 1 1 88 6 666 44 0 3 0 1 7 11111111 7 0 1 2 9 6 111 0 2222 3 0 6 0 555 0 3 33 44 44 0 1 3 3 0 000000 1 1 1 1 1 1 1 444444444 1 1 1 1 1
lowQualScore : . .... . ... . ..... . . ... . . .............. . . . . .. . ... .. . . . . . ........ . . . . . . ... . .... . . . . ... . . .. .. .. . . . . . ...... . . . . . . . ......... . . . . .
lowQualScore : 0 0000 0 555 0 00000 0 0 555 0 0 00000000000000 0 5 0 0 00 7 777 33 7 3 7 0 3 77777777 3 8 2 5 8 0 666 8 6666 6 2 9 5 888 8 7 33 22 66 2 2 1 1 4 555555 0 0 0 0 0 0 0 000000000 0 0 0 0 0
consensus : GCACTTTTNGTATATCGTCACNTAATTTAGCTATAGNAACAGGAATATANGATAACGTACCAAGGNAAANCAGNATCTGTATAAAATGTCAAATGAACNAAATCGAAAATGAATATNATNTCCTTCTGGTGTGTCCCGCACATAGACACTTAAGGAATACCTACTTTAAAAG-TACTACTGTAGTTGGCCAACGATAAACAAATTTCAATCACTGATATCCACAAACTC-CAAAAGN-TTTGTTAACGAACATAGCAAAATTCATATACAATGCAGAAAAGA-TAACAATTAATTAACCGATCATTATAAACATACATCATANAACTAATGTGTATAACAACAAACAGTTAAAATATCTACATGTAATAACGACTGACATTCTATAA-----CACTAACAACTAAGAATGTGTTAAATTGACGCTTATCATATATGCT--ATATAT-AA-TATATGTAATTCACATAGATANAATATATATTGCT---TCTCTGTTAAACGAT-ATA--TTTC--ATGTTATTCACCTATCTTTAAATTCAATGTGTGTAGGCTATAA-ACATTGTATTTATGTTTTATGCTG-AATAAAATATTCAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAAGATATGATATGTNAATTCATAACGTTTCTNAGCAATGGTATNAGGCTATNGGCTAGCTGAGCATATAAGTTGCCTTTAAACATANAGNATGCTGCNAATGCAATTGACACTTGTGCTGCGAGTNATTNANAANCCANAGA
Reference ( family-6352 ) : GCACTTTTNGTATATCGTCACNTAATTTAGCTATAGNAACAGGAATATANGATAACGTACCAAGGNAAANCAGNATCTGTATAAAATGTCAAATGAACNAAATCGAAAATGAATATNATNTCCTTCTGGTGTGTCCCGCACATAGACACTTAAGGAATACCTACTTTAAAAG-TACTACTGTAGTTGGCCAACGATAAACAAATTTCAATCACTGATATCCACAAACTC-CAAAAGN-TTTGTTAACGAACATAGCAAAATTCATATACAATGCAGAAAAGA-TAACAATTAATTAACCGATCATTATAAACATACATCATANAACTAATGTGTATAACAACAAACAGTTAAAATATCTACATGTAATAACGACTGACATTCTATAA-----CACTAACAACTAAGAATGTGTTAAATTGACGCTTATCATATATGCT--ATATAT-AA-TATATGTAATTCACATAGATANAATATATATTGCT---TCTCTGTTAAACGAT-ATA--TTTC--ATGTTATTCACCTATCTTTAAATTCAATGTGTGTAGGCTATAA-ACATTGTATTTATGTTTTATGCTG-AATAAAATATTCAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAAGATATGATATGTNAATTCATAACGTTTCTNAGCAATGGTATNAGGCTATNGGCTAGCTGAGCATATAAGTTGCCTTTAAACATANAGNATGCTGCNAATGCAATTGACACTTGTGCTGCGAGTNATTNANAANCCANAGA
gi|1 : GCACTTTTTGTATATCGTCACATAATTTAGCTATAGAAACAGGAATATACGATAACATACCAAGGGAAACCAGAATTTGTATAAAATGTCAAATGAACAAAATCGAAA-TGAATATAATATCCTTCTGGTGT--CCTGCACATAGACACTTAACGAATACATACTTTAAAAA-TACTGCTGAAGTTGACCAACGATAAACAAATTCCAATCACTGATATCCACAAACTC---AAAGT-TTTGTTAACAAATATAGCAAAATTCATATACAATGCAGAAAAGA-TAAAAATTAATTTACTGATCATTATGAACATACATCATACAACTAATGTGCACAACAACAAACAGTTAAAATATCTACATGTAATAACGATTGGCATTCTAT-A-----CACTAACAACTATGAATGTGTTAAATTGGCGCTTTTCATAT---CT--ATATAT------TATGTCATTCACATAGATAAAATATATATTGCT---TCCCTGTTAAATGAT-CTA--TTTC--ATATTATTCACCTATCTTTAAATTCAATGTGTGCAGGCTATTA-ACATTGTATTGATGTTTTATGCTG-GAC-AAATATCCAAGATT
gi|1 : CACAAGATATGATATGTTAATTCATAATGTTTCTAAGCAATGGTATAAGGCTATTGGCTAGCTGAGCATATAAGTTGCCTTTAAACATAGAGAATACTGCAAATGCAATTAACACTTGTGCTGCGAATCATTCAAAAGCCAAAGAggtttgtttaattatttgaataattagcataattttatgccgtcaagggctaacagacgctcagttaacccaagtactctttcctgggatcttggaaggttaaccagtactcaagcagacccgtctctgcatgtaactgataactttcccaattgaatcagtggcgagagacgaatgacaatgaaatataatgttttatattagttatcacagaggttttggtcggccggggatttgaactcacgataacctcttgattgatagtcagatgcattaccgactaagcaaactggcctctgcacgcacaagatatgatatgttaattcataatgtttctaagcaatggtataaggctattggctagctgagcatataagttgcctttaaacatagagaatactgcaaatgcaattaacacttgtgctgcgaatcattcaaaagccaaagact
gi|10 : gcactttttgtatatcgtcacataatttagctatagaaacaggaatatacgataacataccaagggaaaccagaatttgtataaaatgtcaaatgaacaaaatcgaaatgaatataatatccttctggtgtcctgcacatagacacttaacgaatacatactttaaaaatactgctgaagttgaccaacgataaacaaattccaatcactgatatccacaaactcaaagttttgttaacaaatatagcaaaattcatatacaatgcagaaaagataaaaattaatttactgatcattatgaacatacatcatacaactaatgtgcacaacaacaaacagttaaaatatctacatgtaataacgattggcattctatacactaacaactatgaatgtgttaaattggcgcttttcatatctatatattatgtcattcacatagataaaatatatattgcttccctgttaaatgatctatttcatattattcacctatctttaaattcaatgtgtgcaggctattaacattgtattgatgttttatgctggacaaatatccaagattggtttgtttaattatttgaataattagcataattttatgccgtcaagggctaacagacgctcagttaacccaagtactctttcctgggatcttggaaggttaaccagtactcaagcagacccgtctctgcatgtaactgataactttcccaattgaatcagtggcgagagacgaatgacaatgaaatataatgttttatattagttatcacagaggttttggtcggccggggatttgaactcacgataacctcttgattgatagtcagatgcattaccgactaagcaaactggcctctgcacgATAACATATATATTGAT---TCACAGTTAAACGAT-ATA--TTTC--ATGTTATTCATCTATCTTTAAATTCAATATGTGTTAGATATAA-ACATTGTATATATGTTTTATGCTG-AATAAAA-ATTct
gi|11 : TATATATTGTT---TCTCTGTTAAACGAT-ATA--TTTC--ATGTAATTCATCTACCTTTAAATTCAATGTGTGTAGGTTATAA-ACAATGTATTTATGTATCATGCTG-AGTAAAATATTtcgtattcgtat
gi|12 : CT---TCTCTGTTAAATGAT-CTA--TTTC--ATGTTATTCACCCATCTTT-----CAATGTGTGTAGGCTATAA-ACATTGTATTGATGTTTTATGCTG-AATAAAATATTCtttattca
gi|13 : AATGAT-CTA--TTTC--ATGTTATTCACCTATCTTTAAATTCAATGTGTGTAGGCTATAA-ACATTGTATTTATGTTTTATGCTG-AATAAAACATTCAgttttcgtattcg
gi|14 : ATATATTGCT---TTGCTGTTAAACGAT-ATA--TTTC--ATGTGATTTGCCTATC---A--------GTGTGTATGCTAT------TT-------TGTTTTATGCTG-AACAAAATATTCtatttgtat
gi|16 : TGTGTA---TATAATACATTGTATTTATAGTTTATGCTA-AATAAAATATTgtattcgtat
gi|17 : TAATTCACATAGATACCACGTATATTGCT---TCTCTGTCAAATGAT-CTA--Tagtttttgttt
gi|2 : GCACTTTTAATATAT----ATTTAATTT---TATAGTAA-----ATATAAGATAATGTAT-AA--TAAAACAACATCTATATA--------------CCAAATCGAAAATGAATATCATTTCCTTCTGGTGTGTCCCGTATATAGACACTTGAGGAATACCTACTTTAAAAGATACTACTGTAGTTGGCCAACGATAAACAAATTTCAATCACTGATATCCACAAACT--CAAAAGC-TTTGTTAACAAACATAGCAAAATTCATATACAATGCAGAAAAGA-TAACAATTAATTAACCGATCATTATAAACATACATCATAAAACTAATGTATAT-ACAACAGTCAGTAAAAATATCTACATATAAAAGCGACTGACATTCTTTA---------T----ACTAAGAACATGTTAATGTGACTCTTATCATATATGC---ATATATAAA-TATATGTAATTCACATAGAT--AATATATATTGCT---TCTCTGTTAAATTAT-CTA--TTTC--ATGTTATTCATCAATCT-----TTCAATGTGTGTAGGCTATAA-ACATTGTATTGATGTTTTATGCTG-AATAAAATATTC
gi|3 : ACTTAAGGACAATCTACTTTAAAAGCTACAACTGTAGTTGGCCAACGATAACTTCATTTCAATCATTGATATCTACATAATCACAAAAGAATTTGTTAACGATCAAAGCAAAATTCATATACATTGCAGAAAAAAATAACAATTAATTAACTGATCAGTATAAACATACATCTTAGAACTAATGTGTATAACAACAAACAGTTACACTATCTACATGCAATAACGACTGACATTCTATAAACATGTACTAACAACTAAGAATATGTTAAACTGATTCTTATTATATATGC---ATATAT-AATTATGTGTAATTCACATGGATAAAGTTTATATTTCT---TCTCTGTTCAATGAT-AAA--ATTC--ATGTTATTCACCTATCTTTAAATGCAATGTGTGTAGGCTATAA-ACATTGTATTTATGTTTTATGCTG-AATACATTATTCgtattcgta
gi|4 : taTGTATTAAATCTTTGCTT-TCAAATTTGTTTAACATAT-AA-TAT-TGTA-TT------GTTATTATATATATGACT---TCTCTGTTAAATTAT-ATA--TTTC--ATGCTGTTCACCTTTCTTTATATTCATTGTGTGTAGACTACAC-ACATTGTATTTATGATTTATTCTG-AATAAAATATTCgtattcg
gi|5 : atacaataggaagaaaaaatactatatttagcaaagtatgccctaaccaaacaacagaacaataatatatacagactcaaaaaaatctaatctgatattttctttttTTATATATGCT--AT-TAC-AA-TAT-TGCAAAATAATTAAACACAATATATAGT-CTAAATCAATAATAGA-AATCATAGTTTTCTTATGTT-TTCA----TCTTTAAATTAAATGTGTGTATGATATAA-ACATTGTATTTATATTTTATGCTG-AATGAAATATTCgtattcgtatg
gi|6 : TAAGTTACATGGATA-AAGATATATTTCA---TCACTAATAAACGAT-ATG-----C--ATGT-ATT------TCTTTAAATTCAATATGTGTAGACTATAA-ACATTGTATCTATGTTTGATGCTGAAATAAAA-ATTCAgtatacgtatt
gi|7 : acatgtatatttatgtaaacggaagtgaCACAAGAT----T-TGTGAATTCATAACATTTCTTAGCAATGATATTAGGCTATAGGCTAGCTGAGCATATAAGTTGCCTTTAAACATATAGCATGCTGCCAATGCA--TG-----TGTGCTGTGAGTGATTAATAACCCACAGAtattcat
gi|9 : TCCCATAGATAGAATATATATGGCT---TCTCTGTTAAATGAT-ATA--TTTC--ATGTTATTCGCCTATCTTTAAATTCAATGTGTGCAGGCTATAA-ACATTG----TATGTTTTATGCTG-AATAat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CCGTTAAATGGTCAGCTATGTCATGCATGAATACACTTAACGTCTTTATTGTTGAGCTGGTGTGGATAAACGTATAAAAATGCATTAAAAAATGCATAAAAAACTCCACTATATAACTGGTGGTACCGTTATGG
Unaligned ( gi|15 ): TCATATATGTTTGTAATTAATATACACAGAGTATTTTATGTTTAATGCTAATGAAACATTCGCATTCGCA