lowQualScore : 1 1 222 1 1111 11 1 1 111111 1 1 11111 222222222222222222222222 22222222222222222222222222 11111111111 111
lowQualScore : 2 0 5 888 2 4 7777 11 5 5 2 444444 5 99 6 8 0 7 4 66 00000 777 8888 4 55 44 0 999999999999999999 88 888888888888 1 444 444444444444444444444444 333 3 3 2 444 55555555555555555555555555 444 2 88888888888 2 111 55555 999999999 0
lowQualScore : . . . ... . . .... .. . . . ...... . .. . . . . . .. ..... ... .... . .. .. . .................. .. ............ . ... ........................ ... . . . ... .......................... ... . ........... . ... ..... ......... .
lowQualScore : 5 0 0 555 0 0 0000 99 0 0 0 444444 0 22 7 0 6 0 4 11 00000 000 5555 0 55 66 9 333333333333333333 77 222222222222 4 111 111111111111111111111111 999 6 6 0 111 99999999999999999999999999 444 4 22222222222 4 000 99999 444444444 5
consensus : ATACNT-TTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAA-CCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTC----TG-GCAGTTAGAAAAATGTTGACAAATGACGAAATACAGGAGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACACGA--AAA-ATGGA-AGAAAATACACATATGACATAATTTT-T--ATGAAAAATAGGAAATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTA---------C--------AATACTGAATTCAN-TTGGAC--TCG-------TACACAGC---AGT------------------------AAT---AATCCANATNTG-GATT---ATT------------------------A-CT---GCTGTGT-ACNN---------GTCC-AATN-GAATTCAGTATT-----G---------TACTCAACACTGTTAAATGACCT
Reference ( gi|4 ) : ATATCT-TTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACAAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAA-C-ATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTC----TG-ACAGTTAGAAAAATGTTGACAAATGACCAAATACAGGAGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACATAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACAGAGTGAAACACGA--AAA-ATGGA-AGAAAATACACATATGACATAGTTTT-T--ATGAAAAATAGGAAATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTA---------C--------AATACTGAATTCAT-TTGGAC--TCG-------TACACAGC---AGT------------------------AAT---AATCCATATTTG-GATT---ATT------------------------A-CT---GCTGTGT-ACTC---------GTCC-AATA-GAATTCAGTATT-----G---------TACTCAACACTGTTAAATAACCT
gi|11 : ATATATATTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACAATAAAATATAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGAATATAATAGCATCATCAGAAACC------------------ATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTC----TG-GTAGTTAGAAAAATGTTGACAAATGACGAAATACAGGAG-TTTTAGCGGCA-----TGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATT-ATGGTGTGAAATAAAG
gi|1 : cgtccaaatatggattattactgctgtgtacgagtccaaatgaattcagtattgtactcaacactgttaaatgacctACCT-TTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAA-CCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCTATATTTTTTCCATATTGGACGGGACTTTTCGTACGA-TGTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTC----TG-GCAGTTAGAAAAATGTTGACAAATGACGAAACACAGGAGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACACGA--AAA-ATGGA-AGAAAATACACATATGACATAATTTT-T--ATTAAAAATAGGAAATTTTCAAATTG-----TCAATGAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTAC-GTGTGAA--ATAAAGAGGCCATTTAACAGTGTTGAGTA---------C--------AATACTGAATTCAT-TTGGAC--TCG-------TACACAGC---AGT------------------------AAT---A-------------ATT---ATT------------------------A-CT---GCTGCGT-ACTC---------GTCC-AATA-GAATTCAGTATT-----G---------TTCTCAACACTGTTAAATAACCTatctgttat
gi|8 : atc-TTTATTTCACACCCGTATGCTTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTTATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACC-ATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGTCGGGACAATTCGTACGATTTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCAAATTGTACAGTTcataatataaacacggaatcgtcccgtaatttactttacggatttt
gi|9 : taaaacaa-TTTATTTCACATCCGTATGCTTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAATATTGTACTGTACGATTTTATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACC-ATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGATTTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCAAATTGTACAGTTttgttatatcacgtaaatacacatatgacataatttttatgaaaaataggaaattttcaaattgtcaatgaaatccgttatgtaaatggtacttttcccgtcatttgtcattatttattatggtgtgaaataaagaggtcatttaacagtgttgagtacaatactgaattcatttggactcgtacacagcagtaataatctatatttggactc
gi|10 : tccaactatagattattactgctgtgtacgagtccaaatgaattcagtattgtactcaacactgttaaatgacctctttatttcacaccataataaataatgacaaatgacgggaaaagtaccatttacataacggattttattgacaatttgaaaatttcctatttttcataaaaattatgtcatatgtgtatttacgtgatataacaaTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCGCGTGATGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAAAC-ATATTTTTTTCGTATTGGACTCGATCCCAAAAATCTATATTTTTTCCATATTGGACGGGACAATTCATACGATTTTT-TTACCCTTCCGAATCATTCGGAGTTA-TCCCCTTGTATAAAGTGTTTCGTC----TG-CCAGTTAGAAAAATGTTGACAAATGACGAAATACAGGAGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATCAATACATTTTATCGATGG------ATAAAGGAAAATTTATCGAGTGAAACACGA--AAA-ATGGA-AG-AAATACtattgt
gi|6 : taataaataaaagttaTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAATACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAA-CCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACTATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGATACTCACCTTGTATAAAGTGTTTCGTC----TG-GCAGTTAGAAAAATGTTGACAAATGACGAAATACAGGAGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAAAACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACACGAATAAA-ATcacctccacaactgaatcaaatactgagaacattttttgtcaaaatcagg
gi|7 : aACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTT-TTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAA-CCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCAATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTC----TG-GCAGTTAGAAAAATGTTGACAAATGACGAAATACAGGAGTTTTTAGCTGAAAATGCCGCA-AAATATACGAAAAGAA----AT------ACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTccgttatgtaaatggtacttttcccttcatttgtcgttatttattatggtgtgaaataaagaggtcatttaacagtgttgagtacaatactgaattcatttggactcgtacacagcagtaataatccatatttg
gi|3 : GTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTAC-AT---------CTATAATAGCATCATCAGAAACCTACAATCCAAGAAAA-CTATA-TTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCTTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTC----TG-GCAGTTAGAAAAATGTTGACAAATGACGAAATACAGGAGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGCAACACGA--AAA-ATGGA-AG-AAATACttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatatcacgtaaatacacatatgacataatctttatgaaaaataggaaattttcaaattgtcaataaaatccgttatgtaaatggtacttttcccgtcatttgtcattatttat
gi|2 : CAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAA-CCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCAAATTGGACAGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTC----TG-GCAGTTAGGAAAATGTTGACAAATGACGAAATACAGGAGTTTTTAGCTGAAAATGCCTCACAAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTcacctccacaactgaatcaattactgagttaattgttttcaaagttgaaaattgtagttttgttatatcacgtaaatacacatatgacataatttttatgaaaaataggaatttttcaaattgtcaataacatccgtaatgtaaatggtacttttcccgtcatttgtcattatttattatggtgtgaaataaagaggtcatttaacagtgttgagtacgcagcagtaataatacatatttggacgaggctcgtccaaatatggattattatttctgtgtacgagtccaatagaattcagtattg
gi|5 : AAAACTTTTGTTAACATCACGTGACGATAAAATAGAAACCAGTAGTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAA-CCATATTTTTTTCATATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTTTTTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTC----TG-GCAGTTAGAAAAATGTTGACAAATGACGAAATACAGGAGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAGAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACATGA--AAA-ATGGA-AGAAAATACACATATGACATAATTTT-T--ATGAAAAATAGGAAATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCTCGTCAT-T--TGTCATTATTTATTATGGTNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------N--------NNNNNNNNNNNNNN-NNNNNN--NNN-------NNNNNNNN---NNN------------------------NNN---NNNNNNNNNNTG-GATT---ATT------------------------A-CT---GCTGCGT-ACTC---------GTCC-AATA-GAATTTAGTATT-----G---------TACTCAACACTGTTAAATAACCTttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatgtcacgtaaatacacatatgacataattttttatgaaaaataggaaattttcaaattgtcaataaaatccgttatgtaaatgatacttttcccatcatttgtcattatttattatggtgtgaaataaagaggtcatttaagagtgttgagtacaatactgaattcatttggactcgtacacagcagtaataatccatatttggactcgcattcgcctcgtcaaaatatagattattactgctgcgtactcgtccagtagaattcagtattgtactcaacactgt
gi|6 : AAATACGA--AAAGAAAGACAGAAAATG-ACAT-TAAAACATTTTA-TCGATGGATAAAGGAAAATTTACCGAGTGAAACACGAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCTTCAT-T--TGTCGTTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTA---------C--------AATACTGAATTCAT-TTGGAC--TCG-------TACACAGC---AGT------------------------AAT---AATCCATATTTG-ca
gi|3 : attatttcacacccgtatgatttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacggtttcttaatactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatccatattttttccatattggacgggactattcgtacgattttttacccttccgagtcgttcggagatactcaccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaatacaggagtttttagctgaaaatgccgcaaaAAATACACATATGACATAATTTT-T--ATGAAAAATAGGAATTTTTCAAATTG-----TCAATAACATCCGTAATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTA---------CGCAGCAGTAATAATACAT--AT-TTGGAC--GAG-------------GC--------------------------------T---CGTCCAAATATG-GATT---ATT------------------------A-TT---TCTGTGT-ACGA---------GTCC-AATA-GAATTCAGTATT-----G---------
gi|7 : gtatgatttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacatctataatagcatcatcagaaacctacaatccaagaaaactatattttttcgtattggactcgatcccaaaaatccatattttttccatattggacgggacaattcgtacgattttttacctttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaatacaggagtttttagctgaaaatgccgcaaaaaatacgaaaagaaagacagaaaatgacattaatacattttatcgatggataaaggaaaatttaccgagtgcaacacgaaaaatggaagaaataccacctccacaactgaatcaattactgagttaattgttttcaaagttgaaaattgtagttttgttatatcacgtAAATACACATATGACATAATCTT-T--ATGAAAAATAGGAAATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTAT
gi|2 : acacccgtatgatttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacggtttttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatcaatattttttccatattggacgggacaattcgtacgattttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaatacaggagtttttagctgaaaatgccgcaaaatatacgaaaagaaatacattaatacattttatcgatggataaaggaaaatttaccgagtttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatatcacgtAAATACACATATGACATAATTTTTT--ATGAAAAATAGGAAATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GATACTTT----TCCCATCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAAGAGTGTTGAGTA---------C--------AATACTGAATTCAT-TTGGAC--TCG-------TACACAGC---AGT------------------------AAT---AATCCATATTTG-GACTCGCATTCGCCTCGTCAAAATATAGATTATTA-CT---GCTGCGT-ACTC---------GTCC-AGTA-GAATTCAGTATT-----G---------TACTCAACACTGT
gi|8 : caattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacggtttcttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatccatattttttccaaattggacaggacaattcgtacgattttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttaggaaaatgttgacaaatgacgaaatacaggagtttttagctgaaaatgcctcacaaaaatacgaaaagaaagacagaaaatgacattaatacattttatcgatggataaaggaaaatttaccgagtttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatgtcacgtAAATACACATATGACATAATTTT-T--ATGAAAAATAGGAAATTTTCAAATTG-----TCAATGAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTA---------C--------AATACTGAATTCAT-TTGGAC--TCG-------TACACAGC---AGT------------------------AAT---AATCTATATTTG-GACT---
gi|9 : taaaacaatttatttcacacccgtatgctttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgattttatatgcatttacggtttcttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatccatattttttccatattggtcgggacaattcgtacgatttttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtcaaattgtacagttttgttatatcacgtAAATACACATATGACATAATTTT-T--ATGAAAAATAGGAAATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTA---------C--------AATACTGAATTCAT-TTGGAC--TCG-------TACACAGC---AGT------------------------AAT---AATCTATAGTTG-GAc
gi|14 : AAATACACATATGACATAATTTT-T--ATGAAAAATAGGAAATTTTCAAATTG-----TCAATAAAATCCGTacgtgatataacaaaactgtacaatttgacgaaacactttatacaaggggagtaactccgaacgactcggaagggtaaaaaaatcgtacgaattgtcccgtccaatatggaaaaaatatggatttttgggatcgagtccaatacgaaaaaaatatggttttcttggattgtaggtttctgatgatgctattatagtcttaagaaaccgtaaatgcatataaaatcgtacagtacaatattggtttctattttatcgtcacgtgatgtaaacaaaagttttcaattggtttaaagcatacggatgtgaaataaatattgt
gi|12 : actgacttataaattagtgtttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatatcacgtTAAGAAATTTCAAAATTA-----TTTATAAAAGACGACATGT--------GTACATTAGTCTCTTGTCACATAGTGT-GTGAATTATGATGATGTGAA--ATAAAGAGGTTACT-AACGGGATTGAGAA---------C--------AATACTGAAATCAA-TTGGACTATCAAAATGACTAC-CAAC--------------------------------T---CATCCAAATAAG-GAT----------------------------------T---GCT-------TC---------ATCC-AATT-AAATTTAGTATT-----ACATTAATTTTACTCA----TGTTAAA
gi|1 : atAAAATCCGTAAAGTAAATTACGGGACGAT----TCC-GT--------GT--TTAT--ATTATG---------------AGGTTATTTAACAGTGTTGAGAA---------C--------AATACTGAATTCTA-TTGGAC--GAG-------TACGCAGC---AGT------------------------AAT---AAT-------------T---ATT------------------------A-CT---GCTGTGT-ACGA---------GTCC-AAAT-GAATTCAGTATT-----G---------TACTCAACACTGTTAAATGGCCT
gi|11 : atcaccttttatttcacacccgtatgatttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacggtttcttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatctatattttttccatattggacgggacttttcgtacgatgttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaacacaggagtttttagctgaaaatgccgcaaaaaatacgaaaagaaagacagaaaatgacattaatacattttatcgatggataaaggaaaatttaccgagtgaaacacgaaaaatggaagaaaatacacatatgacataatttttattaaaaataggaaattttcaaattgtcaatgaaatccgttatgtaaatggtacttttcccgtcatttgtcattatttattacgtgtgaaataaagTTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTA---------C--------AATACTGAATTCAT-TTGGAC--TCG-------TACACAGC---AGT------------------------AAT---AATCCATATTTG-GA
gi|16 : cgTTATGATGTAGT--ATAAATAGAGCATT----AATGTTGAGTT---------C--------AATAATAAATTCA------AC--TTG-------TACACAGC---Aatgtattaatgtcattttctgtctttcttttcgtattttttgcatgccgctaaaactcctgtatttcgtcatttgtcaacatttttctaactaccagacgaaacactttatacaaggggagtaactccgaacgactcggaagggtaaaaaatcgtacgaattgtcccgtccaatatggaaaaaatatggatttttgggatcgagtccaatacgaaaaaaatatggtttctgatgatgctattatattcttaagaaaccgtaaatgcatatgaaatcgtacagtacaatactggtttatattttattgtcacgtgatgtaaacaaaagttttcaattggtttaaatcatacgggtgtgaaataaatatatatatctgttat
gi|13 : gtGTGAGTTATAAAGAGGGT-TTTAACAGTGTTCAATA---------C--------AATACTGACTTCAG-TTTGAC--T--------------AGC---AGG------------------------TAT---ATGCCATATTTGTAATT---ATC------------------------AGAT---TCTATATGACTC---------GT
gi|15 : TAAAGAAATGATTGAACACTGTTAAGTA---------T--------ACGGCTG---TTATATTGGAC--TTG-------CATAC--CCTTAGA------------------------AAT---ATTCCATATTTG-GATT---tatcagctttttaggaaaaatcttatcggtcatttttt
gi|5 : GAGGTTATTTAACAGTGTTGAGTA---------C--------AATACTAAATTCTA-TTGGAC--GAG-------TACGCAGC---AGT------------------------AAT---AATCCA
gi|17 : aaaacttttgttaacatcacgtgacgataaaatagaaaccagtagtgtactgtacgatttcatatgcatttacggtttcttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcatattggactcgatcccaaaaatccatattttttccatattggacgggacaattcgtacgatttttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaatacaggagtttttagctgaaaatgccgcaaaaaatacgaagagaaagacagaaaatgacattaatacattttatcgatggataaaggaaaatttaccgagtgaaacatgaaaaatggaagaaaatacacatatgacataatttttatgaaaaataggaaattttcaaattgtcaataaaatccgttatgtaaatggtacttttctcgtcatttgtcattatttattatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTTGTTAAATAATGCTGAATA---------C--------AATACTGAATT-ATACTGGAC--a
gi|12 : cttTTTAACA----TGAGTAAAATTAATGT--------AATACTAAATTTAA-TTGGAT------------------------GA------------------------AGC---AATCCTTATTTG-GATG---A---------------------------------GTTG-GT-AGTCATTTTGATAGTCC-AATT-GATTTCAGTATT-----G---------TTCTCAATCCCGTT-AGTAACCTataatta
gi|2 : attaagaaatttcaaaattatttataaaagacgacatgtgtacattagtctcttgtcacatagtgtgtgaattatgatgatgtgaaataaagACAGTGTTGAGTA---------C--------AATACTGAATTCTA-CTGGAC--GAG-------TACGCAGC---AGTAATAATCTATATTTTGACGAGGCGAATGCGAGTCCAAATATG-GATT---ATT------------------------A-CT---GCTGTGT-ACGA---------GTCC-AAAT-GAATTCAGTATT-----G---------TACTCAACACTCTTAAATGACCT
gi|3 : caattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacggtttcttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatccatattttttccaaattggacaggacaattcgtacgattttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttaggaaaatgttgacaaatgacgaaatacaggagtttttagctgaaaatgcctcacaaaaatacgaaaagaaagacagaaaatgacattaatacattttatcgatggataaaggaaaatttaccgagtttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatgtcacgtaaatacacatatgacataattttttatgaaaaataggaaattttcaaattgtcaataaaatccgttatgtaaatgatacttttcccatcatttgtcattatttattatggtgtgaaataaag---------C--------AATACTGAATTCTA-TTGGAC--TCG-------TACACAGA---AAT------------------------AAT---AATCCATATTTG-GACG---A---------------------------------GC-------CTC---------GTCCAAATATGTATT-ATTACTGCTGCG---------TACTCAACACTGTTAAATGACCT
gi|8 : gtatgatttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacatctataatagcatcatcagaaacctacaatccaagaaaactatattttttcgtattggactcgatcccaaaaatccatattttttccatattggacgggacaattcgtacgattttttacctttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaatacaggagtttttagctgaaaatgccgcaaaaaatacgaaaagaaagacagaaaatgacattaatacattttatcgatggataaaggaaaatttaccgagtgcaacacgaaaaatggaagaaataccacctccacaactgaatcaattactgagttaattgttttcaaagttgaaaattgtagttttgttatatcacgtaaatacacatatgacataatttttatgaaaaataggaatttttcaaattgtcaataacatccgtaatgtaaatggtacttttcccgtcatttgtcattatttattatggtgtgaaataaag---AGTCCAAATATA-GATT---ATT------------------------A-CT---GCTGTGT-ACGA---------GTCC-AAAT-GAATTCAGTATT-----G---------TACTCAACACTGTTAAATGACCT
gi|15 : taaaacaatttatttcacacccgtatgctttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgattttatatgcatttacggtttcttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatccatattttttccatattggtcgggacaattcgtacgatttttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtcaaattgtacagttttgttatatcacgtaaatacacatatgacataatttttatgaaaaataggaaattttcaaattgtcaatgaaatccgttatgtaaatggtacttttcccgtcatttgtcattatttattatggtgtgaaataaag---AATCCAAATATG-GAAT---ATT------------------------T-CTAAGGGTATGC-AA-----------GTCC-AATA-TAA--CAGCCGT-----A---------TACTTAACAGTGTTCAATc
gi|11 : taaagaaatgTCCAAATATG-GATT---ATT------------------------A-CT---GCTGTGT-ACGA---------GTCC-AAAT-GAATTCAGTATT-----G---------TACTCAACACTGTTAAATGACCT
gi|6 : cgCAAATATG-GATT---ATT------------------------A-CT---GCTGTGT-ACGA---------GTCC-AAAT-GAATTCAGTATT-----G---------TACTCAACACTGTTAAATGACCTctttatttcacaccataataaaatgtattaatgtcattttctgtctttcttttcgtattttttgcatgccgctaaaactcctgtatttcgtcatttgtcaacatttttctaactaccagacgaaacactttatacaaggggagtaactccgaacgactcggaagggtaaaaaatcgtacgaattgtcccgtccaatatggaaaaaatatggatttttgggatcgagtccaatacgaaaaaaatatggtttctgatgatgctattatattcttaagaaaccgtaaatgcatatgaaatcgtacagtacaatactggtttatattttattgtcacgtgatgtaaacaaaagttttcaattggtttaaatcatacgggtgtgaaataaatatatatatctgttat
gi|9 : attatttcacacccgtatgatttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacggtttcttaatactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatccatattttttccatattggacgggactattcgtacgattttttacccttccgagtcgttcggagatactcaccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaatacaggagtttttagctgaaaatgccgcaaaaaatacgaaaagaaagacagaaaatgacattaaaacattttatcgatggataaaggaaaatttaccgagtgaaacacgaataaaatccgttatgtaaatggtacttttcccttcatttgtcgttatttattatggtgtgaaataaagTA-GATT---ATT------------------------A-CT---GCTGTGT-ACGA---------GTCC-AAAT-GAATTCAGTATT-----G---------TACTCAACACTGTTAAATGACCT
gi|16 : tccaactaT---GCTGTGT-ACAA---------GTT-------GAATTTATTATT-----G---------AACTCAACATTctttatttcacaccataataaataatgacaaatgacgggaaaagtaccatttacataacggattttattgacaatttgaaaatttcctatttttcataaaaattatgtcatatgtgtatttacgtgatataacaaaactgtacaatttgacgaaacactttatacaaggggagtaactccgaacgactcggaagggtaaaaaaatcgtacgaattgtcccgtccaatatggaaaaaatatggatttttgggatcgagtccaatacgaaaaaaatatggttttcttggattgtaggtttctgatgatgctattatagtcttaagaaaccgtaaatgcatataaaatcgtacagtacaatattggtttctattttatcgtcacgtgatgtaaacaaaagttttcaattggtttaaagcatacggatgtgaaataaatattgt
gi|13 : gtttatgatgtagtataaatagagcattT-GCTA---------GTCA-AACT-GAAGTCAGTATT-----G---------TATTGAACACTGTTAAA
gi|17 : acgagtcatatagaatctgataattacaaatatggcatataccCTT---------GTCC-AGTA-TAATTCAGTATT-----G---------TATTCAGCATTATTTAACAACaccctctttataactcactatcagctttttaggaaaaatcttatcggtcatttttt
Alignments
lowQualScore : 1 11111 111 111111 11111111 444444444444444444444444 222222222
lowQualScore : 1 8 0 3 7 88888 222 4 222222 77 5 6 7 3 3 55 55 555 3 88888 666 7777 3 55 44 0 00000000 3 33 0 1 777 3 0 3 3 3 777 888888888888888888888888 0 22 1 000000000 0 2
lowQualScore : . . . . . ..... ... . ...... .. . . . . . .. .. ... . ..... ... .... . .. .. . ........ . .. . . ... . . . . . ... ........................ . .. . ......... . .
lowQualScore : 0 0 9 6 3 22222 777 4 888888 99 7 7 3 6 6 00 00 888 3 33333 444 7777 6 00 22 4 44444444 8 99 2 5 999 1 7 2 2 1 000 111111111111111111111111 9 00 0 000000000 1 8
consensus : ATACNT-TTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACACGA--AAA-ATGGA-AGAAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCATTTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-GATT---ATT------------------------ACTGCTGCGTACTCGTCCAATAGAATTCAGTATTG---------TACTCAACACTGTTAAATAACCT
Reference ( family-621 ) : ATACNT-TTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACACGA--AAA-ATGGA-AGAAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCANTTGGAC--TCGTACACAGC---AGTAA-TAATCCANATNTG-GATT---ATT------------------------ACTGCTGTGTACNNGTCCAATNGAATTCAGTATTG---------TACTCAACACTGTTAAATGACCT
gi|1 : ACCT-TTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCTATATTTTTTCCATATTGGACGGGACTTTTCGTACGA-TGTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAACACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACACGA--AAA-ATGGA-AGAAAATACACAT-ATGACATAATTTT-T--ATTAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATGAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTAC-GTGTGAA--ATAAAGAGGCCATTTAACAGTGTTGAGTAC--------AATACTGAATTCATTTGGAC--TCGTACACAGC---AGTAA-TA-------------ATT---ATT------------------------ACTGCTGCGTACTCGTCCAATAGAATTCAGTATTG---------TTCTCAACACTGTTAAATAACCT
gi|1 : atcAAAATCCGTAAAGTAAATTACGGGACGAT----TCC-GT--------GT--TTAT--ATTATG---------------AGGTTATTTAACAGTGTTGAGAAC--------AATACTGAATTCTATTGGAC--GAGTACGCAGC---AGTAA-TAAT-------------T---ATT------------------------ACTGCTGTGTACGAGTCCAAATGAATTCAGTATTG---------TACTCAACACTGTTAAATGGCCTcataatataaacacggaatcgtcccgtaatttactttacggatttt
gi|10 : atcaccttttatttcacacccgtatgatttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacggtttcttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatctatattttttccatattggacgggacttttcgtacgatgttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaacacaggagtttttagctgaaaatgccgcaaaaaatacgaaaagaaagacagaaaatgacattaatacattttatcgatggataaaggaaaatttaccgagtgaaacacgaaaaatggaagaaaatacacatatgacataatttttattaaaaataggaaattttcaaattgtcaatgaaatccgttatgtaaatggtacttttcccgtcatttgtcattatttattacgtgtgaaataaagTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCGCGTGATGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAAACATATTTTTTTCGTATTGGACTCGATCCCAAAAATCTATATTTTTTCCATATTGGACGGGACAATTCATACGATTTTT-TTACCCTTCCGAATCATTCGGAGTTA-TCCCCTTGTATAAAGTGTTTCGTCTGCCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATCAATACATTTTATCGATGG------ATAAAGGAAAATTTATCGAGTGAAACACGA--AAA-ATGGA-AG-AAATAC-CAC-CT-CCACAAC--------TGAATCAAATACTGAGAACATTTT----TTG-----TC---AAAATC
gi|11 : taataaataaaagttaTTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCATTTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-GAagg
gi|11 : cgATATATATTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACAATAAAATATAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGAATATAATAGCATCATCAGAAAC-----------------CATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGTAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AG-TTTTAGCGGCA-----TGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATT-ATGGTGTGAAATAAAGatgtattaatgtcattttctgtctttcttttcgtattttttgcatgccgctaaaactcctgtatttcgtcatttgtcaacatttttctaactaccagacgaaacactttatacaaggggagtaactccgaacgactcggaagggtaaaaaatcgtacgaattgtcccgtccaatatggaaaaaatatggatttttgggatcgagtccaatacgaaaaaaatatggtttctgatgatgctattatattcttaagaaaccgtaaatgcatatgaaatcgtacagtacaatactggtttatattttattgtcacgtgatgtaaacaaaagttttcaattggtttaaatcatacgggtgtgaaataaatatatatatctgttat
gi|12 : cgtccaaatatggattattactgctgtgtacgagtccaaatgaattcagtattgtactcaacactgttaaatgacctTA---AGAA-ATTTCAAAATTA-----TTTATAAAAGACGACATGT--------GTACATTAGTCTCTTGTCACATAGTGT-GTGAATTATGATGATGTGAA--ATAAAGAGGTTACT-AACGGGATTGAGAAC--------AATACTGAAATCAATTGGACTATCA-AAATGACT--ACCAACTCATCCAAATAAG-GAT---------------------------------TGCT------TCATCCAATTAAATTTAGTATTACATTAATTTTACTCA----TGTTAAAatctgttat
gi|13 : atGTGAGTTATAAAGAGGGT-TTTAACAGTGTTCAATAC--------AATACTGACTTCAGTTTGAC--T-------AGC---AGGTA-TATGCCATATTTGTAATT---ATC------------------------A
gi|14 : acgagtcatatagaatcAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTtatcagctttttaggaaaaatcttatcggtcatttttt
gi|15 : actgacttataaattagtgtttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatatcacgtTAAAGAAATGATTGAACACTGTTAAGTAT--------ACGGCTG--TTATATTGGAC--TTGCATAC--CCTTAGAAA-TATTCCATATTTG-GATT---
gi|16 : TTATGATGTAGT--ATAAATAGAGCATT----AATGTTGAGTTC--------AATAATAAATTCA-----AC--TTGTACACAGC---A
gi|17 : gtCTTGTCCAGTATAATTCAGTATTG---------TATTCAGCATTATTTAACAAC
gi|2 : CAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCAAATTGGACAGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGGAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCTCACAAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTataatta
gi|2 : AAATACACAT-ATGACATAATTTTTT--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GATACTTT----TCCCATCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAAGAGTGTTGAGTAC--------AATACTGAATTCATTTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-GACTCGCATTCGCCTCGTCAAAATATAGATTATTACTGCTGCGTACTCGTCCAGTAGAATTCAGTATTG---------TACTCAACACTGTttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatgtcacgtaaatacacatatgacataattttttatgaaaaataggaaattttcaaattgtcaataaaatccgttatgtaaatgatacttttcccatcatttgtcattatttattatggtgtgaaataaagaggtcatttaagagtgttgagtacaatactgaattcatttggactcgtacacagcagtaataatccatatttggactcgcattcgcctcgtcaaaatatagattattactgctgcgtactcgtccagtagaattcagtattgtactcaacactgt
gi|3 : caattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacggtttcttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatccatattttttccaaattggacaggacaattcgtacgattttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttaggaaaatgttgacaaatgacgaaatacaggagtttttagctgaaaatgcctcacaaaaatacgaaaagaaagacagaaaatgacattaatacattttatcgatggataaaggaaaatttaccgagtttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatgtcacgtGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTAC-AT---------CTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACTATA-TTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCTTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGCAACACGA--AAA-ATGGA-AG-AAATAC
gi|3 : AAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-TTTTTCAAATTG-----TCAATAACATCCGTAATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTACGCAGCAGTAATAATACAT--ATTTGGAC--GAG------GC---------TCGTCCAAATATG-GATT---ATT------------------------ATTTCTGTGTACGAGTCCAATAGAATTCAGTATTG---------cacctccacaactgaatcaattactgagttaattgttttcaaagttgaaaattgtagttttgttatatcacgtaaatacacatatgacataatttttatgaaaaataggaatttttcaaattgtcaataacatccgtaatgtaaatggtacttttcccgtcatttgtcattatttattatggtgtgaaataaagaggtcatttaacagtgttgagtacgcagcagtaataatacatatttggacgaggctcgtccaaatatggattattatttctgtgtacgagtccaatagaattcagtattg
gi|4 : gtatgatttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacatctataatagcatcatcagaaacctacaatccaagaaaactatattttttcgtattggactcgatcccaaaaatccatattttttccatattggacgggacaattcgtacgattttttacctttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaatacaggagtttttagctgaaaatgccgcaaaaaatacgaaaagaaagacagaaaatgacattaatacattttatcgatggataaaggaaaatttaccgagtgcaacacgaaaaatggaagaaataccacctccacaactgaatcaattactgagttaattgttttcaaagttgaaaattgtagttttgttatatcacgtATATCT-TTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACAAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAAC-ATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGACAGTTAGAAAAATGTTGACAAATGACC-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACATAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACAGAGTGAAACACGA--AAA-ATGGA-AGAAAATACACAT-ATGACATAGTTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCATTTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-GATT---ATT------------------------ACTGCTGTGTACTCGTCCAATAGAATTCAGTATTG---------TACTCAACACTGTTAAATAACCT
gi|5 : AAAACTTTTGTTAACATCACGTGACGATAAAATAGAAACCAGTAGTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCATATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTTTTTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAGAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACATGA--AAA-ATGGA-AGAAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCTCGTCAT-T--TGTCATTATTTATTATGGTNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNN---NNNNN-NNNNNNNNNNNTG-GATT---ATT------------------------ACTGCTGCGTACTCGTCCAATAGAATTTAGTATTG---------TACTCAACACTGTTAAATAACCT
gi|6 : TTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAATACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACTATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGATACTCACCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAAAACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACACGAATAAA-ATca
gi|6 : aGAAAAT--GCCGCAAAAAATACGA--AAAGAAAGACAGAAAATG-ACATTAAAACAT--TTTA-TCGATGGA--TAAAG---GAAA-ATTTACCGAGTGAAACACGAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCTTCAT-T--TGTCGTTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCATTTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-ccgttatgtaaatggtacttttcccttcatttgtcgttatttattatggtgtgaaataaagaggtcatttaacagtgttgagtacaatactgaattcatttggactcgtacacagcagtaataatccatatttg
gi|7 : attatttcacacccgtatgatttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacggtttcttaatactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatccatattttttccatattggacgggactattcgtacgattttttacccttccgagtcgttcggagatactcaccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaatacaggagtttttagctACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTT-TTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCAATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAATATACGAAAAG---------AAAT-ACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGT
gi|7 : AAATACACAT-ATGACATAATCTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatatcacgtaaatacacatatgacataatctttatgaaaaataggaaattttcaaattgtcaataaaatccgttatgtaaatggtacttttcccgtcatttgtcattatttat
gi|8 : acacccgtatgatttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacggtttttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatcaatattttttccatattggacgggacaattcgtacgattttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaatacaggagtttttagctgaaaatgccgcaaaatatacgaaaagaaatacattaatacattttatcgatggataaaggaaaatttaccgagtttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatatcacgtACAA-TTTATTTCACACCCGTATGCTTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTTATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGTCGGGACAATTCGTACGATTTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTC---AAATT-GTACAGTTTTGTTATATCACGTAAATACACATATGACATAATTTTTA--TGAAAA
gi|8 : taaaAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATGAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCATTTGGAC--TCGTACACAGC---AGTAA-TAATCTATATTTG-GACT---ataggaaattttcaaattgtcaatgaaatccgttatgtaaatggtacttttcccgtcatttgtcattatttattatggtgtgaaataaagaggtcatttaacagtgttgagtacaatactgaattcatttggactcgtacacagcagtaataatctatatttggactc
gi|9 : taaaacaatttatttcacacccgtatgctttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgattttatatgcatttacggtttcttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatccatattttttccatattggtcgggacaattcgtacgatttttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtcaaattgtacagttttgttatatcacgtAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCATTTGGAC--TCGTACACAGC---AGTAA-TAATCTATAGTTG-GAc
gi|9 : -TTTATTTCACATCCGTATGCTTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAATATTGTACTGTACGATTTTATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGATTTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTC---AAATT-GTACAGTTTTGTTATATCACGTAAATACACATATGACATAATTTTTA--TGAAAAacgtgatataacaaaactgtacaatttgacgaaacactttatacaaggggagtaactccgaacgactcggaagggtaaaaaaatcgtacgaattgtcccgtccaatatggaaaaaatatggatttttgggatcgagtccaatacgaaaaaaatatggttttcttggattgtaggtttctgatgatgctattatagtcttaagaaaccgtaaatgcatataaaatcgtacagtacaatattggtttctattttatcgtcacgtgatgtaaacaaaagttttcaattggtttaaagcatacggatgtgaaataaatattgt
Alignments
lowQualScore : 1 11111 111 111111 11111111 444444444444444444444444 222222222
lowQualScore : 1 8 0 3 7 88888 222 4 222222 77 5 6 7 3 3 55 55 555 3 88888 666 7777 3 55 44 0 00000000 33 33 0 1 777 3 0 3 777 888888888888888888888888 0 000000000 0
lowQualScore : . . . . . ..... ... . ...... .. . . . . . .. .. ... . ..... ... .... . .. .. . ........ .. .. . . ... . . . ... ........................ . ......... .
lowQualScore : 0 0 9 6 3 22222 777 4 888888 99 7 7 3 6 6 00 00 888 3 33333 444 7777 6 00 22 4 44444444 55 99 2 5 999 1 7 1 000 111111111111111111111111 4 000000000 1
consensus : ATACNT-TTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACACGA--AAA-ATGGA-AGAAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-GATT---ATT------------------------ACTGCTGCGTACTCGTCCAATAGAATTCAGTATTG---------TACTCAACACTGTTAAATAACCT
Reference ( family-621 ) : ATACNT-TTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACACGA--AAA-ATGGA-AGAAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-GATT---ATT------------------------ACTGCTGCGTACTCGTCCAATAGAATTCAGTATTG---------TACTCAACACTGTTAAATAACCT
gi|1 : ACCT-TTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCTATATTTTTTCCATATTGGACGGGACTTTTCGTACGA-TGTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAACACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACACGA--AAA-ATGGA-AGAAAATACACAT-ATGACATAATTTT-T--ATTAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATGAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTAC-GTGTGAA--ATAAAGAGGCCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TA-------------ATT---ATT------------------------ACTGCTGCGTACTCGTCCAATAGAATTCAGTATTG---------TTCTCAACACTGTTAAATAACCT
gi|1 : atcAAAATCCGTAAAGTAAATTACGGGACGAT----TCC-GT--------GT--TTAT--ATTATG---------------AGGTTATTTAACAGTGTTGAGAAC--------AATACTGAATTCTA-TTGGAC--GAGTACGCAGC---AGTAA-TAAT-------------T---ATT------------------------ACTGCTGTGTACGAGTCCAAATGAATTCAGTATTG---------TACTCAACACTGTTAAATGGCCTcataatataaacacggaatcgtcccgtaatttactttacggatttt
gi|10 : atcaccttttatttcacacccgtatgatttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacggtttcttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatctatattttttccatattggacgggacttttcgtacgatgttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaacacaggagtttttagctgaaaatgccgcaaaaaatacgaaaagaaagacagaaaatgacattaatacattttatcgatggataaaggaaaatttaccgagtgaaacacgaaaaatggaagaaaatacacatatgacataatttttattaaaaataggaaattttcaaattgtcaatgaaatccgttatgtaaatggtacttttcccgtcatttgtcattatttattacgtgtgaaataaagTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCGCGTGATGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAAACATATTTTTTTCGTATTGGACTCGATCCCAAAAATCTATATTTTTTCCATATTGGACGGGACAATTCATACGATTTTT-TTACCCTTCCGAATCATTCGGAGTTA-TCCCCTTGTATAAAGTGTTTCGTCTGCCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATCAATACATTTTATCGATGG------ATAAAGGAAAATTTATCGAGTGAAACACGA--AAA-ATGGA-AG-AAATAC-CAC-CT-CCACAAC--------TGAATCAAATACTGAGAACATTTT----TTG-----TC---AAAATC
gi|11 : taataaataaaagttaTTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-GAagg
gi|11 : cgATATATATTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACAATAAAATATAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGAATATAATAGCATCATCAGAAAC-----------------CATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGTAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AG-TTTTAGCGGCA-----TGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATT-ATGGTGTGAAATAAAGatgtattaatgtcattttctgtctttcttttcgtattttttgcatgccgctaaaactcctgtatttcgtcatttgtcaacatttttctaactaccagacgaaacactttatacaaggggagtaactccgaacgactcggaagggtaaaaaatcgtacgaattgtcccgtccaatatggaaaaaatatggatttttgggatcgagtccaatacgaaaaaaatatggtttctgatgatgctattatattcttaagaaaccgtaaatgcatatgaaatcgtacagtacaatactggtttatattttattgtcacgtgatgtaaacaaaagttttcaattggtttaaatcatacgggtgtgaaataaatatatatatctgttat
gi|12 : cgtccaaatatggattattactgctgtgtacgagtccaaatgaattcagtattgtactcaacactgttaaatgacctTA---AGAA-ATTTCAAAATTA-----TTTATAAAAGACGACATGT--------GTACATTAGTCTCTTGTCACATAGTGT-GTGAATTATGATGATGTGAA--ATAAAGAGGTTACT-AACGGGATTGAGAAC--------AATACTGAAATCAA-TTGGACTATCA-AAATGACT--ACCAACTCATCCAAATAAG-GAT---------------------------------TGCT------TCATCCAATTAAATTTAGTATTACATTAATTTTACTCA----TGTTAAAatctgttat
gi|13 : atGTGAGTTATAAAGAGGGT-TTTAACAGTGTTCAATAC--------AATACTGACTTCAG-TTTGAC--T-------AGC---AGGTA-TATGCCATATTTGTAATT---ATC------------------------A
gi|14 : acgagtcatatagaatcAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTtatcagctttttaggaaaaatcttatcggtcatttttt
gi|15 : actgacttataaattagtgtttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatatcacgtTAAAGAAATGATTGAACACTGTTAAGTAT--------ACGGCTG---TTATATTGGAC--TTGCATAC--CCTTAGAAA-TATTCCATATTTG-GATT---
gi|16 : TTATGATGTAGT--ATAAATAGAGCATT----AATGTTGAGTTC--------AATAATAAATTCA------AC--TTGTACACAGC---A
gi|17 : gtCTTGTCCAGTATAATTCAGTATTG---------TATTCAGCATTATTTAACAAC
gi|2 : CAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCAAATTGGACAGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGGAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCTCACAAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTataatta
gi|2 : AAATACACAT-ATGACATAATTTTTT--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GATACTTT----TCCCATCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAAGAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-GACTCGCATTCGCCTCGTCAAAATATAGATTATTACTGCTGCGTACTCGTCCAGTAGAATTCAGTATTG---------TACTCAACACTGTttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatgtcacgtaaatacacatatgacataattttttatgaaaaataggaaattttcaaattgtcaataaaatccgttatgtaaatgatacttttcccatcatttgtcattatttattatggtgtgaaataaagaggtcatttaagagtgttgagtacaatactgaattcatttggactcgtacacagcagtaataatccatatttggactcgcattcgcctcgtcaaaatatagattattactgctgcgtactcgtccagtagaattcagtattgtactcaacactgt
gi|3 : caattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacggtttcttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatccatattttttccaaattggacaggacaattcgtacgattttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttaggaaaatgttgacaaatgacgaaatacaggagtttttagctgaaaatgcctcacaaaaatacgaaaagaaagacagaaaatgacattaatacattttatcgatggataaaggaaaatttaccgagtttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatgtcacgtGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTAC-AT---------CTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACTATA-TTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCTTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGCAACACGA--AAA-ATGGA-AG-AAATAC
gi|3 : AAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-TTTTTCAAATTG-----TCAATAACATCCGTAATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTACGCAGCAGTAATAATACAT--AT-TTGGAC--GAG------GC---------TCGTCCAAATATG-GATT---ATT------------------------ATTTCTGTGTACGAGTCCAATAGAATTCAGTATTG---------cacctccacaactgaatcaattactgagttaattgttttcaaagttgaaaattgtagttttgttatatcacgtaaatacacatatgacataatttttatgaaaaataggaatttttcaaattgtcaataacatccgtaatgtaaatggtacttttcccgtcatttgtcattatttattatggtgtgaaataaagaggtcatttaacagtgttgagtacgcagcagtaataatacatatttggacgaggctcgtccaaatatggattattatttctgtgtacgagtccaatagaattcagtattg
gi|4 : gtatgatttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacatctataatagcatcatcagaaacctacaatccaagaaaactatattttttcgtattggactcgatcccaaaaatccatattttttccatattggacgggacaattcgtacgattttttacctttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaatacaggagtttttagctgaaaatgccgcaaaaaatacgaaaagaaagacagaaaatgacattaatacattttatcgatggataaaggaaaatttaccgagtgcaacacgaaaaatggaagaaataccacctccacaactgaatcaattactgagttaattgttttcaaagttgaaaattgtagttttgttatatcacgtATATCT-TTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACAAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAAC-ATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGACAGTTAGAAAAATGTTGACAAATGACC-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACATAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACAGAGTGAAACACGA--AAA-ATGGA-AGAAAATACACAT-ATGACATAGTTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-GATT---ATT------------------------ACTGCTGTGTACTCGTCCAATAGAATTCAGTATTG---------TACTCAACACTGTTAAATAACCT
gi|5 : AAAACTTTTGTTAACATCACGTGACGATAAAATAGAAACCAGTAGTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCATATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTTTTTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAGAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACATGA--AAA-ATGGA-AGAAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCTCGTCAT-T--TGTCATTATTTATTATGGTNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNNNNNNN-NNNNNN--NNNNNNNNNNN---NNNNN-NNNNNNNNNNNTG-GATT---ATT------------------------ACTGCTGCGTACTCGTCCAATAGAATTTAGTATTG---------TACTCAACACTGTTAAATAACCT
gi|6 : TTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAATACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACTATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGATACTCACCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAAAACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACACGAATAAA-ATca
gi|6 : aGAAAAT--GCCGCAAAAAATACGA--AAAGAAAGACAGAAAATG-ACATTAAAACAT--TTTA-TCGATGGA--TAAAG---GAAA-ATTTACCGAGTGAAACACGAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCTTCAT-T--TGTCGTTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-ccgttatgtaaatggtacttttcccttcatttgtcgttatttattatggtgtgaaataaagaggtcatttaacagtgttgagtacaatactgaattcatttggactcgtacacagcagtaataatccatatttg
gi|7 : attatttcacacccgtatgatttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacggtttcttaatactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatccatattttttccatattggacgggactattcgtacgattttttacccttccgagtcgttcggagatactcaccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaatacaggagtttttagctACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTT-TTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCAATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAATATACGAAAAG---------AAAT-ACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGT
gi|7 : AAATACACAT-ATGACATAATCTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatatcacgtaaatacacatatgacataatctttatgaaaaataggaaattttcaaattgtcaataaaatccgttatgtaaatggtacttttcccgtcatttgtcattatttat
gi|8 : acacccgtatgatttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacggtttttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatcaatattttttccatattggacgggacaattcgtacgattttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaatacaggagtttttagctgaaaatgccgcaaaatatacgaaaagaaatacattaatacattttatcgatggataaaggaaaatttaccgagtttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatatcacgtACAA-TTTATTTCACACCCGTATGCTTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTTATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGTCGGGACAATTCGTACGATTTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTC---AAATT-GTACAGTTTTGTTATATCACGTAAATACACATATGACATAATTTTTA--TGAAAA
gi|8 : taaaAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATGAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCTATATTTG-GACT---ataggaaattttcaaattgtcaatgaaatccgttatgtaaatggtacttttcccgtcatttgtcattatttattatggtgtgaaataaagaggtcatttaacagtgttgagtacaatactgaattcatttggactcgtacacagcagtaataatctatatttggactc
gi|9 : taaaacaatttatttcacacccgtatgctttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgattttatatgcatttacggtttcttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatccatattttttccatattggtcgggacaattcgtacgatttttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtcaaattgtacagttttgttatatcacgtAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCTATAGTTG-GAc
gi|9 : -TTTATTTCACATCCGTATGCTTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAATATTGTACTGTACGATTTTATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGATTTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTC---AAATT-GTACAGTTTTGTTATATCACGTAAATACACATATGACATAATTTTTA--TGAAAAacgtgatataacaaaactgtacaatttgacgaaacactttatacaaggggagtaactccgaacgactcggaagggtaaaaaaatcgtacgaattgtcccgtccaatatggaaaaaatatggatttttgggatcgagtccaatacgaaaaaaatatggttttcttggattgtaggtttctgatgatgctattatagtcttaagaaaccgtaaatgcatataaaatcgtacagtacaatattggtttctattttatcgtcacgtgatgtaaacaaaagttttcaattggtttaaagcatacggatgtgaaataaatattgt
Alignments
lowQualScore : 1 11111 111 111111 11111111 444444444444444444444444 222222222
lowQualScore : 1 8 0 3 7 88888 222 4 222222 77 5 6 7 3 3 55 55 555 3 88888 666 7777 3 55 44 0 00000000 33 33 0 1 777 3 0 3 777 888888888888888888888888 0 000000000 0
lowQualScore : . . . . . ..... ... . ...... .. . . . . . .. .. ... . ..... ... .... . .. .. . ........ .. .. . . ... . . . ... ........................ . ......... .
lowQualScore : 0 0 9 6 3 22222 777 4 888888 99 7 7 3 6 6 00 00 888 3 33333 444 7777 6 00 22 4 44444444 55 99 2 5 999 1 7 1 000 111111111111111111111111 4 000000000 1
consensus : ATACNT-TTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACACGA--AAA-ATGGA-AGAAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-GATT---ATT------------------------ACTGCTGCGTACTCGTCCAATAGAATTCAGTATTG---------TACTCAACACTGTTAAATAACCT
Reference ( family-621 ) : ATACNT-TTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACACGA--AAA-ATGGA-AGAAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-GATT---ATT------------------------ACTGCTGCGTACTCGTCCAATAGAATTCAGTATTG---------TACTCAACACTGTTAAATAACCT
gi|1 : ACCT-TTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCTATATTTTTTCCATATTGGACGGGACTTTTCGTACGA-TGTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAACACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACACGA--AAA-ATGGA-AGAAAATACACAT-ATGACATAATTTT-T--ATTAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATGAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTAC-GTGTGAA--ATAAAGAGGCCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TA-------------ATT---ATT------------------------ACTGCTGCGTACTCGTCCAATAGAATTCAGTATTG---------TTCTCAACACTGTTAAATAACCT
gi|1 : atcAAAATCCGTAAAGTAAATTACGGGACGAT----TCC-GT--------GT--TTAT--ATTATG---------------AGGTTATTTAACAGTGTTGAGAAC--------AATACTGAATTCTA-TTGGAC--GAGTACGCAGC---AGTAA-TAAT-------------T---ATT------------------------ACTGCTGTGTACGAGTCCAAATGAATTCAGTATTG---------TACTCAACACTGTTAAATGGCCTcataatataaacacggaatcgtcccgtaatttactttacggatttt
gi|10 : atcaccttttatttcacacccgtatgatttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacggtttcttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatctatattttttccatattggacgggacttttcgtacgatgttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaacacaggagtttttagctgaaaatgccgcaaaaaatacgaaaagaaagacagaaaatgacattaatacattttatcgatggataaaggaaaatttaccgagtgaaacacgaaaaatggaagaaaatacacatatgacataatttttattaaaaataggaaattttcaaattgtcaatgaaatccgttatgtaaatggtacttttcccgtcatttgtcattatttattacgtgtgaaataaagTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCGCGTGATGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAAACATATTTTTTTCGTATTGGACTCGATCCCAAAAATCTATATTTTTTCCATATTGGACGGGACAATTCATACGATTTTT-TTACCCTTCCGAATCATTCGGAGTTA-TCCCCTTGTATAAAGTGTTTCGTCTGCCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATCAATACATTTTATCGATGG------ATAAAGGAAAATTTATCGAGTGAAACACGA--AAA-ATGGA-AG-AAATAC-CAC-CT-CCACAAC--------TGAATCAAATACTGAGAACATTTT----TTG-----TC---AAAATC
gi|11 : taataaataaaagttaTTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-GAagg
gi|11 : cgATATATATTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACAATAAAATATAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGAATATAATAGCATCATCAGAAAC-----------------CATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGTAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AG-TTTTAGCGGCA-----TGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATT-ATGGTGTGAAATAAAGatgtattaatgtcattttctgtctttcttttcgtattttttgcatgccgctaaaactcctgtatttcgtcatttgtcaacatttttctaactaccagacgaaacactttatacaaggggagtaactccgaacgactcggaagggtaaaaaatcgtacgaattgtcccgtccaatatggaaaaaatatggatttttgggatcgagtccaatacgaaaaaaatatggtttctgatgatgctattatattcttaagaaaccgtaaatgcatatgaaatcgtacagtacaatactggtttatattttattgtcacgtgatgtaaacaaaagttttcaattggtttaaatcatacgggtgtgaaataaatatatatatctgttat
gi|12 : cgtccaaatatggattattactgctgtgtacgagtccaaatgaattcagtattgtactcaacactgttaaatgacctTA---AGAA-ATTTCAAAATTA-----TTTATAAAAGACGACATGT--------GTACATTAGTCTCTTGTCACATAGTGT-GTGAATTATGATGATGTGAA--ATAAAGAGGTTACT-AACGGGATTGAGAAC--------AATACTGAAATCAA-TTGGACTATCA-AAATGACT--ACCAACTCATCCAAATAAG-GAT---------------------------------TGCT------TCATCCAATTAAATTTAGTATTACATTAATTTTACTCA----TGTTAAAatctgttat
gi|13 : atGTGAGTTATAAAGAGGGT-TTTAACAGTGTTCAATAC--------AATACTGACTTCAG-TTTGAC--T-------AGC---AGGTA-TATGCCATATTTGTAATT---ATC------------------------A
gi|14 : acgagtcatatagaatcAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTtatcagctttttaggaaaaatcttatcggtcatttttt
gi|15 : actgacttataaattagtgtttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatatcacgtTAAAGAAATGATTGAACACTGTTAAGTAT--------ACGGCTG---TTATATTGGAC--TTGCATAC--CCTTAGAAA-TATTCCATATTTG-GATT---
gi|16 : TTATGATGTAGT--ATAAATAGAGCATT----AATGTTGAGTTC--------AATAATAAATTCA------AC--TTGTACACAGC---A
gi|17 : gtCTTGTCCAGTATAATTCAGTATTG---------TATTCAGCATTATTTAACAAC
gi|2 : CAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCAAATTGGACAGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGGAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCTCACAAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTataatta
gi|2 : AAATACACAT-ATGACATAATTTTTT--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GATACTTT----TCCCATCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAAGAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-GACTCGCATTCGCCTCGTCAAAATATAGATTATTACTGCTGCGTACTCGTCCAGTAGAATTCAGTATTG---------TACTCAACACTGTttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatgtcacgtaaatacacatatgacataattttttatgaaaaataggaaattttcaaattgtcaataaaatccgttatgtaaatgatacttttcccatcatttgtcattatttattatggtgtgaaataaagaggtcatttaagagtgttgagtacaatactgaattcatttggactcgtacacagcagtaataatccatatttggactcgcattcgcctcgtcaaaatatagattattactgctgcgtactcgtccagtagaattcagtattgtactcaacactgt
gi|3 : caattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacggtttcttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatccatattttttccaaattggacaggacaattcgtacgattttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttaggaaaatgttgacaaatgacgaaatacaggagtttttagctgaaaatgcctcacaaaaatacgaaaagaaagacagaaaatgacattaatacattttatcgatggataaaggaaaatttaccgagtttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatgtcacgtGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTAC-AT---------CTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACTATA-TTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCTTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGCAACACGA--AAA-ATGGA-AG-AAATAC
gi|3 : AAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-TTTTTCAAATTG-----TCAATAACATCCGTAATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTACGCAGCAGTAATAATACAT--AT-TTGGAC--GAG------GC---------TCGTCCAAATATG-GATT---ATT------------------------ATTTCTGTGTACGAGTCCAATAGAATTCAGTATTG---------cacctccacaactgaatcaattactgagttaattgttttcaaagttgaaaattgtagttttgttatatcacgtaaatacacatatgacataatttttatgaaaaataggaatttttcaaattgtcaataacatccgtaatgtaaatggtacttttcccgtcatttgtcattatttattatggtgtgaaataaagaggtcatttaacagtgttgagtacgcagcagtaataatacatatttggacgaggctcgtccaaatatggattattatttctgtgtacgagtccaatagaattcagtattg
gi|4 : gtatgatttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacatctataatagcatcatcagaaacctacaatccaagaaaactatattttttcgtattggactcgatcccaaaaatccatattttttccatattggacgggacaattcgtacgattttttacctttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaatacaggagtttttagctgaaaatgccgcaaaaaatacgaaaagaaagacagaaaatgacattaatacattttatcgatggataaaggaaaatttaccgagtgcaacacgaaaaatggaagaaataccacctccacaactgaatcaattactgagttaattgttttcaaagttgaaaattgtagttttgttatatcacgtATATCT-TTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACAAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAAC-ATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGACAGTTAGAAAAATGTTGACAAATGACC-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACATAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACAGAGTGAAACACGA--AAA-ATGGA-AGAAAATACACAT-ATGACATAGTTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-GATT---ATT------------------------ACTGCTGTGTACTCGTCCAATAGAATTCAGTATTG---------TACTCAACACTGTTAAATAACCT
gi|5 : AAAACTTTTGTTAACATCACGTGACGATAAAATAGAAACCAGTAGTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCATATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTTTTTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAGAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACATGA--AAA-ATGGA-AGAAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCTCGTCAT-T--TGTCATTATTTATTATGGTNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNNNNNNN-NNNNNN--NNNNNNNNNNN---NNNNN-NNNNNNNNNNNTG-GATT---ATT------------------------ACTGCTGCGTACTCGTCCAATAGAATTTAGTATTG---------TACTCAACACTGTTAAATAACCT
gi|6 : TTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAATACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACTATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGATACTCACCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAAAACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACACGAATAAA-ATca
gi|6 : aGAAAAT--GCCGCAAAAAATACGA--AAAGAAAGACAGAAAATG-ACATTAAAACAT--TTTA-TCGATGGA--TAAAG---GAAA-ATTTACCGAGTGAAACACGAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCTTCAT-T--TGTCGTTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-ccgttatgtaaatggtacttttcccttcatttgtcgttatttattatggtgtgaaataaagaggtcatttaacagtgttgagtacaatactgaattcatttggactcgtacacagcagtaataatccatatttg
gi|7 : attatttcacacccgtatgatttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacggtttcttaatactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatccatattttttccatattggacgggactattcgtacgattttttacccttccgagtcgttcggagatactcaccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaatacaggagtttttagctACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTT-TTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCAATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAATATACGAAAAG---------AAAT-ACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGT
gi|7 : AAATACACAT-ATGACATAATCTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatatcacgtaaatacacatatgacataatctttatgaaaaataggaaattttcaaattgtcaataaaatccgttatgtaaatggtacttttcccgtcatttgtcattatttat
gi|8 : acacccgtatgatttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacggtttttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatcaatattttttccatattggacgggacaattcgtacgattttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaatacaggagtttttagctgaaaatgccgcaaaatatacgaaaagaaatacattaatacattttatcgatggataaaggaaaatttaccgagtttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatatcacgtACAA-TTTATTTCACACCCGTATGCTTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTTATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGTCGGGACAATTCGTACGATTTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTC---AAATT-GTACAGTTTTGTTATATCACGTAAATACACATATGACATAATTTTTA--TGAAAA
gi|8 : taaaAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATGAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCTATATTTG-GACT---ataggaaattttcaaattgtcaatgaaatccgttatgtaaatggtacttttcccgtcatttgtcattatttattatggtgtgaaataaagaggtcatttaacagtgttgagtacaatactgaattcatttggactcgtacacagcagtaataatctatatttggactc
gi|9 : taaaacaatttatttcacacccgtatgctttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgattttatatgcatttacggtttcttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatccatattttttccatattggtcgggacaattcgtacgatttttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtcaaattgtacagttttgttatatcacgtAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCTATAGTTG-GAc
gi|9 : -TTTATTTCACATCCGTATGCTTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAATATTGTACTGTACGATTTTATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGATTTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTC---AAATT-GTACAGTTTTGTTATATCACGTAAATACACATATGACATAATTTTTA--TGAAAAacgtgatataacaaaactgtacaatttgacgaaacactttatacaaggggagtaactccgaacgactcggaagggtaaaaaaatcgtacgaattgtcccgtccaatatggaaaaaatatggatttttgggatcgagtccaatacgaaaaaaatatggttttcttggattgtaggtttctgatgatgctattatagtcttaagaaaccgtaaatgcatataaaatcgtacagtacaatattggtttctattttatcgtcacgtgatgtaaacaaaagttttcaattggtttaaagcatacggatgtgaaataaatattgt
blockSeqs : A A T T T CATAT CAT C TGTGAA AT G C A T T CG TC CTG C AAACA TAC AGTC A AG TT GCAGCAGT TA TA T CTT C T CGC CGCCTCGTCAAAATATAGATTATT CATTAATTT
blockSeqs : C . T . T CATAT CAT . . . . . A . . . . . . . . . . . . . A . T T . . . . .
blockSeqs : A . T . . . . . . . . . A . . . . . . . . . . . . . T . C . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . A . T . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . G . T . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . T . T . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . T . N . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . T . T . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . N . T . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . T . T . . .
blockSeqs : . . . . . T . . . . .
blockSeqs : . . T . . . . .
blockSeqs : . . . . .
blockSeqCons :
originalCons : ATACNT-TTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACACGA--AAA-ATGGA-AGAAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-GATT---ATT------------------------ACTGCTGCGTACTCGTCCAATAGAATTCAGTATTG---------TACTCAACACTGTTAAATAACCT
finalCons : ATACNT-TTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACACGA--AAA-ATGGA-AGAAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-GATT---ATT------------------------ACTGCTGCGTACTCGTCCAATAGAATTCAGTATTG---------TACTCAACACTGTTAAATAACCT
Alignments
lowQualScore : 1 11111 111 111111 11111111 444444444444444444444444 222222222
lowQualScore : 1 8 0 3 7 88888 222 4 222222 77 5 6 7 3 3 55 55 555 3 88888 666 7777 3 55 44 0 00000000 33 33 0 1 777 3 0 3 777 888888888888888888888888 0 000000000 0
lowQualScore : . . . . . ..... ... . ...... .. . . . . . .. .. ... . ..... ... .... . .. .. . ........ .. .. . . ... . . . ... ........................ . ......... .
lowQualScore : 0 0 9 6 3 22222 777 4 888888 99 7 7 3 6 6 00 00 888 3 33333 444 7777 6 00 22 4 44444444 55 99 2 5 999 1 7 1 000 111111111111111111111111 4 000000000 1
consensus : ATACNT-TTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACACGA--AAA-ATGGA-AGAAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-GATT---ATT------------------------ACTGCTGCGTACTCGTCCAATAGAATTCAGTATTG---------TACTCAACACTGTTAAATAACCT
Reference ( family-621 ) : ATACNT-TTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACACGA--AAA-ATGGA-AGAAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-GATT---ATT------------------------ACTGCTGCGTACTCGTCCAATAGAATTCAGTATTG---------TACTCAACACTGTTAAATAACCT
gi|1 : ACCT-TTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCTATATTTTTTCCATATTGGACGGGACTTTTCGTACGA-TGTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAACACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACACGA--AAA-ATGGA-AGAAAATACACAT-ATGACATAATTTT-T--ATTAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATGAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTAC-GTGTGAA--ATAAAGAGGCCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TA-------------ATT---ATT------------------------ACTGCTGCGTACTCGTCCAATAGAATTCAGTATTG---------TTCTCAACACTGTTAAATAACCT
gi|1 : atcAAAATCCGTAAAGTAAATTACGGGACGAT----TCC-GT--------GT--TTAT--ATTATG---------------AGGTTATTTAACAGTGTTGAGAAC--------AATACTGAATTCTA-TTGGAC--GAGTACGCAGC---AGTAA-TAAT-------------T---ATT------------------------ACTGCTGTGTACGAGTCCAAATGAATTCAGTATTG---------TACTCAACACTGTTAAATGGCCTcataatataaacacggaatcgtcccgtaatttactttacggatttt
gi|10 : atcaccttttatttcacacccgtatgatttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacggtttcttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatctatattttttccatattggacgggacttttcgtacgatgttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaacacaggagtttttagctgaaaatgccgcaaaaaatacgaaaagaaagacagaaaatgacattaatacattttatcgatggataaaggaaaatttaccgagtgaaacacgaaaaatggaagaaaatacacatatgacataatttttattaaaaataggaaattttcaaattgtcaatgaaatccgttatgtaaatggtacttttcccgtcatttgtcattatttattacgtgtgaaataaagTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCGCGTGATGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAAACATATTTTTTTCGTATTGGACTCGATCCCAAAAATCTATATTTTTTCCATATTGGACGGGACAATTCATACGATTTTT-TTACCCTTCCGAATCATTCGGAGTTA-TCCCCTTGTATAAAGTGTTTCGTCTGCCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATCAATACATTTTATCGATGG------ATAAAGGAAAATTTATCGAGTGAAACACGA--AAA-ATGGA-AG-AAATAC-CAC-CT-CCACAAC--------TGAATCAAATACTGAGAACATTTT----TTG-----TC---AAAATC
gi|11 : taataaataaaagttaTTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-GAagg
gi|11 : cgATATATATTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACAATAAAATATAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGAATATAATAGCATCATCAGAAAC-----------------CATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGTAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AG-TTTTAGCGGCA-----TGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATT-ATGGTGTGAAATAAAGatgtattaatgtcattttctgtctttcttttcgtattttttgcatgccgctaaaactcctgtatttcgtcatttgtcaacatttttctaactaccagacgaaacactttatacaaggggagtaactccgaacgactcggaagggtaaaaaatcgtacgaattgtcccgtccaatatggaaaaaatatggatttttgggatcgagtccaatacgaaaaaaatatggtttctgatgatgctattatattcttaagaaaccgtaaatgcatatgaaatcgtacagtacaatactggtttatattttattgtcacgtgatgtaaacaaaagttttcaattggtttaaatcatacgggtgtgaaataaatatatatatctgttat
gi|12 : cgtccaaatatggattattactgctgtgtacgagtccaaatgaattcagtattgtactcaacactgttaaatgacctTA---AGAA-ATTTCAAAATTA-----TTTATAAAAGACGACATGT--------GTACATTAGTCTCTTGTCACATAGTGT-GTGAATTATGATGATGTGAA--ATAAAGAGGTTACT-AACGGGATTGAGAAC--------AATACTGAAATCAA-TTGGACTATCA-AAATGACT--ACCAACTCATCCAAATAAG-GAT---------------------------------TGCT------TCATCCAATTAAATTTAGTATTACATTAATTTTACTCA----TGTTAAAatctgttat
gi|13 : atGTGAGTTATAAAGAGGGT-TTTAACAGTGTTCAATAC--------AATACTGACTTCAG-TTTGAC--T-------AGC---AGGTA-TATGCCATATTTGTAATT---ATC------------------------A
gi|14 : acgagtcatatagaatcAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTtatcagctttttaggaaaaatcttatcggtcatttttt
gi|15 : actgacttataaattagtgtttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatatcacgtTAAAGAAATGATTGAACACTGTTAAGTAT--------ACGGCTG---TTATATTGGAC--TTGCATAC--CCTTAGAAA-TATTCCATATTTG-GATT---
gi|16 : TTATGATGTAGT--ATAAATAGAGCATT----AATGTTGAGTTC--------AATAATAAATTCA------AC--TTGTACACAGC---A
gi|17 : gtCTTGTCCAGTATAATTCAGTATTG---------TATTCAGCATTATTTAACAAC
gi|2 : CAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCAAATTGGACAGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGGAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCTCACAAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTataatta
gi|2 : AAATACACAT-ATGACATAATTTTTT--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GATACTTT----TCCCATCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAAGAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-GACTCGCATTCGCCTCGTCAAAATATAGATTATTACTGCTGCGTACTCGTCCAGTAGAATTCAGTATTG---------TACTCAACACTGTttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatgtcacgtaaatacacatatgacataattttttatgaaaaataggaaattttcaaattgtcaataaaatccgttatgtaaatgatacttttcccatcatttgtcattatttattatggtgtgaaataaagaggtcatttaagagtgttgagtacaatactgaattcatttggactcgtacacagcagtaataatccatatttggactcgcattcgcctcgtcaaaatatagattattactgctgcgtactcgtccagtagaattcagtattgtactcaacactgt
gi|3 : caattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacggtttcttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatccatattttttccaaattggacaggacaattcgtacgattttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttaggaaaatgttgacaaatgacgaaatacaggagtttttagctgaaaatgcctcacaaaaatacgaaaagaaagacagaaaatgacattaatacattttatcgatggataaaggaaaatttaccgagtttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatgtcacgtGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTAC-AT---------CTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACTATA-TTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCTTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGCAACACGA--AAA-ATGGA-AG-AAATAC
gi|3 : AAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-TTTTTCAAATTG-----TCAATAACATCCGTAATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTACGCAGCAGTAATAATACAT--AT-TTGGAC--GAG------GC---------TCGTCCAAATATG-GATT---ATT------------------------ATTTCTGTGTACGAGTCCAATAGAATTCAGTATTG---------cacctccacaactgaatcaattactgagttaattgttttcaaagttgaaaattgtagttttgttatatcacgtaaatacacatatgacataatttttatgaaaaataggaatttttcaaattgtcaataacatccgtaatgtaaatggtacttttcccgtcatttgtcattatttattatggtgtgaaataaagaggtcatttaacagtgttgagtacgcagcagtaataatacatatttggacgaggctcgtccaaatatggattattatttctgtgtacgagtccaatagaattcagtattg
gi|4 : gtatgatttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacatctataatagcatcatcagaaacctacaatccaagaaaactatattttttcgtattggactcgatcccaaaaatccatattttttccatattggacgggacaattcgtacgattttttacctttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaatacaggagtttttagctgaaaatgccgcaaaaaatacgaaaagaaagacagaaaatgacattaatacattttatcgatggataaaggaaaatttaccgagtgcaacacgaaaaatggaagaaataccacctccacaactgaatcaattactgagttaattgttttcaaagttgaaaattgtagttttgttatatcacgtATATCT-TTTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACAAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAAC-ATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGACAGTTAGAAAAATGTTGACAAATGACC-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACATAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACAGAGTGAAACACGA--AAA-ATGGA-AGAAAATACACAT-ATGACATAGTTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-GATT---ATT------------------------ACTGCTGTGTACTCGTCCAATAGAATTCAGTATTG---------TACTCAACACTGTTAAATAACCT
gi|5 : AAAACTTTTGTTAACATCACGTGACGATAAAATAGAAACCAGTAGTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCATATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTTTTTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAGAGAAAGACAGAAAATGACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACATGA--AAA-ATGGA-AGAAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCTCGTCAT-T--TGTCATTATTTATTATGGTNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------NNNNNNNNNNNNNN-NNNNNN--NNNNNNNNNNN---NNNNN-NNNNNNNNNNNTG-GATT---ATT------------------------ACTGCTGCGTACTCGTCCAATAGAATTTAGTATTG---------TACTCAACACTGTTAAATAACCT
gi|6 : TTATTTCACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTTCTTAATACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACTATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGATACTCACCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAAAATACGAAAAGAAAGACAGAAAATGACATTAAAACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGTGAAACACGAATAAA-ATca
gi|6 : aGAAAAT--GCCGCAAAAAATACGA--AAAGAAAGACAGAAAATG-ACATTAAAACAT--TTTA-TCGATGGA--TAAAG---GAAA-ATTTACCGAGTGAAACACGAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCTTCAT-T--TGTCGTTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCCATATTTG-ccgttatgtaaatggtacttttcccttcatttgtcgttatttattatggtgtgaaataaagaggtcatttaacagtgttgagtacaatactgaattcatttggactcgtacacagcagtaataatccatatttg
gi|7 : attatttcacacccgtatgatttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacggtttcttaatactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatccatattttttccatattggacgggactattcgtacgattttttacccttccgagtcgttcggagatactcaccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaatacaggagtttttagctACACCCGTATGATTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTCATATGCATTTACGGTTT-TTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCAATATTTTTTCCATATTGGACGGGACAATTCGTACGA-TTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTCTGGCAGTTAGAAAAATGTTGACAAATGACG-AAATACA-----GG---AGTTTTTAGCTGAAAATGCCGCA-AAATATACGAAAAG---------AAAT-ACATTAATACATTTTATCGATGG------ATAAAGGAAAATTTACCGAGT
gi|7 : AAATACACAT-ATGACATAATCTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatatcacgtaaatacacatatgacataatctttatgaaaaataggaaattttcaaattgtcaataaaatccgttatgtaaatggtacttttcccgtcatttgtcattatttat
gi|8 : acacccgtatgatttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgatttcatatgcatttacggtttttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatcaatattttttccatattggacgggacaattcgtacgattttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtctggcagttagaaaaatgttgacaaatgacgaaatacaggagtttttagctgaaaatgccgcaaaatatacgaaaagaaatacattaatacattttatcgatggataaaggaaaatttaccgagtttcgatagtttattgttttcaaagttgaaaattgtacagttttgttatatcacgtACAA-TTTATTTCACACCCGTATGCTTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAGTATTGTACTGTACGATTTTATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGTCGGGACAATTCGTACGATTTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTC---AAATT-GTACAGTTTTGTTATATCACGTAAATACACATATGACATAATTTTTA--TGAAAA
gi|8 : taaaAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATGAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCTATATTTG-GACT---ataggaaattttcaaattgtcaatgaaatccgttatgtaaatggtacttttcccgtcatttgtcattatttattatggtgtgaaataaagaggtcatttaacagtgttgagtacaatactgaattcatttggactcgtacacagcagtaataatctatatttggactc
gi|9 : taaaacaatttatttcacacccgtatgctttaaaccaattgaaaacttttgtttacatcacgtgacgataaaatagaaaccagtattgtactgtacgattttatatgcatttacggtttcttaagactataatagcatcatcagaaacctacaatccaagaaaaccatatttttttcgtattggactcgatcccaaaaatccatattttttccatattggtcgggacaattcgtacgatttttttacccttccgagtcgttcggagttactccccttgtataaagtgtttcgtcaaattgtacagttttgttatatcacgtAAATACACAT-ATGACATAATTTT-T--ATGAA--AAATA---GGAA-ATTTTCAAATTG-----TCAATAAAATCCGTTATGTAAAT---GGTACTTT----TCCCGTCAT-T--TGTCATTATTTATTATGGTGTGAA--ATAAAGAGGTCATTTAACAGTGTTGAGTAC--------AATACTGAATTCAT-TTGGAC--TCGTACACAGC---AGTAA-TAATCTATAGTTG-GAc
gi|9 : -TTTATTTCACATCCGTATGCTTTAAACCAATTGAAAACTTTTGTTTACATCACGTGACGATAAAATAGAAACCAATATTGTACTGTACGATTTTATATGCATTTACGGTTTCTTAAGACTATAATAGCATCATCAGAAACCTACAATCCAAGAAAACCATATTTTTTTCGTATTGGACTCGATCCCAAAAATCCATATTTTTTCCATATTGGACGGGACAATTCGTACGATTTTT-TTACCCTTCCGAGTCGTTCGGAGTTACTCCCCTTGTATAAAGTGTTTCGTC---AAATT-GTACAGTTTTGTTATATCACGTAAATACACATATGACATAATTTTTA--TGAAAAacgtgatataacaaaactgtacaatttgacgaaacactttatacaaggggagtaactccgaacgactcggaagggtaaaaaaatcgtacgaattgtcccgtccaatatggaaaaaatatggatttttgggatcgagtccaatacgaaaaaaatatggttttcttggattgtaggtttctgatgatgctattatagtcttaagaaaccgtaaatgcatataaaatcgtacagtacaatattggtttctattttatcgtcacgtgatgtaaacaaaagttttcaattggtttaaagcatacggatgtgaaataaatattgt