lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111 33333333333333333333333 111111
lowQualScore : 55 1 33 3333333 222222222 2222222222222 5555555555555555555 11111 11111111 1 2222 111111111 4444444444444444444444444 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3333333333333 111 11 44444444444444444444444444444444444 111 1 55555555555555555 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222222 1 1 11 1 111 1 777777777777777777777777 11 1 1 222222 2222 222 11 222 33333333 11 1 1 1 1 77777777777777777777777 33 1 1 111111 1 1 44 55 1 22 1 33333 66666666 11111 11 7777777777777777 1 888888
lowQualScore : 6 55 6 5 00 0000000 4 444444444 777777777 1 0000000000000 33 33 888888888888 2 9999999999999999999 88888 6666 2 1 22222222 4 2 2 1 77777 9999 1 999999999 2222222222222222222222222 1 444 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 33 2 2 5555555555555 333 777777 444 7777 66 4 7 77777777777777777777777777777777777 5 2 77 2 333 33 5 33333333333333333 3 2 2 33 9 99 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 444 33333333 7 4 2 2 77 2 2 4 11 2 666 6 88 3 4 4 333333333333333333333333 2 33 1 7 8 3 3 3 9 4 9 777 444444 8888 3 555 11 555 00000000 6 6 22 0 5 5 6 5 6 6 6 00000000000000000000000 22 6 6 5 6 5 555555 6 5 6 6 6 7 66 55 6 7 6 2 33 2 3 5 55 11111 6 6 99999999 88 6 6 55555 6 2 22 8888888888888888 3 4 5 6 4 666666
lowQualScore : . .. . . .. ....... . ......... ......... . ............. .. .. ............ . ................... ..... .... . . ........ . . . . ..... .... . ......... ......................... . ... ...................................................................................................................................... .. . . ............. ... ...... ... .... .. . . ................................... . . .. . ... .. . ................. . . . .. . .. ........................................................................................................ ... ........ . . . . .. . . . .. . ... . .. . . . ........................ . .. . . . . . . . . . ... ...... .... . ... .. ... ........ . . .. . . . . . . . . ....................... .. . . . . . ...... . . . . . . .. .. . . . . .. . . . .. ..... . . ........ .. . . ..... . . .. ................ . . . . . ......
lowQualScore : 0 00 0 0 55 9999999 2 888888888 666666666 9 7777777777777 77 77 777777777777 9 1111111111111111111 88888 1111 7 2 33333333 9 9 9 3 11111 1111 4 666666666 2222222222222222222222222 8 777 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 44 5 5 0000000000000 000 777777 777 9999 22 2 4 11111111111111111111111111111111111 3 7 33 7 000 77 5 11111111111111111 6 7 7 77 9 00 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 777 99999999 0 3 7 8 11 9 9 9 88 6 111 9 22 3 3 7 222222222222222222222222 1 22 4 0 2 6 6 6 2 0 3 111 222222 2222 8 000 00 888 22222222 0 0 00 5 0 0 0 0 0 0 0 00000000000000000000000 00 0 0 0 0 0 000000 0 0 0 0 0 0 00 00 0 0 0 5 00 5 0 0 55 55555 0 0 55555555 00 0 0 55555 0 5 00 0000000000000000 0 0 0 0 0 000000
consensus : GTTACCTTTTCGACCGATGATATACCAANAT--TGCGATTTATGTTTTCGACCGAGTA--AT---AC---------GGTAT-TCGACC----------GA--G--A--G--GT-----ACTGTCTTCGACAGA-CGCA-----TTTT--AT-N--AGGGTTACTGAC----TTTAAAGGTATTATTTTT--------CATGAAATAAATAT-G-AATA-----TACACGATA-TNAGTCGCAAAA--------GTTT-A-----A----------T--A-N-ACATAA---ATAT-----A----------A------T-------------------AGG--TA--------C---------N-----GN----TT--T------TA----TG--T---T------------GTNT-----G--T--GTT--GTTATTG-TA-TA------T-----TTAAC-GACGAACA------CTA---GTG---GAATTGCAAAAACT-TCGTTTTCATCAAGAAAA----TG-TGA--ATT-TATTGT-----TAAA-AA-A--TCAGA-AATTAAATGTTNA-AT--ACAATGT-TT-------TT-T-A-TGTATTTCGC-ATAAA-A--CATTTG--AAT--------AA--------------CAA--------------TGCAATAGT---------TTCGA---------AN----------GTAT----------A----TTTCCTGTG---AT-A------CGGTTTTCGACGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCGATACTCATTCAGGAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTTGCGTAATATCTA-GAATCTTTAATG-A-TC-ATTTAAA-GACGTTTTCACATT-ATA-TAA-TACATTTTGTANTACTTAAACTGC--CAT-TCTG-CTTATCATGCANATAGCCTGTCT--CAA--AGTGCATAGATTTATAATGATATAAATAGTGCATGNAATGTAATTTGCATCTCATTTTCGTAGTCAGTGTTGCATTTTCTCATATCAGTTGATTTATACTTCTATTCATGTATAAACATTTGTAAAAAGTAAACGTCATAATCTTGTGC-----------------------GTGTTACACAGGAGTGTGTCAGCCTCCGATATTAATAATTTAATATCTACACTTGTGCACAAACATACTAATTCGAGCTCATAAAGCAGAGAAGGTATTTATTATTATTTAAATTATTGCAATTTATTCTATTTTTATAAAATTAATGTCG--AATGCTTGTTAATGAAATTTAAATACTCTTTTNGAGTNCANTTNATCTTTGACCGNGCTGTGCCGCNGTATATGAATATTGTCGTTTTANTACAAAAAGTAGACGATNNCAGTACATATCCTGTGTACGTCATCGAATGAGAACTAAGAAGTGATAGATCTATCATCACGTNNGATGAAGCNTCGATGACAAGTTCAGTTTTTACAAGTTTCNCATATTTAACTGNATAACTGGGGACATCGNAAGCAATTATT----TTTTAGATC
Reference ( gi|1 ) : GTCAC--TTCCGAACGCTGATATACCCGAAC--TGTGATTTATGTTTTCGACCGAGTA--AT---AC---------GGTAT-TCGTCC----------GA--G--A--G--AT-----ACTGTCTTCGACAGA-CGGA----ATTTT--A--A--AGGGTAAGTAAC----TTTGAAGGTATTATTTTT--------CATGAAATAAATGT-G-AAAA-----TACACGATA-TACGTCGCAAAA--------ATTT-G-----A----------T--A-A-ACATAA---ATAT-----A----------A------T-------------------AGG--TA--------C---------A-----GA----TT--T------TA----TG--T---T------------GTCT-----G--C--GTT--GTTATTG-TA-T-------T-----TTAAC-ACCGAACA------CTA---GTA---GAATTGCAAAAACT-GCGTTTTTATCAAGTAAA----TG-TAAACAGT-TATTGCCTTTCTACA-AA-A--TCAGA-AATTAAATGTTTG-AT--AGAATGT-TTG------TT-T---TGTATTTTGC-ATAAA-A--CAATTG--AAT--------AA--------------CAA--------------TACA--------------TTCAA---------AA----------ATAC----------A----TTTCCTATG---AT-T------CGATGTTGGACGTTGTTTAAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCAATACTCATCCAGGATTTGTGTATACATTCTGTT-GATGAATAAAA-TGTATTCGCGTAATATTTAAAAATTCTTAATG-A-TCGATTTAAA-AATGTTTCCACA-T-ATA-TAA-TACATTTTGAAATACTTATACTGC--TAT-CCCG-CTT-TCTTGCATATAGCCTGTCT--CAG--AGTGCATACATTTATAATGATACAAACAGTGTGTGAAATGTAATTTGCATCTCATTTTCGTAGTCAGTGTTGCATTGTCTCATATCAGTTTATTTATATTTCTATTCATTTGTAAACATTTGTAAAAAATAAACATCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACAGTGGAGTATATCAGCATCCGATATTAATAATTTAATATCTACACTTATTCACAAAC------ATTCGGGCTCATAAAGCAGACAGGGTATTTATTATTATCTAAATTATTGCAATTTATTTTATTTATATAAAATC-ATGTCGAAAATGCTTATTAATGAAATTAAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGT-ACT-TGTATGAATATTGTTGTTTTAATAGGAATAGTAGATGATTTCAGTACATATCCTGTATATGTTACCGAACGAGAACTAAGAAGTGATAGATCTATCATCATGCGTGATAAAGCCTTAATGACAATTTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGTGACACCGAAAGCAATTACTAGTTTTTTAGATC
gi|11 : GTTACCTTTTCGACCGA-GACGTACTCG--C--T----TTCAGGTTTTCGACCGAG----AT----C---------GGCAT-GCGACC----------GA--G--A--T--GT-----ATTGTTTTCGACAGG-CGCA------TTT--A--ATCAGGGTTACTGAC----TTTAAGGGTATTATTTTT--------CATGAAATATAAGT------A-----TACACAATACTA-GTAACAAAA--------GTTTGG-----A----------T----A-ACATAA---ATAA-----A----------A------TTTATACGAATTATACTGGCAGGCCTA--------C---------T-----GT----TT--T------TA----TGGCT---T------------GTGT-----C--T--GTT--GTTATTG-TA-TA------T-----TTAAC-GGCGAACA------CTA---GTA---GAATTGCAAAAGCT-TCGTTTTCAACAAG-AAA----TG-TGA----TGTGTTG------TAAAGAA-A--TCAGA-AATTAAATGTCAA-AT--ACAACGT-AT-------TT-TGA-TGTATTTCGCAAAAAA-A--CATTTG--AAT--------AACATTGCAATAGTTTCAA--------------TATA--------------TTCGA---------AT----------ATAA----------A-----TTCTTGTG---AT-A------CGGTTTTCGACGTTACTGGAAAAGTACGGGTTCGGTTTTTTGTCAT-TGATTGCTACGGTATTCGATACTCTTTAAGGAATTGT
gi|5 : gtggataggcctatattgtgaTGATATAC--AAACATTACGATTTATG--TTCGACCGAG---------AC---------GGTAC-TCG
gi|4 : GATATACAAAAAT--TGCGATGTATGTTTTCGACCGAGctctcacgtttcgactgagtaatacgatcttcgacagagagttactgtcttcgacagatgcatttaataagggttactggcttcaaaagtattatttttcatcaaataaatatgaatatacactatattagtaacaaaaatttaatttacataaatatagtgtatatgcatatgtatgtaccatttttatgttgtgtgtctgttgttattgtatatttaacgacgaacacatagtctagtggaattgtaaaaacttcgaaaactaaatgttaaatacaatgtgtttgaatgaatttcgcataaaacattcgaaaaacattgcaatagtttcaatacagtcaaatgtaagttttctgtgatacggttttcgacataagtagaaaatggccggtacggttttcgtcattgattgatacggttttcgattctcattcaggaattgtatttatattttgtaagtgaataaaatgtttttgcgtaatatcaatgaatctttaaatacgtttttacattatataatacatcttgtattacttaaactgccataccgacttaccatgcagatatgtcttcaaacaatcattgtgacttatatgttcttcacaatcataataaattcttatatttccgtgcgcgagtccatccgatcatgtccgttcgagaactttctcacacgt
gi|3 : atgGATATACC--AATA-TGCGATTTATGTTCTCGACCGAG---------AC---------GGTAC-TCGacggtatacgctctcaggttttcgaccgagtaatacggtattctttcgagatgtattgtcttcgacagacgaattttattagggtaagtgttttttaaggtataattttcatgaaataaatatgaaaatacacgatattagtcgcaaaattttaatatacgtaaatataatgtacaaatatgcattatataggtactattatttttacaccgaacactagtagaatggcaaaaacttgcgttttcatgaaatgttattaattttaaaaaatcagaaattaaatgtttaatacaatgttattattgtattttgcataaaacaattgaatgacaagtcaatattttctatatattcgaatatgttttttccatgatacgtttttcgacgttgaaaaatggacggtacggttttcgttattgattgatacgattttcaatactcatccaggatttgcatatacattctttttatgaataaaatgtttttgcgttatatttaagaatctttaatgttcgattacaacatgtttccacatatataatacattttgaaatacttaaactgctatcctgctttcatgcatgtagcctgcctcagaatgcatagatttataataatataaatagtgcatgcaatgtaatttgcatcttattttcgtagtcagtgttgcattttcttatatca
gi|12 : tgGATATACCAATAT--TGCTATTTATGTTTCTGACCGAA---------AC---------GGTAC-TCGctttcagggtttcgaccaagtgatgatacgatatttgagtaagatgtactactgtctccgacagacacattttatcagaattattgactttgaaggtactatttttcacgataaaaatatgaatatacacgatatttgtcacaaattgtttaaatacataaatagaatgtatatgaatgatgtgagtactgtgtttgtggggtttgtatgttgtaattgtataactaactacaaacataagtgaaactgcaaaaacttttgtaatttattttaaaaaatcggaaatcgaatgtttaaaacaatgtattgttttgtatttcgcataaaacatttgaattaaaatgcaatagtttcaatatattcgaattcatatttcaaatgatacggtataaggcgttattggaaaaggacggaacggttttcgtcattgattgatattacattcggtactcatcatggaattgtacttacattttgctgatgagcaaaactaaatttgcttaatgatcatgaatctttaatggtcgatttaagacgttcccacatatacagtacattttgtaatccttagactgccatatctacttgtcatacacatacatcttcaaacattgcattgtaacctatgatcttcgaccacataaatatagtatctgttactggcattgttttataaattctttgtcgttttccatttgttcataccgt
gi|9 : GATATACCAATAT--TGCAATTTATGTTTTTGACCGAG-ACTGT---ACTCGCTTTCAGGTTT-TTGACA----------GA--G--A--G--AT-----ACTGTCTTTGACAGA-CGCA-----TTTT--AT-C--AGGGTTACCGAC----TT--AAGGTATTATTTTTTTATTTTTCATACAATACACAC-G-AATA-----TACACAATA-TTAGTCATAAAA--------GTTA-C-----A----------T--A-A-ATATAATGTATATCGATGA----------A------TTATGT--------------AGG--TT--------T---------T-----GT----TT--T------TA----TG--G---T------------GTGT-----G--TCTGTT--GTTATTG---------------------AC-A---AACT------CTA---GTG---GAATTGCAAAAActctcagattttcaaccgagtaatacggatatcgaccgatagatactgtctttgacaggcgaatttcattttgattactgactttaacagttttattgttcctgaaataaatatgaatatacacgatattagtcacaaaataagttcaaattgcatatataaaatgtatatgaattatgtaggtactgttttaatgttttatggcgtgtgtctgttgttattgcatattcaacggcgaacactagtgaaatagcaaaaacttcattttcatcaagaaaatttgatttattgagaaaaagagagaaattaaatgatgaatacataatattttaatgaatttcgcataaaacatttgaatatcaatgcaacagtttcaatatattcga
gi|24 : ATATACCAGAAC--TGCGATTTATGATTTCGACCGAG---------AC---------GGTTC-TCGaaaatcagaacttgagtgttaaatttatgtattgatatattttaatgtctttcgcataaaacatttgaataacaatgcaatagtttaattatattagaatgtatatttcctacgatatggttttcaaagttattggaaaatggccggtatggtttccgttgttgatacggtatacgatactcattcaggaatttgttaatgaacaaaatatttttgagtaatacctatgaatctttaaagatgtattcagattttataatacattttgtattacttaactgccatttctacatatcatgcagacatatcttcaaatagt
gi|17 : tATATACCAGCTT--TGTGCTTTATGTTTTCGACCGAGTctctcaggttttcgacagagtaatacggtattcgtaagagaggtattgtcttcggcagacacttttcataaaagtaagagactttgagggtattattttccatgaaataaatatgaaaatacacgatattagtcgcaa
gi|16 : tgcATATACCAATAT--TGCGATT-ATGTTTTCGACCGTG---------AC---------GGTAC-TCGcggtactcgcactcaagttttcgaccgagttgtacgctattcgatcgagatgtactgtctttgccggacgcattttatcagggctaacgactttgttcatgagataaatatgaatatacacgatattagacacacaatttttaaacacatagatagaatgtatatgacttatgtaggtatgtatgttcttattgtatatttaacaacgaatattagtaaaggaattgcaaaactttgttttcaaa
gi|30 : ATACCAATAT--TGCGATTTATGTTATCGACCG------AT---AC---------GGTAG-TCGctcttaagccggttatcgaccgattaatacgatattcgaccgaaaggtattgccttcgacagatgcatttcatcagggttactgactttaaataaaatgaacatgaatatacacgatagtagtcacaagagtttaaattacataaattgaatgtatattaattatgtttttattgtatatttaacgaccaacactagtataattgcaaaaacttcgttttagttttagtatttattttaaag
gi|8 : agtgtagAT--TGTGATTTATGTTTTCGACCctct
gi|7 : atgaatAT--TGCGATTTATGTTTTCGA-----------------------------------CC----------GA--G--ATGG--A------ACGG-----AACAGAACAGA----ATTTT--AT-C--AGGGTTAATGAC----TTTAAAGGTATTATTTTTT-------CATAAAATAATTAC-G-AATA-----TACA--ATA-TTAGTCATAAAA--------GTTT-A-----AAT--------T--ACATACACAA---CTGT-----AT---------A------T-------------------GGA--TAATGTATGTT---------A-----TG----TT--T------TA----TG--G---T------------GTTT-----G--T--CTTTTGTTATTG-TA-TA------T-----TTAAC-GACGAATA------TAA---GTG---GAATTGCAACATCT-TCGTTTTCATTAAGAAAA----TC-T---TATT-TATTGTC-----AAA-AA-A--TCACA-AATTTAATATTAA-AT--ACAATGT-TTT------TTAT---TGTATTTCGC-GTAAA-A--CATTTG--AAT--------AA--------------CAA--------------TGCAATAGT---------TTCAA----------------------TAT----------A----TT-CGAATGTAAAT-TGTGACACGATTTCCGACGTTATTGAAAAGTGGCCGGTACTG-TTTTTGTCAT-TGATTGATACGGTAATCGATACTCATTCCGGAATTGTATTTAC---------------TAAAA-TGTTTTCGAGAAATATCT-----------ATG-A--------AAT-GACATTTTCACATT-ATA-TAA-TACATGCTGTATAACTTAAGCTGC--CAT-tagacggtacctgctagatcaggtttttgaccgagtaatacagtattcgaccgagagatactgtcttcgacagacgcatttgatattactttaaacattttatttttcatgaaataaaaattaatatacacaatataagtcaaaaaagtttaaaatacatcaatagaatgtatatgaattatgtaggtactgtttttatggtgtatgtttgttgttattgtataccagtttttaacgaagaacaattgtggaattgcaaaatcttcgttttcataaaaataagatttattgttacaaaaagtctgacattaactgttcaataaaatgtattttaatgtattttaatagcattgctaatgtttcaatatattcaaagggaaatttcctgtgatacggttttcgtcgttattggaaaatggccggtacggttttcgtcattgattgatacgatattcgatattcattcacaaattgtatttttatttttttcaatgaataacctattttgcgtaacatatatgagtctttaaaggatcatatatacattataaaatagtgatttt
gi|15 : atGATTTATGTGTTTGACCGAG---------GC---------GGTAC-TCGCTCTCAGGTTTTTGACTG--A--GTTAA-----ACGGTATTCGACCGA-GGGGTAC-ATTTTAAA--A--AGGGT--GTCACCTGTTTTG-ATGTA-TATGTTT--------CGTTAAatctatttaccatacagatatatcttcaaacagggcattgtgccttgtgttcttcaatcacaagcatatagtaccggag
gi|3 : tgattgtgcttttatggcttatataatgtcatgttccaacgaaagttgcatttccggccgggacctcgattaattaccaaatataattaccacagtgaataaaccaatattttcTTCAGGGTTTCGACCAAGTG--ATGATAC---------GATAT-TTG--------------A--GTAA--G--ATGTACTACTGTCTCCGACAGA-CACA-----TTTT--AT-C--AGAATTATTGAC----TTTGAAGGTACTATTTTT--------CACGATAAAAATAT-G-AATA-----TACACGATA-TTTGTCACAAATT-------GTTT-A-----A-------------A-T-ACATAA---ATAG-----A----------A------T---------------------G--TA--------T---------ATGAATGA----TG--TGAGTACTG----TG--T---TTGTGGG------GTTT-----G--TATGTT--GTAATTG-TA-T-------AA----CTAAC-TACAAACA------TAA---GTG---AAACTGCAAAAACT------TTTGT------AA----T---------T-TATT------TTAAA-AA-A--TCGGA-AATCGAATGTTTA-AA--ACAATGTATTG------TT-T---TGTATTTCGC-ATAAA-A--CATTTG--AATTAAAATGCAATAGTTT--------CAA--------------TATA--------------TTCGA---------AT----------TCAT----------A----TTTCAAATG---AT-A------CGGTATAAGGCGTTATTGGAAAA-GGACGGAACGG-TTTTCGTCAT-TGATTGATATTACATTCGGTACTCATCATGGAATTGTACTTACATTTTGCT-GATGAGCAAAACTAAATTTGCTTAATGATCATGAATCTTTAATG-G-TCGATTT-AA-GACGTTCCCACA-T-ATA-CAG-TACATTTTGTAATCCTTAGACTGC--CATATCTA-CTTGTCATACACATAggtgatttgtcatattttttttaaaagtaaataatagatatcgatatgatccagcgaatataagttc
gi|10 : tggatataccaatatgcgatttatgttctcgaccgagacggtactcgctTCATGTTTTCGACCAAGTA--AT---AC---------GGTAT-TCGACC----------GA--G--C--G--AT-----ACTGTTATCGACAGA-CGC------TTTT--T--ATCAGGGTAACTGAC----TTTAAAGGTATTATTTTT--------CATGAAATAAATAT-G-AATA-----TACACAGCAGTA-GTCGCAAAA--------GTTT-A-----AAT--------T--A-G-A--TTA---ATAG-----A----------A------T-------------------GCA--TA--------CGAATTATGTA-----GG----TT--C------TG----TG--T---TATGATGGTGTGTGTCT-----G------TT--GTTATTG-TA-TA------T-----TTAAC-GACAAACT------CAA---GGG---GAACTGCAAAAACT-TCGTTGTCATAAAGAAAA----TG-TGA---TT-TATTGTA-----AAA-AA-A--TCATA-ACTTAAACGTTAA-AT--ACAATGT-AT-------TT-TAA-TGTATTTCGC-ATAAA-A--CAATTG--AAT--------AA--------------CAA--------------TGCAATAATTTCGATATATTCGA---------AG----------GTAA----------A----TTTTCTGTG---AT-A------CCGT-TTCGACGTTATTGGAAATTGGCCTGTAAGG-TTTTCGTCAT-TGATCGATTGGGTATTCGAT--------------TGTATTTACATTTTGTT-AATGAATAAAA-TGTTTATGCGTAATATCT-----------ATGCA-T--ATTTAAA-GATGTTTTCACA-TCATA-TAA-TACATTTTGcatcttcaaacattgcattgtaacctatgatcttcgaccacataaatatagtatctgttactggcattgttttataaattctttgtcgttttccatttgttcataccgt
gi|4 : ggtataccaaaattgcgttttttactgtacatgcccGTTTTCGACCGAGTA--AT---AC---------GGTAT-TCTTTC----------GA--G--A--T--GT-----ATTGTCTTCGACAGA-CG-A----ATTTT--A--TT-AGGGTAAGTGTT----TTTTAAGGTATAATTTT---------CATGAAATAAATAT-G-AAAA-----TACACGATA-TTAGTCGCAAAA--------TTTT-A-----A----------T--A-T-ACGTAA---ATAT-----A----------A------T---------------------G--TA--------C---------A-----AA----T-----------A----TGCAT---T------------ATAT-----A--G--GT---ACTATT---A-T-------T-----TTTAC-ACCGAACA------CTA---GTA---GAATGGCAAAAACTTGCGTTTTCATGAAAT----------------GT-TATTAATTTT--AAA-AA-A--TCAGA-AATTAAATGTTTA-AT--ACAATGT-T-A------TTAT---TGTATTTTGC-ATAAA-A--CAATTG--AAT--------GA--------------CAAGTCAATATTTTCTATATA--------------TTCGA---------AT----------ATGT----------T----TTTTCCATG---AT-A------CGTTTTTCGACGTTG---AAAAATGGACGGTACGG-TTTTCGTTAT-TGATTGATACGATTTTCAATACTCATCCAGGATTTGCATATACATTCTTTT-TATGAATAAAA-TGTTTTTGCGTTATATTTAAGAATCTTTAATG-T-TCGATTACAA-CATGTTTCCACA-T-ATA-TAA-TACATTTTGAAATACTTAAACTGC--TAT-CCTG-CTT-TCATGCATGTAGCCTGCCT--CAG--AATGCATAGATTTATAATAATATAAATAGTGCATGCAATGTAATTTGCATCTTATTTTCGTAGTCAGTGTTGCATTTTCTTATATCAta
gi|8 : atggatatacaaaaattgcgatgtatgttttcgaccgagacggtatacgctctcagGTTTTTGACCGAGTA--AT---AC---------AGTAT-TCGACC----------GA--G--A--G--AT-----ACTGTCTTCGACAGA-CGCA------TTT----------GATA--TTAC----TTTAAACATTTTATTTTT--------CATGAAATAAAAAT-T-AATA-----TACACAATA-TAAGTCAAAAAA--------GTTT-A-----A----------A--A-T-ACATCA---ATAG-----A----------A------TGTATATGAATTATGT----AGG--TA--------C---------T-----GT----TT--T------TA----TG--G---T------------GTAT-----G--TTTGTT--GTTATTG-TA-TACCAGTTT-----TTAAC-GAAGAACA------ATT---GTG---GAATTGCAAAATCT-TCGTTTTCAT-AA--AAA----T----AAGATT-TATTGT-----TACA-AA-AAGTCTGA-CATTAACTGTTCA-AT--AAAATGT-AT-------TT-TAA-TGTATTTTA--ATAG-----CA-TTGCTAAT--------GTTT------------CAA--------------TATA--------------TTCAA---------AG----------GGAA----------A----TTTCCTGTG---AT-A------CGGTTTTCGTCGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGATATTCGATATTCATTCACAAATTGTATTTTTATTTTTTTCAATGAATAACC-TAT-TTTGCGTAACAT------AT-----ATG-AGTC--TTTAAAGGAT-------CA-T-AT----A-TACATTATAAAATA
gi|24 : atgaatattgtgatttatgttttcgacctagacggtacctgctagatcagGTTTTCGACAGAGTA--AT---AC---------GGTAT-TCGTAA----------GA--G--A--G--GT-----ATTGTCTTCGGCAGA-C--A----CTTTTC-AT-A--AAAGTAAGAGAC----TTTGAGGGTATTATTTTC--------CATGAAATAAATAT-G-AAAA-----TACACGATA-TTAGTCGCAAgtgatttt
gi|17 : tatataccagaactgcgatttatgatttcgaccgagacggttctcgctctcagGTTTTCGACCGAGTT--GT---AC---------GCTAT-TCGATC----------GA--G--A--T--GT-----ACTGTCTTTGCCGGA-CGCA-----TTTT--ATCA--GGGCTAA-CGAC----TTTG------------TT--------CATGAGATAAATAT-G-AATA-----TACACGATA-TTAGACACACAA--------TTTT-T-----A----------A--A-C-ACATAG---ATAG-----A----------A------T---------------------G--TA--------T---------AT----GA-----C--T------TA----TG--TAGGT------------ATGT-----A--T--GTT--CTTATTG-TA-TA------T-----TTAAC-AACGAATA------TTA---GTAAAGGAATTGC-AAAACT-TTGTTTTCA
gi|16 : tgcatataccagctttgtgctttatgttttcgaccgagtcggtactcgcactcaaGTTATCGACCGATTA--AT---AC---------GATAT-TCGACC----------GA--A--A--G--GT-----ATTGCCTTCGACAGA-TGCA-----TTTC--AT-C--AGGGTTACTGAC----TTTAAA----------------------TAAAATGAACAT-G-AATA-----TACACGATAGTA-GTCACAAGA--------GTTT-A-----A----------A--T-T-ACATAA---ATTG-----A----------A------T---------------------G--TA--------T---------A---------------T------TA-----A--T---T------------AT-------------GTT--TTTATTG-TA-TA------T-----TTAACGACC-AACA------CTA---GTA---TAATTGCAAAAACT-TCGTTTTaa
gi|15 : atataccaatattgcgattatgttttcgaccgtgacggtactcgctcttaagccgGTTTTTGACTGAGTT--AA---AC---------GGTAT-TCGACC----------GA--G--G--G--GT-----ACagttttagtatttattttaaag
gi|12 : tgattgtgcttttatggcttatataatgtcatgttccaacgaaagttgcatttccggccgggacctcgattaattaccaaatataattaccacagtgaataaaccaatattttcgatttatgtgtttgaccgaggcggtactcgctctcagTTTTCAACCGAGTA--AT---AC---------GG-ATATCGACC----------GA--T--A--G--AT-----ACTGTCTTTGACAGG-CGAATTTCATTTT----------GATTACTGAC----TTTAACAGTTTTATTGTT--------CCTGAAATAAATAT-G-AATA-----TACACGATA-TTAGTCACAAAATAAGTTCAAATT-GCATATA----------T--A-A-A-ATGT---ATAT-----G----------AATTATGT-------------------AGG--TA--------C---------T-----GT----TT--T------AA----TG--T---TTTATGGCGTGT-GTCT-----G------TT--GTTATTG-CA-TA------T-----TCAAC-GGCGAACA------CTA---GTG---AAATAGCAAAAACT-TCATTTTCATCAAGAAAA----TT-TG---ATT-TATTG-------AGA-AA-AAGAGAGA-AATTAAATGATGA-ATACATAATAT-TT-------TA-A---TGAATTTCGC-ATAAA-A--CATTTG--AAT--------AT--------------CAA--------------TGCAACAGT---------TTC------------A----------ATAT----------A----TTattttaaaaagggtgtcacctgttttgatgtatatgtttcgttaaggtgatttgtcatattttttttaaaagtaaataatagatatcgatatgatccagcgaatataagttc
gi|5 : gatataccaatattgctatttatgtttctgaccgaaacggtactcgctctcagaTTTCGACTGAGTA--AT---AC---------GATCT-TCGACA----------GA--G--A--G--TT-----ACTGTCTTCGACAGA-TGCA------TTT--AATA--AGGGTTACTGGC----TTCAAAAGTATTATTTTT--------CATCAAATAAATAT-G-AATA-----TACACTATA-TTAGTAACAAAA--------ATTT-A-----A----------T--T-T-ACATAA---ATAT-----AGTGTATATGCA------T-------------------ATG--TA--------T---------G-----TACCATTT--T------TA----TG--T---T------------GTGT-----GTCT--GTT--GTTATTG-TA-TA------T-----TTAAC-GACGAACACATAGTCTA---GTG---GAATTGTAAAAACT-TCG-----A-AAACTAAA----TGTTAAATA---CAATGTGTTT---------------GA-A--TGAAT-TTCGCAT--AAAACAT-TCG----------------A---------AAA-A--C-ATTGC-AAT--------AGTTT-----------CAA--------------TACA--------------GTCAA---------AT----------GTAA----------G----TTTTCTGTG---AT-A------CGGTTTTCGACATAAGTAGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTTTTCGATTCTCATTCAGGAATTGTATTTATATTTTGTA-AGTGAATAAAA-TGTTTTTGCGTAATA-----------TCAATGAA-TC--TTTAAA-TACGTTTTTACATT-ATA-TAA-TACATCTTGTATTACTTAAACTGC--CAT-ACCGACTTACCATGCAGATA---TGTCT--cga
gi|6 : tgatatacaaacattacgatttatgttcgaccgagacggtactcgctctcacg---AC---------GTTAT-TCAAGC----------GA--G--A--T--A------ACTGTCTTCGACAGA-CGCA-----TTTT--AT-C--AGGGCTACTGAC----ATTAAAGGTATTATTTTT--------CATGAAATGACTATCGCAAAAGAATGTATATGAAT-TATGTAGTTACT--------GTTT-T-----A----------TGNN-N-NNNNNN---NNNN-----N----------N------N-------------------NNN--NN--------N---------N-----NN----NN--N------NN----NN--N---N------------NNNN-----N--N--NNT--GTTATTG-TA-TA------T-----TTAAC-GACGAACA------ATA---GT---------GCAAAAACT-TCGTTTTCATCAAGAAAA----TG-T---TTTT-TATTG------TAAATAA-A----AGA-AGTTGAATGTTTA-AT--ACAATGT-AT-------TT-TAA-TGTATTTCAC-ATAAA-A--CGTTTGA-AAA--------AA--------------CAA--------------TGCAGTGGT---------TTCAATATAATC--GA----------ATGT----------AAATTTTTTCTGTG---AT-A------CGGTTTTCGATGTTATTGTAAAATGGCCGGTACGG-CTTTCGTTAT-TGATTGATACGGTATTTGATATTCATTTAGAAATTGTATTTTCATTTTGTT-AGTAAATAAAA-TGATTTTGCGTTATATCTA-------TGAATC-A------TTAAA-GACGTTTTCACATT-ATATTAATTAT-TTTTGTATTACTTAAACTGC--CATATCTA-CTTACCATGCAGATA-CATAT-T--CAAACAGTGCATtcaaacaatcattgtgacttatatgttcttcacaatcataataaattcttatatttccgtgcgcgagtccatccgatcatgtccgttcgagaactttctcacacgt
gi|26 : --------CATG---TAAATAC-G-AATA-----TACACAATAATA-GTCACAAAA--------GTTT-A-----AATTACATCAAT--A-A-A-ATGC---ATAT-----G----------AATTATGT-------------------AGG--TT--------C---------T-----GA----TTAAT------GG----TG--TG--T------------GTCT-----G-----GT---GTTATTG-TA-TA------T-----TTAAC-AATGAACtgtgacttgtgtgttcctcaatcacaatcatatagtatcggagaagcccgtgcgtcagtccatccgatcttctctgttctatgactttctcacacata
gi|2 : acagttttcgctactataTTT-A-----G----------T--A-T-ACATAA---ATAT-----A----------A------TGTATATGCATTATAT----AGG--TA--------C---------T-----G-----TT--T------TA----TG--T---T------------GTCT-----GTCC--GTT--GTTATTG-TACT-------T-----TTAAC-ACCGAACA------CTA---GTA---GAATTG-AAAAtag
gi|19 : g-ACATAA---ATAT-----A----------A------T-------------------GTA--TA--------C---------G-----AA----TT--A------TGCCGGTG--C---T------------GTGTTTATCG--T--GTT--GTTATTGATA-C-------TCGTATTTAAC-AACGAACA------CTA---GTG---GAATTGCAAAAACT-TCGTTTTCATCAGGAATA----TG-TG---ATT-TATTG------TAAA-AA-A--TCAGA-AATTAAATGAATA-AT--TCAATG---TA------TT-CCAATGTATTTCGT-ATAAA-ATGCAAT----AGT--------TT--------------CAA--------------TATA--------------ATCGA---------AT----------GTAA----------T----TTTCGTGTG---ATAT------CG-TTTTCGGCGTTATTtatcagaaattaaatgtttaatacaacgtttttattgtattttgaataaaccaattgaataacaatgcaatagttataatatattcgaatatatatttccgatgttacggttttcgacgttgttgaaaaatggacggtacggttttcgccattgattgatacggttttcgatgctcatccagaatttgtatatacattctgttattgaataaaatgtatttgcgtaatatctaagaatttttaatgatctatttaaaaatgttttcacatatataatacattttgaaatacttaaactgctatcccgctttcttacatgttgcctgtctcaaaatgcataatgatataaataatgcatggaatataatttgcatctcattttcgtagtcagtgttgtattttctcatatcagttgatttatacttctattcatgtataaacatttgtaaaaagtaaacgtcataatcttgtgcgtgttacacaggagtgtgtcagcctccgatattaataatttaatatctacacttgtgcacaaacatactaattcgagctcataaagcagagaaggtatttattattatttaaattattgcaatttattctatttttataaaattaatgtcgaatgcttgttaatgaaatttaaatactcttttgaagctagttaatctttgattggattgtgtacgtatatgaatattgtcgttttaaaagtagatgataacagtacatatcctgtatacgttatcaaatgagaattaagaagtgatagatctatcatcacatgggatgaagcatcgatgacaagttcagtttttacaagtttcctatatttaattgtataactggggacatcgaaagcaattatttt
gi|18 : gcattaatt--GCT--GTTATTG-C-----------------TAAT-AT-GTACA------CTACTGGTG---GGCGTTCAAAAACT-GAGTTTTTGTCAA-TAAAATGTTG-TAAG-------TTG------TAAA-CA-T--TTAGATAAGTAAATGTT---AT--A--ATAA-TTA------AT------GCATTTCGC-ATAAACA--CTTTTG--AAT--------AA--------------CGA--------------TGCAATAAT---------TTC------------A----------ATAT----------A----TTgga
gi|13 : tgctattT-TATTGT-----TAAG-AA-A--TCAGA-AATTAAATATTTA-AT--ACAATGC-AT-------TT-TAA-TGTATTTCGC-ATCAA-A--CATTTG--AAT--------AA--------------CAA--------------TGCA--------------AT--A---------AT----------ATATTGTAATGATTA----TTTCCTGTG---AT-A------CGGTATTCGACGTTATAAGAAAATGGCCGGTACGA-TTTTCGTCAT-TGATTGATACGGCATTCGATACTTATTCAAGAATTGTATTCACATTTCGTT-AATTAAAAAAA-TAT-TGTGCATATTGTATATGACTCTTTAATG-A-TCGATTT-AA-GACATTTTCACATT-AAA-TAA-TACCTGTTGTATTACTTAAACTGC--CATATCTA-CTTACCATGCAGATA---TATCTTCCAAC-AGTGCATcgtttatatagttttaatgagactgtattcggagcaaagtcccggcatcaaaacgtatatacacaaatgcaatacttaattggaagactatttcacatcacattggt
gi|2 : gatA-AATA--TCAGA-AATTAAATGTTTA-AT--ACAACGT-TTT------TA-T---TGTATTTTGA-ATAAA-C--CAATTG--AAT--------AA--------------CAA--------------TGCAATAGTTATAATATATTCGA---------AT----------ATAT----------A----TTTCCGATG---TT-A------CGGTTTTCGACGTTGTTGAAAAATGGACGGTACGG-TTTTCGCCAT-TGATTGATACGGTTTTCGATGCTCATCCAGAATTTGTATATACATTCTGTT-ATTGAATAAAA-TGTATTTGCGTAATATCTAAGAATTTTTAATG-A-TCTATTTAAA-AATGTTTTCACA-T-ATA-TAA-TACATTTTGAAATACTTAAACTGC--TAT-CCCG-CTT-TCTTACATGTTGCCTGTCT--CAA--AATGC--------ATAATGATATAAATAATGCATGGAATATAATTTGCATCTCATTTTCGTAGTCAGTGTTGTATTTTCTCATATCAGTTGATTTATACTTCTATTCATGTATAAACATTTGTAAAAAGTAAACGTCATAATCTTGTGC-----------------------GTGTTACACAGGAGTGTGTCAGCCTCCGATATTAATAATTTAATATCTACACTTGTGCACAAACATACTAATTCGAGCTCATAAAGCAGAGAAGGTATTTATTATTATTTAAATTATTGCAATTTATTCTATTTTTATAAAATTAATGTCG--AATGCTTGTTAATGAAATTTAAATACTCTTTTGAAG-CTAGTTAATCTTTGATTGGATTGTGT-ACG-TATATGAATATTGTCGTTTTAA-A-----AGTAGATGATAACAGTACATATCCTGTATACGTTATCAAATGAGAATTAAGAAGTGATAGATCTATCATCACATGGGATGAAGCATCGATGACAAGTTCAGTTTTTACAAGTTTCCTATATTTAATTGTATAACTGGGGACATCGAAAGCAATTATTtgtgacttatttgttcttcaatcacaatcatatagtatcgga
gi|9 : gtttagtatacataaatataatgtatatgcattatataggtactgttttatgttgtctgtccgttgttattgtacttttaacaccgaacactagtagaattgaA-AA-A--TCAGA-ACTTGAGTGTTAA-AT--TTA-TGTATTGATATATTT-TAA-TGTCTTTCGC-ATAAA-A--CATTTG--AAT--------AA--------------CAA--------------TGCAATAG----------TTTAATTATATTAGAAT---------GTAT----------A----TTTCCTACG---AT-A------TGGTTTTCAAAGTTATTGGAAAATGGCCGGTATGG-TTTCCG---T-TG-TTGATACGGTATACGATACTCATTCAGGA-----------ATT-TGTT-AATGAACAAAA-TATTTTTGAGTAATACCTATGAATCTTTAAAG-A-TGTATTCAGA-----TTT---------TA-TAA-TACATTTTGTATTACTTA-ACTGC--CA--------TT-TC-TACATATtt
gi|22 : gatataccaatattgcaatttatgtttttgaccgagactgtactcgctttcaggtttttgacagagagatactgtctttgacagacgcattttatcagggttaccgacttaaggtattatttttttatttttcatacaatacacacgaatatacacaatattagtcataaaagttacataaatataatgtatatcgatgaattatgtaggttttgtttttatggtgtgtgtctgttgttattgacaaactctagtggaattgcaaaaaA-AA-A--TAAAA-AAATAAACGTTTA-AT--ACAATGTATTG------TA-T---TGTTTTTCTC-ATAGA-A--CATTTG--AAT--------AA--------------CAA--------------TTCAATAGT---------TTCAA---------TATATTGGATTGGTAT----------A----TTTTACATG---AT-A------TAATATCGGATGTTATTGGAAAATGGACAGAATGG-TTTTCGTCACATGATTTATGCGGTATTCGATACTCATCcatgcagacatatcttcaaatagt
gi|23 : gattaattgttaATA--------------TTCGA---------AT----------ATAT----------A----TTTCCTATG---AT-A------CGGTATTCGACGTTATTTGAAAATGGACGGCACGG-GTTTCGTCAT-TGACTGATACGGTATCCGATACTCATC-----TT------TACAATTTGTT-GATGAGTAAAA-TGTATTTGCTTAATGATTAattata
gi|14 : catagaattgtgatatttatgtaTGTG---AT-A------CAGTTTTCGACGTTGTTGGAAAATGACCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTTGATACTCATTCAGAAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTTGTGTAATATCTA--------TGA---A-TC--TTTAAA-GACGTTTTCACATT-ATA-TTA-TACATTTTGTAATACTTAAACTGCAATAT--CTA-CTTATCATGCACAttgaatactcaactgtagcatctcctaatattaa
gi|20 : TTTTTGAGTACACTTCAT-TTTAACCTTGCTATGCCGCTGTATATGAATATTGTCGTTTTACTACAAAAAGTAGACGATTTCAGTACATATCCTGTGTATGTCATCGAATGAGAACTAAAAAGTGATAGATCTATCATCACGTCTGATGAAGCCTCGATGACAA----------------TTTCACATATTTAACTGAATAACTGGGGACATCGTAAGCAATTA------TTTTAGATCgtgtcatgtaactaagtcactagcatgcagatatctcttcaaacagtgcattgcgacttgtgtgttcttcaaacataattacgttgtatcggagtatg
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): TTAATGAATAAAATGTTTTTTGCGTAACATCTTTGGATCTTTAAAGGCGTTTTCACATTATATTAAACATATTGTATTAAACTTCCATATCAACCTACCATGCAGATATATTAGTGCATTGTAACTTGTGTGTTTGTTATTCAATCATAATCATAATAATAGTATCGAAGCATGTCCGTGCGTCTGTCCGTCCGATATTGTCCGTGTA
Unaligned ( gi|25 ): TAGACTGACTGGTGCTATAACAACCAATCATCAAACAGTGTAGACTGACTGGTGCTATAACCTAGTATGTTCTTCAAGCACAATCATACTGTATCTGTTATTGGCCTAGTTTAACAAATTCTGCGTCGTATTTCATTTGGCTCTCCCGTCA
Unaligned ( gi|27 ): TTGTTTCATGCTCTTGCGGGGGTCTTATCTTGTGTTTACGTTCTCGTAATCTACACTTCTCATCGCCTCTATTTGTGACTATGTAATAGGTGGTAAGGTCA
Unaligned ( gi|28 ): TGTGTCTTGTATGGCTTATTATGTTTGGTCCCAACAAAAGATGCATTTCCGGTTGAATTCTTGATTTATTAGCAAATATCATT
Unaligned ( gi|29 ): TCAATGATTTTTAATTTTAACAGAGTCATGGGCTTTCTTAAGAAATGATAAGTATT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111 11111111111111111111111
lowQualScore : 11 2222 11111111111111111 111111111 1111111111111 222222222 11111 0000000000000000000000000000000000000000000000000000000000 111111111 11111111111111 22222222222 222 111 111 55555555555555555555555555555555555555555555555 6666666666666666666666 2 333 11 22 33333333333333333333333 222222 111 11 88888888888888888888888 333333 1 22 222 111111 333333 222222 1 33333
lowQualScore : 55 66 4444 1 0 9999 4444 4 88888888888888888 55555 222222222 888888888 2 1 4444444444444 444 777777 2 0 1 1 0 99999999 2 2 2 8888888 33 33 1 444 2 2 333333333 66 2 444 00000 33 66666 3333333333333333333333333333333333333333333333333333333333 33 1 333333333 222 5555 44444444444444 1 22222222222 33 2 33 5555 666666 4 2 777777 444 2 888 0 111 33 2 33 8888888 33 0 2 2 33 33 99 111 5 5555 2 2 2 2 111 11111111111111111111111111111111111111111111111 5555 2 444 33 2 2 2 2 2 2 1 2 2 7777777777777777777777 3 2 3 3 4 3 1 33 5 1 3 000 44 55 00 5 66666666666666666666666 333333 77 777 33 3 2 2 55555555555555555555555 66 2 2 000000 2 4 5 77 4 1 555 1 1 6 000000 0 333333 111111 0 22 0 0 0 22 1 5 4 1 1 1 55555
lowQualScore : .. .. .... . . .... .... . ................. ..... ......... ......... . . ............. ... ...... . . . . . ........ . . . ....... .. .. . ... . . ......... .. . ... ..... .. ..... .......................................................... .. . ......... ... .... .............. . ........... .. . .. .... ...... . . ...... ... . ... . ... .. . .. ....... .. . . . .. .. .. ... . .... . . . . ... ............................................... .... . ... .. . . . . . . . . . ...................... . . . . . . . .. . . . ... .. .. .. . ....................... ...... .. ... .. . . . ....................... .. . . ...... . . . .. . . ... . . . ...... . ...... ...... . .. . . . .. . . . . . . .....
lowQualScore : 77 99 7777 8 1 2222 1111 7 88888888888888888 55555 222222222 444444444 2 7 7777777777777 777 777777 7 1 0 1 5 77777777 5 5 5 1111111 44 55 7 777 7 5 111111111 99 5 444 66666 44 22222 6666666666666666666666666666666666666666666666666666666666 44 9 444444444 888 3333 11111111111111 0 33333333333 22 4 22 0000 888888 7 1 222222 444 7 222 8 000 77 5 44 8888888 44 6 5 5 55 44 88 666 0 3333 5 5 5 5 222 66666666666666666666666666666666666666666666666 0000 4 111 44 4 7 7 9 9 9 7 9 9 2222222222222222222222 1 3 1 3 5 6 8 88 7 0 6 000 55 55 55 0 44444444444444444444444 000000 00 555 88 2 5 5 00000000000000000000000 55 5 5 000000 5 0 5 55 0 0 333 0 0 7 333333 7 777777 777777 7 00 7 7 7 00 0 0 0 0 0 0 77777
consensus : GTTACGTTTTCGACC--GA--CGATATACCAATATTGC--GAT-TT-----------------A----TGTTTTCGACCGAG--TAAT---AC---------GGTAT-TCGACCGAGAGGTAC-------------T---GTC------TTCGACAGAC-GCATTTTATCAGGGTTACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACGA--TATT-AGTCACAA---AA-GTTTA-A----T--ATAC--ATA-A---A-----T--AT-----A--------------A------T-------------------A---------------GG--TACTGT--------TTT-T-A----TG--T---T-------GTGT-----G--T--GTT--GTTATTG-T--A----TA------TTTA-ACGACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAAGAAAATGTGAAT--TT-A--TTG-----TTA--AAAAATCAGA-AATTAAATGT-TT-AATAC--AATGT-TTTTNA-T-GTA----TTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGT---------T---------TC---------GA---------AT--GT----ATAT---TTC--C-TGTGATACGGTTTTCGACGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCGATACTCATTCA-GGAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GCGTAAT-ATCT-A-GAATCTTT-AATG-ATC-ATTTA-AAGACGTTTTCACATTATA-TAATACA-TTTTGTANTACTTAAACTGCCA-TATCTA-CTTACCATGCAGA-TA-C-TGTC-T--CAA--AGTGCA-T--AG--ATTTATAAT----G---ATAT------AAATAGTGCATGNAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTTTCTCATATCAGTTNATTTATACTTCTATTCATNTGTAAACATTTGTAAAAAGTAAACGTCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACANNGGAGTGTGTCAGCNTCCGATATTAATAATTTAATATCTACACTTGTNCACAAACATACTAATTCGGGCTCATAAAGCAGANAGGGTATTTATTATTATCTAAATTATTGCAATTTATTCTATTTNTATAAAATCAATGTCGAAAATGCTTGTTAATGAAATTNAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGCCGCTGTATATGAATATTGTCGTTTTA-TA-GAAAAGTAGACGATTTCAGTACATATCCTGTATACGTTATCGAACGAGAACTAAGAAGTGATAGATCTATCATCACGCGTGATGAAGCCTCGATGACAA-TTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGGGACATCGAAAGCAATTA----TTTTTTAGATC
Reference ( family-584 ) : GTTACCTTTTCGACC--GA--TGATATACCAANATTGC--GAT-TT-----------------A----TGTTTTCGACCGAG--TAAT---AC---------GGTAT-TCGACCGAGAGGTAC-------------T---GTC------TTCGACAGAC-GCATTTTATNAGGGTTACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACGA--TATN-AGTCGCAA---AA-GTTTA-A----T--ANAC--ATA-A---A-----T--AT-----A--------------A------T-------------------A---------------GG--TACNGN--------TTT-T-A----TG--T---T-------GTNT-----G--T--GTT--GTTATTG-T--A----TA------TTTA-ACGACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAAGAAAATGTGAAT--TT-A--TTG-----TTA--AAAAATCAGA-AATTAAATGT-TN-AATAC--AATGT-TTTTTA-T-GTA----TTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGT---------T---------TC---------GA---------AN--GT----ATAT---TTC--C-TGTGATACGGTTTTCGACGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCGATACTCATTCA-GGAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GCGTAAT-ATCT-A-GAATCTTT-AATG-ATC-ATTTA-AAGACGTTTTCACATTATA-TAATACA-TTTTGTANTACTTAAACTGCCA-T-TCTG-CTTATCATGCANA-TAGCCTGTC-T--CAA--AGTGCA-T--AG--ATTTATAAT----G---ATAT------AAATAGTGCATGNAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTTTCTCATATCAGTTGATTTATACTTCTATTCATGTATAAACATTTGTAAAAAGTAAACGTCATAATCTTGTGC-----------------------GTGTTACACAGGAGTGTGTCAGCCTCCGATATTAATAATTTAATATCTACACTTGTGCACAAACATACTAATTCGAGCTCATAAAGCAGAGAAGGTATTTATTATTATTTAAATTATTGCAATTTATTCTATTTTTATAAAATTAATGTCG--AATGCTTGTTAATGAAATTTAAATACTCTTTTNGAGTNCANTTNATCTTTGACCGNGCTGTGCCGCNGTATATGAATATTGTCGTTTTANTACAAAAAGTAGACGATNNCAGTACATATCCTGTGTACGTCATCGAATGAGAACTAAGAAGTGATAGATCTATCATCACGTNNGATGAAGCNTCGATGACAAGTTCAGTTTTTACAAGTTTCNCATATTTAACTGNATAACTGGGGACATCGNAAGCAATTA----TTTTTTAGATC
gi|1 : GTCAC--TTCCGAAC--GC--TGATATACCCGAACTGT--GAT-TT-----------------A----TGTTTTCGACCGAG--TAAT---AC---------GGTAT-TCGTCCGAGAGATAC-------------T---GTC------TTCGACAGACGGAATTTTA-AAGGGTAAGTAACTTTGAAGGTA--------TTATTTTT-CATGAAA-TAAAT-GT-------GAAAATACACGA--TATA-CGTCGCAA---AA-ATTTG-A----T--AAAC--ATA-A---A-----T--AT-----A--------------A------T-------------------A---------------GG--TACAGA--------TTT-T-A----TG--T---T-------GTCT-----G--C--GTT--GTTATTG-T--A----T-------TTTA-ACACCGAACA------CTAGT---AGAATTGCAAAAACTG-CGTTTTTATCAAGTAAATGTAAACAGTT-A--TTGCCTTTCTA--CAAAATCAGA-AATTAAATGT-TT-GATAG--AATGT-TTGTTT-T-GTA----TTTTGC-ATAA-A-ACAATTG-AATAA---CAATACA--------------T---------TC---------AA---------AA--AT----ACAT---TTC--C-TATGATTCGATGTTGGACGTTGTTTAAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCAATACTCATCCA-GGATTTGTGTATACATTCTGTT-GATGAATAAAA-TGTATTC-GCGTAAT-ATTTAA-AAATTCTT-AATG-ATCGATTTA-AAAATGTTTCCACA-TATA-TAATACA-TTTTGAAATACTTATACTGCTA-T-CCCG-CTT-TCTTGCATA-TAGCCTGTC-T--CAG--AGTGCA-T--AC--ATTTATAAT----G---ATAC------AAACAGTGTGTGAAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTGTCTCATATCAGTTTATTTATATTTCTATTCATTTGTAAACATTTGTAAAAAATAAACATCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACAGTGGAGTATATCAGCATCCGATATTAATAATTTAATATCTACACTTATTCACAAAC------ATTCGGGCTCATAAAGCAGACAGGGTATTTATTATTATCTAAATTATTGCAATTTATTTTATTTATATAAAATC-ATGTCGAAAATGCTTATTAATGAAATTAAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATG-TACT-TGTATGAATATTGTTGTTTTAATAGGAATAGTAGATGATTTCAGTACATATCCTGTATATGTTACCGAACGAGAACTAAGAAGTGATAGATCTATCATCATGCGTGATAAAGCCTTAATGACAATTTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGTGACACCGAAAGCAATTACTAGTTTTTTAGATC
gi|10 : GGTATACCAAAATTGC--GTT-TTTTACTGTACATGCCCTCA----TGTTTTCGACCAAG--TAAT---AC---------GGTAT-TCGACCGAGCGATAC-------------T---GTT------ATCGACAGAC-GCTTTTTATCAGGGTAACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACAG--CAGT-AGTCGCAA---AA-GTTTA-AAT--T--AGATTAATAGA---A-----TGCAT-----ACGAATTAT------G------T-------------------A---------------GG--TTCTGT--------GTTATGA----TG--G---T-------GTGT-----G--TCTGTT--GTTATTG-T--A----TA------TTTA-ACGACAAACT------CAAGG---GGAACTGCAAAAACTT-CGTTGTCATAAAGAAAATGTGA-T--TT-A--TTG-----TAA--AAAAATCATA-ACTTAAACGT-TA-AATAC--AATGT-ATTTTAAT-GTA----TTTCGC-ATAA-A-ACAATTG-AATAA---CAATGCAATAAT---------T---------TC---------GATATATTCGAAG--GT----AAAT---TTT--C-TGTGATACCGTTT-CGACGTTATTGGAAATTGGCCTGTAAGG-TTTTCGTCAT-TGATCGATTGGGTATTCGAT---------------TGTATTTACATTTTGTT-AATGAATAAAA-TGTTTAT-GCGTAAT-ATCT-------------ATGCAT--ATTTA-AAGATGTTTTCACATCATA-TAATACA-TTTTGTA
gi|11 : GTTACCTTTTCGACC--GA---GACGTAC-----TCGC--T-T-TC-----------------A----GGTTTTCGACCGAG----AT----C---------GGCAT-GCGACCGAGATGTAT-------------T---GTT------TTCGACAGGC-GCATTTAATCAGGGTTACTGACTTTAAGGGTA--------TTATTTTT-CATGAAA-TA-----T-------AAGTATACACAA--TACT-AGTAACAA---AA-GTTTGGA----T--A-AC--ATA-A---A-----T--AA-----A--------------A------TTTATACGAATTATACTGGCA---------------GGCCTACTGT--------TTT-T-A----TGGCT---T-------GTGT-----C--T--GTT--GTTATTG-T--A----TA------TTTA-ACGGCGAACA------CTAGT---AGAATTGCAAAAGCTT-CGTTTTCAACAAG-AAATGTG-AT--GT-G--TTG-----TAA--AGAAATCAGA-AATTAAATGT-CA-AATAC--AACGTATTTTGA-T-GTA----TTTCGCAAAAA-A-ACATTTG-AATAA---CATTGCAATAGT---------T---------TC---------AAT--------AT--ATTCGAATATAAATTC--T-TGTGATACGGTTTTCGACGTTACTGGAAAAGTACGGGTTCGGTTTTTTGTCAT-TGATTGCTACGGTATTCGATACTCTTTAA-GGAATTGT
gi|12 : gtggataggcctatattgtgaGATATACCAATATTGC--TAT-TT-----------------A----TGTTTCTGACCGAA---------AC---------GGTAC-TCG
gi|12 : TTTTCAACCGAG--TAAT---AC---------GG-ATATCGACCGATAGATAC-------------T---GTC------TTTGACAGGC-GAATTTCATTTTGATTACTGACTTTAACAGTT--------TTATTGTT-CCTGAAA-TAAAT-AT-------GAATATACACGA--TATT-AGTCACAAAATAA-GTTCA-AATTGC--ATAT--ATA-A---AATG--T--AT-----ATGAATTAT------G------T-------------------A---------------GG--TACTGT--------TTT-A-A----TG--T---TTTATGGCGTGT-----GTCT--GTT--GTTATTG-C--A----TA------TTCA-ACGGCGAACA------CTAGT---GAAATAGCAAAAACTT-CATTTTCATCAAGAAAATTTG-AT--TT-A--TTG-----AGA--AAAAGAGAGA-AATTAAATGA-TG-AATACATAATA--TTTTAA-T-GAA----TTTCGC-ATAA-A-ACATTTG-AATAT---CAATGCAACAGT---------T---------TC---------AA--------------T----ATAT---Tctctcagattttcaaccgagtaatacggatatcgaccgatagatactgtctttgacaggcgaatttcattttgattactgactttaacagttttattgttcctgaaataaatatgaatatacacgatattagtcacaaaataagttcaaattgcatatataaaatgtatatgaattatgtaggtactgttttaatgttttatggcgtgtgtctgttgttattgcatattcaacggcgaacactagtgaaatagcaaaaacttcattttcatcaagaaaatttgatttattgagaaaaagagagaaattaaatgatgaatacataatattttaatgaatttcgcataaaacatttgaatatcaatgcaacagtttcaatatattcga
gi|13 : gatataccaatattgctatttatgtttctgaccgaaacggtactcgctctcagaAT--TT-A--TTG-----TTA--AGAAATCAGA-AATTAAATAT-TT-AATAC--AATGC-ATTTTAAT-GTA----TTTCGC-ATCA-A-ACATTTG-AATAA---CAATGCAATAATATA------T---------TG---------TA---------AT--GA----TTAT---TTC--C-TGTGATACGGTATTCGACGTTATAAGAAAATGGCCGGTACGA-TTTTCGTCAT-TGATTGATACGGCATTCGATACTTATTCA-AGAATTGTATTCACATTTCGTT-AATTAAAAAAA-TA-TTGT-GCATATT-GTAT-ATGACTCTTT-AATG-ATCGATTT--AAGACATTTTCACATTAAA-TAATACC-TGTTGTATTACTTAAACTGCCA-TATCTA-CTTACCATGCAGA-TA---TATC-TTCCAAC-AGTGCA-TTGTG--ACTTATcga
gi|14 : g-TGTGATACAGTTTTCGACGTTGTTGGAAAATGACCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTTGATACTCATTCA-GAAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GTGTAAT-ATCT-ATGAATC--------------TTTA-AAGACGTTTTCACATTATA-TTATACA-TTTTGTAATACTTAAACTGCAA-TATCTA-CTTATCATGCACAGTGTCATGTA-A--CTA--AGT-CACT--AGC-ATGCA--------G---ATATCTCTTCAAACAGTGCATttgttcttcaatcacaatcatatagtatcgga
gi|15 : GTTTTTGACTGAG--TTAA---AC---------GGTAT-TCGACCGAGGGGTACATTTTAAAAAGGGT---GTCACCTGTTTTGATGTAT-ATGTTTCGTTAAGG----TGATTT-----GTC--------ATATTTTT-TTTAAAAGTAAATAAT-------AGATAT---CGA--TATG-Atgcgacttgtgtgttcttcaaacataattacgttgtatcggagtatg
gi|16 : tgattgtgcttttatggcttatataatgtcatgttccaacgaaagttgcatttccggccgggacctcgattaattaccaaatataattaccacagtgaataaaccaatattttcgatttatgtgtttgaccgaggcggtactcgctctcagTTATGTTTTCGACC--G---TGA-----CGGTACT-C--GCTCTT-----------------AAGCCGGTTATCGACCGAT--TAAT---AC---------GATAT-TCGACCGAAAGGTAT-------------T---GCC------TTCGACAGAT-GCATTTCATCAGGGTTACTGACTTTAAA-----------------------TAAAA-TGAAC-AT-------GAATATACACGA--TAGT-AGTCACAA---GA-GTTTA-A----A--TTAC--ATA-A---A-----T--TG-----A--------------A------T-------------------G-------------------------------------T-A----TA--T---T-------AATT-----A--T--GTT--TTTATTG-T--A----TA------TTTA-ACGACCAACA------CTAGT---ATAATTGCAAAAACTT-CGTTTTtccagcgaatataagttc
gi|17 : atataccaatattgcgaTTATGTTTTCGACC--GAGTCGGTAC-------TCGC---AC-TC-----------------A----AGTTTTCGACCGAG--TTGT---AC---------GCTAT-TCGATCGAGATGTAC-------------T---GTC------TTTGCCGGAC-GCATTTTATCAGGGCTAACGACTTTG--------------------TT-CATGAGA-TAAAT-AT-------GAATATACACGA--TATT-AGACACAC---AA-TTTTT-A----A--ACAC--ATA-G---A-----T--AG-----A--------------A------T------------------------------------G--TATATG--------ACT-T-A----TG--TAGGT-------ATGT-----A--T--GTT--CTTATTG-T--A----TA------TTTA-ACAACGAATA------TTAGTAAAGGAATTGC-AAAACTT-TGTTTTCAagttttagtatttattttaaag
gi|18 : tgcatataccagctttgtgct--T--GCT--GTTATTG-CTAA----TA------TGTACAC------TA------CTGGT---GGGCGTTCAAAAACTG-AGTTTTTGTCAATAAAATGT---T--GT-AAGTTG-----T-A--AACATTTAGATAAGTAAATGT-TATAATA----AT------TAA-T-GCA----TTTCGC-ATAA-ACACTTTTG-AATAA---CGATGCAATAAT---------T---------TC---------AA--------------T----ATA----TTC--G-T-TTATATAGTTTTaa
gi|19 : tgctatTTA-A----T---TAC--ATA-A---A-----T--AT-----A--------------A------T-------------------G---------------TA--TACGAA--------TTA-T-GCCGGTG--C---T-------GTGTTTATCG--T--GTT--GTTATTGAT--ACTCGTA------TTTA-ACAACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAGGAATATGTG-AT--TT-A--TTG------TA--AAAAATCAGA-AATTAAATGA-AT-AATTC--AATGTATTCCAA-T-GTA----TTTCGT-ATAA-A-A----TGCAATAGTTTCAATATAA-----------------------TC---------GA---------AT--GT----A-AT---TTT--CGTGTGATATCGTTTTCGGCGTTATTGGAaatgagactgtattcggagcaaagtcccggcatcaaaacgtatatacacaaatgcaatacttaattggaagactatttcacatcacattggt
gi|2 : gca-GTTTA-G----T--ATAC--ATA-A---A-----T--AT-----A--------------A------TGTATATGCATTATAT----A---------------GG--TACTG---------TTT-T-A----TG--T---T-------GTCT-----G--TCCGTT--GTTATTG-T--A----CT------TTTA-ACACCGAACA------CTAGT---AGAATTGAAAA
gi|2 : -A--TTG-------A--AAATATCAGA-AATTAAATGT-TT-AATAC--AACGT-TTTTAT-T-GTA----TTTTGA-ATAA-A-CCAATTG-AATAA---CAATGCAATAGT---------TATAATATATTC---------GA---------AT--AT----ATAT---TTC--C-GATGTTACGGTTTTCGACGTTGTTGAAAAATGGACGGTACGG-TTTTCGCCAT-TGATTGATACGGTTTTCGATGCTCATCCA-GAATTTGTATATACATTCTGTT-ATTGAATAAAA-TGTATTT-GCGTAAT-ATCT-AAGAATTTTT-AATG-ATCTATTTA-AAAATGTTTTCACAT-ATA-TAATACA-TTTTGAAATACTTAAACTGCTA-T-CCCG-CTT-TCTTACATG-TTGCCTGTC-T--CAA--AATGCA-T--A----------AT----G---ATAT------AAATAATGCATGGAATATAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGTATTTTCTCATATCAGTTGATTTATACTTCTATTCATGTATAAACATTTGTAAAAAGTAAACGTCATAATCTTGTGC-----------------------GTGTTACACAGGAGTGTGTCAGCCTCCGATATTAATAATTTAATATCTACACTTGTGCACAAACATACTAATTCGAGCTCATAAAGCAGAGAAGGTATTTATTATTATTTAAATTATTGCAATTTATTCTATTTTTATAAAATTAATGTCG--AATGCTTGTTAATGAAATTTAAATACTCTTTTGAAG-CTAGTTAATCTTTGATTGGATTGTGT--ACGTATATGAATATTGTCGTTTT------AAAAGTAGATGATAACAGTACATATCCTGTATACGTTATCAAATGAGAATTAAGAAGTGATAGATCTATCATCACATGGGATGAAGCATCGATGACAAGTTCAGTTTTTACAAGTTTCCTATATTTAATTGTATAACTGGGGACATCGAAAGCAATTA----TTTTtatcagaaattaaatgtttaatacaacgtttttattgtattttgaataaaccaattgaataacaatgcaatagttataatatattcgaatatatatttccgatgttacggttttcgacgttgttgaaaaatggacggtacggttttcgccattgattgatacggttttcgatgctcatccagaatttgtatatacattctgttattgaataaaatgtatttgcgtaatatctaagaatttttaatgatctatttaaaaatgttttcacatatataatacattttgaaatacttaaactgctatcccgctttcttacatgttgcctgtctcaaaatgcataatgatataaataatgcatggaatataatttgcatctcattttcgtagtcagtgttgtattttctcatatcagttgatttatacttctattcatgtataaacatttgtaaaaagtaaacgtcataatcttgtgcgtgttacacaggagtgtgtcagcctccgatattaataatttaatatctacacttgtgcacaaacatactaattcgagctcataaagcagagaaggtatttattattatttaaattattgcaatttattctatttttataaaattaatgtcgaatgcttgttaatgaaatttaaatactcttttgaagctagttaatctttgattggattgtgtacgtatatgaatattgtcgttttaaaagtagatgataacagtacatatcctgtatacgttatcaaatgagaattaagaagtgatagatctatcatcacatgggatgaagcatcgatgacaagttcagtttttacaagtttcctatatttaattgtataactggggacatcgaaagcaattatttt
gi|20 : gtttagtatacataaatataatgtatatgcattatataggtactgttttatgttgtctgtccgttgttattgtacttttaacaccgaacactagtagaTTTTTGAGTACACTTCAT-TTTAACCTTGCTATGCCGCTGTATATGAATATTGTCGTTTTACTACAAAAAGTAGACGATTTCAGTACATATCCTGTGTATGTCATCGAATGAGAACTAAAAAGTGATAGATCTATCATCACGTCTGATGAAGCCTCGATGACAA----------------TTTCACATATTTAACTGAATAACTGGGGACATCGTAAGCAATTA------TTTTAGATC
gi|21 : TT-AATGAATAAAA-TGTTTTTTGCGTAAC-ATCT---------TT-G--G-ATC--TTTA-AAGGCGTTTTCACATTATA-TTAAACA-TATTGTA----TTAAACTTCCA-TATCAA-CCTACCATGCAGA-TAttttt
gi|22 : AT--TA-A--TTG-----TTA--AAAA-TAAAA-AAATAAACGT-TT-AATAC--AATGT-ATTGTA-TTGTT----TTTCTC-ATAG-A-ACATTTG-AATAA---CAATTCAATAGT---------T---------TCAATATATT-GG---------ATTGGT----ATAT---TTT--A-CATGATATAATATCGGATGTTATTGGAAAATGGACAGAATGG-TTTTCGTCACATGATTTATGCGGTATTCGATACTCATtattagtgcattgtaacttgtgtgtttgttattcaatcataatcataataatagtatcgaagcatgtccgtgcgtctgtccgtccgatattgtccgtgta
gi|23 : gATGTAATA-----------T---------TC---------GA---------AT--AT----ATAT---TTC--C-TATGATACGGTATTCGACGTTATTTGAAAATGGACGGCACGG-GTTTCGTCAT-TGACTGATACGGTATCCGATACTCATC------------TTTACAATTTGTT-GATGAGTAAAA-TGTATTT-GCTTAAT-cattata
gi|24 : catagaattgtgatatttATATACCAGAACTGC--GAT-TT-----------------A----TGATTTCGACCGAG---------AC---------GGTgattattgaatactcaactgtagcatctcctaatattaa
gi|24 : tGTTTTCGACAGAG--TAAT---AC---------GGTAT-TCGTAAGAGAGGTAT-------------T---GTC------TTCGGCAGAC-ACTTTTCATAAAAGTAAGAGACTTTGAGGGTA--------TTATTTTC-CATGAAA-TAAAT-AT-------GAAAATACACGA--TATT-AGTCGCAA---tctcgctctcaggttttcgacagagtaatacggtattcgtaagagaggtattgtcttcggcagacacttttcataaaagtaagagactttgagggtattattttccatgaaataaatatgaaaatacacgatattagtcgcaa
gi|26 : tatataccagaactgcgatttatgatttcgaccgagacggttctcgctctcag-CATG----TAAAT-AC-------GAATATACACAA--TAAT-AGTCACAA---AA-GTTTA-AAT--T--ACATCAATA-A---AATGCAT--AT-----G--------------AATTATGT-------------------A---------------GG--TTCTGA--------TTA---A----TG--G---T-------GTGT-----G--TCTGGT--GTTATTG-T--A----TA------TTTA-ACAATGAAC
gi|3 : acagttttcgctactataGATATACCAATAT-GC--GAT-TT-----------------A----TGTTCTCGACCGAG---------AC---------GGTAC-TCGtag
gi|3 : tgTTATGTTCTCGACC--GA---GA-----CGGTACT-C--GCT-TTC----------------A----GGGTTTCGACCAAG--TGATGATAC---------GATAT-TTGAGTAAGATGTAC-------------TACTGTC------TCCGACAGAC-ACATTTTATCAGAATTATTGACTTTGAAGGTA--------CTATTTTT-CACGATA-AAAAT-AT-------GAATATACACGA--TATT-TGTCACAA---ATTGTTTA-A-------ATAC--ATA-A---A-----T--AG-----A--------------A------T-------------------GTATATGAATGATGTGAG--TACTGT--------GTT-T-G----TG--G---G-------GTTT-----G--TATGTT--GTAATTG-T--A----TA------ACTA-ACTACAAACA------TAAGT---GAAACTGCAAAAACTT-T----------------TGT-AAT--TT-A--TT------TTA--AAAAATCGGA-AATCGAATGT-TT-AAAAC--AATGTATTGTTT-T-GTA----TTTCGC-ATAA-A-ACATTTG-AATTA---AAATGCAATAGT---------T---------TCAATATATTCGA---------AT--TC----ATAT---TTC--A-AATGATACGGTATAAGGCGTTATTGGAAAA-GGACGGAACGG-TTTTCGTCAT-TGATTGATATTACATTCGGTACTCA-TCATGGAATTGTACTTACATTTTGCT-GATGAGCAAAACTAAATTT-GCTTAATGATCA-T-GAATCTTT-AATG-GTCGATTT--AAGACGTTCCCACA-TATA-CAGTACA-TTTTGTAATCCTTAGACTGCCA-TATCTA-CTTGTCATACACA-TA-CATCT--T--CAAACATTGCA-T--TGTAACCTATGATCTTCGACCACAT------AAATATAGTAT---CTGTTACTGGCATTGTTTTATAAATTCTTTGTC-GTTTTCCATTTGTTCATACCctttcagggtttcgaccaagtgatgatacgatatttgagtaagatgtactactgtctccgacagacacattttatcagaattattgactttgaaggtactatttttcacgataaaaatatgaatatacacgatatttgtcacaaattgtttaaatacataaatagaatgtatatgaatgatgtgagtactgtgtttgtggggtttgtatgttgtaattgtataactaactacaaacataagtgaaactgcaaaaacttttgtaatttattttaaaaaatcggaaatcgaatgtttaaaacaatgtattgttttgtatttcgcataaaacatttgaattaaaatgcaatagtttcaatatattcgaattcatatttcaaatgatacggtataaggcgttattggaaaaggacggaacggttttcgtcattgattgatattacattcggtactcatcatggaattgtacttacattttgctgatgagcaaaactaaatttgcttaatgatcatgaatctttaatggtcgatttaagacgttcccacatatacagtacattttgtaatccttagactgccatatctacttgtcatacacatacatcttcaaacattgcattgtaacctatgatcttcgaccacataaatatagtatctgttactggcattgttttataaattctttgtcgttttccatttgttcataccgt
gi|30 : tggatataccaatatgcgatATACCAATATTGC--GAT-TT-----------------A----TGTTATCGACCG------AT---AC---------GGTAG-TCGgt
gi|4 : agtgtagGATATACAAAAATTGC--GAT-GT-----------------A----TGTTTTCGACCGAG--ctct
gi|4 : atgTTTTCGACC--GAGACGGTATAC-------GC--T-C-TC-----------------A----GGTTTTCGACCGAG--TAAT---AC---------GGTAT-TCTTTCGAGATGTAT-------------T---GTC------TTCGACAGAC-GAATTTTATTAGGGTAAGTGTTTTTTAAGGTA--------TAATTTT--CATGAAA-TAAAT-AT-------GAAAATACACGA--TATT-AGTCGCAA---AA-TTTTA-A----T--ATAC--GTA-A---A-----T--AT-----A--------------A------T------------------------------------G--TACAAA--------T-----A----TGCAT---T-------ATATAG---G--T--ACT--ATTATT------------------TTTACAC--CGAACA------CTAGT---AGAATGGCAAAAACTTGCGTTTTCAT----GAAATGTTA-T--TA-A--TT------TTA--AAAAATCAGA-AATTAAATGT-TT-AATAC--AATGT-TATTAT-T-GTA----TTTTGC-ATAA-A-ACAATTG-AATGA---CAAGTCAATATT---------T---------TCTATATATTCGA---------AT--AT----GTTT---TTT--C-CATGATACGTTTTTCGACGTT---GAAAAATGGACGGTACGG-TTTTCGTTAT-TGATTGATACGATTTTCAATACTCATCCA-GGATTTGCATATACATTCTTTT-TATGAATAAAA-TGTTTTT-GCGTTAT-ATTTAA-GAATCTTT-AATG-TTC-GATTACAACATGTTTCCACA-TATA-TAATACA-TTTTGAAATACTTAAACTGCTA-T-CCTG-CTT-TCATGCATG-TAGCCTGCC-T--CAG--AATGCA-T--AG--ATTTATAAT----A---ATAT------AAATAGTGCATGCAATGTAATTTGCA---TCTTAT--TTTCGTAGTCAGTGTTGCATTTTCTTATATCAacggtatacgctctcaggttttcgaccgagtaatacggtattctttcgagatgtattgtcttcgacagacgaattttattagggtaagtgttttttaaggtataattttcatgaaataaatatgaaaatacacgatattagtcgcaaaattttaatatacgtaaatataatgtacaaatatgcattatataggtactattatttttacaccgaacactagtagaatggcaaaaacttgcgttttcatgaaatgttattaattttaaaaaatcagaaattaaatgtttaatacaatgttattattgtattttgcataaaacaattgaatgacaagtcaatattttctatatattcgaatatgttttttccatgatacgtttttcgacgttgaaaaatggacggtacggttttcgttattgattgatacgattttcaatactcatccaggatttgcatatacattctttttatgaataaaatgtttttgcgttatatttaagaatctttaatgttcgattacaacatgtttccacatatataatacattttgaaatacttaaactgctatcctgctttcatgcatgtagcctgcctcagaatgcatagatttataataatataaatagtgcatgcaatgtaatttgcatcttattttcgtagtcagtgttgcattttcttatatca
gi|5 : atggatatacaaaaattgcgatgtatg--TGATATACAAACATTAC--GAT-TT-----------------A----TGTT
gi|5 : TTCGACC--GA---GA-----CGGTACT-C--GCTCTC-----------------A----CG-TTTCGACTGAG--TAAT---AC---------GATCT-TCGACAGAGAGTTAC-------------T---GTC------TTCGACAGAT-GCATTTAATAAGGGTTACTGGCTTCAAAAGTA--------TTATTTTT-CATCAAA-TAAAT-AT-------GAATATACACTA--TATT-AGTAACAA---AA-ATTTA-A----T--TTAC--ATA-A---A-----T--AT-----AGTGTATATGCATATG------T-------------------A---------------TG--TACCAT--------TTT-T-A----TG--T---T-------GTGT-----GTCT--GTT--GTTATTG-T--A----TA------TTTA-ACGACGAACACATAGTCTAGT---GGAATTGTAAAAACTT-C-----------GAAAAC-TAAA----------TG-----TTA--AATA--C----AAT---GTGT-TT-G------AATGA-ATTTCG-C-ATAAAACATTCGA-A--A-A-ACATTGC-AATAGTTTCAATACAG-----------------------TC---------AA---------AT--GT----AAGT---TTT--C-TGTGATACGGTTTTCGACATAAGTAGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTTTTCGATTCTCATTCA-GGAATTGTATTTATATTTTGTA-AGTGAATAAAA-TGTTTTT-GCGTAAT-ATC-------------AATGAATC--TTTA-AATACGTTTTTACATTATA-TAATACA-TCTTGTATTACTTAAACTGCCA-T-ACCGACTTACCATGCAGA-TA---TGTCTT--CAA--Acgaccgagacggtactcgctctcacgtttcgactgagtaatacgatcttcgacagagagttactgtcttcgacagatgcatttaataagggttactggcttcaaaagtattatttttcatcaaataaatatgaatatacactatattagtaacaaaaatttaatttacataaatatagtgtatatgcatatgtatgtaccatttttatgttgtgtgtctgttgttattgtatatttaacgacgaacacatagtctagtggaattgtaaaaacttcgaaaactaaatgttaaatacaatgtgtttgaatgaatttcgcataaaacattcgaaaaacattgcaatagtttcaatacagtcaaatgtaagttttctgtgatacggttttcgacataagtagaaaatggccggtacggttttcgtcattgattgatacggttttcgattctcattcaggaattgtatttatattttgtaagtgaataaaatgtttttgcgtaatatcaatgaatctttaaatacgtttttacattatataatacatcttgtattacttaaactgccataccgacttaccatgcagatatgtcttcaaacaatcattgtgacttatatgttcttcacaatcataataaattcttatatttccgtgcgcgagtccatccgatcatgtccgttcgagaactttctcacacgt
gi|6 : tgatatacaaacattacgatttatg---AC---------GTTAT-TCAAGCGAGATA-AC-------------T---GTC------TTCGACAGAC-GCATTTTATCAGGGCTACTGACATTAAAGGTA--------TTATTTTT-CATGAAA-TGACT-ATCGCAAAAGAATGTATATGAATTATGTAGTTACT-------GTTTT-A----TGNNNNN--NNN-N---N-----N--NN-----N--------------N------N-------------------N---------------NN--NNNNNN--------NNN-N-N----NN--N---N-------NNNN-----N--N--NNT--GTTATTG-T--A----TA------TTTA-ACGACGAACA------ATAGT---G------CAAAAACTT-CGTTTTCATCAAGAAAATGTTT-T--TT-A--TTG-----TAA--ATAAA--AGA-AGTTGAATGT-TT-AATAC--AATGT-ATTTTAAT-GTA----TTTCAC-ATAA-A-ACGTTTG-AAAAAA--CAATGCAGTGGT---------T---------TCAATATAATCGA---------AT--GT----AAAT---TTTTTC-TGTGATACGGTTTTCGATGTTATTGTAAAATGGCCGGTACGG-CTTTCGTTAT-TGATTGATACGGTATTTGATATTCATTTA-GAAATTGTATTTTCATTTTGTT-AGTAAATAAAA-TGATTTT-GCGTTAT-ATCT-A--------T-GA---ATC-A-TTA-AAGACGTTTTCACATTATATTAAT-TATTTTTGTATTACTTAAACTGCCA-TATCTA-CTTACCATGCAGA-TA-CATAT--T--CAAACAGTGCA-T--caatcattgtgacttatatgttcttcacaatcataataaattcttatatttccgtgcgcgagtccatccgatcatgtccgttcgagaactttctcacacgt
gi|7 : ATATTGC--GAT-TT-----------------A----TGTTTTCGACCGAGA-TGGA---AC---------GG------AAC--AGA-----------------------------------ACAGA----ATTTTATCAGGGTTAATGACTTTAAAGGTA--------TTATTTTTTCATAAAA-TAATT-AC-------GAATATACA--A--TATT-AGTCATAA---AA-GTTTA-AATTAC--ATAC--ACA-A---C-----T--GT-----AT-------------A------T-------------------G---------------GA--TAATGTATGTTATGTTT-T-A----TG--G---T-------GTTT-----G--T--CTTTTGTTATTG-T--A----TA------TTTA-ACGACGAATA------TAAGT---GGAATTGCAACATCTT-CGTTTTCATTAAGAAAATCTTA-T--TT-A--TTG-----TCA--AAAAATCACA-AATTTAATAT-TA-AATAC--AATGT-TTTTTA-TTGTA----TTTCGC-GTAA-A-ACATTTG-AATAA---CAATGCAATAGT---------T---------TCAATATATTCGA---------AT--GT----AAAT---T-------GTGACACGATTTCCGACGTTATTGAAAAGTGGCCGGTACTG-TTTTTGTCAT-TGATTGATACGGTAATCGATACTCATTCC-GGAATTGTATTTAC---------------TAAAA-TGTTTTC-GAGAAAT-ATCT-A------------TG-A-------A-ATGACATTTTCACATTATA-TAATACA-TGCTGTATAACTTAAGCTGCCA-TATCTA-TTTACCATACAGA-TA---TATCTT--CAAACAGGGCA-T--tgtgacttgtgtgttcctcaatcacaatcatatagtatcggagaagcccgtgcgtcagtccatccgatcttctctgttctatgactttctcacacata
gi|8 : TTATGTTTTCGACCTAGA--CGGTA--CC-----TGCTAGAT-C------------------A----GGTTTTTGACCGAG--TAAT---AC---------AGTAT-TCGACCGAGAGATAC-------------T---GTC------TTCGACAGAC-GCATTTGATA----TTACT----TTAAACATT--------TTATTTTT-CATGAAA-TAAAA-AT-------TAATATACACAA--TATA-AGTCAAAA---AA-GTTTA-A----A--ATAC--ATC-A---A-----T--AG-----A--------------A------TGTATATGAATTATGT----A---------------GG--TACTGT--------TTT-T-A----TG--G---T-------GTAT-----G--TTTGTT--GTTATTG-T--A----TACCAGTTTTTA-ACGAAGAACA------ATTGT---GGAATTGCAAAATCTT-CGTTTTCAT---AAAAATAAGA-T--TT-A--TTG-----TTACAAAAAGTCTGA-CATTAACTGT-TC-AATAA--AATGT-ATTTTAAT-GTA----TTT-----TAATA-GCATT---GCTAA---TGTTTCAATATA---------T---------TC---------AA---------AG--GG----AAAT---TTC--C-TGTGATACGGTTTTCGTCGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGATATTCGATATTCATTCA-CAAATTGTATTTTTATTTTTTTCAATGAATAACC-TA-TTTT-GCGTAAC-ATAT-ATGAGTCTTTAAAGG-ATC-ATATA-----------TACATTATA-AAATAtgtgccttgtgttcttcaatcacaagcatatagtaccggag
gi|9 : atgaatattgtgatGATATACCAATATTGC--AAT-TT-----------------A----TGTTTTTGACCGAGACTG-T---ACTCGCTTTCAGGTTT-TTGACAGAGAGATAC-------------T---GTC------TTTGACAGAC-GCATTTTATCAGGGTTACCGACTT--AAGGTATTATTTTTTTATTTTT-CATACAA-TACAC-AC-------GAATATACACAA--TATT-AGTCATAA---AA-GTTAC-A----T--AAAT--ATA-ATGTA-----T--ATCGATGA--------------ATTATG-T-------------------A---------------GG--TTTTGT--------TTT-T-A----TG--G---T-------GTGT-----GTCT--GTT--GTTATT-------------------------GACAAACT------CTAGT---GGAATTGCAAAAA-----------------AAAATCAGAAC--TTGA--GTG-----TT-----AAAT-------TT--ATGTATT-GATAT--A-----TTTTAA-T-GTC----TTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGTTTAATTATAT---------TA---------GA---------AT--GT----ATAT---TTC--C-TACGATATGGTTTTCAAAGTTATTGGAAAATGGCCGGTATGG-TTTCCG---T-TG-TTGATACGGTATACGATACTCATTCA-GGAA------------TTTGTT-AATGAACAAAA-TATTTTT-GAGTAAT-ACCT-ATGAATC--------------TTTA-AAGATGTATTCAGATTTTA-TAATACA-TTTTGTATTACTT-AACTGCCATT-TCTA-CATATCATGCAGA-CA---TATCTT--CAA--Agtgatttt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TAGACTGACTGGTGCTATAACAACCAATCATCAAACAGTGTAGACTGACTGGTGCTATAACCTAGTATGTTCTTCAAGCACAATCATACTGTATCTGTTATTGGCCTAGTTTAACAAATTCTGCGTCGTATTTCATTTGGCTCTCCCGTCA
Unaligned ( gi|27 ): TTGTTTCATGCTCTTGCGGGGGTCTTATCTTGTGTTTACGTTCTCGTAATCTACACTTCTCATCGCCTCTATTTGTGACTATGTAATAGGTGGTAAGGTCA
Unaligned ( gi|28 ): TGTGTCTTGTATGGCTTATTATGTTTGGTCCCAACAAAAGATGCATTTCCGGTTGAATTCTTGATTTATTAGCAAATATCATT
Unaligned ( gi|29 ): TCAATGATTTTTAATTTTAACAGAGTCATGGGCTTTCTTAAGAAATGATAAGTATT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 55555555555555555555555555555555555555555555555 111111111 1111111111111 111111111 1111111 111111111111111111111111111111111111111111111111111 2222222222222222222222222 222 1 5555555555555555555555555555555 111111 6666666666666666666666 33333333333333333 222222 33333333 111 11 77777777777777777777777 333333 1 11 1 222222 4444444 1 33 33333
lowQualScore : 3 55 55 33333333333333333333333333333333333333333333333 4 2 55 1 444 888888888 2 22 3333333333333 444 777777 5555 2 1 1 2 0 99999999 2 2 2 8888888 33 2 444 2 000000000 2 8888888 66666 444 2 2 888888888888888888888888888888888888888888888888888 33 444 555 2 666 4444444444444444444444444 5555 2 33 5555 666666 4 2 777777 444 2 888 0 111 33 2 33 999999 33 0 2 2 2 2 33 7 1 5 2 2 2 2 666 1 6666666666666666666666666666666 666 000000 5555 5 444 33 2 2 2 2 2 2 1 2 2 7777777777777777777777 3 3 3 4 4 666 1 44444444444444444 444444 1 0 22222222 0 77 777 33 3 1 1 66666666666666666666666 22 1 1 000000 1 1 5 88 1 3 6 888888 9999999 3 0 0 0 0 44 3 55555
lowQualScore : . .. .. ............................................... . . .. . ... ......... . .. ............. ... ...... .... . . . . . ........ . . . ....... .. . ... . ......... . ....... ..... ... . . ................................................... .. ... ... . ... ......................... .... . .. .... ...... . . ...... ... . ... . ... .. . .. ...... .. . . . . . .. . . . . . . . ... . ............................... ... ...... .... . ... .. . . . . . . . . . ...................... . . . . . ... . ................. ...... . . ........ . .. ... .. . . . ....................... .. . . ...... . . . .. . . . ...... ....... . . . . . .. . .....
lowQualScore : 1 00 00 99999999999999999999999999999999999999999999999 7 5 99 0 111 888888888 4 66 8888888888888 444 222222 3333 5 5 1 1 5 77777777 5 5 5 1111111 44 4 444 5 000000000 5 1111111 22222 444 5 4 000000000000000000000000000000000000000000000000000 44 444 888 5 000 6666666666666666666666666 0000 4 22 0000 888888 7 1 222222 444 7 222 8 000 77 5 44 111111 44 4 5 5 5 5 44 5 0 0 5 5 5 5 999 6 0000000000000000000000000000000 555 000000 0000 3 444 44 4 7 7 9 9 9 7 9 9 2222222222222222222222 1 1 3 5 5 444 3 88888888888888888 333333 8 8 88888888 2 00 555 88 2 0 0 55555555555555555555555 00 0 0 000000 0 0 5 55 0 3 7 777777 0000000 3 7 7 7 7 00 7 77777
consensus : GTTATGTTTTCGACC--G--A--CGGTATACCGATATTG---C--GAT-TT-----------------ANGTTTTCGACCGA-G--TAAT---AC---------GGTAT-TCGACCGAGAGGTAC-------------T---GTC------TTCGACAGACG----CA-TTTTATCAGGGTTACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAA---AA-GTT---------TA-A----T--ATACAT-----AAA---T-ANA--------------AT-------------------A---------------GG--TAC---TGT-T-T-T-T-ATG---T---T-------GTGTG--T--GT----TGTTATTG-T--A----TA------TTTA-ACGACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAAGAAAATGTGAAT--TT-A--TTGT-----TA--AAAAATCAGA-AATTA-AATGT-T-TAATAC--AATGTATTTTAAT-GTATTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGT---------T---------TC---------GA---AT------GT----ATAT---TTC--C-TGTGATACGGTTTTCGACGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCGATACTCATTCA-GGAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GCGTAAT-ATCTA-GAA-TCTTT-AATG-ATC-ATTTA-AAGACGTTTTCACATTATA-TAATACA-TTTTGTANTACTTAAACTGCCATATC---TACTTACCATGCAGATA--C-TATCTT--CAA--AGTGCAT--AG--ACTTATAAT----G---ATATAAATAGTGCATGNAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTTTCTCATATCAGTTNATTTATACTTCTATTCATNTGTAAACATTTGTAAAAAGTAAACGTCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACANNGGAGTGTGTCAGCNTCCGATATTAATAATTTAATATCTACACTTGTNCACAAACATACTAATTCGGGCTCATAAAGCAGANAGGGTATTTATTATTATCTAAATTATTGCAATTTATTCTATTTNTATAAAATCAATGTCGAAAATGCTTGTTAATGAAATTNAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATG-TACTGTATATGAATATTGTCGTTTT-A-TA-GAAA-AGTAGACGATTTCAGTACATATCCTGTATACGTTATCGAACGAGAACTAAGAAGTGATAGATCTATCATCACGCGTGATGAAGCCTCGATGACAA-TTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGGGACATCGAAAGCAATTA----TTTTTTAGATC
Reference ( family-584 ) : GTTACGTTTTCGACC--G--A--CGATATACCAATATTG---C--GAT-TT-----------------ATGTTTTCGACCGA-G--TAAT---AC---------GGTAT-TCGACCGAGAGGTAC-------------T---GTC------TTCGACAGACG----CA-TTTTATCAGGGTTACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAA---AA-GTT---------TA-A----T--ATACAT-----AAA---T-ATA--------------AT-------------------A---------------GG--TAC---TGT-T-T-T-T-ATG---T---T-------GTGTG--T--GT----TGTTATTG-T--A----TA------TTTA-ACGACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAAGAAAATGTGAAT--TT-A--TTGT-----TA--AAAAATCAGA-AATTA-AATGT-T-TAATAC--AATGT-TTTTNAT-GTATTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGT---------T---------TC---------GA---AT------GT----ATAT---TTC--C-TGTGATACGGTTTTCGACGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCGATACTCATTCA-GGAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GCGTAAT-ATCTA-GAA-TCTTT-AATG-ATC-ATTTA-AAGACGTTTTCACATTATA-TAATACA-TTTTGTANTACTTAAACTGCCATATC---TACTTACCATGCAGATA--C-TGTC-T--CAA--AGTGCAT--AG--ATTTATAAT----G---ATATAAATAGTGCATGNAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTTTCTCATATCAGTTNATTTATACTTCTATTCATNTGTAAACATTTGTAAAAAGTAAACGTCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACANNGGAGTGTGTCAGCNTCCGATATTAATAATTTAATATCTACACTTGTNCACAAACATACTAATTCGGGCTCATAAAGCAGANAGGGTATTTATTATTATCTAAATTATTGCAATTTATTCTATTTNTATAAAATCAATGTCGAAAATGCTTGTTAATGAAATTNAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGCCGCTGTATATGAATATTGTCGTTTT-A-TA-GAAA-AGTAGACGATTTCAGTACATATCCTGTATACGTTATCGAACGAGAACTAAGAAGTGATAGATCTATCATCACGCGTGATGAAGCCTCGATGACAA-TTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGGGACATCGAAAGCAATTA----TTTTTTAGATC
gi|1 : GTCAC--TTCCGAAC--G--C--TGATATACCCGAACTG---T--GAT-TT-----------------ATGTTTTCGACCGA-G--TAAT---AC---------GGTAT-TCGTCCGAGAGATAC-------------T---GTC------TTCGACAGACG----GAATTTTA-AAGGGTAAGTAACTTTGAAGGTA--------TTATTTTT-CATGAAA-TAAAT-GT-------GAAAATACACGA--TAT-ACGTCGCAA---AA-ATT---------TG-A----T--AAACAT-----AAA---T-ATA--------------AT-------------------A---------------GG--TAC---AGA-T-T-T-T-ATG---T---T-------GTCTG--C--GT----TGTTATTG-T--A----T-------TTTA-ACACCGAACA------CTAGT---AGAATTGCAAAAACTG-CGTTTTTATCAAGTAAATGTAAACAGTT-A--TTGCCTTTCTA--CAAAATCAGA-AATTA-AATGT-T-TGATAG--AATGT-TTGTTTT-GTATTTTGC-ATAA-A-ACAATTG-AATAA---CAATACA--------------T---------TC---------AA---AA------AT----ACAT---TTC--C-TATGATTCGATGTTGGACGTTGTTTAAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCAATACTCATCCA-GGATTTGTGTATACATTCTGTT-GATGAATAAAA-TGTATTC-GCGTAAT-ATTTA-AAAATTCTT-AATG-ATCGATTTA-AAAATGTTTCCACAT-ATA-TAATACA-TTTTGAAATACTTATACTGCTAT-CC---CGCTT-TCTTGCATATAGCC-TGTC-T--CAG--AGTGCAT--AC--ATTTATAAT----G---ATACAAACAGTGTGTGAAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTGTCTCATATCAGTTTATTTATATTTCTATTCATTTGTAAACATTTGTAAAAAATAAACATCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACAGTGGAGTATATCAGCATCCGATATTAATAATTTAATATCTACACTTATTCACAAAC------ATTCGGGCTCATAAAGCAGACAGGGTATTTATTATTATCTAAATTATTGCAATTTATTTTATTTATATAAAATC-ATGTCGAAAATGCTTATTAATGAAATTAAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATG-TACT-TGTATGAATATTGTTGTTTTAA-TA-GGAATAGTAGATGATTTCAGTACATATCCTGTATATGTTACCGAACGAGAACTAAGAAGTGATAGATCTATCATCATGCGTGATAAAGCCTTAATGACAATTTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGTGACACCGAAAGCAATTACTAGTTTTTTAGATC
gi|10 : GGTATACCAAAATTG---C--GTT-TTTTACTGTACATGCCCTCATGTTTTCGACCAA-G--TAAT---AC---------GGTAT-TCGACCGAGCGATAC-------------T---GTT------ATCGACAGACG----CT-TTTTATCAGGGTAACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACAG--CAG-TAGTCGCAA---AA-GTT---------TA-A----A--TTAGAT-----TAA---T-AGA--------------ATGCATACGAATTATGT----A---------------GG--TTC---TGT-G-T-TATGATG---G---T-------GTGTG--TCTGT----TGTTATTG-T--A----TA------TTTA-ACGACAAACT------CAAGG---GGAACTGCAAAAACTT-CGTTGTCATAAAGAAAATGTGA-T--TT-A--TTGT-----AA--AAAAATCATA-ACTTA-AACGT-T-AAATAC--AATGTATTTTAAT-GTATTTCGC-ATAA-A-ACAATTG-AATAA---CAATGCAATAAT---------T---------TC---------GATATATTCGAAGGT----AAAT---TTT--C-TGTGATACCGTTT-CGACGTTATTGGAAATTGGCCTGTAAGG-TTTTCGTCAT-TGATCGATTGGGTATTCGAT---------------TGTATTTACATTTTGTT-AATGAATAAAA-TGTTTAT-GCGTAAT-ATCT-------------ATGCAT--ATTTA-AAGATGTTTTCACATCATA-TAATACA-TTTTGTA
gi|11 : GTTACCTTTTCGACC--G--A---GACGTAC-----TCG---C--T-T-TC-----------------AGGTTTTCGACCGA-G----AT----C---------GGCAT-GCGACCGAGATGTAT-------------T---GTT------TTCGACAGGCG----CA-TTTAATCAGGGTTACTGACTTTAAGGGTA--------TTATTTTT-CATGAAA-TA-----T-------AAGTATACACAA--TAC-TAGTAACAA---AA-GTT---------TGGA----T--A-ACAT-----AAA---T-AAA--------------ATTTATACGAATTATACTGGCA---------------GGCCTAC---TGT-T-T-T-T-ATGGC-T---T-------GTGTC--T--GT----TGTTATTG-T--A----TA------TTTA-ACGGCGAACA------CTAGT---AGAATTGCAAAAGCTT-CGTTTTCAACAAG-AAATGTG-AT--GT-G--TTGT-----AA--AGAAATCAGA-AATTA-AATGT-C-AAATAC--AACGTATTTTGAT-GTATTTCGCAAAAA-A-ACATTTG-AATAA---CATTGCAATAGT---------T---------TC---------AAT--AT------ATTCGAATATAAATTC--T-TGTGATACGGTTTTCGACGTTACTGGAAAAGTACGGGTTCGGTTTTTTGTCAT-TGATTGCTACGGTATTCGATACTCTTTAA-GGAATTGT
gi|12 : gtggataggcctatattgtgaGATATACCAATATTG---C--TAT-TT-----------------ATGTTT
gi|12 : TTATGTTTCTGACC--G--A--------AACGGTACT----C--GCT-CTC----------------AGATTTTCAACCGA-G--TAAT---AC---------GG-ATATCGACCGATAGATAC-------------T---GTC------TTTGACAGGCG----AA-TTTCATTTTGATTACTGACTTTAACAGTT--------TTATTGTT-CCTGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAAAATAA-GTT---------CA-AATTGC--ATATAT-----AAAATGT-ATATGAATTAT------GT-------------------A---------------GG--TAC---TGT-T-T-T-A-ATG---T---TTTATGGCGTGTGTCT--GT----TGTTATTG-C--A----TA------TTCA-ACGGCGAACA------CTAGT---GAAATAGCAAAAACTT-CATTTTCATCAAGAAAATTTG-AT--TT-A--TTGA-----GA--AAAAGAGAGA-AATTA-AATGA-T-GAATACATAATA--TTTTAAT-GAATTTCGC-ATAA-A-ACATTTG-AATAT---CAATGCAACAGT---------T---------TC----------A---AT------AT----ATctgaccgaaacggtactcgctctcagattttcaaccgagtaatacggatatcgaccgatagatactgtctttgacaggcgaatttcattttgattactgactttaacagttttattgttcctgaaataaatatgaatatacacgatattagtcacaaaataagttcaaattgcatatataaaatgtatatgaattatgtaggtactgttttaatgttttatggcgtgtgtctgttgttattgcatattcaacggcgaacactagtgaaatagcaaaaacttcattttcatcaagaaaatttgatttattgagaaaaagagagaaattaaatgatgaatacataatattttaatgaatttcgcataaaacatttgaatatcaatgcaacagtttcaatatattcga
gi|13 : gatataccaatattgctatAT--TT-A--TTGT-----TA--AGAAATCAGA-AATTA-AATAT-T-TAATAC--AATGCATTTTAAT-GTATTTCGC-ATCA-A-ACATTTG-AATAA---CAATGCAATAATATA------T---------TG---------TA---AT------GA----TTAT---TTC--C-TGTGATACGGTATTCGACGTTATAAGAAAATGGCCGGTACGA-TTTTCGTCAT-TGATTGATACGGCATTCGATACTTATTCA-AGAATTGTATTCACATTTCGTT-AATTAAAAAAA-TA-TTGT-GCATATT-GTATATGAC-TCTTT-AATG-ATCGATTT--AAGACATTTTCACATTAAA-TAATACC-TGTTGTATTACTTAAACTGCCATATC---TACTTACCATGCAGATA----TATC-TTCCAAC-AGTGCATTGTG--ACTTATtcga
gi|14 : g-TGTGATACAGTTTTCGACGTTGTTGGAAAATGACCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTTGATACTCATTCA-GAAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GTGTAAT-ATCTATGAA-TC--------------TTTA-AAGACGTTTTCACATTATA-TTATACA-TTTTGTAATACTTAAACTGCAATATC---TACTTATCATGCAttgttcttcaatcacaatcatatagtatcgga
gi|15 : ATAAACCAATATTTT--C--GAT-TT-----------------ATGTGTTTGACCGAGG--CGGT---ACTCGCTCTCAGGTTT-TTGACTGAGTTAAAC-------------G---GTA------TTCGACCGAGGGGTACA-TTTTAcagtgtcatgtaactaagtcactagcatgcagatatctcttcaaacagtgcattgcgacttgtgtgttcttcaaacataattacgttgtatcggagtatg
gi|15 : tgattgtgcttttatggcttatataatgtcatgttccaacgaaagttgcatttccggccgggacctcgattaattaccaaatataattaccacagtgaTTATGTGTTTGACC--G--A--GG------CGGTACT----C--GCT-CTC----------------AGGTTTTTGACTGA-G--TTAA---AC---------GGTAT-TCGACCGAGGGGTACATTTTAAAAAGGGT---GTCACCTGTTTTGATGTATA----TG-TTTCGTTAAGG----TGATTT-----GTC--------ATATTTTT-TTTAAAAGTAAATAAT-------AGATAT---CGA--TAT-aaaagggtgtcacctgttttgatgtatatgtttcgttaaggtgatttgtcatattttttttaaaagtaaataatagatatcgatatgatccagcgaatataagttc
gi|16 : tgattgtgcttttatggcttatataatgtcatgttccaacgaaagttgcatttccggccgggacctcgattaattaccaaatataattaccacagtgaataaaccaatattttcgatATATACCAATATTG---C--GAT-Tgatccagcgaatataagttc
gi|16 : TTATGTTTTCGACC--GTGA--CGGTAC-TCGCTCTTAAGCC--G------------------------GTTATCGACCGA-T--TAAT---AC---------GATAT-TCGACCGAAAGGTAT-------------T---GCC------TTCGACAGATG----CA-TTTCATCAGGGTTACTGACTTTAAA-----------------------TAAAA-TGAAC-AT-------GAATATACACGA--TAG-TAGTCACAA---GA-GTT---------TA-A----A--TTACAT-----AAA---T-TGA--------------AT------------------------------------G--TA------T-A-T-T-A-AT-------------------TA--T--GT----TTTTATTG-T--A----TA------TTTA-ACGACCAACA------CTAGT---ATAATTGCAAAAACTT-CGTTTTatgttttcgaccgtgacggtactcgctcttaagccggttatcgaccgattaatacgatattcgaccgaaaggtattgccttcgacagatgcatttcatcagggttactgactttaaataaaatgaacatgaatatacacgatagtagtcacaagagtttaaattacataaattgaatgtatattaattatgtttttattgtatatttaacgaccaacactagtataattgcaaaaacttcgttttagttttagtatttattttaaag
gi|17 : atataccaatattgcgaTTATGTTTTCGACC--G--AGTCGGTAC-------TCG---C---AC-TC-----------------AAGTTTTCGACCGA-G--TTGT---AC---------GCTAT-TCGATCGAGATGTAC-------------T---GTC------TTTGCCGGACG----CA-TTTTATCAGGGCTAACGACTTTG--------------------TT-CATGAGA-TAAAT-AT-------GAATATACACGA--TAT-TAGACACAC---AA-TTT---------TT-A----A--ACACAT-----AGA---T-AGA--------------AT------------------------------------G--TA----TAT-GAC-T-T-ATG---TAGGT-------ATGTA--T--GT----TCTTATTG-T--A----TA------TTTA-ACAACGAATA------TTAGTAAAGGAATTGC-AAAACTT-TGTTTTCAagttttagtatttattttaaag
gi|18 : tgcatataccagctttgtgct--T--GC----TGTTATTG-CTAA----TA------TGTACAC------TA------CTGGT---GGGCGTTCAAAAACTG-AGTTTTTGTCAATAAAATGT---T--GT-AAGTTGT------A--AACATTTAGATAAGTA-AATGT-TATAATA----AT------TAAT-GCATTTCGC-ATAA-ACACTTTTG-AATAA---CGATGCAATAAT---------T---------TC----------A---AT------AT----A------TTC--G-T-TTATATAGTTTTaa
gi|19 : tgctatAT-TAATTACAT---AA-ATA---------TA-A----T--GTATAC-----GAA---TTATG--------------CC-----------------------------------GG--TGC---TGT-G-T-T-T-AT-------------------CG--T--GT----TGTTATTGAT--ACTCGTA------TTTA-ACAACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAGGAATATGTG-AT--TT-A--TTG------TA--AAAAATCAGA-AATTA-AATGA-A-TAATTC--AATGTATTCCAAT-GTATTTCGT-ATAA-A-A----TGCAATAGTTTCAATATAA-----------------------TC---------GA---AT------GT----A-AT---TTT--CGTGTGATATCGTTTTCGGCGTTATTGGAaatgagactgtattcggagcaaagtcccggcatcaaaacgtatatacacaaatgcaatacttaattggaagactatttcacatcacattggt
gi|2 : gc-GTT---------TA-G----T--ATACAT-----AAA---T-ATA--------------ATGTATATGCATTATAT----A---------------GG--TAC---TGT-T-T-T---ATG---T---T-------GTCTG--TCCGT----TGTTATTG-T--A----CT------TTTA-ACACCGAACA------CTAGT---AGAATTGAAAA
gi|2 : -A--TTG-------A--AAATATCAGA-AATTA-AATGT-T-TAATAC--AACGT-TTTTATT-GTATTTTGA-ATAA-A-CCAATTG-AATAA---CAATGCAATAGT---------TATAATATATTC---------GA---AT------AT----ATAT---TTC--C-GATGTTACGGTTTTCGACGTTGTTGAAAAATGGACGGTACGG-TTTTCGCCAT-TGATTGATACGGTTTTCGATGCTCATCCA-GAATTTGTATATACATTCTGTT-ATTGAATAAAA-TGTATTT-GCGTAAT-ATCTAAGAA-TTTTT-AATG-ATCTATTTA-AAAATGTTTTCACAT-ATA-TAATACA-TTTTGAAATACTTAAACTGCTATCCCGCTTTCTTAC-ATGTTGC----C-TGTC-T--CAA--AATGCAT--A----------AT----G---ATATAAATAATGCATGGAATATAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGTATTTTCTCATATCAGTTGATTTATACTTCTATTCATGTATAAACATTTGTAAAAAGTAAACGTCATAATCTTGT-----------------------GCGTGTTACACAGGAGTGTGTCAGCCTCCGATATTAATAATTTAATATCTACACTTGTGCACAAACATACTAATTCGAGCTCATAAAGCAGAGAAGGTATTTATTATTATTTAAATTATTGCAATTTATTCTATTTTTATAAAATTAATGTCG--AATGCTTGTTAATGAAATTTAAATACTCTTTTGAAG-CTAGTTAATCTTTGATTGGATTGTG-TAC-GTATATGAATATTGTCGTTTT-------AAA-AGTAGATGATAACAGTACATATCCTGTATACGTTATCAAATGAGAATTAAGAAGTGATAGATCTATCATCACATGGGATGAAGCATCGATGACAAGTTCAGTTTTTACAAGTTTCCTATATTTAATTGTATAACTGGGGACATCGAAAGCAATTA----TTTTtatcagaaattaaatgtttaatacaacgtttttattgtattttgaataaaccaattgaataacaatgcaatagttataatatattcgaatatatatttccgatgttacggttttcgacgttgttgaaaaatggacggtacggttttcgccattgattgatacggttttcgatgctcatccagaatttgtatatacattctgttattgaataaaatgtatttgcgtaatatctaagaatttttaatgatctatttaaaaatgttttcacatatataatacattttgaaatacttaaactgctatcccgctttcttacatgttgcctgtctcaaaatgcataatgatataaataatgcatggaatataatttgcatctcattttcgtagtcagtgttgtattttctcatatcagttgatttatacttctattcatgtataaacatttgtaaaaagtaaacgtcataatcttgtgcgtgttacacaggagtgtgtcagcctccgatattaataatttaatatctacacttgtgcacaaacatactaattcgagctcataaagcagagaaggtatttattattatttaaattattgcaatttattctatttttataaaattaatgtcgaatgcttgttaatgaaatttaaatactcttttgaagctagttaatctttgattggattgtgtacgtatatgaatattgtcgttttaaaagtagatgataacagtacatatcctgtatacgttatcaaatgagaattaagaagtgatagatctatcatcacatgggatgaagcatcgatgacaagttcagtttttacaagtttcctatatttaattgtataactggggacatcgaaagcaattatttt
gi|20 : gtttagtatacataaatataatgtatatgcattatataggtactgttttatgttgtctgtccgttgttattgtacttttaacaccgaacactagtagaTTTTTGAGTACACTTCAT-TTTAACCTTGCTATGCCGCTGTATATGAATATTGTCGTTTT-ACTACAAAA-AGTAGACGATTTCAGTACATATCCTGTGTATGTCATCGAATGAGAACTAAAAAGTGATAGATCTATCATCACGTCTGATGAAGCCTCGATGACAA----------------TTTCACATATTTAACTGAATAACTGGGGACATCGTAAGCAATTA------TTTTAGATC
gi|21 : TT-AATGAATAAAA-TGTTTTTTGCGTAAC-ATCT---------TT-G--G-ATC--TTTA-AAGGCGTTTTCACATTATA-TTAAACA-TATTGTA----TTAAACTTCCATATC---AACCTACCATGCAGATA----TATT---------AGTGCAT--ttttt
gi|22 : AT--TA-A--TTGT-----TA--AAAA-TAAAA-AAATA-AACGT-T-TAATAC--AATGT-ATTGTATTGTTTTTCTC-ATAG-A-ACATTTG-AATAA---CAATTCAATAGT---------T---------TCAATATATT-GG---ATTG----GT----ATAT---TTT--A-CATGATATAATATCGGATGTTATTGGAAAATGGACAGAATGG-TTTTCGTCACATGATTTATGCGGTATTCGATACTCATtgtaacttgtgtgtttgttattcaatcataatcataataatagtatcgaagcatgtccgtgcgtctgtccgtccgatattgtccgtgta
gi|23 : gATGTAATA-----------T---------TC---------GA---AT------AT----ATAT---TTC--C-TATGATACGGTATTCGACGTTATTTGAAAATGGACGGCACGG-GTTTCGTCAT-TGACTGATACGGTATCCGATACTCATC------------TTTACAATTTGTT-GATGAGTAAAA-TGTATTT-GCTTAAT-cattata
gi|24 : catagaattgtgatatttTTATGATTTCGACC--G--AGACGGT-------TCTCG---C--T-C-TC-----------------AGGTTTTCGACAGA-G--TAAT---AC---------GGTAT-TCGTAAGAGAGGTAT-------------T---GTC------TTCGGCAGACA----CT-TTTCATAAAAGTAAGAGACTTTGAGGGTA--------TTATTTTC-CATGAAA-TAAAT-AT-------GAAAATACACGA--TAT-TAGTCGCAA---gattattgaatactcaactgtagcatctcctaatattaa
gi|26 : tatataccagaactgcgat-CATG----TAAAT-AC-------GAATATACACAA--TAA-TAGTCACAA---AA-GTT---------TA-A----A--TTACAT-----CAA---T-AAA--------------ATGCATATGAATTATGT----A---------------GG--TTC---TGA-T-T-A---ATG---G---T-------GTGTG--TCTGG----TGTTATTG-T--A----TA------TTTA-ACAATGAAC
gi|3 : acagttttcgctactataTTATGTTCTCGACC--G--A---GA-----CGGTACT----C--GCT-TTC----------------AGGGTTTCGACCAA-G--TGATGATAC---------GATAT-TTGAGTAAGATGTAC-------------TACTGTC------TCCGACAGACA----CA-TTTTATCAGAATTATTGACTTTGAAGGTA--------CTATTTTT-CACGATA-AAAAT-AT-------GAATATACACGA--TAT-TTGTCACAA---ATTGTT---------TA-A-------ATACAT-----AAA---T-AGA--------------AT-------------------GTATATGAATGATGTGAG--TAC---TGT-G-T-T-T-GTGGGGT---T--------TGTA--T--GT----TGTAATTG-T--A----TA------ACTA-ACTACAAACA------TAAGT---GAAACTGCAAAAACTT-T----------------TGT-AAT--TT-A--TT-T-----TA--AAAAATCGGA-AATCG-AATGT-T-TAAAAC--AATGTATTGTTTT-GTATTTCGC-ATAA-A-ACATTTG-AATTA---AAATGCAATAGT---------T---------TCAATATATTCGA---AT------TC----ATAT---TTC--A-AATGATACGGTATAAGGCGTTATTGGAAAA-GGACGGAACGG-TTTTCGTCAT-TGATTGATATTACATTCGGTACTCA-TCATGGAATTGTACTTACATTTTGCT-GATGAGCAAAACTAAATTT-GCTTAATGATCAT-GAA-TCTTT-AATG-GTCGATTT--AAGACGTTCCCACA-TATA-CAGTACA-TTTTGTAATCCTTAGACTGCCATATC---TACTTGTCATACACATA--C--ATCTT--CAAACATTGCAT--TGTAACCTATGATCTTCGACCACATAAATATAGTAT---CTGTTACTGGCATTGTTTTATAAATTCTTTGTC-GTTTTCCATTTGTTCATACCtag
gi|30 : tggatataccaatatgcgatATACCAATATTG---C--GAT-TT-----------------ATGTTATCGACCG-------AT---AC---------GGTAG-TCGgt
gi|4 : agtgtagTATGTTTTCGACC--G--AGACGGTATAC-------G---C--T-C-TC-----------------AGGTTTTCGACCGA-G--TAAT---AC---------GGTAT-TCTTTCGAGATGTAT-------------T---GTC------TTCGACAGACG----AA-TTTTATTAGGGTAAGTGTTTTTTAAGGTA--------TAATTTT--CATGAAA-TAAAT-AT-------GAAAATACACGA--TAT-TAGTCGCAA---AA-TTT---------TA-A----T--ATACGT-----AAA---T-ATA--------------AT------------------------------------G--TACAAATAT-G-CAT-T-ATA---T---A-------G---G--T--AC----TATTATT------------------TTTACAC--CGAACA------CTAGT---AGAATGGCAAAAACTTGCGTTTTCAT----GAAATGTTA-T--TA-A--TT-T-----TA--AAAAATCAGA-AATTA-AATGT-T-TAATAC--AATGT-TATTATT-GTATTTTGC-ATAA-A-ACAATTG-AATGA---CAAGTCAATATT---------T---------TCTATATATTCGA---AT------AT----GTTT---TTT--C-CATGATACGTTTTTCGACGTT---GAAAAATGGACGGTACGG-TTTTCGTTAT-TGATTGATACGATTTTCAATACTCATCCA-GGATTTGCATATACATTCTTTT-TATGAATAAAA-TGTTTTT-GCGTTAT-ATTTAAGAA-TCTTT-AATG-TTC-GATTACAACATGTTTCCACA-TATA-TAATACA-TTTTGAAATACTTAAACTGCTAT-CC---TGCTT-TCATGCATGTAGCC-TGCC-T--CAG--AATGCAT--AG--ATTTATAAT----A---ATATAAATAGTGCATGCAATGTAATTTGCA---TCTTAT--TTTCGTAGTCAGTGTTGCATTTTCTTATATCActct
gi|5 : atggatatacaaaaattgcgatgTTATGTT--CGACC--G--A---GA-----CGGTACT----C--GCTCTC-----------------ACG-TTTCGACTGA-G--TAAT---AC---------GATCT-TCGACAGAGAGTTAC-------------T---GTC------TTCGACAGATG----CA-TTTAATAAGGGTTACTGGCTTCAAAAGTA--------TTATTTTT-CATCAAA-TAAAT-AT-------GAATATACACTA--TAT-TAGTAACAA---AA-ATT---------TA-A----T--TTACAT-----AAA---T-ATAGTGTATATGCATATGT-------------------A---------------TG--TAC---CAT-T-T-T-T-ATG---T---T-------GTGTGTCT--GT----TGTTATTG-T--A----TA------TTTA-ACGACGAACACATAGTCTAGT---GGAATTGTAAAAACTT-C-----------GAAAAC-TAAA----------TGT-----TA--AA------------TACAATG--------------TGT--TTGAAT-GAATTTCGC-ATAA-A-ACATTCG-AAAAA---CATTGCAATAGT---------TTCAATACAGTC---------AA---AT------GT----AAGT---TTT--C-TGTGATACGGTTTTCGACATAAGTAGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTTTTCGATTCTCATTCA-GGAATTGTATTTATATTTTGTA-AGTGAATAAAA-TGTTTTT-GCGTAAT-ATC-------------AATGAATC--TTTA-AATACGTTTTTACATTATA-TAATACA-TCTTGTATTACTTAAACTGCCATACC---GACTTACCATGCAGATA----TGTCTT--CAA--A
gi|6 : tgatatacaaacattacgat---AC---------GTTAT-TCAAGCGAGATA-AC-------------T---GTC------TTCGACAGACG----CA-TTTTATCAGGGCTACTGACATTAAAGGTA--------TTATTTTT-CATGAAA-TGACT-ATCGCAAAAGAATGTATATGAATTATGTAGTTACT-------GTT---------TT-A----TGNNNNNNN-----NNN---N-NNN--------------NN-------------------N---------------NN--NNN---NNN-N-N-N-N-NNN---N---N-------NNNNN--N--NN----TGTTATTG-T--A----TA------TTTA-ACGACGAACA------ATAGT---G------CAAAAACTT-CGTTTTCATCAAGAAAATGTTT-T--TT-A--TTGT-----AA--ATAAA--AGA-AGTTG-AATGT-T-TAATAC--AATGTATTTTAAT-GTATTTCAC-ATAA-A-ACGTTTG-AAAAAA--CAATGCAGTGGT---------T---------TCAATATAATCGA---AT------GT----AAAT---TTTTTC-TGTGATACGGTTTTCGATGTTATTGTAAAATGGCCGGTACGG-CTTTCGTTAT-TGATTGATACGGTATTTGATATTCATTTA-GAAATTGTATTTTCATTTTGTT-AGTAAATAAAA-TGATTTT-GCGTTAT-ATCTA---------T-GA---ATC-A-TTA-AAGACGTTTTCACATTATATTAAT-TATTTTTGTATTACTTAAACTGCCATATC---TACTTACCATGCAGATA--CATAT--T--CAAACAGTGCAT--caatcattgtgacttatatgttcttcacaatcataataaattcttatatttccgtgcgcgagtccatccgatcatgtccgttcgagaactttctcacacgt
gi|7 : ATATTG---C--GAT-TT-----------------ATGTTTTCGACCGA-GA-TGGA---AC---------GG------AAC--AGA-----------------------------------ACAGA-------A-TTTTATCAGGGTTAATGACTTTAAAGGTA--------TTATTTTTTCATAAAA-TAATT-AC-------GAATATACA--A--TAT-TAGTCATAA---AA-GTT---------TA-AATTAC--ATACAC-----AAC---T-GTAT-------------AT-------------------G---------------GA--TAA---TGTAT-G-T-T-ATG---T---TTTATG--GTGTT--T--GTCTTTTGTTATTG-T--A----TA------TTTA-ACGACGAATA------TAAGT---GGAATTGCAACATCTT-CGTTTTCATTAAGAAAATCTTA-T--TT-A--TTGT-----CA--AAAAATCACA-AATTT-AATAT-T-AAATAC--AATGT-TTTTTATTGTATTTCGC-GTAA-A-ACATTTG-AATAA---CAATGCAATAGT---------T---------TCAATATATTCGA---AT------GT----AAAT---T-------GTGACACGATTTCCGACGTTATTGAAAAGTGGCCGGTACTG-TTTTTGTCAT-TGATTGATACGGTAATCGATACTCATTCC-GGAATTGTATTTAC---------------TAAAA-TGTTTTC-GAGAAAT-ATCTA-------------TG-A-------A-ATGACATTTTCACATTATA-TAATACA-TGCTGTATAACTTAAGCTGCCATATC---TATTTACCATACAGATA----TATCTT--CAAACAGGGCAT--tgtgacttgtgtgttcctcaatcacaatcatatagtatcggagaagcccgtgcgtcagtccatccgatcttctctgttctatgactttctcacacata
gi|8 : TTATGTTTTCGACCTAG--A--CGGTA--CC-----TG---CTAGAT-C------------------AGGTTTTTGACCGA-G--TAAT---AC---------AGTAT-TCGACCGAGAGATAC-------------T---GTC------TTCGACAGACG----CA-TTTGAT-------ATT-ACTTTAAACATT--------TTATTTTT-CATGAAA-TAAAA-AT-------TAATATACACAA--TAT-AAGTCAAAA---AA-GTT---------TA-A----A--ATACAT-----CAA---T-AGA--------------ATGTATATGAATTATGT----A---------------GG--TAC---TGT-T-T-T-T-ATG---G---T-------GTATG--TTTGT----TGTTATTG-T--A----TACCAGTTTTTA-ACGAAGAACA------ATTGT---GGAATTGCAAAATCTT-CGTTTTCAT---AAAAATAAGA-T--TT-A--TTGT-----TACAAAAAGTCTGA-CATTA-ACTGT-T-CAATAA--AATGTATTTTAAT-GTATTT-----TAATA-GCATT---GCTAA---TGTTTCAATATA---------T---------TC---------AA---AG------GG----AAAT---TTC--C-TGTGATACGGTTTTCGTCGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGATATTCGATATTCATTCA-CAAATTGTATTTTTATTTTTTTCAATGAATAACC-TA-TTTT-GCGTAAC-ATATATGAG-TCTTTAAAGG-ATC-ATATA-----------TACATTATA-AAATAtgtgccttgtgttcttcaatcacaagcatatagtaccggag
gi|9 : atgaatattgtgatGATATACCAATATTG---C--AAT-TT-----------------ATGTTTTTGACCGA-GACTG-T---ACTCGCTTTCAGGTTT-TTGACAGAGAGATAC-------------T---GTC------TTTGACAGACG----CA-TTTTATCAGGGTTACCGACTT--AAGGTATTATTTTTTTATTTTT-CATACAA-TACAC-AC-------GAATATACACAA--TAT-TAGTCATAA---AA-GTTACATAAATATA-A----T--GTATATCGATGAAT---T-AT---------------GT-------------------A---------------GG--TTT---TGT-T-T-T-T-ATG---G---T-------GTGTGTCT--GT----TGTTATT-------------------------GACAAACT------CTAGT---GGAATTGCAAAAA-----------------AAAATCAGAAC--TTGA--GTGT-----T-----AAAT-------TT---ATGTAT-TGATAT--A-----TTTTAAT-GTCTTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGTTTAATTATAT---------TA---------GA---AT------GT----ATAT---TTC--C-TACGATATGGTTTTCAAAGTTATTGGAAAATGGCCGGTATGG-TTTCCG---T-TG-TTGATACGGTATACGATACTCATTCA-GGAA------------TTTGTT-AATGAACAAAA-TATTTTT-GAGTAAT-ACCTATGAA-TC--------------TTTA-AAGATGTATTCAGATTTTA-TAATACA-TTTTGTATTACTT-AACTGCCATTTC---TACATATCATGCAGACA----TATCTT--CAA--Agtgatttt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TAGACTGACTGGTGCTATAACAACCAATCATCAAACAGTGTAGACTGACTGGTGCTATAACCTAGTATGTTCTTCAAGCACAATCATACTGTATCTGTTATTGGCCTAGTTTAACAAATTCTGCGTCGTATTTCATTTGGCTCTCCCGTCA
Unaligned ( gi|27 ): TTGTTTCATGCTCTTGCGGGGGTCTTATCTTGTGTTTACGTTCTCGTAATCTACACTTCTCATCGCCTCTATTTGTGACTATGTAATAGGTGGTAAGGTCA
Unaligned ( gi|28 ): TGTGTCTTGTATGGCTTATTATGTTTGGTCCCAACAAAAGATGCATTTCCGGTTGAATTCTTGATTTATTAGCAAATATCATT
Unaligned ( gi|29 ): TCAATGATTTTTAATTTTAACAGAGTCATGGGCTTTCTTAAGAAATGATAAGTATT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 777777777777777777777777777777777777777777 111111111 1111111111111 111111111 1111111 222222222222222222222222222222222222222222222222222 2222222222222222222222222 222 5555555555555555555555555555555 111111 6666666666666666666666 2222 22 333333 33333333 111 11 77777777777777777777777 333333 1 11 1 1 11 4444444 1 33 33333
lowQualScore : 55 55 888888888888888888888888888888888888888888 1 66 0 444 000000000 2 1 4444444444444 444 777777 2 0 1 1 2 0 99999999 2 2 2 8888888 33 2 444 2 000000000 2 8888888 444 1 111111111111111111111111111111111111111111111111111 33 444 555 2 666 4444444444444444444444444 5555 2 33 5555 666666 4 2 777777 444 2 888 0 111 33 2 33 8888888 33 0 2 2 2 2 0 3 2 0 2 2 2 2 666 1 6666666666666666666666666666666 666 000000 5555 5 444 33 2 2 2 2 2 2 1 2 2 7777777777777777777777 3 2 3 3 4 4 666 1 6666 444 66 888888 22222222 0 77 777 33 3 1 1 66666666666666666666666 22 1 1 000000 1 1 5 88 1 3 6 3 44 9999999 3 0 0 0 0 44 3 55555
lowQualScore : .. .. .......................................... . .. . ... ......... . . ............. ... ...... . . . . . . ........ . . . ....... .. . ... . ......... . ....... ... . ................................................... .. ... ... . ... ......................... .... . .. .... ...... . . ...... ... . ... . ... .. . .. ....... .. . . . . . . . . . . . . . ... . ............................... ... ...... .... . ... .. . . . . . . . . . ...................... . . . . . . ... . .... ... .. ...... ........ . .. ... .. . . . ....................... .. . . ...... . . . .. . . . . .. ....... . . . . . .. . .....
lowQualScore : 00 00 111111111111111111111111111111111111111111 9 33 7 444 000000000 5 7 7777777777777 777 777777 7 1 5 1 1 5 77777777 5 5 5 1111111 44 4 444 5 000000000 5 1111111 444 0 222222222222222222222222222222222222222222222222222 44 444 888 5 000 6666666666666666666666666 0000 4 22 0000 888888 7 1 222222 444 7 222 8 000 77 5 44 8888888 44 4 5 5 5 5 9 4 5 6 5 5 5 5 999 6 0000000000000000000000000000000 555 000000 0000 3 444 44 4 7 7 9 9 9 7 9 9 2222222222222222222222 1 3 1 3 5 5 444 3 8888 666 00 777777 88888888 2 00 555 88 2 0 0 55555555555555555555555 00 0 0 000000 0 0 5 55 0 3 7 3 00 0000000 3 7 7 7 7 00 7 77777
consensus : GTTATGTTTTCGACC--G--AG-CGGTACACC-G-TATCGCGATTT-----------------AGGTTTTCGACCGAG--TAAT---AC---------GGTAT-TCGACCGAGAGGTAC-------------T---GTC------TTCGACAGAC-GCATTTTATCAGGGTTACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAA---AA-GTT---------TA-A----T--ATACATAAA---TANA--------------AT-------------------A---------------GG--TAC---TGT-T-T-T-T-ATG---T---T-------GTGTG--T--GT----TGTTATTG-T--A----TA------TTTA-ACGACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAAGAAAATGTGAAT--TT-A--TTG-----TTA--AAAAATCAGA-AATTA-AATGT-T-TAATACAATGTAT-TTTAATGTATTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGT---------T---------TC---------GA---AT------GT----ATAT---TTC--C-TGTGATACGGTTTTCGACGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCGATACTCATTCA-GGAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GCGTAAT-ATCT-A-GAATCTTT-AATG-ATC-ATTTA-AAGACGTTTTCACATTATA-TAATACA-TTTTGTANTACTTAAACTGCCATATC---TACTTACCATGCAGATA--CTATCTT-CAAACAGTGCAT--TG--ACTTATAAT----G---ATATAAATAGTGCATGNAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTTTCTCATATCAGTTNATTTATACTTCTATTCATNTGTAAACATTTGTAAAAAGTAAACGTCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACANNGGAGTGTGTCAGCNTCCGATATTAATAATTTAATATCTACACTTGTNCACAAACATACTAATTCGGGCTCATAAAGCAGANAGGGTATTTATTATTATCTAAATTATTGCAATTTATTCTATTTNTATAAAATCAATGTCGAAAATGCTTGTTAATGAAATTNAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGT-ACTGTATATGAATATTGTCGTTTT-A-TA-GAAA-AGTAGACGATTTCAGTACATATCCTGTATACGTTATCGAACGAGAACTAAGAAGTGATAGATCTATCATCACGCGTGATGAAGCCTCGATGACAA-TTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGGGACATCGAAAGCAATTA----TTTTTTAGATC
Reference ( family-584 ) : GTTATGTTTTCGACC--G--A--CGGTATACC-GATATTGCGATTT-----------------ANGTTTTCGACCGAG--TAAT---AC---------GGTAT-TCGACCGAGAGGTAC-------------T---GTC------TTCGACAGAC-GCATTTTATCAGGGTTACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAA---AA-GTT---------TA-A----T--ATACATAAA---TANA--------------AT-------------------A---------------GG--TAC---TGT-T-T-T-T-ATG---T---T-------GTGTG--T--GT----TGTTATTG-T--A----TA------TTTA-ACGACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAAGAAAATGTGAAT--TT-A--TTG-----TTA--AAAAATCAGA-AATTA-AATGT-T-TAATACAATGTAT-TTTAATGTATTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGT---------T---------TC---------GA---AT------GT----ATAT---TTC--C-TGTGATACGGTTTTCGACGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCGATACTCATTCA-GGAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GCGTAAT-ATCT-A-GAATCTTT-AATG-ATC-ATTTA-AAGACGTTTTCACATTATA-TAATACA-TTTTGTANTACTTAAACTGCCATATC---TACTTACCATGCAGATA--CTATCTT-CAA--AGTGCAT--AG--ACTTATAAT----G---ATATAAATAGTGCATGNAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTTTCTCATATCAGTTNATTTATACTTCTATTCATNTGTAAACATTTGTAAAAAGTAAACGTCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACANNGGAGTGTGTCAGCNTCCGATATTAATAATTTAATATCTACACTTGTNCACAAACATACTAATTCGGGCTCATAAAGCAGANAGGGTATTTATTATTATCTAAATTATTGCAATTTATTCTATTTNTATAAAATCAATGTCGAAAATGCTTGTTAATGAAATTNAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGT-ACTGTATATGAATATTGTCGTTTT-A-TA-GAAA-AGTAGACGATTTCAGTACATATCCTGTATACGTTATCGAACGAGAACTAAGAAGTGATAGATCTATCATCACGCGTGATGAAGCCTCGATGACAA-TTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGGGACATCGAAAGCAATTA----TTTTTTAGATC
gi|1 : TTCCGAAC--G--C--TGATATACCCGA-ACTGTGATTT-----------------ATGTTTTCGACCGAG--TAAT---AC---------GGTAT-TCGTCCGAGAGATAC-------------T---GTC------TTCGACAGACGGAATTTTA-AAGGGTAAGTAACTTTGAAGGTA--------TTATTTTT-CATGAAA-TAAAT-GT-------GAAAATACACGA--TAT-ACGTCGCAA---AA-ATT---------TG-A----T--AAACATAAA---TATA--------------AT-------------------A---------------GG--TAC---AGA-T-T-T-T-ATG---T---T-------GTCTG--C--GT----TGTTATTG-T--A----T-------TTTA-ACACCGAACA------CTAGT---AGAATTGCAAAAACTG-CGTTTTTATCAAGTAAATGTAAACAGTT-A--TTGCCTTTCTA--CAAAATCAGA-AATTA-AATGT-T-TGATAGAATGTTTGTTT--TGTATTTTGC-ATAA-A-ACAATTG-AATAA---CAATACA--------------T---------TC---------AA---AA------AT----ACAT---TTC--C-TATGATTCGATGTTGGACGTTGTTTAAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCAATACTCATCCA-GGATTTGTGTATACATTCTGTT-GATGAATAAAA-TGTATTC-GCGTAAT-ATTTAA-AAATTCTT-AATG-ATCGATTTA-AAAATGTTTCCACA-TATA-TAATACA-TTTTGAAATACTTATACTGCTAT-CC---CGCTT-TCTTGCATATAGCCTGTC-T-CAG--AGTGCAT--AC--ATTTATAAT----G---ATACAAACAGTGTGTGAAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTGTCTCATATCAGTTTATTTATATTTCTATTCATTTGTAAACATTTGTAAAAAATAAACATCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACAGTGGAGTATATCAGCATCCGATATTAATAATTTAATATCTACACTTATTCACAAAC------ATTCGGGCTCATAAAGCAGACAGGGTATTTATTATTATCTAAATTATTGCAATTTATTTTATTTATATAAAATC-ATGTCGAAAATGCTTATTAATGAAATTAAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGT-ACT-TGTATGAATATTGTTGTTTTAA-TA-GGAATAGTAGATGATTTCAGTACATATCCTGTATATGTTACCGAACGAGAACTAAGAAGTGATAGATCTATCATCATGCGTGATAAAGCCTTAATGACAATTTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGTGACACCGAAAGCAATTACTAGTTTTTTAGATC
gi|10 : gtcacGGTATACC-AAAATTGCGTTTTTTACTGTACATGCCCTCATGTTTTCGACCAAG--TAAT---AC---------GGTAT-TCGACCGAGCGATAC-------------T---GTT------ATCGACAGAC-GCTTTTTATCAGGGTAACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACAG--CAG-TAGTCGCAA---AA-GTT---------TA-A----A--TTAGATTAA---TAGA--------------ATGCATACGAATTATGT----A---------------GG--TTC---TGT-G-T-TATGATG---G---T-------GTGTG--TCTGT----TGTTATTG-T--A----TA------TTTA-ACGACAAACT------CAAGG---GGAACTGCAAAAACTT-CGTTGTCATAAAGAAAATGTGA-T--TT-A--TTG-----TAA--AAAAATCATA-ACTTA-AACGT-T-AAATACAATGTAT-TTTAATGTATTTCGC-ATAA-A-ACAATTG-AATAA---CAATGCAATAAT---------T---------TC---------GATATATTCGAAGGT----AAAT---TTT--C-TGTGATACCGTTT-CGACGTTATTGGAAATTGGCCTGTAAGG-TTTTCGTCAT-TGATCGATTGGGTATTCGAT---------------TGTATTTACATTTTGTT-AATGAATAAAA-TGTTTAT-GCGTAAT-ATCT-------------ATGCAT--ATTTA-AAGATGTTTTCACATCATA-TAATACA-TTTTGTA
gi|11 : GTTACCTTTTCGACC--G--A---GACGTAC------TCGCT-TTC-----------------AGGTTTTCGACCGAG----AT----C---------GGCAT-GCGACCGAGATGTAT-------------T---GTT------TTCGACAGGC-GCATTTAATCAGGGTTACTGACTTTAAGGGTA--------TTATTTTT-CATGAAA-TA-----T-------AAGTATACACAA--TAC-TAGTAACAA---AA-GTT---------TGGA----T--A-ACATAAA---TAAA--------------ATTTATACGAATTATACTGGCA---------------GGCCTAC---TGT-T-T-T-T-ATGGC-T---T-------GTGTC--T--GT----TGTTATTG-T--A----TA------TTTA-ACGGCGAACA------CTAGT---AGAATTGCAAAAGCTT-CGTTTTCAACAAG-AAATGTG-AT--GT-G--TTG-----TAA--AGAAATCAGA-AATTA-AATGT-C-AAATACAACGTAT-TTTGATGTATTTCGCAAAAA-A-ACATTTG-AATAA---CATTGCAATAGT---------T---------TC---------AAT--AT------ATTCGAATATAAATTC--T-TGTGATACGGTTTTCGACGTTACTGGAAAAGTACGGGTTCGGTTTTTTGTCAT-TGATTGCTACGGTATTCGATACTCTTTAA-GGAATTGT
gi|12 : gtggataggcctatattgtgaTTATGTTTCTGACC--G--A--------AAC-GGTACT-CGCTCTC----------------AGATTTTCAACCGAG--TAAT---AC---------GG-ATATCGACCGATAGATAC-------------T---GTC------TTTGACAGGC-GAATTTCATTTTGATTACTGACTTTAACAGTT--------TTATTGTT-CCTGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAAAATAA-GTT---------CA-AATTGC--ATATATAAAATGTATATGAATTAT------GT-------------------A---------------GG--TAC---TGT-T-T-T-A-ATG---T---TTTATGGCGTGTGTCT--GT----TGTTATTG-C--A----TA------TTCA-ACGGCGAACA------CTAGT---GAAATAGCAAAAACTT-CATTTTCATCAAGAAAATTTG-AT--TT-A--TTG-----AGA--AAAAGAGAGA-AATTA-AATGA-T-GAATACATAATAT-TTTAATGAATTTCGC-ATAA-A-ACATTTG-AATAT---CAATGCAACAGT---------T---------TC----------A---AT------AT----AT
gi|13 : gatataccaatattgctatAT--TT-A--TTG-----TTA--AGAAATCAGA-AATTA-AATAT-T-TAATACAATGCAT-TTTAATGTATTTCGC-ATCA-A-ACATTTG-AATAA---CAATGCAATAATATA------T---------TG---------TA---AT------GA----TTAT---TTC--C-TGTGATACGGTATTCGACGTTATAAGAAAATGGCCGGTACGA-TTTTCGTCAT-TGATTGATACGGCATTCGATACTTATTCA-AGAATTGTATTCACATTTCGTT-AATTAAAAAAA-TA-TTGT-GCATATT-GTAT-ATGACTCTTT-AATG-ATCGATTT--AAGACATTTTCACATTAAA-TAATACC-TGTTGTATTACTTAAACTGCCATATC---TACTTACCATGCAGATA---TATCTTCCAAC-AGTGCATTGTG--ACTTATtcga
gi|14 : g-TGTGATACAGTTTTCGACGTTGTTGGAAAATGACCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTTGATACTCATTCA-GAAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GTGTAAT-ATCT-ATGAATC--------------TTTA-AAGACGTTTTCACATTATA-TTATACA-TTTTGTAATACTTAAACTGCAATATC---TACTTATCATGCAttgttcttcaatcacaatcatatagtatcgga
gi|15 : TTATGTGTTTGACC--G--A---GG-----C-GGTACT-CGCTCTC----------------AGGTTTTTGACTGAG--TTAA---AC---------GGTAT-TCGACCGAGGGGTACATTTTAAAAAGGGT---GTCACCTGTTTTGATGTAT-ATGTTTCGTTAAGG----TGATTT-----GTC--------ATATTTTT-TTTAAAAGTAAATAAT-------AGATAT---CGA--TAT-cagtgtcatgtaactaagtcactagcatgcagatatctcttcaaacagtgcattgcgacttgtgtgttcttcaaacataattacgttgtatcggagtatg
gi|16 : tgattgtgcttttatggcttatataatgtcatgttccaacgaaagttgcatttccggccgggacctcgattaattaccaaatataattaccacagtgaataaaccaatattttcgatTTATGTTTTCGACC--GTGA--CGGTAC-TC-GCTCTTAAGCC--------------------GGTTATCGACCGAT--TAAT---AC---------GATAT-TCGACCGAAAGGTAT-------------T---GCC------TTCGACAGAT-GCATTTCATCAGGGTTACTGACTTTAAA-----------------------TAAAA-TGAAC-AT-------GAATATACACGA--TAG-TAGTCACAA---GA-GTT---------TA-A----A--TTACATAAA---TTGA--------------AT------------------------------------G--TA------T-A-T-T-A-AT-------------------TA--T--GT----TTTTATTG-T--A----TA------TTTA-ACGACCAACA------CTAGT---ATAATTGCAAAAACTT-CGTTTTgatccagcgaatataagttc
gi|17 : atataccaatattgcgaTTATGTTTTCGACC--G--AGTCGGTAC--------TCGC-ACTC-----------------AAGTTTTCGACCGAG--TTGT---AC---------GCTAT-TCGATCGAGATGTAC-------------T---GTC------TTTGCCGGAC-GCATTTTATCAGGGCTAACGACTTTG--------------------TT-CATGAGA-TAAAT-AT-------GAATATACACGA--TAT-TAGACACAC---AA-TTT---------TT-A----A--ACACATAGA---TAGA--------------AT------------------------------------G--TA----TAT-GAC-T-T-ATG---TAGGT-------ATGTA--T--GT----TCTTATTG-T--A----TA------TTTA-ACAACGAATA------TTAGTAAAGGAATTGC-AAAACTT-TGTTTTCAagttttagtatttattttaaag
gi|18 : tgcatataccagctttgtgct--T--GC----TGTTATTG-CTAA----TA------TGTACAC------TA------CTGGT---GGGCGTTCAAAAACTG-AGTTTTTGTCAATAAAATGT---T--GT-AAGTTG-----T-A--AACATTTAGATAAGTA-AATGT-TATAATA------AT-T--AATGCATTTCGC-ATAA-ACACTTTTG-AATAA---CGATGCAATAAT---------T---------TC----------A---AT------AT----A------TTC--G-T-TTATATAGTTTTaa
gi|19 : tgctatAT-TAATTACAT---AA-ATA---------TA-A----T--GTATACGAA---TTAT--------------GC-------------------C---------------GG--TGC---TGT-G-T-T-T-AT-------------------CG--T--GT----TGTTATTGAT--ACTCGTA------TTTA-ACAACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAGGAATATGTG-AT--TT-A--TTG------TA--AAAAATCAGA-AATTA-AATGA-A-TAATTCAATGTAT-TCCAATGTATTTCGT-ATAA-A-A----TGCAATAGTTTCAATATAA-----------------------TC---------GA---AT------GT----A-AT---TTT--CGTGTGATATCGTTTTCGGCGTTATTGGAaatgagactgtattcggagcaaagtcccggcatcaaaacgtatatacacaaatgcaatacttaattggaagactatttcacatcacattggt
gi|2 : gc-GTT---------TA-G----T--ATACATAAA---TATA--------------ATGTATATGCATTATAT----A---------------GG--TAC---TGT-T-T-T---ATG---T---T-------GTCTG--TCCGT----TGTTATTG-T--A----CT------TTTA-ACACCGAACA------CTAGT---AGAATTG-AAAA
gi|2 : -A--TTG-------A--AAATATCAGA-AATTA-AATGT-T-TAATACAACGT-T-TTTATTGTATTTTGA-ATAA-A-CCAATTG-AATAA---CAATGCAATAGT---------TATAATATATTC---------GA---AT------AT----ATAT---TTC--C-GATGTTACGGTTTTCGACGTTGTTGAAAAATGGACGGTACGG-TTTTCGCCAT-TGATTGATACGGTTTTCGATGCTCATCCA-GAATTTGTATATACATTCTGTT-ATTGAATAAAA-TGTATTT-GCGTAAT-ATCT-AAGAATTTTT-AATG-ATCTATTTA-AAAATGTTTTCACAT-ATA-TAATACA-TTTTGAAATACTTAAACTGCTATCCCGCTTTCTTAC-ATGTTGC----CTGTCT--CAA--AATGCAT--A----------AT----G---ATATAAATAATGCATGGAATATAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGTATTTTCTCATATCAGTTGATTTATACTTCTATTCATGTATAAACATTTGTAAAAAGTAAACGTCATAATCTTGT-----------------------GCGTGTTACACAGGAGTGTGTCAGCCTCCGATATTAATAATTTAATATCTACACTTGTGCACAAACATACTAATTCGAGCTCATAAAGCAGAGAAGGTATTTATTATTATTTAAATTATTGCAATTTATTCTATTTTTATAAAATTAATGTCG--AATGCTTGTTAATGAAATTTAAATACTCTTTTGAAG-CTAGTTAATCTTTGATTGGATTGTGT-AC-GTATATGAATATTGTCGTTTT-------AAA-AGTAGATGATAACAGTACATATCCTGTATACGTTATCAAATGAGAATTAAGAAGTGATAGATCTATCATCACATGGGATGAAGCATCGATGACAAGTTCAGTTTTTACAAGTTTCCTATATTTAATTGTATAACTGGGGACATCGAAAGCAATTA----TTTTtatcagaaattaaatgtttaatacaacgtttttattgtattttgaataaaccaattgaataacaatgcaatagttataatatattcgaatatatatttccgatgttacggttttcgacgttgttgaaaaatggacggtacggttttcgccattgattgatacggttttcgatgctcatccagaatttgtatatacattctgttattgaataaaatgtatttgcgtaatatctaagaatttttaatgatctatttaaaaatgttttcacatatataatacattttgaaatacttaaactgctatcccgctttcttacatgttgcctgtctcaaaatgcataatgatataaataatgcatggaatataatttgcatctcattttcgtagtcagtgttgtattttctcatatcagttgatttatacttctattcatgtataaacatttgtaaaaagtaaacgtcataatcttgtgcgtgttacacaggagtgtgtcagcctccgatattaataatttaatatctacacttgtgcacaaacatactaattcgagctcataaagcagagaaggtatttattattatttaaattattgcaatttattctatttttataaaattaatgtcgaatgcttgttaatgaaatttaaatactcttttgaagctagttaatctttgattggattgtgtacgtatatgaatattgtcgttttaaaagtagatgataacagtacatatcctgtatacgttatcaaatgagaattaagaagtgatagatctatcatcacatgggatgaagcatcgatgacaagttcagtttttacaagtttcctatatttaattgtataactggggacatcgaaagcaattatttt
gi|20 : gtttagtatacataaatataatgtatatgcattatataggtactgttttatgttgtctgtccgttgttattgtacttttaacaccgaacactagtagaTTTTTGAGTACACTTCAT-TTTAACCTTGCTATGCCGCTGTATATGAATATTGTCGTTTT-ACTACAAAA-AGTAGACGATTTCAGTACATATCCTGTGTATGTCATCGAATGAGAACTAAAAAGTGATAGATCTATCATCACGTCTGATGAAGCCTCGATGACAA----------------TTTCACATATTTAACTGAATAACTGGGGACATCGTAAGCAATTA------TTTTAGATC
gi|21 : TT-AATGAATAAAA-TGTTTTTTGCGTAAC-ATCT---------TT-G--G-ATC--TTTA-AAGGCGTTTTCACATTATA-TTAAACA-TATTGTA----TTAAACTTCCATATC---AACCTACCATGCAGATA---TATT--------AGTGCAT--TGTAACTTGTttttt
gi|22 : AT--TA-A--TTG-----TTA--AAAA-TAAAA-AAATA-AACGT-T-TAATACAATGTAT-TGTATTGTTTTTCTC-ATAG-A-ACATTTG-AATAA---CAATTCAATAGT---------T---------TCAATATATT-GG---ATTG----GT----ATAT---TTT--A-CATGATATAATATCGGATGTTATTGGAAAATGGACAGAATGG-TTTTCGTCACATGATTTATGCGGTATTCGATACTCATgtgtttgttattcaatcataatcataataatagtatcgaagcatgtccgtgcgtctgtccgtccgatattgtccgtgta
gi|23 : gATGTAATA-----------T---------TC---------GA---AT------AT----ATAT---TTC--C-TATGATACGGTATTCGACGTTATTTGAAAATGGACGGCACGG-GTTTCGTCAT-TGACTGATACGGTATCCGATACTCATC------------TTTACAATTTGTT-GATGAGTAAAA-TGTATTT-GCTTAAT-cattata
gi|24 : catagaattgtgatatttTTATGATTTCGACC--G--AGACGGT--------TCTCGCT-CTC-----------------AGGTTTTCGACAGAG--TAAT---AC---------GGTAT-TCGTAAGAGAGGTAT-------------T---GTC------TTCGGCAGAC-ACTTTTCATAAAAGTAAGAGACTTTGAGGGTA--------TTATTTTC-CATGAAA-TAAAT-AT-------GAAAATACACGA--TAT-TAGTCGCAA---gattattgaatactcaactgtagcatctcctaatattaa
gi|26 : tatataccagaactgcgat-CATG----TAAAT-AC-------GAATATACACAA--TAA-TAGTCACAA---AA-GTT---------TA-A----A--TTACATCAA---TAAA--------------ATGCATATGAATTATGT----A---------------GG--TTC---TGA-T-T-A---ATG---G---T-------GTGTG--TCTGG----TGTTATTG-T--A----TA------TTTA-ACAATGAAC
gi|3 : acagttttcgctactataTTATGTTCTCGACC--G--AGACGGTAC--------TCGCT-TTC-----------------AGGGTTTCGACCAAG--TGATGATAC---------GATAT-TTGAGTAAGATGTAC-------------TACTGTC------TCCGACAGAC-ACATTTTATCAGAATTATTGACTTTGAAGGTA--------CTATTTTT-CACGATA-AAAAT-AT-------GAATATACACGA--TAT-TTGTCACAA---ATTGTT---------TA-A-------ATACATAAA---TAGA--------------AT-------------------GTATATGAATGATGTGAG--TAC---TGT-G-T-T-T-GTGGGGT---T--------TGTA--T--GT----TGTAATTG-T--A----TA------ACTA-ACTACAAACA------TAAGT---GAAACTGCAAAAACTT-T----------------TGT-AAT--TT-A--TT------TTA--AAAAATCGGA-AATCG-AATGT-T-TAAAACAATGTAT-TGTTTTGTATTTCGC-ATAA-A-ACATTTG-AATTA---AAATGCAATAGTTTCAATATAT---------TC---------GA---AT------TC----ATAT---TTC--A-AATGATACGGTATAAGGCGTTATTGGAAAA-GGACGGAACGG-TTTTCGTCAT-TGATTGATATTACATTCGGTACTCA-TCATGGAATTGTACTTACATTTTGCT-GATGAGCAAAACTAAATTT-GCTTAATGATCA-T-GAATCTTT-AATG-GTCGATTT--AAGACGTTCCCACA-TATA-CAGTACA-TTTTGTAATCCTTAGACTGCCATATC---TACTTGTCATACACATA--C-ATCTT-CAAACATTGCAT--TGTAACCTATGATCTTCGACCACATAAATATAGTAT---CTGTTACTGGCATTGTTTTATAAATTCTTTGTC-GTTTTCCATTTGTTCATACCtag
gi|30 : tggatataccaatatgcgatATACC-AATATTGCGATTT-----------------ATGTTATCGACCG------AT---AC---------GGTAG-TCGgt
gi|4 : agtgtagTATGTTTTCGACC--G--AGACGGTATAC--------GCT-CTC-----------------AGGTTTTCGACCGAG--TAAT---AC---------GGTAT-TCTTTCGAGATGTAT-------------T---GTC------TTCGACAGAC-GAATTTTATTAGGGTAAGTGTTTTTTAAGGTA--------TAATTTT--CATGAAA-TAAAT-AT-------GAAAATACACGA--TAT-TAGTCGCAA---AA-TTT---------TA-A----T--ATACGTAAA---TATA--------------AT------------------------------------G--TACAAATAT-G-CAT-T-ATA---T---A-------G---G--T--AC----TATTATT------------------TTTACAC--CGAACA------CTAGT---AGAATGGCAAAAACTTGCGTTTTCAT----GAAATGTTA-T--TA-A--TT------TTA--AAAAATCAGA-AATTA-AATGT-T-TAATACAATGT-T-ATTATTGTATTTTGC-ATAA-A-ACAATTG-AATGA---CAAGTCAATATT---------T---------TCTATATATTCGA---AT------AT----GTTT---TTT--C-CATGATACGTTTTTCGACGTT---GAAAAATGGACGGTACGG-TTTTCGTTAT-TGATTGATACGATTTTCAATACTCATCCA-GGATTTGCATATACATTCTTTT-TATGAATAAAA-TGTTTTT-GCGTTAT-ATTTAA-GAATCTTT-AATG-TTC-GATTACAACATGTTTCCACA-TATA-TAATACA-TTTTGAAATACTTAAACTGCTAT-CC---TGCTT-TCATGCATGTAGCCTG-CCT-CAG--AATGCAT--AG--ATTTATAAT----A---ATATAAATAGTGCATGCAATGTAATTTGCA---TCTTAT--TTTCGTAGTCAGTGTTGCATTTTCTTATATCActct
gi|5 : atggatatacaaaaattgcgatgTTATGTT--CGACC--G--AGACGGTAC-TC-GCTCTCACG-------------------------TTTCGACTGAG--TAAT---AC---------GATCT-TCGACAGAGAGTTAC-------------T---GTC------TTCGACAGAT-GCATTTAATAAGGGTTACTGGCTTCAAAAGTA--------TTATTTTT-CATCAAA-TAAAT-AT-------GAATATACACTA--TAT-TAGTAACAA---AA-ATT---------TA-A----T--TTACATAAA---TATAGTGTATATGCATATGT-------------------A---------------TG--TAC---CAT-T-T-T-T-ATG---T---T-------GTGTGTCT--GT----TGTTATTG-T--A----TA------TTTA-ACGACGAACACATAGTCTAGT---GGAATTGTAAAAACTT-C-----------GAAAAC-TAAA----------TG-----TTA--AA------------TACAATG------------TGT---TTGAATGAATTTCGC-ATAA-A-ACATTCG-AAAAA---CATTGCAATAGT---------TTCAATACAGTC---------AA---AT------GT----AAGT---TTT--C-TGTGATACGGTTTTCGACATAAGTAGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTTTTCGATTCTCATTCA-GGAATTGTATTTATATTTTGTA-AGTGAATAAAA-TGTTTTT-GCGTAAT-ATC-------------AATGAATC--TTTA-AATACGTTTTTACATTATA-TAATACA-TCTTGTATTACTTAAACTGCCATACC---GACTTACCATGCAGATA---TGTCTT-CAAACAAT-CATTGTG--ACTTATA
gi|6 : tgatatacaaacattacgat---AC---------GTTAT-TCAAGCGAGATA-AC-------------T---GTC------TTCGACAGAC-GCATTTTATCAGGGCTACTGACATTAAAGGTA--------TTATTTTT-CATGAAA-TGACT-ATCGCAAAAGAATGTATATGAATTATGTAGTTACT-------GTT---------TT-A----TGNNNNNNNNNN---NNNN--------------NN-------------------N---------------NN--NNN---NNN-N-N-N-N-NNN---N---N-------NNNNN--N--NN----TGTTATTG-T--A----TA------TTTA-ACGACGAACA------ATAGT---G------CAAAAACTT-CGTTTTCATCAAGAAAATGTTT-T--TT-A--TTG-----TAA--ATAAA--AGA-AGTTG-AATGT-T-TAATACAATGTAT-TTTAATGTATTTCAC-ATAA-A-ACGTTTG-AAAAAA--CAATGCAGTGGT---------T---------TCAATATAATCGA---AT------GT----AAAT---TTTTTC-TGTGATACGGTTTTCGATGTTATTGTAAAATGGCCGGTACGG-CTTTCGTTAT-TGATTGATACGGTATTTGATATTCATTTA-GAAATTGTATTTTCATTTTGTT-AGTAAATAAAA-TGATTTT-GCGTTAT-ATCT-A--------T-GA---ATC-A-TTA-AAGACGTTTTCACATTATATTAAT-TATTTTTGTATTACTTAAACTGCCATATC---TACTTACCATGCAGATA--C-ATATT-CAAACAGTGCATTGTG--ACTTGTtgttcttcacaatcataataaattcttatatttccgtgcgcgagtccatccgatcatgtccgttcgagaactttctcacacgt
gi|7 : ATATTGCGATTT-----------------ATGTTTTCGACCGAGA-TGGA---AC---------GG------AAC--AGA-----------------------------------ACAGA----ATTTTATCAGGGTTAATGACTTTAAAGGTA--------TTATTTTTTCATAAAA-TAATT-AC-------GAATATACA--A--TAT-TAGTCATAA---AA-GTT---------TA-AATTAC--ATACACAAC---TGTAT-------------AT-------------------G---------------GA--TAA---TGTAT-G-T-T-ATG---T---TTTATG--GTGTT--T--GTCTTTTGTTATTG-T--A----TA------TTTA-ACGACGAATA------TAAGT---GGAATTGCAACATCTT-CGTTTTCATTAAGAAAATCTTA-T--TT-A--TTG-----TCA--AAAAATCACA-AATTT-AATAT-T-AAATACAATGTTT-TTTATTGTATTTCGC-GTAA-A-ACATTTG-AATAA---CAATGCAATAGT---------T---------TCAATATATTCGA---AT------GT----AAAT---T-------GTGACACGATTTCCGACGTTATTGAAAAGTGGCCGGTACTG-TTTTTGTCAT-TGATTGATACGGTAATCGATACTCATTCC-GGAATTGTATTTAC---------------TAAAA-TGTTTTC-GAGAAAT-ATCT-A------------TG-A-------A-ATGACATTTTCACATTATA-TAATACA-TGCTGTATAACTTAAGCTGCCATATC---TATTTACCATACAGATA---TATCTT-CAAACAGGGCAT--gtgttcctcaatcacaatcatatagtatcggagaagcccgtgcgtcagtccatccgatcttctctgttctatgactttctcacacata
gi|8 : TTATGTTTTCGACCTAG--A--CGGTAC-CT-GCTA----GATC------------------AGGTTTTTGACCGAG--TAAT---AC---------AGTAT-TCGACCGAGAGATAC-------------T---GTC------TTCGACAGAC-GCATTTGAT-------ATT-ACTTTAAACATT--------TTATTTTT-CATGAAA-TAAAA-AT-------TAATATACACAA--TAT-AAGTCAAAA---AA-GTT---------TA-A----A--ATACATCAA---TAGA--------------ATGTATATGAATTATGT----A---------------GG--TAC---TGT-T-T-T-T-ATG---G---T-------GTATG--TTTGT----TGTTATTG-T--A----TACCAGTTTTTA-ACGAAGAACA------ATTGT---GGAATTGCAAAATCTT-CGTTTTCAT---AAAAATAAGA-T--TT-A--TTG-----TTACAAAAAGTCTGA-CATTA-ACTGT-T-CAATAAAATGTAT-TTTAATGTATTT-----TAATA-GCATT---GCTAA---TGTTTCAATATA---------T---------TC---------AA---AG------GG----AAAT---TTC--C-TGTGATACGGTTTTCGTCGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGATATTCGATATTCATTCA-CAAATTGTATTTTTATTTTTTTCAATGAATAACC-TA-TTTT-GCGTAAC-ATAT-ATGAGTCTTTAAAGG-ATC-ATATA-----------TACATTATA-AAATAtgtgccttgtgttcttcaatcacaagcatatagtaccggag
gi|9 : atgaatattgtgatGATATACC-AATATTGCAATTT-----------------ATGTTTTTGACCGAGACTG-T---ACTCGCTTTCAGGTTT-TTGACAGAGAGATAC-------------T---GTC------TTTGACAGAC-GCATTTTATCAGGGTTACCGACTT--AAGGTATTATTTTTTTATTTTT-CATACAA-TACAC-AC-------GAATATACACAA--TAT-TAGTCATAA---AA-GTTACATAAATATA-A----T--GTATATCGA---TGAATTAT----------GT-------------------A---------------GG--TTT---TGT-T-T-T-T-ATG---G---T-------GTGTGTCT--GT----TGTTATT-------------------------GACAAACT------CTAGT---GGAATTGCAAAAA-----------------AAAATCAGAAC--TTGA--GTG-----TT-----AAAT-------TT---ATGTAT-TGATA-----TAT-TTTAATGTCTTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGTTTAATTATAT---------TA---------GA---AT------GT----ATAT---TTC--C-TACGATATGGTTTTCAAAGTTATTGGAAAATGGCCGGTATGG-TTTCCG---T-TG-TTGATACGGTATACGATACTCATTCA-GGAA------------TTTGTT-AATGAACAAAA-TATTTTT-GAGTAAT-ACCT-ATGAATC--------------TTTA-AAGATGTATTCAGATTTTA-TAATACA-TTTTGTATTACTT-AACTGCCATTTC---TACATATCATGCAGACA---TATCTT-CAA--Agtgatttt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TAGACTGACTGGTGCTATAACAACCAATCATCAAACAGTGTAGACTGACTGGTGCTATAACCTAGTATGTTCTTCAAGCACAATCATACTGTATCTGTTATTGGCCTAGTTTAACAAATTCTGCGTCGTATTTCATTTGGCTCTCCCGTCA
Unaligned ( gi|27 ): TTGTTTCATGCTCTTGCGGGGGTCTTATCTTGTGTTTACGTTCTCGTAATCTACACTTCTCATCGCCTCTATTTGTGACTATGTAATAGGTGGTAAGGTCA
Unaligned ( gi|28 ): TGTGTCTTGTATGGCTTATTATGTTTGGTCCCAACAAAAGATGCATTTCCGGTTGAATTCTTGATTTATTAGCAAATATCATT
Unaligned ( gi|29 ): TCAATGATTTTTAATTTTAACAGAGTCATGGGCTTTCTTAAGAAATGATAAGTATT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 3 77777777777777 111111111 1111111111111 111111111 1111111 111111111111111111111111111111111111111111111111111111111 2222222222222222222222222 222 5555555555555555555555555555555 111111 555555555555555555555555 222 222222 22222222 222222 111 11 77777777777777777777777 333333 1 11 1 1 11 4444444 1 33 33333
lowQualScore : 2 555 44444444444444 5 4444 66 0 444 000000000 2 1 4444444444444 444 777777 2 0 1 1 2 1 99999999 2 2 2 8888888 33 2 666 000000000 2 8888888 66666 1 888888888888888888888888888888888888888888888888888888888 33 444 555 2 666 4444444444444444444444444 5555 2 33 5555 666666 4 2 777777 444 2 888 0 111 33 2 33 999999 33 0 2 2 2 2 0 3 2 0 2 2 2 2 666 1 6666666666666666666666666666666 666 000000 5555 5 444 33 2 2 2 2 2 2 1 2 2 888888888888888888888888 33 3 3 4 4 666 1 555 2 999 555555 0 44444444 333333 77 777 33 3 1 1 66666666666666666666666 22 1 1 000000 1 1 5 88 1 3 6 3 44 9999999 3 0 0 0 0 44 3 55555
lowQualScore : . ... .............. . .... .. . ... ......... . . ............. ... ...... . . . . . . ........ . . . ....... .. . ... ......... . ....... ..... . ......................................................... .. ... ... . ... ......................... .... . .. .... ...... . . ...... ... . ... . ... .. . .. ...... .. . . . . . . . . . . . . . ... . ............................... ... ...... .... . ... .. . . . . . . . . . ........................ .. . . . . ... . ... . ... ...... . ........ ...... .. ... .. . . . ....................... .. . . ...... . . . .. . . . . .. ....... . . . . . .. . .....
lowQualScore : 7 888 99999999999999 6 7777 33 7 444 000000000 5 7 7777777777777 777 777777 7 1 5 1 1 1 77777777 5 5 5 1111111 44 4 999 000000000 5 1111111 22222 0 444444444444444444444444444444444444444444444444444444444 44 444 888 5 000 6666666666666666666666666 0000 4 22 0000 888888 7 1 222222 444 7 222 8 000 77 5 44 111111 44 4 5 5 5 5 9 4 5 6 5 5 5 5 999 6 0000000000000000000000000000000 555 000000 0000 3 444 44 4 7 7 9 9 9 7 9 9 555555555555555555555555 55 1 3 5 5 444 4 000 1 333 222222 8 22222222 000000 00 555 88 2 0 0 55555555555555555555555 00 0 0 000000 0 0 5 55 0 3 7 3 00 0000000 3 7 7 7 7 00 7 77777
consensus : GTTATGTTTTCGACCGAGACG---GTAC-C--G-T-TCGCNATTCAG---GTTTTCGACCGAG--TAAT---AC---------GG-TATTCGACCGAGAGGTAC-------------T---GTC------TTCGACAGACGCA-TTTTATCAGGGTTACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAAAA---GTT---------TA-A----T--ATACATAAA-----TANA--------------A------T-------------------A---------------GG--TAC---TGT-T-T-T-T-ATG---T---T-------GTGTG--T--GT----TGTTATTG-T--A----TA------TTTA-ACGACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAAGAAAATGTGAAT--TT-A--TTGT-----TA--AAAAATCAGA-AATTA-AATGT-T-TAATACAATGTAT-TTTAATGTATTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGT---------T---------TC---------GA---AT------GT----ATAT---TTC--C-TGTGATACGGTTTTCGACGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCGATACTCATTCA-GGAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GCGTAAT-ATCT-A-GAA-TCTTT-AATG-ATC-ATTTA-AAGACGTTTTCACATTATA-TAATACA-TTTTGTANTACTTAAACTGCCATATC---TACTTACCATGCAGATA--CTGTCTTCAAAC--AGTGCAT--TG--ACTTATAAT----G---ATAT------AAATAGTGCATGNAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTTTCTCATATCAGTTNATTTATACTTCTATTCATNTGTAAACATTTGTAAAAAGTAAACGTCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACANNGGAGTGTGTCAGCNTCCGATATTAATAATTTAATATCTACACTTGTNCACAAACATACTAATTCGGGCTCATAAAGCAGANAGGGTATTTATTATTATCTAAATTATTGCAATTTATTCTATTTNTATAAAATCAATGTCGAAAATGCTTGTTAATGAAATTNAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGT-ACTGTATATGAATATTGTCGTTTT-A-TA-GAAA-AGTAGACGATTTCAGTACATATCCTGTATACGTTATCGAACGAGAACTAAGAAGTGATAGATCTATCATCACGCGTGATGAAGCCTCGATGACAA-TTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGGGACATCGAAAGCAATTA----TTTTTTAGATC
Reference ( family-584 ) : GTTATGTTTTCGACCGAG-CG---GTACACC-G-TATCGCGATTTAG---GTTTTCGACCGAG--TAAT---AC---------GG-TATTCGACCGAGAGGTAC-------------T---GTC------TTCGACAGACGCA-TTTTATCAGGGTTACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAAAA---GTT---------TA-A----T--ATACATAAA-----TANA--------------A------T-------------------A---------------GG--TAC---TGT-T-T-T-T-ATG---T---T-------GTGTG--T--GT----TGTTATTG-T--A----TA------TTTA-ACGACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAAGAAAATGTGAAT--TT-A--TTGT-----TA--AAAAATCAGA-AATTA-AATGT-T-TAATACAATGTAT-TTTAATGTATTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGT---------T---------TC---------GA---AT------GT----ATAT---TTC--C-TGTGATACGGTTTTCGACGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCGATACTCATTCA-GGAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GCGTAAT-ATCT-A-GAA-TCTTT-AATG-ATC-ATTTA-AAGACGTTTTCACATTATA-TAATACA-TTTTGTANTACTTAAACTGCCATATC---TACTTACCATGCAGATA--CTATCTTCAAAC--AGTGCAT--TG--ACTTATAAT----G---ATAT------AAATAGTGCATGNAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTTTCTCATATCAGTTNATTTATACTTCTATTCATNTGTAAACATTTGTAAAAAGTAAACGTCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACANNGGAGTGTGTCAGCNTCCGATATTAATAATTTAATATCTACACTTGTNCACAAACATACTAATTCGGGCTCATAAAGCAGANAGGGTATTTATTATTATCTAAATTATTGCAATTTATTCTATTTNTATAAAATCAATGTCGAAAATGCTTGTTAATGAAATTNAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGT-ACTGTATATGAATATTGTCGTTTT-A-TA-GAAA-AGTAGACGATTTCAGTACATATCCTGTATACGTTATCGAACGAGAACTAAGAAGTGATAGATCTATCATCACGCGTGATGAAGCCTCGATGACAA-TTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGGGACATCGAAAGCAATTA----TTTTTTAGATC
gi|1 : CCGAA-CGCTGATATACCCG-AACTGTGATTTAT---GTTTTCGACCGAG--TAAT---AC---------GG-TATTCGTCCGAGAGATAC-------------T---GTC------TTCGACAGACGGAATTTTA-AAGGGTAAGTAACTTTGAAGGTA--------TTATTTTT-CATGAAA-TAAAT-GT-------GAAAATACACGA--TAT-ACGTCGCAAAA---ATT---------TG-A----T--AAACATAAA-----TATA--------------A------T-------------------A---------------GG--TAC---AGA-T-T-T-T-ATG---T---T-------GTCTG--C--GT----TGTTATTG-T--A----T-------TTTA-ACACCGAACA------CTAGT---AGAATTGCAAAAACTG-CGTTTTTATCAAGTAAATGTAAACAGTT-A--TTGCCTTTCTA--CAAAATCAGA-AATTA-AATGT-T-TGATAGAATGTTTGTTT--TGTATTTTGC-ATAA-A-ACAATTG-AATAA---CAATACA--------------T---------TC---------AA---AA------AT----ACAT---TTC--C-TATGATTCGATGTTGGACGTTGTTTAAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCAATACTCATCCA-GGATTTGTGTATACATTCTGTT-GATGAATAAAA-TGTATTC-GCGTAAT-ATTT-A-AAAATTCTT-AATG-ATCGATTTA-AAAATGTTTCCACAT-ATA-TAATACA-TTTTGAAATACTTATACTGCTAT-CC---CGCTTTCT-TGCATATAGCCTGTCT-CAGA----GTGCAT--AC--ATTTATAAT----G---ATAC------AAACAGTGTGTGAAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTGTCTCATATCAGTTTATTTATATTTCTATTCATTTGTAAACATTTGTAAAAAATAAACATCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACAGTGGAGTATATCAGCATCCGATATTAATAATTTAATATCTACACTTATTCACAAAC------ATTCGGGCTCATAAAGCAGACAGGGTATTTATTATTATCTAAATTATTGCAATTTATTTTATTTATATAAAATC-ATGTCGAAAATGCTTATTAATGAAATTAAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGT-ACT-TGTATGAATATTGTTGTTTTAA-TA-GGAATAGTAGATGATTTCAGTACATATCCTGTATATGTTACCGAACGAGAACTAAGAAGTGATAGATCTATCATCATGCGTGATAAAGCCTTAATGACAATTTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGTGACACCGAAAGCAATTACTAGTTTTTTAGATC
gi|10 : gtcactt---GTTTTCGACCAAG--TAAT---AC---------GG-TATTCGACCGAGCGATAC-------------T---GTT------ATCGACAGACGCT-TTTTATCAGGGTAACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACAG--CAG-TAGTCGCAAAA---GTT---------TA-A----A--TTAGATTAA-----TAGA--------------A------TGCATACGAATTATGT----A---------------GG--TTC---TGT-G-T-TATGATG---G---T-------GTGTG--TCTGT----TGTTATTG-T--A----TA------TTTA-ACGACAAACT------CAAGG---GGAACTGCAAAAACTT-CGTTGTCATAAAGAAAATGTGA-T--TT-A--TTGT-----AA--AAAAATCATA-ACTTA-AACGT-T-AAATACAATGTAT-TTTAATGTATTTCGC-ATAA-A-ACAATTG-AATAA---CAATGCAATAAT---------T---------TC---------GATATATTCGAAGGT----AAAT---TTT--C-TGTGATACCGTTT-CGACGTTATTGGAAATTGGCCTGTAAGG-TTTTCGTCAT-TGATCGATTGGGTATTCGAT---------------TGTATTTACATTTTGTT-AATGAATAAAA-TGTTTAT-GCGTAAT-ATCT--------------ATGCAT--ATTTA-AAGATGTTTTCACATCATA-TAATACA-TTTTGTA
gi|11 : ggtataccaaaattgcgttttttactgtacatgccctcatGTTACCTTTTCGACCGAG-AC---GTAC--------TCGCT-TTCAG---GTTTTCGACCGAG----AT----C---------GG-CATGCGACCGAGATGTAT-------------T---GTT------TTCGACAGGCGCA-TTTAATCAGGGTTACTGACTTTAAGGGTA--------TTATTTTT-CATGAAA-TA-----T-------AAGTATACACAA--TAC-TAGTAACAAAA---GTT---------TGGA----T--A-ACATAAA-----TAAA--------------A------TTTATACGAATTATACTGGCA---------------GGCCTAC---TGT-T-T-T-T-ATGGC-T---T-------GTGTC--T--GT----TGTTATTG-T--A----TA------TTTA-ACGGCGAACA------CTAGT---AGAATTGCAAAAGCTT-CGTTTTCAACAAG-AAATGTG-AT--GT-G--TTGT-----AA--AGAAATCAGA-AATTA-AATGT-C-AAATACAACGTAT-TTTGATGTATTTCGCAAAAA-A-ACATTTG-AATAA---CATTGCAATAGT---------T---------TC---------AAT--AT------ATTCGAATATAAATTC--T-TGTGATACGGTTTTCGACGTTACTGGAAAAGTACGGGTTCGGTTTTTTGTCAT-TGATTGCTACGGTATTCGATACTCTTTAA-GGAATTGT
gi|12 : gtggataggcctatattgtgaTTATGTTTCTGACCGAAACG---GTAC--------TCGCT-CTCAG---ATTTTCAACCGAG--TAAT---AC---------GGATAT-CGACCGATAGATAC-------------T---GTC------TTTGACAGGCGAA-TTTCATTTTGATTACTGACTTTAACAGTT--------TTATTGTT-CCTGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAAAATAAGTT---------CA-AATTGC--ATATATAAAATGTATATG--------------AATTATGT-------------------A---------------GG--TAC---TGT-T-T-T-A-ATG---T---TTTATGGCGTGTG--TCTGT----TGTTATTG-C--A----TA------TTCA-ACGGCGAACA------CTAGT---GAAATAGCAAAAACTT-CATTTTCATCAAGAAAATTTG-AT--TT-A--TTGA-----GA--AAAAGAGAGA-AATTA-AATGA-T-GAATACATAATAT-TTTAATGAATTTCGC-ATAA-A-ACATTTG-AATAT---CAATGCAACAGT---------T---------TC----------A---AT------AT----AT
gi|13 : gatataccaatattgctatAT--TT-A--TTGT-----TA--AGAAATCAGA-AATTA-AATAT-T-TAATACAATGCAT-TTTAATGTATTTCGC-ATCA-A-ACATTTG-AATAA---CAATGCAATAATATA------T---------TG---------TA---AT------GA----TTAT---TTC--C-TGTGATACGGTATTCGACGTTATAAGAAAATGGCCGGTACGA-TTTTCGTCAT-TGATTGATACGGCATTCGATACTTATTCA-AGAATTGTATTCACATTTCGTT-AATTAAAAAAA-TA-TTGT-GCATATT-GTAT-ATGAC-TCTTT-AATG-ATCGATTT--AAGACATTTTCACATTAAA-TAATACC-TGTTGTATTACTTAAACTGCCATATC---TACTTACCATGCAGATA---TATCTTCCAAC--AGTGCATTGTG--ACTTATtcga
gi|14 : g-TGTGATACAGTTTTCGACGTTGTTGGAAAATGACCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTTGATACTCATTCA-GAAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GTGTAAT-ATCT-ATGAA-TCTTT-AA--------------AGACGTTTTCACATTATA-TTATACA-TTTTGTAATACTTAAACTGCAATATC---TACTTATCATGCA--CA--GTGTCATGTAACTAAGT-CAC--TA--GCATGCA------G---ATATCTCTTCAAACAGTGCATttgttcttcaatcacaatcatatagtatcgga
gi|15 : TTATGTGTTTGACCGAGGCG---GTAC--------TCGCT-CTCAG---GTTTTTGACTGAG--TTAA---AC---------GG-TATTCGACCGAGGGGTACATTTTAAAAAGGGT---GTCACCTGTTTTGATGTATATG-TTTCGTTAAGG----TGATTT-----GTC--------ATATTTTT-TTTAAAAGTAAATAAT-------AGATAT---CGA--TAT-tgcgacttgtgtgttcttcaaacataattacgttgtatcggagtatg
gi|16 : tgattgtgcttttatggcttatataatgtcatgttccaacgaaagttgcatttccggccgggacctcgattaattaccaaatataattaccacagtgaataaaccaatattttcgatTTATGTTTTCGACCGTGACG---GTAC--------TCGCTCTTAAGCCGGTTATCGACCGAT--TAAT---AC---------GA-TATTCGACCGAAAGGTAT-------------T---GCC------TTCGACAGATGCA-TTTCATCAGGGTTACTGACTTTAA-----------------------ATAAAA-TGAAC-AT-------GAATATACACGA--TAG-TAGTCACAAGA---GTT---------TA-A----A--TTACATAAA-----TTGA--------------A------T------------------------------------G--TA------T-A-T-T-A-AT-------------------TA--T--GT----TTTTATTG-T--A----TA------TTTA-ACGACCAACA------CTAGT---ATAATTGCAAAAACTT-CGTTTTgatccagcgaatataagttc
gi|17 : atataccaatattgcgaTTATGTTTTCGACCGAGTCG---GTAC--------TCGC-ACTCAA---GTTTTCGACCGAG--TTGT---AC---------GC-TATTCGATCGAGATGTAC-------------T---GTC------TTTGCCGGACGCA-TTTTATCAGGGCTAACGACTTTG--------------------TT-CATGAGA-TAAAT-AT-------GAATATACACGA--TAT-TAGACACACAA---TTT---------TT-A----A--ACACATAGA-----TAGA--------------A------T------------------------------------G--TA----TAT-GAC-T-T-ATG---TAGGT-------ATGTA--T--GT----TCTTATTG-T--A----TA------TTTA-ACAACGAATA------TTAGTAAAGGAATTGC-AAAACTT-TGTTTTCAagttttagtatttattttaaag
gi|18 : tgcatataccagctttgtgct--T--GC----TGTTATTG-CTAA----TA------TGTACAC------TA------CTGGT---GGGCGTTCAAAAACTG-AGTTTTTGTCAATAAAATGT---T--GT-AAGTTGT------A--AACATTTAGATAAGTA-AATGT-TATAATA------AT-T--AATGCATTTCGC-ATAA-ACACTTTTG-AATAA---CGATGCAATAAT---------T---------TC----------A---AT------AT----A------TTC--G-T-TTATATAGTTTTaa
gi|19 : tgctatAT-TAATTACATAA---ATA---------TA-A----T--GTATACGAA-----TTAT--------------G------C-------------------C---------------GG--TGC---TGT-G-T-T-T-AT-------------------CG--T--GT----TGTTATTGAT--ACTCGTA------TTTA-ACAACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAGGAATATGTG-AT--TT-A--TTG------TA--AAAAATCAGA-AATTA-AATGA-A-TAATTCAATGTAT-TCCAATGTATTTCGT-ATAA-A-A----TGCAATAGTTTCAATATAA-----------------------TC---------GA---AT------GT----A-AT---TTT--CGTGTGATATCGTTTTCGGCGTTATTGGAaatgagactgtattcggagcaaagtcccggcatcaaaacgtatatacacaaatgcaatacttaattggaagactatttcacatcacattggt
gi|2 : gc---GTT---------TA-G----T--ATACATAAA-----TATA--------------A------TGTATATGCATTATAT----A---------------GG--TAC---TGT-T-T-T---ATG---T---T-------GTCTG--TCCGT----TGTTATTG-T--A----CT------TTTA-ACACCGAACA------CTAGT---AGAATTG-AAAA
gi|2 : -A--TTG-------A--AAATATCAGA-AATTA-AATGT-T-TAATACAACGT-T-TTTATTGTATTTTGA-ATAA-A-CCAATTG-AATAA---CAATGCAATAGT---------TATAATATATTC---------GA---AT------AT----ATAT---TTC--C-GATGTTACGGTTTTCGACGTTGTTGAAAAATGGACGGTACGG-TTTTCGCCAT-TGATTGATACGGTTTTCGATGCTCATCCA-GAATTTGTATATACATTCTGTT-ATTGAATAAAA-TGTATTT-GCGTAAT-ATCT-AAGAA-TTTTT-AATG-ATCTATTTA-AAAATGTTTTCACAT-ATA-TAATACA-TTTTGAAATACTTAAACTGCTATCCCGCTTTCTTAC-ATGTTGC----CTGTCT-CAAA----ATGCAT------------AAT----G---ATAT------AAATAATGCATGGAATATAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGTATTTTCTCATATCAGTTGATTTATACTTCTATTCATGTATAAACATTTGTAAAAAGTAAACGTCATAATCTTGTGC-----------------------GTGTTACACAGGAGTGTGTCAGCCTCCGATATTAATAATTTAATATCTACACTTGTGCACAAACATACTAATTCGAGCTCATAAAGCAGAGAAGGTATTTATTATTATTTAAATTATTGCAATTTATTCTATTTTTATAAAATTAATGTCG--AATGCTTGTTAATGAAATTTAAATACTCTTTTGAAG-CTAGTTAATCTTTGATTGGATTGTGT-AC-GTATATGAATATTGTCGTTTT-------AAA-AGTAGATGATAACAGTACATATCCTGTATACGTTATCAAATGAGAATTAAGAAGTGATAGATCTATCATCACATGGGATGAAGCATCGATGACAAGTTCAGTTTTTACAAGTTTCCTATATTTAATTGTATAACTGGGGACATCGAAAGCAATTA----TTTTtatcagaaattaaatgtttaatacaacgtttttattgtattttgaataaaccaattgaataacaatgcaatagttataatatattcgaatatatatttccgatgttacggttttcgacgttgttgaaaaatggacggtacggttttcgccattgattgatacggttttcgatgctcatccagaatttgtatatacattctgttattgaataaaatgtatttgcgtaatatctaagaatttttaatgatctatttaaaaatgttttcacatatataatacattttgaaatacttaaactgctatcccgctttcttacatgttgcctgtctcaaaatgcataatgatataaataatgcatggaatataatttgcatctcattttcgtagtcagtgttgtattttctcatatcagttgatttatacttctattcatgtataaacatttgtaaaaagtaaacgtcataatcttgtgcgtgttacacaggagtgtgtcagcctccgatattaataatttaatatctacacttgtgcacaaacatactaattcgagctcataaagcagagaaggtatttattattatttaaattattgcaatttattctatttttataaaattaatgtcgaatgcttgttaatgaaatttaaatactcttttgaagctagttaatctttgattggattgtgtacgtatatgaatattgtcgttttaaaagtagatgataacagtacatatcctgtatacgttatcaaatgagaattaagaagtgatagatctatcatcacatgggatgaagcatcgatgacaagttcagtttttacaagtttcctatatttaattgtataactggggacatcgaaagcaattatttt
gi|20 : gtttagtatacataaatataatgtatatgcattatataggtactgttttatgttgtctgtccgttgttattgtacttttaacaccgaacactagtagaTTTTTGAGTACACTTCAT-TTTAACCTTGCTATGCCGCTGTATATGAATATTGTCGTTTT-ACTACAAAA-AGTAGACGATTTCAGTACATATCCTGTGTATGTCATCGAATGAGAACTAAAAAGTGATAGATCTATCATCACGTCTGATGAAGCCTCGATGACAA----------------TTTCACATATTTAACTGAATAACTGGGGACATCGTAAGCAATTA------TTTTAGATC
gi|21 : TT-AATGAATAAAA-TGTTTTTTGCGTAAC-ATCT----------TT-G--G-ATC--TTTA-AAGGCGTTTTCACATTATA-TTAAACA-TATTGTA----TTAAACTTCCATATC---AACCTACCATGCAGATA---TAT-------T--AGTGCAT--TGTAACTTGTttttt
gi|22 : AT--TA-A--TTGT-----TA--AAAA-TAAAA-AAATA-AACGT-T-TAATACAATGTAT-TGTATTGTTTTTCTC-ATAG-A-ACATTTG-AATAA---CAATTCAATAGT---------T---------TCAATATATT-GG---ATTG----GT----ATAT---TTT--A-CATGATATAATATCGGATGTTATTGGAAAATGGACAGAATGG-TTTTCGTCACATGATTTATGCGGTATTCGATACTCATgtgtttgttattcaatcataatcataataatagtatcgaagcatgtccgtgcgtctgtccgtccgatattgtccgtgta
gi|23 : gATGTAATA-----------T---------TC---------GA---AT------AT----ATAT---TTC--C-TATGATACGGTATTCGACGTTATTTGAAAATGGACGGCACGG-GTTTCGTCAT-TGACTGATACGGTATCCGATACTCATC------------TTTACAATTTGTT-GATGAGTAAAA-TGTATTT-GCTTAAT-cattata
gi|24 : catagaattgtgatatttTTATGATTTCGACCGAGACG---GT--------TCTCGCT-CTCAG---GTTTTCGACAGAG--TAAT---AC---------GG-TATTCGTAAGAGAGGTAT-------------T---GTC------TTCGGCAGACACT-TTTCATAAAAGTAAGAGACTTTGAGGGTA--------TTATTTTC-CATGAAA-TAAAT-AT-------GAAAATACACGA--TAT-TAGTCGCAAgattattgaatactcaactgtagcatctcctaatattaa
gi|26 : tatataccagaactgcgat-CATG----TAAAT-AC-------GAATATACACAA--TAA-TAGTCACAAAA---GTT---------TA-A----A--TTACATCAA-----TAAA--------------A------TGCATATGAATTATGT----A---------------GG--TTC---TGA-T-T-A---ATG---G---T-------GTGTG--TCTGG----TGTTATTG-T--A----TA------TTTA-ACAATGAAC
gi|3 : acagttttcgctactataTTATGTTCTCGACCGAGACG---GTAC--------TCGCT-TTCAG---GGTTTCGACCAAG--TGATGATAC---------GA-TATTTGAGTAAGATGTAC-------------TACTGTC------TCCGACAGACACA-TTTTATCAGAATTATTGACTTTGAAGGTA--------CTATTTTT-CACGATA-AAAAT-AT-------GAATATACACGA--TAT-TTGTCACAAATT--GTT---------TA-A-------ATACATAAA-----TAGA--------------A------T-------------------GTATATGAATGATGTGAG--TAC---TGT-G-T-T-T-GTGGGGT---T--------TGTA--T--GT----TGTAATTG-T--A----TA------ACTA-ACTACAAACA------TAAGT---GAAACTGCAAAAACTT-T----------------TGT-AAT--TT-A--TT-T-----TA--AAAAATCGGA-AATCG-AATGT-T-TAAAACAATGTAT-TGTTTTGTATTTCGC-ATAA-A-ACATTTG-AATTA---AAATGCAATAGTTTCAATATAT---------TC---------GA---AT------TC----ATAT---TTC--A-AATGATACGGTATAAGGCGTTATTGGAAAA-GGACGGAACGG-TTTTCGTCAT-TGATTGATATTACATTCGGTACTCA-TCATGGAATTGTACTTACATTTTGCT-GATGAGCAAAACTAAATTT-GCTTAATGATCA-T-GAA-TCTTT-AATG-GTCGATTT--AAGACGTTCCCACA-TATA-CAGTACA-TTTTGTAATCCTTAGACTGCCATATC---TACTTGTCATACACATA--C-ATCTTCAAAC--ATTGCAT--TGTAACCTATGATCTTCGACCACAT------AAATATAGTAT---CTGTTACTGGCATTGTTTTATAAATTCTTTGTC-GTTTTCCATTTGTTCATACCtag
gi|30 : tggatataccaatatgcgatATACC-AATATTGCGATTTAT---GTTATCGACCG------AT---AC---------GG-TAGTCGgt
gi|4 : agtgtagTATGTTTTCGACCGAGACG---GTATAC--G-C-TC-----TCAG---GTTTTCGACCGAG--TAAT---AC---------GG-TATTCTTTCGAGATGTAT-------------T---GTC------TTCGACAGACGAA-TTTTATTAGGGTAAGTGTTTTTTAAGGTA--------TAATTTT--CATGAAA-TAAAT-AT-------GAAAATACACGA--TAT-TAGTCGCAAAA---TTT---------TA-A----T--ATACGTAAA-----TATA--------------A------T------------------------------------G--TACAAATAT-G-CAT-T-ATA---T---A-------G---G--T--AC----TATTATT------------------TTTACAC--CGAACA------CTAGT---AGAATGGCAAAAACTTGCGTTTTCAT----GAAATGTTA-T--TA-A--TT-T-----TA--AAAAATCAGA-AATTA-AATGT-T-TAATACAATGT-T-ATTATTGTATTTTGC-ATAA-A-ACAATTG-AATGA---CAAGTCAATATT---------T---------TCTATATATTCGA---AT------AT----GTTT---TTT--C-CATGATACGTTTTTCGACGTT---GAAAAATGGACGGTACGG-TTTTCGTTAT-TGATTGATACGATTTTCAATACTCATCCA-GGATTTGCATATACATTCTTTT-TATGAATAAAA-TGTTTTT-GCGTTAT-ATTTAA-GAA-TCTTT-AATG-TTC-GATTACAACATGTTTCCACA-TATA-TAATACA-TTTTGAAATACTTAAACTGCTAT-CC---TGCTT-TCATGCATGTAGCCTG-CCTCAG----AATGCAT--AG--ATTTATAAT----A---ATAT------AAATAGTGCATGCAATGTAATTTGCA---TCTTAT--TTTCGTAGTCAGTGTTGCATTTTCTTATATCActct
gi|5 : atggatatacaaaaattgcgatgTTATGTT--CGACCGAGACG---GTAC-TC-GCTCTCACG-----------TTTCGACTGAG--TAAT---AC---------GA-TCTTCGACAGAGAGTTAC-------------T---GTC------TTCGACAGATGCA-TTTAATAAGGGTTACTGGCTTCAAAAGTA--------TTATTTTT-CATCAAA-TAAAT-AT-------GAATATACACTA--TAT-TAGTAACAAAA---ATT---------TA-A----T--TTACATAAA-----TATAGTGTATATGCATATG------T-------------------A---------------TG--TAC---CAT-T-T-T-T-ATG---T---T-------GTGTGTCT--GT----TGTTATTG-T--A----TA------TTTA-ACGACGAACACATAGTCTAGT---GGAATTGTAAAAACTT-C-----------GAAAAC-TAAA----------TGT-----TA--AA------------TACAATG------------TGT---TTGAATGAATTTCGC-ATAA-A-ACATTCG-AAAAA---CATTGCAATAGT---------TTCAATACAGTC---------AA---AT------GT----AAGT---TTT--C-TGTGATACGGTTTTCGACATAAGTAGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTTTTCGATTCTCATTCA-GGAATTGTATTTATATTTTGTA-AGTGAATAAAA-TGTTTTT-GCGTAAT-ATC--------------AATGAATC--TTTA-AATACGTTTTTACATTATA-TAATACA-TCTTGTATTACTTAAACTGCCATACC---GACTTACCATGCAGATA---TGTCTTCAAAC--AAT-CATTGTG--ACTTATA
gi|6 : tgatatacaaacattacgat---AC---------GT-TATTCAAGCGAGATA-AC-------------T---GTC------TTCGACAGACGCA-TTTTATCAGGGCTACTGACATTAAAGGTA--------TTATTTTT-CATGAAA-TGACT-ATCGCAAAAGAATGTATATGAATTATGTAGTTACT------GTT---------TT-A----TGNNNNNNNNNN-----NNNN--------------N------N-------------------N---------------NN--NNN---NNN-N-N-N-N-NNN---N---N-------NNNNN--N--NN----TGTTATTG-T--A----TA------TTTA-ACGACGAACA------ATAGT---G------CAAAAACTT-CGTTTTCATCAAGAAAATGTTT-T--TT-A--TTGT-----AA--ATAAA--AGA-AGTTG-AATGT-T-TAATACAATGTAT-TTTAATGTATTTCAC-ATAA-A-ACGTTTG-AAAAAA--CAATGCAGTGGT---------T---------TCAATATAATCGA---AT------GT----AAAT---TTTTTC-TGTGATACGGTTTTCGATGTTATTGTAAAATGGCCGGTACGG-CTTTCGTTAT-TGATTGATACGGTATTTGATATTCATTTA-GAAATTGTATTTTCATTTTGTT-AGTAAATAAAA-TGATTTT-GCGTTAT-ATCT-A---------T-GA---ATC-A-TTA-AAGACGTTTTCACATTATATTAAT-TATTTTTGTATTACTTAAACTGCCATATC---TACTTACCATGCAGATA--C-ATATTCAAAC--AGTGCATTGTG--ACTTGTtgttcttcacaatcataataaattcttatatttccgtgcgcgagtccatccgatcatgtccgttcgagaactttctcacacgt
gi|7 : -TATTGCGATTTAT---GTTTTCGACCGAGA-TGGA---AC---------GG------AAC--AGA-----------------------------------ACAGA---A-TTTTATCAGGGTTAATGACTTTAAAGGTA--------TTATTTTTTCATAAAA-TAATT-AC-------GAATATACA--A--TAT-TAGTCATAAAA---GTT---------TA-AATTAC--ATACACAAC-----TGTAT-------------A------T-------------------G---------------GA--TAA---TGTAT-G-T-T-ATG---T---TTTATG--GTGTT--T--GTCTTTTGTTATTG-T--A----TA------TTTA-ACGACGAATA------TAAGT---GGAATTGCAACATCTT-CGTTTTCATTAAGAAAATCTTA-T--TT-A--TTGT-----CA--AAAAATCACA-AATTT-AATAT-T-AAATACAATGTTT-TTTATTGTATTTCGC-GTAA-A-ACATTTG-AATAA---CAATGCAATAGT---------T---------TCAATATATTCGA---AT------GT----AAAT---T-------GTGACACGATTTCCGACGTTATTGAAAAGTGGCCGGTACTG-TTTTTGTCAT-TGATTGATACGGTAATCGATACTCATTCC-GGAATTGTATTTAC---------------TAAAA-TGTTTTC-GAGAAAT-ATCT-A-------------TG-A-------A-ATGACATTTTCACATTATA-TAATACA-TGCTGTATAACTTAAGCTGCCATATC---TATTTACCATACAGATA---TATCTTCAAAC--AGGGCAT--TG--gtgttcctcaatcacaatcatatagtatcggagaagcccgtgcgtcagtccatccgatcttctctgttctatgactttctcacacata
gi|8 : aTTATGTTTTCGACCTAGACG---GTAC-CT-GCTA----GATC-AG---GTTTTTGACCGAG--TAAT---AC---------AG-TATTCGACCGAGAGATAC-------------T---GTC------TTCGACAGACGCA-TTTGAT-------ATT-ACTTTAAACATT--------TTATTTTT-CATGAAA-TAAAA-AT-------TAATATACACAA--TAT-AAGTCAAAAAA---GTT---------TA-A----A--ATACATCAA-----TAGA--------------A------TGTATATGAATTATGT----A---------------GG--TAC---TGT-T-T-T-T-ATG---G---T-------GTATG--TTTGT----TGTTATTG-T--A----TACCAGTTTTTA-ACGAAGAACA------ATTGT---GGAATTGCAAAATCTT-CGTTTTCAT---AAAAATAAGA-T--TT-A--TTGT-----TACAAAAAGTCTGA-CATTA-ACTGT-T-CAATAAAATGTAT-TTTAATGTATTT-----TAATA-GCATT---GCTAA---TGTTTCAATATA---------T---------TC---------AA---AG------GG----AAAT---TTC--C-TGTGATACGGTTTTCGTCGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGATATTCGATATTCATTCA-CAAATTGTATTTTTATTTTTTTCAATGAATAACC-TA-TTTT-GCGTAAC-ATAT-ATGAG-TCTTTAAAGG-ATC-ATATA-----------TACATTATA-AAATAtgccttgtgttcttcaatcacaagcatatagtaccggag
gi|9 : atgaatattgtgatG---ATATACC-AATATTGCAATTTAT---GTTTTTGACCGAGACTG-T---ACTCGCTTTCAGG-TTTTTGACAGAGAGATAC-------------T---GTC------TTTGACAGACGCA-TTTTATCAGGGTTACCGACTT--AAGGTATTATTTTTTTATTTTT-CATACAA-TACAC-AC-------GAATATACACAA--TAT-TAGTCATAAAA---GTTACATAAATATA-A----T--GTATATCGA-----TGAATTAT----------G------T-------------------A---------------GG--TTT---TGT-T-T-T-T-ATG---G---T-------GTGTGTCT--GT----TGTTATT-------------------------GACAAACT------CTAGT---GGAATTGCAAAAA-----------------AAAATCAGAAC--TTGA--GTGT-----T-----AAAT-------TT---ATGTAT-TGATA-----TAT-TTTAATGTCTTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGTTTAATTATAT---------TA---------GA---AT------GT----ATAT---TTC--C-TACGATATGGTTTTCAAAGTTATTGGAAAATGGCCGGTATGG-TTTCCG---T-TG-TTGATACGGTATACGATACTCATTCA-GGAA------------TTTGTT-AATGAACAAAA-TATTTTT-GAGTAAT-ACCT-ATGAA-TC--------------TTTA-AAGATGTATTCAGATTTTA-TAATACA-TTTTGTATTACTT-AACTGCCATTTC---TACATATCATGCAGACA---TATCTTCAAAT--AGTgtgatttt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TAGACTGACTGGTGCTATAACAACCAATCATCAAACAGTGTAGACTGACTGGTGCTATAACCTAGTATGTTCTTCAAGCACAATCATACTGTATCTGTTATTGGCCTAGTTTAACAAATTCTGCGTCGTATTTCATTTGGCTCTCCCGTCA
Unaligned ( gi|27 ): TTGTTTCATGCTCTTGCGGGGGTCTTATCTTGTGTTTACGTTCTCGTAATCTACACTTCTCATCGCCTCTATTTGTGACTATGTAATAGGTGGTAAGGTCA
Unaligned ( gi|28 ): TGTGTCTTGTATGGCTTATTATGTTTGGTCCCAACAAAAGATGCATTTCCGGTTGAATTCTTGATTTATTAGCAAATATCATT
Unaligned ( gi|29 ): TCAATGATTTTTAATTTTAACAGAGTCATGGGCTTTCTTAAGAAATGATAAGTATT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 555555555555 1111111111111 111111111 1111111 222222222222222222222222222222222222222222222222222 2222222222222222222222222 222 5555555555555555555555555555555 111111 66666666666666666666666 2222 111 222222 22222222 222222 111 11 77777777777777777777777 333333 1 11 1 1 11 4444444 1 33 33333
lowQualScore : 3 999999999999 555 0 444 2 0 2 4444444444444 444 777777 2 2 2 0 1 1 2 1 99999999 2 2 2 8888888 33 2 444 2 000000000 2 8888888 444 1 111111111111111111111111111111111111111111111111111 33 444 555 2 666 4444444444444444444444444 5555 2 33 5555 666666 4 2 777777 444 2 888 0 111 33 2 33 999999 33 0 2 2 2 2 0 3 2 0 2 2 2 2 666 1 6666666666666666666666666666666 666 000000 5555 5 444 33 2 2 2 2 2 2 1 2 2 77777777777777777777777 3 3 3 4 4 666 7777 000 555555 0 44444444 333333 77 777 33 3 1 1 66666666666666666666666 22 1 1 000000 1 1 5 88 1 3 6 3 44 9999999 3 0 0 0 0 44 3 55555
lowQualScore : . ............ ... . ... . . . ............. ... ...... . . . . . . . . ........ . . . ....... .. . ... . ......... . ....... ... . ................................................... .. ... ... . ... ......................... .... . .. .... ...... . . ...... ... . ... . ... .. . .. ...... .. . . . . . . . . . . . . . ... . ............................... ... ...... .... . ... .. . . . . . . . . . ....................... . . . . . ... .... ... ...... . ........ ...... .. ... .. . . . ....................... .. . . ...... . . . .. . . . . .. ....... . . . . . .. . .....
lowQualScore : 3 000000000000 000 9 777 5 5 7 7777777777777 777 777777 7 7 7 1 5 1 1 1 77777777 5 5 5 1111111 44 4 444 5 000000000 5 1111111 444 0 222222222222222222222222222222222222222222222222222 44 444 888 5 000 6666666666666666666666666 0000 4 22 0000 888888 7 1 222222 444 7 222 8 000 77 5 44 111111 44 4 5 5 5 5 9 4 5 6 5 5 5 5 999 6 0000000000000000000000000000000 555 000000 0000 3 444 44 4 7 7 9 9 9 7 9 9 22222222222222222222222 1 1 3 5 5 444 1111 111 222222 8 22222222 000000 00 555 88 2 0 0 55555555555555555555555 00 0 0 000000 0 0 5 55 0 3 7 3 00 0000000 3 7 7 7 7 00 7 77777
consensus : GTTATGTTTTCGACCGAGACGGTA-C----TCGCT-C-T---CAGGTTTTCGACCGAGTAAT---ACGGTAT-TCGACCGAGA-GGTAC-------------T---GTC------TTCGACAGA-C-GCA-TTTTATCAGGGTTACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAA---AA-GTT---------TA-A----T--ATACATAAA---TANA--------------AT-------------------A---------------GG--TAC---TGT-T-T-T-T-ATG---T---T-------GTGTG--T--GT----TGTTATTG-T--A----TA------TTTA-ACGACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAAGAAAATGTGAAT--TT-A--TTGT-----TA--AAAAATCAGA-AATTA-AATGT-T-TAATACAATGTAT-TTTAATGTATTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGT---------T---------TC---------GA---AT------GT----ATAT---TTC--C-TGTGATACGGTTTTCGACGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCGATACTCATTCA-GGAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GCGTAAT-ATCT-A-GAA-TCTTT-AATG-ATC-ATTTA-AAGACGTTTTCACATTATA-TAATACA-TTTTGTANTACTTAAACTGCCATATC---TACTTACCATGCAGATA--CTGTCTTCAAAC--AGTGCAT--TG--ACTTATAAT----G---ATAT------AAATAGTGCATGNAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTTTCTCATATCAGTTNATTTATACTTCTATTCATNTGTAAACATTTGTAAAAAGTAAACGTCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACANNGGAGTGTGTCAGCNTCCGATATTAATAATTTAATATCTACACTTGTNCACAAACATACTAATTCGGGCTCATAAAGCAGANAGGGTATTTATTATTATCTAAATTATTGCAATTTATTCTATTTNTATAAAATCAATGTCGAAAATGCTTGTTAATGAAATTNAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGT-ACTGTATATGAATATTGTCGTTTT-A-TA-GAAA-AGTAGACGATTTCAGTACATATCCTGTATACGTTATCGAACGAGAACTAAGAAGTGATAGATCTATCATCACGCGTGATGAAGCCTCGATGACAA-TTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGGGACATCGAAAGCAATTA----TTTTTTAGATC
Reference ( family-584 ) : GTTATGTTTTCGACCGAGACGGTA-C-CGTTCGCNAT-T---CAGGTTTTCGACCGAGTAAT---ACGGTAT-TCGACCGAGA-GGTAC-------------T---GTC------TTCGACAGA-C-GCA-TTTTATCAGGGTTACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAA---AA-GTT---------TA-A----T--ATACATAAA---TANA--------------AT-------------------A---------------GG--TAC---TGT-T-T-T-T-ATG---T---T-------GTGTG--T--GT----TGTTATTG-T--A----TA------TTTA-ACGACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAAGAAAATGTGAAT--TT-A--TTGT-----TA--AAAAATCAGA-AATTA-AATGT-T-TAATACAATGTAT-TTTAATGTATTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGT---------T---------TC---------GA---AT------GT----ATAT---TTC--C-TGTGATACGGTTTTCGACGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCGATACTCATTCA-GGAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GCGTAAT-ATCT-A-GAA-TCTTT-AATG-ATC-ATTTA-AAGACGTTTTCACATTATA-TAATACA-TTTTGTANTACTTAAACTGCCATATC---TACTTACCATGCAGATA--CTGTCTTCAAAC--AGTGCAT--TG--ACTTATAAT----G---ATAT------AAATAGTGCATGNAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTTTCTCATATCAGTTNATTTATACTTCTATTCATNTGTAAACATTTGTAAAAAGTAAACGTCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACANNGGAGTGTGTCAGCNTCCGATATTAATAATTTAATATCTACACTTGTNCACAAACATACTAATTCGGGCTCATAAAGCAGANAGGGTATTTATTATTATCTAAATTATTGCAATTTATTCTATTTNTATAAAATCAATGTCGAAAATGCTTGTTAATGAAATTNAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGT-ACTGTATATGAATATTGTCGTTTT-A-TA-GAAA-AGTAGACGATTTCAGTACATATCCTGTATACGTTATCGAACGAGAACTAAGAAGTGATAGATCTATCATCACGCGTGATGAAGCCTCGATGACAA-TTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGGGACATCGAAAGCAATTA----TTTTTTAGATC
gi|1 : GTGAT-T---TATGTTTTCGACCGAGTAAT---ACGGTAT-TCGTCCGAGA-GATAC-------------T---GTC------TTCGACAGA-C-GGAATTTTA-AAGGGTAAGTAACTTTGAAGGTA--------TTATTTTT-CATGAAA-TAAAT-GT-------GAAAATACACGA--TAT-ACGTCGCAA---AA-ATT---------TG-A----T--AAACATAAA---TATA--------------AT-------------------A---------------GG--TAC---AGA-T-T-T-T-ATG---T---T-------GTCTG--C--GT----TGTTATTG-T--A----T-------TTTA-ACACCGAACA------CTAGT---AGAATTGCAAAAACTG-CGTTTTTATCAAGTAAATGTAAACAGTT-A--TTGCCTTTCTA--CAAAATCAGA-AATTA-AATGT-T-TGATAGAATGTTTGTTT--TGTATTTTGC-ATAA-A-ACAATTG-AATAA---CAATACA--------------T---------TC---------AA---AA------AT----ACAT---TTC--C-TATGATTCGATGTTGGACGTTGTTTAAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCAATACTCATCCA-GGATTTGTGTATACATTCTGTT-GATGAATAAAA-TGTATTC-GCGTAAT-ATTT-A-AAAATTCTT-AATG-ATCGATTTA-AAAATGTTTCCACAT-ATA-TAATACA-TTTTGAAATACTTATACTGCTAT-CC---CGCTTTCT-TGCATATAGCCTGTCT-CAGA----GTGCAT--AC--ATTTATAAT----G---ATAC------AAACAGTGTGTGAAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTGTCTCATATCAGTTTATTTATATTTCTATTCATTTGTAAACATTTGTAAAAAATAAACATCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACAGTGGAGTATATCAGCATCCGATATTAATAATTTAATATCTACACTTATTCACAAAC------ATTCGGGCTCATAAAGCAGACAGGGTATTTATTATTATCTAAATTATTGCAATTTATTTTATTTATATAAAATC-ATGTCGAAAATGCTTATTAATGAAATTAAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGT-ACT-TGTATGAATATTGTTGTTTTAA-TA-GGAATAGTAGATGATTTCAGTACATATCCTGTATATGTTACCGAACGAGAACTAAGAAGTGATAGATCTATCATCATGCGTGATAAAGCCTTAATGACAATTTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGTGACACCGAAAGCAATTACTAGTTTTTTAGATC
gi|10 : gtcacttccgaacgctgatatacccgaact-T---CATGTTTTCGACCAAGTAAT---ACGGTAT-TCGACCGAGC-GATAC-------------T---GTT------ATCGACAGA-C-GCT-TTTTATCAGGGTAACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACAG--CAG-TAGTCGCAA---AA-GTT---------TA-A----A--TTAGATTAA---TAGA--------------ATGCATACGAATTATGT----A---------------GG--TTC---TGT-G-T-TATGATG---G---T-------GTGTG--TCTGT----TGTTATTG-T--A----TA------TTTA-ACGACAAACT------CAAGG---GGAACTGCAAAAACTT-CGTTGTCATAAAGAAAATGTGA-T--TT-A--TTGT-----AA--AAAAATCATA-ACTTA-AACGT-T-AAATACAATGTAT-TTTAATGTATTTCGC-ATAA-A-ACAATTG-AATAA---CAATGCAATAAT---------T---------TC---------GATATATTCGAAGGT----AAAT---TTT--C-TGTGATACCGTTT-CGACGTTATTGGAAATTGGCCTGTAAGG-TTTTCGTCAT-TGATCGATTGGGTATTCGAT---------------TGTATTTACATTTTGTT-AATGAATAAAA-TGTTTAT-GCGTAAT-ATCT--------------ATGCAT--ATTTA-AAGATGTTTTCACATCATA-TAATACA-TTTTGTA
gi|11 : ggtataccaaaattgcgttttttactgtacatgcccGTTACCTTTTCGACCGAGACG-TA-C----TCGCT-T-T---CAGGTTTTCGACCGAG--AT----CGGCAT-GCGACCGAGA-TGTAT-------------T---GTT------TTCGACAGG-C-GCA-TTTAATCAGGGTTACTGACTTTAAGGGTA--------TTATTTTT-CATGAAA-TA-----T-------AAGTATACACAA--TAC-TAGTAACAA---AA-GTT---------TGGA----T--A-ACATAAA---TAAA--------------ATTTATACGAATTATACTGGCA---------------GGCCTAC---TGT-T-T-T-T-ATGGC-T---T-------GTGTC--T--GT----TGTTATTG-T--A----TA------TTTA-ACGGCGAACA------CTAGT---AGAATTGCAAAAGCTT-CGTTTTCAACAAG-AAATGTG-AT--GT-G--TTGT-----AA--AGAAATCAGA-AATTA-AATGT-C-AAATACAACGTAT-TTTGATGTATTTCGCAAAAA-A-ACATTTG-AATAA---CATTGCAATAGT---------T---------TC---------AAT--AT------ATTCGAATATAAATTC--T-TGTGATACGGTTTTCGACGTTACTGGAAAAGTACGGGTTCGGTTTTTTGTCAT-TGATTGCTACGGTATTCGATACTCTTTAA-GGAATTGT
gi|12 : gtggataggcctatattgtgaTTATGTTTCTGACCGAAACGGTA-C----TCGCT-C-T---CAGATTTTCAACCGAGTAAT---ACGG-ATATCGACCGATA-GATAC-------------T---GTC------TTTGACAGG-C-GAA-TTTCATTTTGATTACTGACTTTAACAGTT--------TTATTGTT-CCTGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAAAATAA-GTT---------CA-AATTGC--ATATATAAAATGTATATGAATTAT------GT-------------------A---------------GG--TAC---TGT-T-T-T-A-ATG---T---TTTATGGCGTGTGTCT--GT----TGTTATTG-C--A----TA------TTCA-ACGGCGAACA------CTAGT---GAAATAGCAAAAACTT-CATTTTCATCAAGAAAATTTG-AT--TT-A--TTGA-----GA--AAAAGAGAGA-AATTA-AATGA-T-GAATACATAATAT-TTTAATGAATTTCGC-ATAA-A-ACATTTG-AATAT---CAATGCAACAGT---------T---------TC----------A---AT------AT----AT
gi|13 : gatataccaatattgctatAT--TT-A--TTGT-----TA--AGAAATCAGA-AATTA-AATAT-T-TAATACAATGCAT-TTTAATGTATTTCGC-ATCA-A-ACATTTG-AATAA---CAATGCAATAATATA------T---------TG---------TA---AT------GA----TTAT---TTC--C-TGTGATACGGTATTCGACGTTATAAGAAAATGGCCGGTACGA-TTTTCGTCAT-TGATTGATACGGCATTCGATACTTATTCA-AGAATTGTATTCACATTTCGTT-AATTAAAAAAA-TA-TTGT-GCATATT-GTAT-ATGAC-TCTTT-AATG-ATCGATTT--AAGACATTTTCACATTAAA-TAATACC-TGTTGTATTACTTAAACTGCCATATC---TACTTACCATGCAGATA---TATCTTCCAAC--AGTGCATTGTG--ACTTATtcga
gi|14 : g-TGTGATACAGTTTTCGACGTTGTTGGAAAATGACCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTTGATACTCATTCA-GAAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GTGTAAT-ATCT-ATGAA-TC--------------TTTA-AAGACGTTTTCACATTATA-TTATACA-TTTTGTAATACTTAAACTGCAATATC---TACTTATCATGC--ACA--GTGTCATGTAACTAAGT-CAC--TA--GCATGCA------G---ATATCTCTTCAAACAGTGCATttgttcttcaatcacaatcatatagtatcgga
gi|15 : TTATGTGTTTGACCGAGGCGGTA-C----TCGCT-C-T---CAGGTTTTTGACTGAGTTAA---ACGGTAT-TCGACCGAGG-GGTACATTTTAAAAAGGGT---GTCACCTGTTTTGATGTA-T-ATG-TTTCGTTAAGG----TGATTT-----GTC--------ATATTTTT-TTTAAAAGTAAATAAT-------AGATAT---CGA--TAT-tgcgacttgtgtgttcttcaaacataattacgttgtatcggagtatg
gi|16 : tgattgtgcttttatggcttatataatgtcatgttccaacgaaagttgcatttccggccgggacctcgattaattaccaaatataattaccacagtgaataaaccaatattttcgatTTATGTTTTCGACCGTGACGGTA-C----TCGCTCT-TAAGCCGGTTATCGACCGATTAAT---ACGATAT-TCGACCGAAA-GGTAT-------------T---GCC------TTCGACAGA-T-GCA-TTTCATCAGGGTTACTGACTTTAA-----------------------ATAAAA-TGAAC-AT-------GAATATACACGA--TAG-TAGTCACAA---GA-GTT---------TA-A----A--TTACATAAA---TTGA--------------AT------------------------------------G--TA------T-A-T-T-A-AT-------------------TA--T--GT----TTTTATTG-T--A----TA------TTTA-ACGACCAACA------CTAGT---ATAATTGCAAAAACTT-CGTTTTgatccagcgaatataagttc
gi|17 : atataccaatattgcgaTTATGTTTTCGACCGAGTCGGTA-C----TCGC-AC-T---CAAGTTTTCGACCGAGTTGT---ACGCTAT-TCGATCGAGA-TGTAC-------------T---GTC------TTTGCCGGA-C-GCA-TTTTATCAGGGCTAACGACTTTG--------------------TT-CATGAGA-TAAAT-AT-------GAATATACACGA--TAT-TAGACACAC---AA-TTT---------TT-A----A--ACACATAGA---TAGA--------------AT------------------------------------G--TA----TAT-GAC-T-T-ATG---TAGGT-------ATGTA--T--GT----TCTTATTG-T--A----TA------TTTA-ACAACGAATA------TTAGTAAAGGAATTGC-AAAACTT-TGTTTTCAagttttagtatttattttaaag
gi|18 : tgcatataccagctttgtgct--T--GC----TGTTATTG-CTAA----TA------TGTACAC------TA------CTGGT---GGGCGTTCAAAAACTG-AGTTTTTGTCAATAAAATGT---T--GT-AAGTTGT------A--AACATTTAGATAAGTA-AATGT-TATAATA------AT-T--AATGCATTTCGC-ATAA-ACACTTTTG-AATAA---CGATGCAATAAT---------T---------TC----------A---AT------AT----A------TTC--G-T-TTATATAGTTTTaa
gi|19 : tgctatAT-TAATTACAT---AA-ATA---------TA-A----T--GTATACGAA---TTAT--------------GC-------------------C---------------GG--TGC---TGT-G-T-T-T-AT-------------------CG--T--GT----TGTTATTGAT--ACTCGTA------TTTA-ACAACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAGGAATATGTG-AT--TT-A--TTG------TA--AAAAATCAGA-AATTA-AATGA-A-TAATTCAATGTAT-TCCAATGTATTTCGT-ATAA-A-A----TGCAATAGTTTCAATATAA-----------------------TC---------GA---AT------GT----A-AT---TTT--CGTGTGATATCGTTTTCGGCGTTATTGGAaatgagactgtattcggagcaaagtcccggcatcaaaacgtatatacacaaatgcaatacttaattggaagactatttcacatcacattggt
gi|2 : gc-GTT---------TA-G----T--ATACATAAA---TATA--------------ATGTATATGCATTATAT----A---------------GG--TAC---TGT-T-T-T---ATG---T---T-------GTCTG--TCCGT----TGTTATTG-T--A----CT------TTTA-ACACCGAACA------CTAGT---AGAATTG-AAAA
gi|2 : -A--TTG-------A--AAATATCAGA-AATTA-AATGT-T-TAATACAACGT-T-TTTATTGTATTTTGA-ATAA-A-CCAATTG-AATAA---CAATGCAATAGT---------TATAATATATTC---------GA---AT------AT----ATAT---TTC--C-GATGTTACGGTTTTCGACGTTGTTGAAAAATGGACGGTACGG-TTTTCGCCAT-TGATTGATACGGTTTTCGATGCTCATCCA-GAATTTGTATATACATTCTGTT-ATTGAATAAAA-TGTATTT-GCGTAAT-ATCT-AAGAA-TTTTT-AATG-ATCTATTTA-AAAATGTTTTCACAT-ATA-TAATACA-TTTTGAAATACTTAAACTGCTATCCCGCTTTCTTAC-ATGTTGC----CTGTCT-CAAA----ATGCAT------------AAT----G---ATAT------AAATAATGCATGGAATATAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGTATTTTCTCATATCAGTTGATTTATACTTCTATTCATGTATAAACATTTGTAAAAAGTAAACGTCATAATCTTGT-----------------------GCGTGTTACACAGGAGTGTGTCAGCCTCCGATATTAATAATTTAATATCTACACTTGTGCACAAACATACTAATTCGAGCTCATAAAGCAGAGAAGGTATTTATTATTATTTAAATTATTGCAATTTATTCTATTTTTATAAAATTAATGTCG--AATGCTTGTTAATGAAATTTAAATACTCTTTTGAAG-CTAGTTAATCTTTGATTGGATTGTGT-AC-GTATATGAATATTGTCGTTTT-------AAA-AGTAGATGATAACAGTACATATCCTGTATACGTTATCAAATGAGAATTAAGAAGTGATAGATCTATCATCACATGGGATGAAGCATCGATGACAAGTTCAGTTTTTACAAGTTTCCTATATTTAATTGTATAACTGGGGACATCGAAAGCAATTA----TTTTtatcagaaattaaatgtttaatacaacgtttttattgtattttgaataaaccaattgaataacaatgcaatagttataatatattcgaatatatatttccgatgttacggttttcgacgttgttgaaaaatggacggtacggttttcgccattgattgatacggttttcgatgctcatccagaatttgtatatacattctgttattgaataaaatgtatttgcgtaatatctaagaatttttaatgatctatttaaaaatgttttcacatatataatacattttgaaatacttaaactgctatcccgctttcttacatgttgcctgtctcaaaatgcataatgatataaataatgcatggaatataatttgcatctcattttcgtagtcagtgttgtattttctcatatcagttgatttatacttctattcatgtataaacatttgtaaaaagtaaacgtcataatcttgtgcgtgttacacaggagtgtgtcagcctccgatattaataatttaatatctacacttgtgcacaaacatactaattcgagctcataaagcagagaaggtatttattattatttaaattattgcaatttattctatttttataaaattaatgtcgaatgcttgttaatgaaatttaaatactcttttgaagctagttaatctttgattggattgtgtacgtatatgaatattgtcgttttaaaagtagatgataacagtacatatcctgtatacgttatcaaatgagaattaagaagtgatagatctatcatcacatgggatgaagcatcgatgacaagttcagtttttacaagtttcctatatttaattgtataactggggacatcgaaagcaattatttt
gi|20 : gtttagtatacataaatataatgtatatgcattatataggtactgttttatgttgtctgtccgttgttattgtacttttaacaccgaacactagtagaTTTTTGAGTACACTTCAT-TTTAACCTTGCTATGCCGCTGTATATGAATATTGTCGTTTT-ACTACAAAA-AGTAGACGATTTCAGTACATATCCTGTGTATGTCATCGAATGAGAACTAAAAAGTGATAGATCTATCATCACGTCTGATGAAGCCTCGATGACAA----------------TTTCACATATTTAACTGAATAACTGGGGACATCGTAAGCAATTA------TTTTAGATC
gi|21 : TT-AATGAATAAAA-TGTTTTTTGCGTAAC-ATCT----------TT-G--G-ATC--TTTA-AAGGCGTTTTCACATTATA-TTAAACA-TATTGTA----TTAAACTTCCATATC---AACCTACCATGCAGATA-----TATT-------AGTGCAT--TGTAACTTGTttttt
gi|22 : AT--TA-A--TTGT-----TA--AAAA-TAAAA-AAATA-AACGT-T-TAATACAATGTAT-TGTATTGTTTTTCTC-ATAG-A-ACATTTG-AATAA---CAATTCAATAGT---------T---------TCAATATATT-GG---ATTG----GT----ATAT---TTT--A-CATGATATAATATCGGATGTTATTGGAAAATGGACAGAATGG-TTTTCGTCACATGATTTATGCGGTATTCGATACTCATgtgtttgttattcaatcataatcataataatagtatcgaagcatgtccgtgcgtctgtccgtccgatattgtccgtgta
gi|23 : gATGTAATA-----------T---------TC---------GA---AT------AT----ATAT---TTC--C-TATGATACGGTATTCGACGTTATTTGAAAATGGACGGCACGG-GTTTCGTCAT-TGACTGATACGGTATCCGATACTCATC------------TTTACAATTTGTT-GATGAGTAAAA-TGTATTT-GCTTAAT-cattata
gi|24 : catagaattgtgatatttTTATGATTTCGACCGAGACGGTT-C----TCGCT-C-T---CAGGTTTTCGACAGAGTAAT---ACGGTAT-TCGTAAGAGA-GGTAT-------------T---GTC------TTCGGCAGA-C-ACT-TTTCATAAAAGTAAGAGACTTTGAGGGTA--------TTATTTTC-CATGAAA-TAAAT-AT-------GAAAATACACGA--TAT-TAGTCGCAA---gattattgaatactcaactgtagcatctcctaatattaa
gi|26 : tatataccagaactgcgat-CATG----TAAAT-AC-------GAATATACACAA--TAA-TAGTCACAA---AA-GTT---------TA-A----A--TTACATCAA---TAAA--------------ATGCATATGAATTATGT----A---------------GG--TTC---TGA-T-T-A---ATG---G---T-------GTGTG--TCTGG----TGTTATTG-T--A----TA------TTTA-ACAATGAAC
gi|3 : acagttttcgctactataTTATGTTCTCGACCGAGACGGTA-C----TCGCT-T-T---CAGGGTTTCGACCAAGTGATGATACGATAT-TTGAGTAAGA-TGTAC-------------TACTGTC------TCCGACAGA-C-ACA-TTTTATCAGAATTATTGACTTTGAAGGTA--------CTATTTTT-CACGATA-AAAAT-AT-------GAATATACACGA--TAT-TTGTCACAA---ATTGTT---------TA-A-------ATACATAAA---TAGA--------------AT-------------------GTATATGAATGATGTGAG--TAC---TGT-G-T-T-T-GTGGGGT---T--------TGTA--T--GT----TGTAATTG-T--A----TA------ACTA-ACTACAAACA------TAAGT---GAAACTGCAAAAACTT-T----------------TGT-AAT--TT-A--TT-T-----TA--AAAAATCGGA-AATCG-AATGT-T-TAAAACAATGTAT-TGTTTTGTATTTCGC-ATAA-A-ACATTTG-AATTA---AAATGCAATAGTTTCAATATAT---------TC---------GA---AT------TC----ATAT---TTC--A-AATGATACGGTATAAGGCGTTATTGGAAAA-GGACGGAACGG-TTTTCGTCAT-TGATTGATATTACATTCGGTACTCA-TCATGGAATTGTACTTACATTTTGCT-GATGAGCAAAACTAAATTT-GCTTAATGATCA-T-GAA-TCTTT-AATG-GTCGATTT--AAGACGTTCCCACA-TATA-CAGTACA-TTTTGTAATCCTTAGACTGCCATATC---TACTTGTCATACACATA--C-ATCTTCAAAC--ATTGCAT--TGTAACCTATGATCTTCGACCACAT------AAATATAGTAT---CTGTTACTGGCATTGTTTTATAAATTCTTTGTC-GTTTTCCATTTGTTCATACCtag
gi|30 : tggatataccaatatgcgatTTGCGAT-T---TATGTTATCGACCG----AT---ACGGTAG-TCGgt
gi|30 : agtgtagataccaataTTATGTTATCGACCGATACGGTAGT-CGCTCctct
gi|4 : agtgtagataccaatattgcgatTATGTTTTCGACCGAGACGGTA-TACGCTC------T---CAGGTTTTCGACCGAGTAAT---ACGGTAT-TCTTTCGAGA-TGTAT-------------T---GTC------TTCGACAGA-C-GAA-TTTTATTAGGGTAAGTGTTTTTTAAGGTA--------TAATTTT--CATGAAA-TAAAT-AT-------GAAAATACACGA--TAT-TAGTCGCAA---AA-TTT---------TA-A----T--ATACGTAAA---TATA--------------AT------------------------------------G--TACAAATAT-G-CAT-T-ATA---T---A-------G---G--T--AC----TATTATT------------------TTTACAC--CGAACA------CTAGT---AGAATGGCAAAAACTTGCGTTTTCAT----GAAATGTTA-T--TA-A--TT-T-----TA--AAAAATCAGA-AATTA-AATGT-T-TAATACAATGT-T-ATTATTGTATTTTGC-ATAA-A-ACAATTG-AATGA---CAAGTCAATATT---------T---------TCTATATATTCGA---AT------AT----GTTT---TTT--C-CATGATACGTTTTTCGACGTT---GAAAAATGGACGGTACGG-TTTTCGTTAT-TGATTGATACGATTTTCAATACTCATCCA-GGATTTGCATATACATTCTTTT-TATGAATAAAA-TGTTTTT-GCGTTAT-ATTTAA-GAA-TCTTT-AATG-TTC-GATTACAACATGTTTCCACA-TATA-TAATACA-TTTTGAAATACTTAAACTGCTAT-CC---TGCTT-TCATGCATGTAGCCTG-CCTCAG----AATGCAT--AG--ATTTATAAT----A---ATAT------AAATAGTGCATGCAATGTAATTTGCA---TCTTAT--TTTCGTAGTCAGTGTTGCATTTTCTTATATCAt
gi|5 : atggatatacaaaaattgcgatgTTATGTT--CGACCGAGACGGTA-C----TCGCT-C-T---CACGTTT-CGACTGAGTAAT---ACGATCT-TCGACAGAGA-GTTAC-------------T---GTC------TTCGACAGA-T-GCA-TTTAATAAGGGTTACTGGCTTCAAAAGTA--------TTATTTTT-CATCAAA-TAAAT-AT-------GAATATACACTA--TAT-TAGTAACAA---AA-ATT---------TA-A----T--TTACATAAA---TATAGTGTATATGCATATGT-------------------A---------------TG--TAC---CAT-T-T-T-T-ATG---T---T-------GTGTGTCT--GT----TGTTATTG-T--A----TA------TTTA-ACGACGAACACATAGTCTAGT---GGAATTGTAAAAACTT-C-----------GAAAAC-TAAA----------TGT-----TA--AA------------TACAATG------------TGT---TTGAATGAATTTCGC-ATAA-A-ACATTCG-AAAAA---CATTGCAATAGT---------TTCAATACAGTC---------AA---AT------GT----AAGT---TTT--C-TGTGATACGGTTTTCGACATAAGTAGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTTTTCGATTCTCATTCA-GGAATTGTATTTATATTTTGTA-AGTGAATAAAA-TGTTTTT-GCGTAAT-ATC--------------AATGAATC--TTTA-AATACGTTTTTACATTATA-TAATACA-TCTTGTATTACTTAAACTGCCATACC---GACTTACCATGCAGATA---TGTCTTCAAAC--AAT-CATTGTG--ACTTATA
gi|6 : tgatatacaaacattacgat---ACGTTAT-TCAAGCGAGA-TA-AC-------------T---GTC------TTCGACAGA-C-GCA-TTTTATCAGGGCTACTGACATTAAAGGTA--------TTATTTTT-CATGAAA-TGACT-ATCGCAAAAGAATGTATATGAATTATGTAGTTACT-------GTT---------TT-A----TGNNNNNNNNNN---NNNN--------------NN-------------------N---------------NN--NNN---NNN-N-N-N-N-NNN---N---N-------NNNNN--N--NN----TGTTATTG-T--A----TA------TTTA-ACGACGAACA------ATAGT---G------CAAAAACTT-CGTTTTCATCAAGAAAATGTTT-T--TT-A--TTGT-----AA--ATAAA--AGA-AGTTG-AATGT-T-TAATACAATGTAT-TTTAATGTATTTCAC-ATAA-A-ACGTTTG-AAAAAA--CAATGCAGTGGT---------T---------TCAATATAATCGA---AT------GT----AAAT---TTTTTC-TGTGATACGGTTTTCGATGTTATTGTAAAATGGCCGGTACGG-CTTTCGTTAT-TGATTGATACGGTATTTGATATTCATTTA-GAAATTGTATTTTCATTTTGTT-AGTAAATAAAA-TGATTTT-GCGTTAT-ATCT-A---------T-GA---ATC-A-TTA-AAGACGTTTTCACATTATATTAAT-TATTTTTGTATTACTTAAACTGCCATATC---TACTTACCATGCAGATA--C-ATATTCAAAC--AGTGCATTGTG--ACTTGTtgttcttcacaatcataataaattcttatatttccgtgcgcgagtccatccgatcatgtccgttcgagaactttctcacacgt
gi|7 : GTTT-TCGACCGAGATGGAAC-------------G---G-----------AACAGAACAGAA-TTTTATCAGGGTTAATGACTTTAAAGGTA--------TTATTTTTTCATAAAA-TAATT-AC-------GAATATACA--A--TAT-TAGTCATAA---AA-GTT---------TA-AATTAC--ATACACAAC---TGTAT-------------AT-------------------G---------------GA--TAA---TGTAT-G-T-T-ATG---T---TTTATG--GTGTT--T--GTCTTTTGTTATTG-T--A----TA------TTTA-ACGACGAATA------TAAGT---GGAATTGCAACATCTT-CGTTTTCATTAAGAAAATCTTA-T--TT-A--TTGT-----CA--AAAAATCACA-AATTT-AATAT-T-AAATACAATGTTT-TTTATTGTATTTCGC-GTAA-A-ACATTTG-AATAA---CAATGCAATAGT---------T---------TCAATATATTCGA---AT------GT----AAAT---T-------GTGACACGATTTCCGACGTTATTGAAAAGTGGCCGGTACTG-TTTTTGTCAT-TGATTGATACGGTAATCGATACTCATTCC-GGAATTGTATTTAC---------------TAAAA-TGTTTTC-GAGAAAT-ATCT-A-------------TG-A-------A-ATGACATTTTCACATTATA-TAATACA-TGCTGTATAACTTAAGCTGCCATATC---TATTTACCATACAGATA---TATCTTCAAAC--AGGGCAT--TG--gtgttcctcaatcacaatcatatagtatcggagaagcccgtgcgtcagtccatccgatcttctctgttctatgactttctcacacata
gi|8 : atattgcgatttatTTATGTTTTCGACCTAGACGGTA-C-C---TGCTAGAT---CAGGTTTTTGACCGAGTAAT---ACAGTAT-TCGACCGAGA-GATAC-------------T---GTC------TTCGACAGA-C-GCA-TTTGAT-------ATT-ACTTTAAACATT--------TTATTTTT-CATGAAA-TAAAA-AT-------TAATATACACAA--TAT-AAGTCAAAA---AA-GTT---------TA-A----A--ATACATCAA---TAGA--------------ATGTATATGAATTATGT----A---------------GG--TAC---TGT-T-T-T-T-ATG---G---T-------GTATG--TTTGT----TGTTATTG-T--A----TACCAGTTTTTA-ACGAAGAACA------ATTGT---GGAATTGCAAAATCTT-CGTTTTCAT---AAAAATAAGA-T--TT-A--TTGT-----TACAAAAAGTCTGA-CATTA-ACTGT-T-CAATAAAATGTAT-TTTAATGTATTT-----TAATA-GCATT---GCTAA---TGTTTCAATATA---------T---------TC---------AA---AG------GG----AAAT---TTC--C-TGTGATACGGTTTTCGTCGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGATATTCGATATTCATTCA-CAAATTGTATTTTTATTTTTTTCAATGAATAACC-TA-TTTT-GCGTAAC-ATAT-ATGAG-TCTTTAAAGG-ATC-ATATA-----------TACATTATA-AAATAtgccttgtgttcttcaatcacaagcatatagtaccggag
gi|9 : atgaatattgtgatTTATGTTTTTGACCGAGACTGTA-C----TCGCT-T-T---CAGGTTTTTGAC----------------------A--GAGA-GATAC-------------T---GTC------TTTGACAGA-C-GCA-TTTTATCAGGGTTACCGACTT--AAGGTATTATTTTTTTATTTTT-CATACAA-TACAC-AC-------GAATATACACAA--TAT-TAGTCATAA---AA-GTTACATAAATATA-A----T--GTATATCGA---TGAATTAT----------GT-------------------A---------------GG--TTT---TGT-T-T-T-T-ATG---G---T-------GTGTGTCT--GT----TGTTATT-------------------------GACAAACT------CTAGT---GGAATTGCAAAAA-----------------AAAATCAGAAC--TTGA--GTGT-----T-----AAAT-------TT---ATGTAT-TGATA-----TAT-TTTAATGTCTTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGTTTAATTATAT---------TA---------GA---AT------GT----ATAT---TTC--C-TACGATATGGTTTTCAAAGTTATTGGAAAATGGCCGGTATGG-TTTCCG---T-TG-TTGATACGGTATACGATACTCATTCA-GGAA------------TTTGTT-AATGAACAAAA-TATTTTT-GAGTAAT-ACCT-ATGAA-TC--------------TTTA-AAGATGTATTCAGATTTTA-TAATACA-TTTTGTATTACTT-AACTGCCATTTC---TACATATCATGCAGACA---TATCTTCAAAT--AGTgtgatttt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TAGACTGACTGGTGCTATAACAACCAATCATCAAACAGTGTAGACTGACTGGTGCTATAACCTAGTATGTTCTTCAAGCACAATCATACTGTATCTGTTATTGGCCTAGTTTAACAAATTCTGCGTCGTATTTCATTTGGCTCTCCCGTCA
Unaligned ( gi|27 ): TTGTTTCATGCTCTTGCGGGGGTCTTATCTTGTGTTTACGTTCTCGTAATCTACACTTCTCATCGCCTCTATTTGTGACTATGTAATAGGTGGTAAGGTCA
Unaligned ( gi|28 ): TGTGTCTTGTATGGCTTATTATGTTTGGTCCCAACAAAAGATGCATTTCCGGTTGAATTCTTGATTTATTAGCAAATATCATT
Unaligned ( gi|29 ): TCAATGATTTTTAATTTTAACAGAGTCATGGGCTTTCTTAAGAAATGATAAGTATT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 1111111111111 111111111 1111111 222222222222222222222222222222222222222222222222222 2222222222222222222222222 222 5555555555555555555555555555555 111111 66666666666666666666666 2222 111 222222 22222222 222222 111 11 77777777777777777777777 333333 1 11 1 1 11 4444444 1 33 33333
lowQualScore : 44 7777 555 2 0 2 4444444444444 444 777777 2 2 2 0 1 1 2 1 999999999 2 2 2 8888888 33 2 444 2 000000000 2 8888888 444 1 111111111111111111111111111111111111111111111111111 33 444 555 2 666 4444444444444444444444444 5555 2 33 5555 666666 2 0 777777 444 2 888 0 111 33 2 33 999999 33 0 2 2 2 2 0 3 2 0 2 2 2 2 666 1 6666666666666666666666666666666 666 000000 5555 5 444 33 2 2 2 2 2 2 1 2 2 77777777777777777777777 3 3 3 4 4 666 7777 000 555555 0 44444444 333333 77 777 33 3 1 1 66666666666666666666666 22 1 1 000000 1 1 5 88 1 3 6 3 44 9999999 3 0 0 0 0 44 3 55555
lowQualScore : .. .... ... . . . ............. ... ...... . . . . . . . . ......... . . . ....... .. . ... . ......... . ....... ... . ................................................... .. ... ... . ... ......................... .... . .. .... ...... . . ...... ... . ... . ... .. . .. ...... .. . . . . . . . . . . . . . ... . ............................... ... ...... .... . ... .. . . . . . . . . . ....................... . . . . . ... .... ... ...... . ........ ...... .. ... .. . . . ....................... .. . . ...... . . . .. . . . . .. ....... . . . . . .. . .....
lowQualScore : 22 1111 000 7 5 7 7777777777777 777 777777 7 7 7 1 5 1 1 1 999999999 5 5 5 1111111 44 4 444 5 000000000 5 1111111 444 0 222222222222222222222222222222222222222222222222222 44 444 888 5 000 6666666666666666666666666 0000 4 22 0000 888888 4 1 222222 444 7 222 8 555 77 5 44 111111 44 4 5 5 5 5 9 4 5 6 5 5 5 5 999 6 0000000000000000000000000000000 555 000000 0000 3 444 44 4 7 7 9 9 9 7 9 9 22222222222222222222222 1 1 3 5 5 444 1111 111 222222 8 22222222 000000 00 555 88 2 0 0 55555555555555555555555 00 0 0 000000 0 0 5 55 0 3 7 3 00 0000000 3 7 7 7 7 00 7 77777
consensus : GTTATGTTTTCGACCGAGACGGTACTCGCTC--TCA----GGTTTTCGACCGAGTAAT---ACGGTAT-TCGACCGAGA-GGTAC-------------T---GTC------TTCGACAGA-C-GCA-TTTTATCAGGGTTACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAA---AA-GTT---------TA-A----T--ATACATAAA---TANA--------------AT-------------------A---------------GG--TAC---TGT-T-T-T-T-ATG---T---T-------GTGTG--T--GT----TGTTATTG-T--A----TA------TTTA-ACGACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAAGAAAATGTGAAT--TT-A--TTGT-----TA--AAAAATCAGA-AATTA-AATGT-T-TAATACAATGTAT-TTTAATGTATTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGT---------T---------TC---------GA---AT------GT----ATAT---TTC--C-TGTGATACGGTTTTCGACGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCGATACTCATTCA-GGAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GCGTAAT-ATCT-A-GAA-TCTTT-AATG-ATC-ATTTA-AAGACGTTTTCACATTATA-TAATACA-TTTTGTANTACTTAAACTGCCATATC---TACTTACCATGCAGATA--CTGTCTTCAAAC--AGTGCAT--TG--ACTTATAAT----G---ATAT------AAATAGTGCATGNAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTTTCTCATATCAGTTNATTTATACTTCTATTCATNTGTAAACATTTGTAAAAAGTAAACGTCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACANNGGAGTGTGTCAGCNTCCGATATTAATAATTTAATATCTACACTTGTNCACAAACATACTAATTCGGGCTCATAAAGCAGANAGGGTATTTATTATTATCTAAATTATTGCAATTTATTCTATTTNTATAAAATCAATGTCGAAAATGCTTGTTAATGAAATTNAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGT-ACTGTATATGAATATTGTCGTTTT-A-TA-GAAA-AGTAGACGATTTCAGTACATATCCTGTATACGTTATCGAACGAGAACTAAGAAGTGATAGATCTATCATCACGCGTGATGAAGCCTCGATGACAA-TTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGGGACATCGAAAGCAATTA----TTTTTTAGATC
Reference ( family-584 ) : GTTATGTTTTCGACCGAGACGGTACTCGCTC--TCA----GGTTTTCGACCGAGTAAT---ACGGTAT-TCGACCGAGA-GGTAC-------------T---GTC------TTCGACAGA-C-GCA-TTTTATCAGGGTTACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAA---AA-GTT---------TA-A----T--ATACATAAA---TANA--------------AT-------------------A---------------GG--TAC---TGT-T-T-T-T-ATG---T---T-------GTGTG--T--GT----TGTTATTG-T--A----TA------TTTA-ACGACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAAGAAAATGTGAAT--TT-A--TTGT-----TA--AAAAATCAGA-AATTA-AATGT-T-TAATACAATGTAT-TTTAATGTATTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGT---------T---------TC---------GA---AT------GT----ATAT---TTC--C-TGTGATACGGTTTTCGACGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCGATACTCATTCA-GGAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GCGTAAT-ATCT-A-GAA-TCTTT-AATG-ATC-ATTTA-AAGACGTTTTCACATTATA-TAATACA-TTTTGTANTACTTAAACTGCCATATC---TACTTACCATGCAGATA--CTGTCTTCAAAC--AGTGCAT--TG--ACTTATAAT----G---ATAT------AAATAGTGCATGNAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTTTCTCATATCAGTTNATTTATACTTCTATTCATNTGTAAACATTTGTAAAAAGTAAACGTCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACANNGGAGTGTGTCAGCNTCCGATATTAATAATTTAATATCTACACTTGTNCACAAACATACTAATTCGGGCTCATAAAGCAGANAGGGTATTTATTATTATCTAAATTATTGCAATTTATTCTATTTNTATAAAATCAATGTCGAAAATGCTTGTTAATGAAATTNAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGT-ACTGTATATGAATATTGTCGTTTT-A-TA-GAAA-AGTAGACGATTTCAGTACATATCCTGTATACGTTATCGAACGAGAACTAAGAAGTGATAGATCTATCATCACGCGTGATGAAGCCTCGATGACAA-TTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGGGACATCGAAAGCAATTA----TTTTTTAGATC
gi|1 : TTATGTTTTCGACCGAG
gi|1 : gtcacttccgaacgctgatatacccgaactgtgatGTTTTCGACCGAGTAAT---ACGGTAT-TCGTCCGAGA-GATAC-------------T---GTC------TTCGACAGA-C-GGAATTTTA-AAGGGTAAGTAACTTTGAAGGTA--------TTATTTTT-CATGAAA-TAAAT-GT-------GAAAATACACGA--TAT-ACGTCGCAA---AA-ATT---------TG-A----T--AAACATAAA---TATA--------------AT-------------------A---------------GG--TAC---AGA-T-T-T-T-ATG---T---T-------GTCTG--C--GT----TGTTATTG-T--A----T-------TTTA-ACACCGAACA------CTAGT---AGAATTGCAAAAACTG-CGTTTTTATCAAGTAAATGTAAACAGTT-A--TTGCCTTTCTA--CAAAATCAGA-AATTA-AATGT-T-TGATAGAATGTTTGTTT--TGTATTTTGC-ATAA-A-ACAATTG-AATAA---CAATACA--------------T---------TC---------AA---AA------AT----ACAT---TTC--C-TATGATTCGATGTTGGACGTTGTTTAAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCAATACTCATCCA-GGATTTGTGTATACATTCTGTT-GATGAATAAAA-TGTATTC-GCGTAAT-ATTT-A-AAAATTCTT-AATG-ATCGATTTA-AAAATGTTTCCACAT-ATA-TAATACA-TTTTGAAATACTTATACTGCTAT-CC---CGCTTTCT-TGCATATAGCCTGTCT-CAGA----GTGCAT--AC--ATTTATAAT----G---ATAC------AAACAGTGTGTGAAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTGTCTCATATCAGTTTATTTATATTTCTATTCATTTGTAAACATTTGTAAAAAATAAACATCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACAGTGGAGTATATCAGCATCCGATATTAATAATTTAATATCTACACTTATTCACAAAC------ATTCGGGCTCATAAAGCAGACAGGGTATTTATTATTATCTAAATTATTGCAATTTATTTTATTTATATAAAATC-ATGTCGAAAATGCTTATTAATGAAATTAAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGT-ACT-TGTATGAATATTGTTGTTTTAA-TA-GGAATAGTAGATGATTTCAGTACATATCCTGTATATGTTACCGAACGAGAACTAAGAAGTGATAGATCTATCATCATGCGTGATAAAGCCTTAATGACAATTTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGTGACACCGAAAGCAATTACTAGTTTTTTAGATCtaatacggtattcgtccgagagatactgtcttcgacagacggaattttaaagggtaagtaactttgaaggtattatttttcatgaaataaatgtgaaaatacacgatatacgtcgcaaaaatttgataaacataaatataataggtacagattttatgttgtctgcgttgttattgtattttaacaccgaacactagtagaattgcaaaaactgcgtttttatcaagtaaatgtaaacagttattgcctttctacaaaatcagaaattaaatgtttgatagaatgtttgttttgtattttgcataaaacaattgaataacaatacattcaaaaatacatttcctatgattcgatgttggacgttgtttaaaaatggccggtacggttttcgtcattgattgatacggtattcaatactcatccaggatttgtgtatacattctgttgatgaataaaatgtattcgcgtaatatttaaaaattcttaatgatcgatttaaaaatgtttccacatatataatacattttgaaatacttatactgctatcccgctttcttgcatatagcctgtctcagagtgcatacatttataatgatacaaacagtgtgtgaaatgtaatttgcatctcattttcgtagtcagtgttgcattgtctcatatcagtttatttatatttctattcatttgtaaacatttgtaaaaaataaacatcataatcttgtgcagttagccccgaaatgataaagcgtgttacagtggagtatatcagcatccgatattaataatttaatatctacacttattcacaaacattcgggctcataaagcagacagggtatttattattatctaaattattgcaatttattttatttatataaaatcatgtcgaaaatgcttattaatgaaattaagatactcttttggagatagttaatctttgatttgattatgtacttgtatgaatattgttgttttaataggaatagtagatgatttcagtacatatcctgtatatgttaccgaacgagaactaagaagtgatagatctatcatcatgcgtgataaagccttaatgacaatttcagttttcacaagtttcacatatttaactgtataactggtgacaccgaaagcaattactagttttttagatc
gi|10 : gtcacttccgaacgctgatatacccgaactgtgatttatACTGTACATGCCC--TCA----TGTTTTCGACCAAGTAAT---ACGGTAT-TCGACCGAGC-GATAC-------------T---GTT------ATCGACAGA-C-GCT-TTTTATCAGGGTAACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACAG--CAG-TAGTCGCAA---AA-GTT---------TA-A----A--TTAGATTAA---TAGA--------------ATGCATACGAATTATGT----A---------------GG--TTC---TGT-G-T-TATGATG---G---T-------GTGTG--TCTGT----TGTTATTG-T--A----TA------TTTA-ACGACAAACT------CAAGG---GGAACTGCAAAAACTT-CGTTGTCATAAAGAAAATGTGA-T--TT-A--TTGT-----AA--AAAAATCATA-ACTTA-AACGT-T-AAATACAATGTAT-TTTAATGTATTTCGC-ATAA-A-ACAATTG-AATAA---CAATGCAATAAT---------T---------TC---------GATATATTCGAAGGT----AAAT---TTT--C-TGTGATACCGTTT-CGACGTTATTGGAAATTGGCCTGTAAGG-TTTTCGTCAT-TGATCGATTGGGTATTCGAT---------------TGTATTTACATTTTGTT-AATGAATAAAA-TGTTTAT-GCGTAAT-ATCT--------------ATGCAT--ATTTA-AAGATGTTTTCACATCATA-TAATACA-TTTTGTA
gi|11 : ggtataccaaaattgcgttttttGTTACCTTTTCGACCGAGACG-TACTCGCTT--TCA----GGTTTTCGACCGAG--AT----CGGCAT-GCGACCGAGA-TGTAT-------------T---GTT------TTCGACAGG-C-GCA-TTTAATCAGGGTTACTGACTTTAAGGGTA--------TTATTTTT-CATGAAA-TA-----T-------AAGTATACACAA--TAC-TAGTAACAA---AA-GTT---------TGGA----T--A-ACATAAA---TAAA--------------ATTTATACGAATTATACTGGCA---------------GGCCTAC---TGT-T-T-T-T-ATGGC-T---T-------GTGTC--T--GT----TGTTATTG-T--A----TA------TTTA-ACGGCGAACA------CTAGT---AGAATTGCAAAAGCTT-CGTTTTCAACAAG-AAATGTG-AT--GT-G--TTGT-----AA--AGAAATCAGA-AATTA-AATGT-C-AAATACAACGTAT-TTTGATGTATTTCGCAAAAA-A-ACATTTG-AATAA---CATTGCAATAGT---------T---------TC---------AAT--AT------ATTCGAATATAAATTC--T-TGTGATACGGTTTTCGACGTTACTGGAAAAGTACGGGTTCGGTTTTTTGTCAT-TGATTGCTACGGTATTCGATACTCTTTAA-GGAATTGT
gi|12 : gtggataggcctatattgtgaTTATGTTTCTGACCGAAACGGTACTCGCTC--TCA----GATTTTCAACCGAGTAAT---ACGG-ATATCGACCGATA-GATAC-------------T---GTC------TTTGACAGG-C-GAA-TTTCATTTTGATTACTGACTTTAACAGTT--------TTATTGTT-CCTGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAAAATAA-GTT---------CA-AATTGC--ATATATAAAATGTATATGAATTAT------GT-------------------A---------------GG--TAC---TGT-T-T-T-A-ATG---T---TTTATGGCGTGTGTCT--GT----TGTTATTG-C--A----TA------TTCA-ACGGCGAACA------CTAGT---GAAATAGCAAAAACTT-CATTTTCATCAAGAAAATTTG-AT--TT-A--TTGA-----GA--AAAAGAGAGA-AATTA-AATGA-T-GAATACATAATAT-TTTAATGAATTTCGC-ATAA-A-ACATTTG-AATAT---CAATGCAACAGT---------T---------TC----------A---AT------AT----AT
gi|13 : gatataccaatattgctatAT--TT-A--TTGT-----TA--AGAAATCAGA-AATTA-AATAT-T-TAATACAATGCAT-TTTAATGTATTTCGC-ATCA-A-ACATTTG-AATAA---CAATGCAATAATATA------T---------TG---------TA---AT------GA----TTAT---TTC--C-TGTGATACGGTATTCGACGTTATAAGAAAATGGCCGGTACGA-TTTTCGTCAT-TGATTGATACGGCATTCGATACTTATTCA-AGAATTGTATTCACATTTCGTT-AATTAAAAAAA-TA-TTGT-GCATATT-GTAT-ATGAC-TCTTT-AATG-ATCGATTT--AAGACATTTTCACATTAAA-TAATACC-TGTTGTATTACTTAAACTGCCATATC---TACTTACCATGCAGATA---TATCTTCCAAC--AGTGCATTGTG--ACTTATtcga
gi|14 : g-TGTGATACAGTTTTCGACGTTGTTGGAAAATGACCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTTGATACTCATTCA-GAAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GTGTAAT-ATCT-ATGAA-TC--------------TTTA-AAGACGTTTTCACATTATA-TTATACA-TTTTGTAATACTTAAACTGCAATATC---TACTTATCATGC--ACA--GTGTCATGTAACTAAGT-CAC--TA--GCATGCA------G---ATATCTCTTCAAACAGTGCATttgttcttcaatcacaatcatatagtatcgga
gi|15 : TTATGTGTTTGACCGAGGCGGTACTCGCTC--TCA----GGTTTTTGACTGAGTTAA---ACGGTAT-TCGACCGAGG-GGTACATTTTAAAAAGGGT---GTCACCTGTTTTGATGTA-T-ATG-TTTCGTTAAGG----TGATTT-----GTC--------ATATTTTT-TTTAAAAGTAAATAAT-------AGATAT---CGA--TAT-tgcgacttgtgtgttcttcaaacataattacgttgtatcggagtatg
gi|16 : tgattgtgcttttatggcttatataatgtcatgttccaacgaaagttgcatttccggccgggacctcgattaattaccaaatataattaccacagtgaataaaccaatattttcgatTTATGTTTTCGACCGTGACGGTACTCGCTC--TTAAGCCGGTTATCGACCGATTAAT---ACGATAT-TCGACCGAAA-GGTAT-------------T---GCC------TTCGACAGA-T-GCA-TTTCATCAGGGTTACTGACTTTAA-----------------------ATAAAA-TGAAC-AT-------GAATATACACGA--TAG-TAGTCACAA---GA-GTT---------TA-A----A--TTACATAAA---TTGA--------------AT------------------------------------G--TA------T-A-T-T-A-AT-------------------TA--T--GT----TTTTATTG-T--A----TA------TTTA-ACGACCAACA------CTAGT---ATAATTGCAAAAACTT-CGTTTTgatccagcgaatataagttc
gi|17 : atataccaatattgcgaTTATGTTTTCGACCGAGTCGGTACTCGCAC--TCA----AGTTTTCGACCGAGTTGT---ACGCTAT-TCGATCGAGA-TGTAC-------------T---GTC------TTTGCCGGA-C-GCA-TTTTATCAGGGCTAACGACTTTG--------------------TT-CATGAGA-TAAAT-AT-------GAATATACACGA--TAT-TAGACACAC---AA-TTT---------TT-A----A--ACACATAGA---TAGA--------------AT------------------------------------G--TA----TAT-GAC-T-T-ATG---TAGGT-------ATGTA--T--GT----TCTTATTG-T--A----TA------TTTA-ACAACGAATA------TTAGTAAAGGAATTGC-AAAACTT-TGTTTTCAagttttagtatttattttaaag
gi|18 : tgcatataccagctttgtgct--T--GC----TGTTATTG-CTAA----TA------TGTACAC------TA------CTGGT---GGGCGTTCAAAAACTG-AGTTTTTGTCAATAAAATGT---T--GT-AAGTTGT------A--AACATTTAGATAAGTA-AATGT-TATAATA------AT-T--AATGCATTTCGC-ATAA-ACACTTTTG-AATAA---CGATGCAATAAT---------T---------TC----------A---AT------AT----A------TTC--G-T-TTATATAGTTTTaa
gi|19 : tgctatAT-TAATTACAT---AA-ATA---------TA-A----T--GTATACGAA---TTAT--------------GC-------------------C---------------GG--TGC---TGT-G-T-T-T-AT-------------------CG--T--GT----TGTTATTGAT--ACTCGTA------TTTA-ACAACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAGGAATATGTG-AT--TT-A--TTG------TA--AAAAATCAGA-AATTA-AATGA-A-TAATTCAATGTAT-TCCAATGTATTTCGT-ATAA-A-A----TGCAATAGTTTCAATATAA-----------------------TC---------GA---AT------GT----A-AT---TTT--CGTGTGATATCGTTTTCGGCGTTATTGGAaatgagactgtattcggagcaaagtcccggcatcaaaacgtatatacacaaatgcaatacttaattggaagactatttcacatcacattggt
gi|2 : gc-GTT---------TA-G----T--ATACATAAA---TATA--------------ATGTATATGCATTATAT----A---------------GG--TAC---TGT-T-T-T---ATG---T---T-------GTCTG--TCCGT----TGTTATTG-T--A----CT------TTTA-ACACCGAACA------CTAGT---AGAATTG-AAAA
gi|2 : -A--TTG-------A--AAATATCAGA-AATTA-AATGT-T-TAATACAACGT-T-TTTATTGTATTTTGA-ATAA-A-CCAATTG-AATAA---CAATGCAATAGT---------TATAATATATTC---------GA---AT------AT----ATAT---TTC--C-GATGTTACGGTTTTCGACGTTGTTGAAAAATGGACGGTACGG-TTTTCGCCAT-TGATTGATACGGTTTTCGATGCTCATCCA-GAATTTGTATATACATTCTGTT-ATTGAATAAAA-TGTATTT-GCGTAAT-ATCT-AAGAA-TTTTT-AATG-ATCTATTTA-AAAATGTTTTCACAT-ATA-TAATACA-TTTTGAAATACTTAAACTGCTATCCCGCTTTCTTAC-ATGTTGC----CTGTCT-CAAA----ATGCAT------------AAT----G---ATAT------AAATAATGCATGGAATATAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGTATTTTCTCATATCAGTTGATTTATACTTCTATTCATGTATAAACATTTGTAAAAAGTAAACGTCATAATCTTGT-----------------------GCGTGTTACACAGGAGTGTGTCAGCCTCCGATATTAATAATTTAATATCTACACTTGTGCACAAACATACTAATTCGAGCTCATAAAGCAGAGAAGGTATTTATTATTATTTAAATTATTGCAATTTATTCTATTTTTATAAAATTAATGTCG--AATGCTTGTTAATGAAATTTAAATACTCTTTTGAAG-CTAGTTAATCTTTGATTGGATTGTGT-AC-GTATATGAATATTGTCGTTTT-------AAA-AGTAGATGATAACAGTACATATCCTGTATACGTTATCAAATGAGAATTAAGAAGTGATAGATCTATCATCACATGGGATGAAGCATCGATGACAAGTTCAGTTTTTACAAGTTTCCTATATTTAATTGTATAACTGGGGACATCGAAAGCAATTA----TTTTtatcagaaattaaatgtttaatacaacgtttttattgtattttgaataaaccaattgaataacaatgcaatagttataatatattcgaatatatatttccgatgttacggttttcgacgttgttgaaaaatggacggtacggttttcgccattgattgatacggttttcgatgctcatccagaatttgtatatacattctgttattgaataaaatgtatttgcgtaatatctaagaatttttaatgatctatttaaaaatgttttcacatatataatacattttgaaatacttaaactgctatcccgctttcttacatgttgcctgtctcaaaatgcataatgatataaataatgcatggaatataatttgcatctcattttcgtagtcagtgttgtattttctcatatcagttgatttatacttctattcatgtataaacatttgtaaaaagtaaacgtcataatcttgtgcgtgttacacaggagtgtgtcagcctccgatattaataatttaatatctacacttgtgcacaaacatactaattcgagctcataaagcagagaaggtatttattattatttaaattattgcaatttattctatttttataaaattaatgtcgaatgcttgttaatgaaatttaaatactcttttgaagctagttaatctttgattggattgtgtacgtatatgaatattgtcgttttaaaagtagatgataacagtacatatcctgtatacgttatcaaatgagaattaagaagtgatagatctatcatcacatgggatgaagcatcgatgacaagttcagtttttacaagtttcctatatttaattgtataactggggacatcgaaagcaattatttt
gi|20 : gtttagtatacataaatataatgtatatgcattatataggtactgttttatgttgtctgtccgttgttattgtacttttaacaccgaacactagtagaTTTTTGAGTACACTTCAT-TTTAACCTTGCTATGCCGCTGTATATGAATATTGTCGTTTT-ACTACAAAA-AGTAGACGATTTCAGTACATATCCTGTGTATGTCATCGAATGAGAACTAAAAAGTGATAGATCTATCATCACGTCTGATGAAGCCTCGATGACAA----------------TTTCACATATTTAACTGAATAACTGGGGACATCGTAAGCAATTA------TTTTAGATC
gi|21 : TT-AATGAATAAAA-TGTTTTTTGCGTAAC-ATCT----------TT-G--G-ATC--TTTA-AAGGCGTTTTCACATTATA-TTAAACA-TATTGTA----TTAAACTTCCATATC---AACCTACCATGCAGATA-----TATT-------AGTGCAT--TGTAACTTGTttttt
gi|22 : AT--TA-A--TTGT-----TA--AAAA-TAAAA-AAATA-AACGT-T-TAATACAATGTAT-TGTATTGTTTTTCTC-ATAG-A-ACATTTG-AATAA---CAATTCAATAGT---------T---------TCAATATATT-GG---ATTG----GT----ATAT---TTT--A-CATGATATAATATCGGATGTTATTGGAAAATGGACAGAATGG-TTTTCGTCACATGATTTATGCGGTATTCGATACTCATgtgtttgttattcaatcataatcataataatagtatcgaagcatgtccgtgcgtctgtccgtccgatattgtccgtgta
gi|23 : gATGTAATA-----------T---------TC---------GA---AT------AT----ATAT---TTC--C-TATGATACGGTATTCGACGTTATTTGAAAATGGACGGCACGG-GTTTCGTCAT-TGACTGATACGGTATCCGATACTCATC------------TTTACAATTTGTT-GATGAGTAAAA-TGTATTT-GCTTAAT-cattata
gi|24 : catagaattgtgatatttTTATGATTTCGACCGAGACGGTTCTCGCTC--TCA----GGTTTTCGACAGAGTAAT---ACGGTAT-TCGTAAGAGA-GGTAT-------------T---GTC------TTCGGCAGA-C-ACT-TTTCATAAAAGTAAGAGACTTTGAGGGTA--------TTATTTTC-CATGAAA-TAAAT-AT-------GAAAATACACGA--TAT-TAGTCGCAA---gattattgaatactcaactgtagcatctcctaatattaa
gi|26 : tatataccagaactgcgat-CATG----TAAAT-AC-------GAATATACACAA--TAA-TAGTCACAA---AA-GTT---------TA-A----A--TTACATCAA---TAAA--------------ATGCATATGAATTATGT----A---------------GG--TTC---TGA-T-T-A---ATG---G---T-------GTGTG--TCTGG----TGTTATTG-T--A----TA------TTTA-ACAATGAAC
gi|3 : acagttttcgctactataTTATGTTCTCGACCGAGACGGTACTCGCTT--TCA----GGGTTTCGACCAAGTGATGATACGATAT-TTGAGTAAGA-TGTAC-------------TACTGTC------TCCGACAGA-C-ACA-TTTTATCAGAATTATTGACTTTGAAGGTA--------CTATTTTT-CACGATA-AAAAT-AT-------GAATATACACGA--TAT-TTGTCACAA---ATTGTT---------TA-A-------ATACATAAA---TAGA--------------AT-------------------GTATATGAATGATGTGAG--TAC---TGT-G-T-T-T-GTGGGGT---T--------TGTA--T--GT----TGTAATTG-T--A----TA------ACTA-ACTACAAACA------TAAGT---GAAACTGCAAAAACTT-T----------------TGT-AAT--TT-A--TT-T-----TA--AAAAATCGGA-AATCG-AATGT-T-TAAAACAATGTAT-TGTTTTGTATTTCGC-ATAA-A-ACATTTG-AATTA---AAATGCAATAGTTTCAATATAT---------TC---------GA---AT------TC----ATAT---TTC--A-AATGATACGGTATAAGGCGTTATTGGAAAA-GGACGGAACGG-TTTTCGTCAT-TGATTGATATTACATTCGGTACTCA-TCATGGAATTGTACTTACATTTTGCT-GATGAGCAAAACTAAATTT-GCTTAATGATCA-T-GAA-TCTTT-AATG-GTCGATTT--AAGACGTTCCCACA-TATA-CAGTACA-TTTTGTAATCCTTAGACTGCCATATC---TACTTGTCATACACATA--C-ATCTTCAAAC--ATTGCAT--TGTAACCTATGATCTTCGACCACAT------AAATATAGTAT---CTGTTACTGGCATTGTTTTATAAATTCTTTGTC-GTTTTCCATTTGTTCATACCtag
gi|30 : tggatataccaatatgcgatTTATGTTATCGACCGATACGGTAGTCGCTC--Tgt
gi|4 : agtgtagataccaatattgcgatTATGTTTTCGACCGAGACGGTATACGCTC--TCA----GGTTTTCGACCGAGTAAT---ACGGTAT-TCTTTCGAGA-TGTAT-------------T---GTC------TTCGACAGA-C-GAA-TTTTATTAGGGTAAGTGTTTTTTAAGGTA---------TAATTTT-CATGAAA-TAAAT-AT-------GAAAATACACGA--TAT-TAGTCGCAA---AA-TTT---------TA-A----T--ATACGTAAA---TATA--------------AT------------------------------------G--TACAAATAT-G-CAT-T-ATA---T---A-------G---G--T--AC----TATTATT------------------TTT--ACACCGAACA------CTAGT---AGAATGGCAAAAACTTGCGTTTTCAT----GAAATGTT-AT--TA-A--TT-T-----TA--AAAAATCAGA-AATTA-AATGT-T-TAATACAATGT-T-ATTATTGTATTTTGC-ATAA-A-ACAATTG-AATGA---CAAGTCAATATTTTCTATATAT---------TC---------GA---AT------AT----GTTT---TTT--C-CATGATACGTTTTTCGACG---TTGAAAAATGGACGGTACGG-TTTTCGTTAT-TGATTGATACGATTTTCAATACTCATCCA-GGATTTGCATATACATTCTTTT-TATGAATAAAA-TGTTTTT-GCGTTAT-ATTTAA-GAA-TCTTT-AATG-TTC-GATTACAACATGTTTCCACA-TATA-TAATACA-TTTTGAAATACTTAAACTGCTAT-CC---TGCTT-TCATGCATGTAGCCTG-CCTCAG----AATGCAT--AG--ATTTATAAT----A---ATAT------AAATAGTGCATGCAATGTAATTTGCA---TCTTAT--TTTCGTAGTCAGTGTTGCATTTTCTTATATCA
gi|5 : atggatatacaaaaattgcgatgTTATGTT--CGACCGAGACGGTACTCGCTC--TCA----CGTTT-CGACTGAGTAAT---ACGATCT-TCGACAGAGA-GTTAC-------------T---GTC------TTCGACAGA-T-GCA-TTTAATAAGGGTTACTGGCTTCAAAAGTA--------TTATTTTT-CATCAAA-TAAAT-AT-------GAATATACACTA--TAT-TAGTAACAA---AA-ATT---------TA-A----T--TTACATAAA---TATAGTGTATATGCATATGT-------------------A---------------TG--TAC---CAT-T-T-T-T-ATG---T---T-------GTGTGTCT--GT----TGTTATTG-T--A----TA------TTTA-ACGACGAACACATAGTCTAGT---GGAATTGTAAAAACTT-C-----------GAAAAC-TAAA----------TGT-----TA--AA------------TACAATG------------TGT---TTGAATGAATTTCGC-ATAA-A-ACATTCG-AAAAA---CATTGCAATAGT---------TTCAATACAGTC---------AA---AT------GT----AAGT---TTT--C-TGTGATACGGTTTTCGACATAAGTAGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTTTTCGATTCTCATTCA-GGAATTGTATTTATATTTTGTA-AGTGAATAAAA-TGTTTTT-GCGTAAT-ATC--------------AATGAATC--TTTA-AATACGTTTTTACATTATA-TAATACA-TCTTGTATTACTTAAACTGCCATACC---GACTTACCATGCAGATA---TGTCTTCAAAC--AAT-CATTGTG--ACTTATA
gi|6 : tgatatacaaacattacgat---ACGTTAT-TCAAGCGAGA-TA-AC-------------T---GTC------TTCGACAGA-C-GCA-TTTTATCAGGGCTACTGACATTAAAGGTA--------TTATTTTT-CATGAAA-TGACT-ATCGCAAAAGAATGTATATGAATTATGTAGTTACT-------GTT---------TT-A----TGNNNNNNNNNN---NNNN--------------NN-------------------N---------------NN--NNN---NNN-N-N-N-N-NNN---N---N-------NNNNN--N--NN----TGTTATTG-T--A----TA------TTTA-ACGACGAACA------ATAGT---G------CAAAAACTT-CGTTTTCATCAAGAAAATGTTT-T--TT-A--TTGT-----AA--ATAAA--AGA-AGTTG-AATGT-T-TAATACAATGTAT-TTTAATGTATTTCAC-ATAA-A-ACGTTTG-AAAAAA--CAATGCAGTGGT---------T---------TCAATATAATCGA---AT------GT----AAAT---TTTTTC-TGTGATACGGTTTTCGATGTTATTGTAAAATGGCCGGTACGG-CTTTCGTTAT-TGATTGATACGGTATTTGATATTCATTTA-GAAATTGTATTTTCATTTTGTT-AGTAAATAAAA-TGATTTT-GCGTTAT-ATCT-A---------T-GA---ATC-A-TTA-AAGACGTTTTCACATTATATTAAT-TATTTTTGTATTACTTAAACTGCCATATC---TACTTACCATGCAGATA--C-ATATTCAAAC--AGTGCATTGTG--ACTTGTtgttcttcacaatcataataaattcttatatttccgtgcgcgagtccatccgatcatgtccgttcgagaactttctcacacgt
gi|7 : GTTT-TCGACCGAGATGGAAC-------------G---G-----------AACAGAACAGAA-TTTTATCAGGGTTAATGACTTTAAAGGTA--------TTATTTTTTCATAAAA-TAATT-AC-------GAATATACA--A--TAT-TAGTCATAA---AA-GTT---------TA-AATTAC--ATACACAAC---TGTAT-------------AT-------------------G---------------GA--TAA---TGTAT-G-T-T-ATG---T---TTTATG--GTGTT--T--GTCTTTTGTTATTG-T--A----TA------TTTA-ACGACGAATA------TAAGT---GGAATTGCAACATCTT-CGTTTTCATTAAGAAAATCTTA-T--TT-A--TTGT-----CA--AAAAATCACA-AATTT-AATAT-T-AAATACAATGTTT-TTTATTGTATTTCGC-GTAA-A-ACATTTG-AATAA---CAATGCAATAGT---------T---------TCAATATATTCGA---AT------GT----AAAT---T-------GTGACACGATTTCCGACGTTATTGAAAAGTGGCCGGTACTG-TTTTTGTCAT-TGATTGATACGGTAATCGATACTCATTCC-GGAATTGTATTTAC---------------TAAAA-TGTTTTC-GAGAAAT-ATCT-A-------------TG-A-------A-ATGACATTTTCACATTATA-TAATACA-TGCTGTATAACTTAAGCTGCCATATC---TATTTACCATACAGATA---TATCTTCAAAC--AGGGCAT--TG--gtgttcctcaatcacaatcatatagtatcggagaagcccgtgcgtcagtccatccgatcttctctgttctatgactttctcacacata
gi|8 : atattgcgatttatTTATGTTTTCGACCTAGACGGTACCTGCTAGATCA----GGTTTTTGACCGAGTAAT---ACAGTAT-TCGACCGAGA-GATAC-------------T---GTC------TTCGACAGA-C-GCA-TTTGAT-------ATT-ACTTTAAACATT--------TTATTTTT-CATGAAA-TAAAA-AT-------TAATATACACAA--TAT-AAGTCAAAA---AA-GTT---------TA-A----A--ATACATCAA---TAGA--------------ATGTATATGAATTATGT----A---------------GG--TAC---TGT-T-T-T-T-ATG---G---T-------GTATG--TTTGT----TGTTATTG-T--A----TACCAGTTTTTA-ACGAAGAACA------ATTGT---GGAATTGCAAAATCTT-CGTTTTCAT---AAAAATAAGA-T--TT-A--TTGT-----TACAAAAAGTCTGA-CATTA-ACTGT-T-CAATAAAATGTAT-TTTAATGTATTT-----TAATA-GCATT---GCTAA---TGTTTCAATATA---------T---------TC---------AA---AG------GG----AAAT---TTC--C-TGTGATACGGTTTTCGTCGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGATATTCGATATTCATTCA-CAAATTGTATTTTTATTTTTTTCAATGAATAACC-TA-TTTT-GCGTAAC-ATAT-ATGAG-TCTTTAAAGG-ATC-ATATA-----------TACATTATA-AAATAtgccttgtgttcttcaatcacaagcatatagtaccggag
gi|9 : atgaatattgtgatTTATGTTTTTGACCGAGACTGTACTCGCTT--TCA----GGTTTTTGAC----------------------A--GAGA-GATAC-------------T---GTC------TTTGACAGA-C-GCA-TTTTATCAGGGTTACCGACTT--AAGGTATTATTTTTTTATTTTT-CATACAA-TACAC-AC-------GAATATACACAA--TAT-TAGTCATAA---AA-GTTACATAAATATA-A----T--GTATATCGA---TGAATTAT----------GT-------------------A---------------GG--TTT---TGT-T-T-T-T-ATG---G---T-------GTGTGTCT--GT----TGTTATT-------------------------GACAAACT------CTAGT---GGAATTGCAAAAA-----------------AAAATCAGAAC--TTGA--GTGT-----T-----AAAT-------TT---ATGTAT-TGATA-----TAT-TTTAATGTCTTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGTTTAATTATAT---------TA---------GA---AT------GT----ATAT---TTC--C-TACGATATGGTTTTCAAAGTTATTGGAAAATGGCCGGTATGG-TTTCCG---T-TG-TTGATACGGTATACGATACTCATTCA-GGAA------------TTTGTT-AATGAACAAAA-TATTTTT-GAGTAAT-ACCT-ATGAA-TC--------------TTTA-AAGATGTATTCAGATTTTA-TAATACA-TTTTGTATTACTT-AACTGCCATTTC---TACATATCATGCAGACA---TATCTTCAAAT--AGTgtgatttt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TAGACTGACTGGTGCTATAACAACCAATCATCAAACAGTGTAGACTGACTGGTGCTATAACCTAGTATGTTCTTCAAGCACAATCATACTGTATCTGTTATTGGCCTAGTTTAACAAATTCTGCGTCGTATTTCATTTGGCTCTCCCGTCA
Unaligned ( gi|27 ): TTGTTTCATGCTCTTGCGGGGGTCTTATCTTGTGTTTACGTTCTCGTAATCTACACTTCTCATCGCCTCTATTTGTGACTATGTAATAGGTGGTAAGGTCA
Unaligned ( gi|28 ): TGTGTCTTGTATGGCTTATTATGTTTGGTCCCAACAAAAGATGCATTTCCGGTTGAATTCTTGATTTATTAGCAAATATCATT
Unaligned ( gi|29 ): TCAATGATTTTTAATTTTAACAGAGTCATGGGCTTTCTTAAGAAATGATAAGTATT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 1111111111111 111111111 1111111 222222222222222222222222222222222222222222222222222 2222222222222222222222222 222 5555555555555555555555555555555 111111 66666666666666666666666 2222 111 222222 22222222 222222 111 11 77777777777777777777777 333333 1 11 1 1 11 4444444 1 33 33333
lowQualScore : 44 7777 555 2 0 2 4444444444444 444 777777 2 2 2 0 1 1 2 1 999999999 2 2 2 8888888 33 2 444 2 000000000 2 8888888 444 1 111111111111111111111111111111111111111111111111111 33 444 555 2 666 4444444444444444444444444 5555 2 33 5555 666666 2 0 777777 444 2 888 0 111 33 2 33 999999 33 0 2 2 2 2 0 3 2 0 2 2 2 2 666 1 6666666666666666666666666666666 666 000000 5555 5 444 33 2 2 2 2 2 2 1 2 2 77777777777777777777777 3 3 3 4 4 666 7777 000 555555 0 44444444 333333 77 777 33 3 1 1 66666666666666666666666 22 1 1 000000 1 1 5 88 1 3 6 3 44 9999999 3 0 0 0 0 44 3 55555
lowQualScore : .. .... ... . . . ............. ... ...... . . . . . . . . ......... . . . ....... .. . ... . ......... . ....... ... . ................................................... .. ... ... . ... ......................... .... . .. .... ...... . . ...... ... . ... . ... .. . .. ...... .. . . . . . . . . . . . . . ... . ............................... ... ...... .... . ... .. . . . . . . . . . ....................... . . . . . ... .... ... ...... . ........ ...... .. ... .. . . . ....................... .. . . ...... . . . .. . . . . .. ....... . . . . . .. . .....
lowQualScore : 22 1111 000 7 5 7 7777777777777 777 777777 7 7 7 1 5 1 1 1 999999999 5 5 5 1111111 44 4 444 5 000000000 5 1111111 444 0 222222222222222222222222222222222222222222222222222 44 444 888 5 000 6666666666666666666666666 0000 4 22 0000 888888 4 1 222222 444 7 222 8 555 77 5 44 111111 44 4 5 5 5 5 9 4 5 6 5 5 5 5 999 6 0000000000000000000000000000000 555 000000 0000 3 444 44 4 7 7 9 9 9 7 9 9 22222222222222222222222 1 1 3 5 5 444 1111 111 222222 8 22222222 000000 00 555 88 2 0 0 55555555555555555555555 00 0 0 000000 0 0 5 55 0 3 7 3 00 0000000 3 7 7 7 7 00 7 77777
consensus : GTTATGTTTTCGACCGAGACGGTACTCGCTC--TCA----GGTTTTCGACCGAGTAAT---ACGGTAT-TCGACCGAGA-GGTAC-------------T---GTC------TTCGACAGA-C-GCA-TTTTATCAGGGTTACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAA---AA-GTT---------TA-A----T--ATACATAAA---TANA--------------AT-------------------A---------------GG--TAC---TGT-T-T-T-T-ATG---T---T-------GTGTG--T--GT----TGTTATTG-T--A----TA------TTTA-ACGACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAAGAAAATGTGAAT--TT-A--TTGT-----TA--AAAAATCAGA-AATTA-AATGT-T-TAATACAATGTAT-TTTAATGTATTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGT---------T---------TC---------GA---AT------GT----ATAT---TTC--C-TGTGATACGGTTTTCGACGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCGATACTCATTCA-GGAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GCGTAAT-ATCT-A-GAA-TCTTT-AATG-ATC-ATTTA-AAGACGTTTTCACATTATA-TAATACA-TTTTGTANTACTTAAACTGCCATATC---TACTTACCATGCAGATA--CTGTCTTCAAAC--AGTGCAT--TG--ACTTATAAT----G---ATAT------AAATAGTGCATGNAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTTTCTCATATCAGTTNATTTATACTTCTATTCATNTGTAAACATTTGTAAAAAGTAAACGTCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACANNGGAGTGTGTCAGCNTCCGATATTAATAATTTAATATCTACACTTGTNCACAAACATACTAATTCGGGCTCATAAAGCAGANAGGGTATTTATTATTATCTAAATTATTGCAATTTATTCTATTTNTATAAAATCAATGTCGAAAATGCTTGTTAATGAAATTNAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGT-ACTGTATATGAATATTGTCGTTTT-A-TA-GAAA-AGTAGACGATTTCAGTACATATCCTGTATACGTTATCGAACGAGAACTAAGAAGTGATAGATCTATCATCACGCGTGATGAAGCCTCGATGACAA-TTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGGGACATCGAAAGCAATTA----TTTTTTAGATC
Reference ( family-584 ) : GTTATGTTTTCGACCGAGACGGTACTCGCTC--TCA----GGTTTTCGACCGAGTAAT---ACGGTAT-TCGACCGAGA-GGTAC-------------T---GTC------TTCGACAGA-C-GCA-TTTTATCAGGGTTACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAA---AA-GTT---------TA-A----T--ATACATAAA---TANA--------------AT-------------------A---------------GG--TAC---TGT-T-T-T-T-ATG---T---T-------GTGTG--T--GT----TGTTATTG-T--A----TA------TTTA-ACGACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAAGAAAATGTGAAT--TT-A--TTGT-----TA--AAAAATCAGA-AATTA-AATGT-T-TAATACAATGTAT-TTTAATGTATTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGT---------T---------TC---------GA---AT------GT----ATAT---TTC--C-TGTGATACGGTTTTCGACGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCGATACTCATTCA-GGAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GCGTAAT-ATCT-A-GAA-TCTTT-AATG-ATC-ATTTA-AAGACGTTTTCACATTATA-TAATACA-TTTTGTANTACTTAAACTGCCATATC---TACTTACCATGCAGATA--CTGTCTTCAAAC--AGTGCAT--TG--ACTTATAAT----G---ATAT------AAATAGTGCATGNAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTTTCTCATATCAGTTNATTTATACTTCTATTCATNTGTAAACATTTGTAAAAAGTAAACGTCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACANNGGAGTGTGTCAGCNTCCGATATTAATAATTTAATATCTACACTTGTNCACAAACATACTAATTCGGGCTCATAAAGCAGANAGGGTATTTATTATTATCTAAATTATTGCAATTTATTCTATTTNTATAAAATCAATGTCGAAAATGCTTGTTAATGAAATTNAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGT-ACTGTATATGAATATTGTCGTTTT-A-TA-GAAA-AGTAGACGATTTCAGTACATATCCTGTATACGTTATCGAACGAGAACTAAGAAGTGATAGATCTATCATCACGCGTGATGAAGCCTCGATGACAA-TTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGGGACATCGAAAGCAATTA----TTTTTTAGATC
gi|1 : TTATGTTTTCGACCGAG
gi|1 : gtcacttccgaacgctgatatacccgaactgtgatGTTTTCGACCGAGTAAT---ACGGTAT-TCGTCCGAGA-GATAC-------------T---GTC------TTCGACAGA-C-GGAATTTTA-AAGGGTAAGTAACTTTGAAGGTA--------TTATTTTT-CATGAAA-TAAAT-GT-------GAAAATACACGA--TAT-ACGTCGCAA---AA-ATT---------TG-A----T--AAACATAAA---TATA--------------AT-------------------A---------------GG--TAC---AGA-T-T-T-T-ATG---T---T-------GTCTG--C--GT----TGTTATTG-T--A----T-------TTTA-ACACCGAACA------CTAGT---AGAATTGCAAAAACTG-CGTTTTTATCAAGTAAATGTAAACAGTT-A--TTGCCTTTCTA--CAAAATCAGA-AATTA-AATGT-T-TGATAGAATGTTTGTTT--TGTATTTTGC-ATAA-A-ACAATTG-AATAA---CAATACA--------------T---------TC---------AA---AA------AT----ACAT---TTC--C-TATGATTCGATGTTGGACGTTGTTTAAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCAATACTCATCCA-GGATTTGTGTATACATTCTGTT-GATGAATAAAA-TGTATTC-GCGTAAT-ATTT-A-AAAATTCTT-AATG-ATCGATTTA-AAAATGTTTCCACAT-ATA-TAATACA-TTTTGAAATACTTATACTGCTAT-CC---CGCTTTCT-TGCATATAGCCTGTCT-CAGA----GTGCAT--AC--ATTTATAAT----G---ATAC------AAACAGTGTGTGAAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTGTCTCATATCAGTTTATTTATATTTCTATTCATTTGTAAACATTTGTAAAAAATAAACATCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACAGTGGAGTATATCAGCATCCGATATTAATAATTTAATATCTACACTTATTCACAAAC------ATTCGGGCTCATAAAGCAGACAGGGTATTTATTATTATCTAAATTATTGCAATTTATTTTATTTATATAAAATC-ATGTCGAAAATGCTTATTAATGAAATTAAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGT-ACT-TGTATGAATATTGTTGTTTTAA-TA-GGAATAGTAGATGATTTCAGTACATATCCTGTATATGTTACCGAACGAGAACTAAGAAGTGATAGATCTATCATCATGCGTGATAAAGCCTTAATGACAATTTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGTGACACCGAAAGCAATTACTAGTTTTTTAGATCtaatacggtattcgtccgagagatactgtcttcgacagacggaattttaaagggtaagtaactttgaaggtattatttttcatgaaataaatgtgaaaatacacgatatacgtcgcaaaaatttgataaacataaatataataggtacagattttatgttgtctgcgttgttattgtattttaacaccgaacactagtagaattgcaaaaactgcgtttttatcaagtaaatgtaaacagttattgcctttctacaaaatcagaaattaaatgtttgatagaatgtttgttttgtattttgcataaaacaattgaataacaatacattcaaaaatacatttcctatgattcgatgttggacgttgtttaaaaatggccggtacggttttcgtcattgattgatacggtattcaatactcatccaggatttgtgtatacattctgttgatgaataaaatgtattcgcgtaatatttaaaaattcttaatgatcgatttaaaaatgtttccacatatataatacattttgaaatacttatactgctatcccgctttcttgcatatagcctgtctcagagtgcatacatttataatgatacaaacagtgtgtgaaatgtaatttgcatctcattttcgtagtcagtgttgcattgtctcatatcagtttatttatatttctattcatttgtaaacatttgtaaaaaataaacatcataatcttgtgcagttagccccgaaatgataaagcgtgttacagtggagtatatcagcatccgatattaataatttaatatctacacttattcacaaacattcgggctcataaagcagacagggtatttattattatctaaattattgcaatttattttatttatataaaatcatgtcgaaaatgcttattaatgaaattaagatactcttttggagatagttaatctttgatttgattatgtacttgtatgaatattgttgttttaataggaatagtagatgatttcagtacatatcctgtatatgttaccgaacgagaactaagaagtgatagatctatcatcatgcgtgataaagccttaatgacaatttcagttttcacaagtttcacatatttaactgtataactggtgacaccgaaagcaattactagttttttagatc
gi|10 : gtcacttccgaacgctgatatacccgaactgtgatttatACTGTACATGCCC--TCA----TGTTTTCGACCAAGTAAT---ACGGTAT-TCGACCGAGC-GATAC-------------T---GTT------ATCGACAGA-C-GCT-TTTTATCAGGGTAACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACAG--CAG-TAGTCGCAA---AA-GTT---------TA-A----A--TTAGATTAA---TAGA--------------ATGCATACGAATTATGT----A---------------GG--TTC---TGT-G-T-TATGATG---G---T-------GTGTG--TCTGT----TGTTATTG-T--A----TA------TTTA-ACGACAAACT------CAAGG---GGAACTGCAAAAACTT-CGTTGTCATAAAGAAAATGTGA-T--TT-A--TTGT-----AA--AAAAATCATA-ACTTA-AACGT-T-AAATACAATGTAT-TTTAATGTATTTCGC-ATAA-A-ACAATTG-AATAA---CAATGCAATAAT---------T---------TC---------GATATATTCGAAGGT----AAAT---TTT--C-TGTGATACCGTTT-CGACGTTATTGGAAATTGGCCTGTAAGG-TTTTCGTCAT-TGATCGATTGGGTATTCGAT---------------TGTATTTACATTTTGTT-AATGAATAAAA-TGTTTAT-GCGTAAT-ATCT--------------ATGCAT--ATTTA-AAGATGTTTTCACATCATA-TAATACA-TTTTGTA
gi|11 : ggtataccaaaattgcgttttttGTTACCTTTTCGACCGAGACG-TACTCGCTT--TCA----GGTTTTCGACCGAG--AT----CGGCAT-GCGACCGAGA-TGTAT-------------T---GTT------TTCGACAGG-C-GCA-TTTAATCAGGGTTACTGACTTTAAGGGTA--------TTATTTTT-CATGAAA-TA-----T-------AAGTATACACAA--TAC-TAGTAACAA---AA-GTT---------TGGA----T--A-ACATAAA---TAAA--------------ATTTATACGAATTATACTGGCA---------------GGCCTAC---TGT-T-T-T-T-ATGGC-T---T-------GTGTC--T--GT----TGTTATTG-T--A----TA------TTTA-ACGGCGAACA------CTAGT---AGAATTGCAAAAGCTT-CGTTTTCAACAAG-AAATGTG-AT--GT-G--TTGT-----AA--AGAAATCAGA-AATTA-AATGT-C-AAATACAACGTAT-TTTGATGTATTTCGCAAAAA-A-ACATTTG-AATAA---CATTGCAATAGT---------T---------TC---------AAT--AT------ATTCGAATATAAATTC--T-TGTGATACGGTTTTCGACGTTACTGGAAAAGTACGGGTTCGGTTTTTTGTCAT-TGATTGCTACGGTATTCGATACTCTTTAA-GGAATTGT
gi|12 : gtggataggcctatattgtgaTTATGTTTCTGACCGAAACGGTACTCGCTC--TCA----GATTTTCAACCGAGTAAT---ACGG-ATATCGACCGATA-GATAC-------------T---GTC------TTTGACAGG-C-GAA-TTTCATTTTGATTACTGACTTTAACAGTT--------TTATTGTT-CCTGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAAAATAA-GTT---------CA-AATTGC--ATATATAAAATGTATATGAATTAT------GT-------------------A---------------GG--TAC---TGT-T-T-T-A-ATG---T---TTTATGGCGTGTGTCT--GT----TGTTATTG-C--A----TA------TTCA-ACGGCGAACA------CTAGT---GAAATAGCAAAAACTT-CATTTTCATCAAGAAAATTTG-AT--TT-A--TTGA-----GA--AAAAGAGAGA-AATTA-AATGA-T-GAATACATAATAT-TTTAATGAATTTCGC-ATAA-A-ACATTTG-AATAT---CAATGCAACAGT---------T---------TC----------A---AT------AT----AT
gi|13 : gatataccaatattgctatAT--TT-A--TTGT-----TA--AGAAATCAGA-AATTA-AATAT-T-TAATACAATGCAT-TTTAATGTATTTCGC-ATCA-A-ACATTTG-AATAA---CAATGCAATAATATA------T---------TG---------TA---AT------GA----TTAT---TTC--C-TGTGATACGGTATTCGACGTTATAAGAAAATGGCCGGTACGA-TTTTCGTCAT-TGATTGATACGGCATTCGATACTTATTCA-AGAATTGTATTCACATTTCGTT-AATTAAAAAAA-TA-TTGT-GCATATT-GTAT-ATGAC-TCTTT-AATG-ATCGATTT--AAGACATTTTCACATTAAA-TAATACC-TGTTGTATTACTTAAACTGCCATATC---TACTTACCATGCAGATA---TATCTTCCAAC--AGTGCATTGTG--ACTTATtcga
gi|14 : g-TGTGATACAGTTTTCGACGTTGTTGGAAAATGACCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTTGATACTCATTCA-GAAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GTGTAAT-ATCT-ATGAA-TC--------------TTTA-AAGACGTTTTCACATTATA-TTATACA-TTTTGTAATACTTAAACTGCAATATC---TACTTATCATGC--ACA--GTGTCATGTAACTAAGT-CAC--TA--GCATGCA------G---ATATCTCTTCAAACAGTGCATttgttcttcaatcacaatcatatagtatcgga
gi|15 : TTATGTGTTTGACCGAGGCGGTACTCGCTC--TCA----GGTTTTTGACTGAGTTAA---ACGGTAT-TCGACCGAGG-GGTACATTTTAAAAAGGGT---GTCACCTGTTTTGATGTA-T-ATG-TTTCGTTAAGG----TGATTT-----GTC--------ATATTTTT-TTTAAAAGTAAATAAT-------AGATAT---CGA--TAT-tgcgacttgtgtgttcttcaaacataattacgttgtatcggagtatg
gi|16 : tgattgtgcttttatggcttatataatgtcatgttccaacgaaagttgcatttccggccgggacctcgattaattaccaaatataattaccacagtgaataaaccaatattttcgatTTATGTTTTCGACCGTGACGGTACTCGCTC--TTAAGCCGGTTATCGACCGATTAAT---ACGATAT-TCGACCGAAA-GGTAT-------------T---GCC------TTCGACAGA-T-GCA-TTTCATCAGGGTTACTGACTTTAA-----------------------ATAAAA-TGAAC-AT-------GAATATACACGA--TAG-TAGTCACAA---GA-GTT---------TA-A----A--TTACATAAA---TTGA--------------AT------------------------------------G--TA------T-A-T-T-A-AT-------------------TA--T--GT----TTTTATTG-T--A----TA------TTTA-ACGACCAACA------CTAGT---ATAATTGCAAAAACTT-CGTTTTgatccagcgaatataagttc
gi|17 : atataccaatattgcgaTTATGTTTTCGACCGAGTCGGTACTCGCAC--TCA----AGTTTTCGACCGAGTTGT---ACGCTAT-TCGATCGAGA-TGTAC-------------T---GTC------TTTGCCGGA-C-GCA-TTTTATCAGGGCTAACGACTTTG--------------------TT-CATGAGA-TAAAT-AT-------GAATATACACGA--TAT-TAGACACAC---AA-TTT---------TT-A----A--ACACATAGA---TAGA--------------AT------------------------------------G--TA----TAT-GAC-T-T-ATG---TAGGT-------ATGTA--T--GT----TCTTATTG-T--A----TA------TTTA-ACAACGAATA------TTAGTAAAGGAATTGC-AAAACTT-TGTTTTCAagttttagtatttattttaaag
gi|18 : tgcatataccagctttgtgct--T--GC----TGTTATTG-CTAA----TA------TGTACAC------TA------CTGGT---GGGCGTTCAAAAACTG-AGTTTTTGTCAATAAAATGT---T--GT-AAGTTGT------A--AACATTTAGATAAGTA-AATGT-TATAATA------AT-T--AATGCATTTCGC-ATAA-ACACTTTTG-AATAA---CGATGCAATAAT---------T---------TC----------A---AT------AT----A------TTC--G-T-TTATATAGTTTTaa
gi|19 : tgctatAT-TAATTACAT---AA-ATA---------TA-A----T--GTATACGAA---TTAT--------------GC-------------------C---------------GG--TGC---TGT-G-T-T-T-AT-------------------CG--T--GT----TGTTATTGAT--ACTCGTA------TTTA-ACAACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAGGAATATGTG-AT--TT-A--TTG------TA--AAAAATCAGA-AATTA-AATGA-A-TAATTCAATGTAT-TCCAATGTATTTCGT-ATAA-A-A----TGCAATAGTTTCAATATAA-----------------------TC---------GA---AT------GT----A-AT---TTT--CGTGTGATATCGTTTTCGGCGTTATTGGAaatgagactgtattcggagcaaagtcccggcatcaaaacgtatatacacaaatgcaatacttaattggaagactatttcacatcacattggt
gi|2 : gc-GTT---------TA-G----T--ATACATAAA---TATA--------------ATGTATATGCATTATAT----A---------------GG--TAC---TGT-T-T-T---ATG---T---T-------GTCTG--TCCGT----TGTTATTG-T--A----CT------TTTA-ACACCGAACA------CTAGT---AGAATTG-AAAA
gi|2 : -A--TTG-------A--AAATATCAGA-AATTA-AATGT-T-TAATACAACGT-T-TTTATTGTATTTTGA-ATAA-A-CCAATTG-AATAA---CAATGCAATAGT---------TATAATATATTC---------GA---AT------AT----ATAT---TTC--C-GATGTTACGGTTTTCGACGTTGTTGAAAAATGGACGGTACGG-TTTTCGCCAT-TGATTGATACGGTTTTCGATGCTCATCCA-GAATTTGTATATACATTCTGTT-ATTGAATAAAA-TGTATTT-GCGTAAT-ATCT-AAGAA-TTTTT-AATG-ATCTATTTA-AAAATGTTTTCACAT-ATA-TAATACA-TTTTGAAATACTTAAACTGCTATCCCGCTTTCTTAC-ATGTTGC----CTGTCT-CAAA----ATGCAT------------AAT----G---ATAT------AAATAATGCATGGAATATAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGTATTTTCTCATATCAGTTGATTTATACTTCTATTCATGTATAAACATTTGTAAAAAGTAAACGTCATAATCTTGT-----------------------GCGTGTTACACAGGAGTGTGTCAGCCTCCGATATTAATAATTTAATATCTACACTTGTGCACAAACATACTAATTCGAGCTCATAAAGCAGAGAAGGTATTTATTATTATTTAAATTATTGCAATTTATTCTATTTTTATAAAATTAATGTCG--AATGCTTGTTAATGAAATTTAAATACTCTTTTGAAG-CTAGTTAATCTTTGATTGGATTGTGT-AC-GTATATGAATATTGTCGTTTT-------AAA-AGTAGATGATAACAGTACATATCCTGTATACGTTATCAAATGAGAATTAAGAAGTGATAGATCTATCATCACATGGGATGAAGCATCGATGACAAGTTCAGTTTTTACAAGTTTCCTATATTTAATTGTATAACTGGGGACATCGAAAGCAATTA----TTTTtatcagaaattaaatgtttaatacaacgtttttattgtattttgaataaaccaattgaataacaatgcaatagttataatatattcgaatatatatttccgatgttacggttttcgacgttgttgaaaaatggacggtacggttttcgccattgattgatacggttttcgatgctcatccagaatttgtatatacattctgttattgaataaaatgtatttgcgtaatatctaagaatttttaatgatctatttaaaaatgttttcacatatataatacattttgaaatacttaaactgctatcccgctttcttacatgttgcctgtctcaaaatgcataatgatataaataatgcatggaatataatttgcatctcattttcgtagtcagtgttgtattttctcatatcagttgatttatacttctattcatgtataaacatttgtaaaaagtaaacgtcataatcttgtgcgtgttacacaggagtgtgtcagcctccgatattaataatttaatatctacacttgtgcacaaacatactaattcgagctcataaagcagagaaggtatttattattatttaaattattgcaatttattctatttttataaaattaatgtcgaatgcttgttaatgaaatttaaatactcttttgaagctagttaatctttgattggattgtgtacgtatatgaatattgtcgttttaaaagtagatgataacagtacatatcctgtatacgttatcaaatgagaattaagaagtgatagatctatcatcacatgggatgaagcatcgatgacaagttcagtttttacaagtttcctatatttaattgtataactggggacatcgaaagcaattatttt
gi|20 : gtttagtatacataaatataatgtatatgcattatataggtactgttttatgttgtctgtccgttgttattgtacttttaacaccgaacactagtagaTTTTTGAGTACACTTCAT-TTTAACCTTGCTATGCCGCTGTATATGAATATTGTCGTTTT-ACTACAAAA-AGTAGACGATTTCAGTACATATCCTGTGTATGTCATCGAATGAGAACTAAAAAGTGATAGATCTATCATCACGTCTGATGAAGCCTCGATGACAA----------------TTTCACATATTTAACTGAATAACTGGGGACATCGTAAGCAATTA------TTTTAGATC
gi|21 : TT-AATGAATAAAA-TGTTTTTTGCGTAAC-ATCT----------TT-G--G-ATC--TTTA-AAGGCGTTTTCACATTATA-TTAAACA-TATTGTA----TTAAACTTCCATATC---AACCTACCATGCAGATA-----TATT-------AGTGCAT--TGTAACTTGTttttt
gi|22 : AT--TA-A--TTGT-----TA--AAAA-TAAAA-AAATA-AACGT-T-TAATACAATGTAT-TGTATTGTTTTTCTC-ATAG-A-ACATTTG-AATAA---CAATTCAATAGT---------T---------TCAATATATT-GG---ATTG----GT----ATAT---TTT--A-CATGATATAATATCGGATGTTATTGGAAAATGGACAGAATGG-TTTTCGTCACATGATTTATGCGGTATTCGATACTCATgtgtttgttattcaatcataatcataataatagtatcgaagcatgtccgtgcgtctgtccgtccgatattgtccgtgta
gi|23 : gATGTAATA-----------T---------TC---------GA---AT------AT----ATAT---TTC--C-TATGATACGGTATTCGACGTTATTTGAAAATGGACGGCACGG-GTTTCGTCAT-TGACTGATACGGTATCCGATACTCATC------------TTTACAATTTGTT-GATGAGTAAAA-TGTATTT-GCTTAAT-cattata
gi|24 : catagaattgtgatatttTTATGATTTCGACCGAGACGGTTCTCGCTC--TCA----GGTTTTCGACAGAGTAAT---ACGGTAT-TCGTAAGAGA-GGTAT-------------T---GTC------TTCGGCAGA-C-ACT-TTTCATAAAAGTAAGAGACTTTGAGGGTA--------TTATTTTC-CATGAAA-TAAAT-AT-------GAAAATACACGA--TAT-TAGTCGCAA---gattattgaatactcaactgtagcatctcctaatattaa
gi|26 : tatataccagaactgcgat-CATG----TAAAT-AC-------GAATATACACAA--TAA-TAGTCACAA---AA-GTT---------TA-A----A--TTACATCAA---TAAA--------------ATGCATATGAATTATGT----A---------------GG--TTC---TGA-T-T-A---ATG---G---T-------GTGTG--TCTGG----TGTTATTG-T--A----TA------TTTA-ACAATGAAC
gi|3 : acagttttcgctactataTTATGTTCTCGACCGAGACGGTACTCGCTT--TCA----GGGTTTCGACCAAGTGATGATACGATAT-TTGAGTAAGA-TGTAC-------------TACTGTC------TCCGACAGA-C-ACA-TTTTATCAGAATTATTGACTTTGAAGGTA--------CTATTTTT-CACGATA-AAAAT-AT-------GAATATACACGA--TAT-TTGTCACAA---ATTGTT---------TA-A-------ATACATAAA---TAGA--------------AT-------------------GTATATGAATGATGTGAG--TAC---TGT-G-T-T-T-GTGGGGT---T--------TGTA--T--GT----TGTAATTG-T--A----TA------ACTA-ACTACAAACA------TAAGT---GAAACTGCAAAAACTT-T----------------TGT-AAT--TT-A--TT-T-----TA--AAAAATCGGA-AATCG-AATGT-T-TAAAACAATGTAT-TGTTTTGTATTTCGC-ATAA-A-ACATTTG-AATTA---AAATGCAATAGTTTCAATATAT---------TC---------GA---AT------TC----ATAT---TTC--A-AATGATACGGTATAAGGCGTTATTGGAAAA-GGACGGAACGG-TTTTCGTCAT-TGATTGATATTACATTCGGTACTCA-TCATGGAATTGTACTTACATTTTGCT-GATGAGCAAAACTAAATTT-GCTTAATGATCA-T-GAA-TCTTT-AATG-GTCGATTT--AAGACGTTCCCACA-TATA-CAGTACA-TTTTGTAATCCTTAGACTGCCATATC---TACTTGTCATACACATA--C-ATCTTCAAAC--ATTGCAT--TGTAACCTATGATCTTCGACCACAT------AAATATAGTAT---CTGTTACTGGCATTGTTTTATAAATTCTTTGTC-GTTTTCCATTTGTTCATACCtag
gi|30 : tggatataccaatatgcgatTTATGTTATCGACCGATACGGTAGTCGCTC--Tgt
gi|4 : agtgtagataccaatattgcgatTATGTTTTCGACCGAGACGGTATACGCTC--TCA----GGTTTTCGACCGAGTAAT---ACGGTAT-TCTTTCGAGA-TGTAT-------------T---GTC------TTCGACAGA-C-GAA-TTTTATTAGGGTAAGTGTTTTTTAAGGTA---------TAATTTT-CATGAAA-TAAAT-AT-------GAAAATACACGA--TAT-TAGTCGCAA---AA-TTT---------TA-A----T--ATACGTAAA---TATA--------------AT------------------------------------G--TACAAATAT-G-CAT-T-ATA---T---A-------G---G--T--AC----TATTATT------------------TTT--ACACCGAACA------CTAGT---AGAATGGCAAAAACTTGCGTTTTCAT----GAAATGTT-AT--TA-A--TT-T-----TA--AAAAATCAGA-AATTA-AATGT-T-TAATACAATGT-T-ATTATTGTATTTTGC-ATAA-A-ACAATTG-AATGA---CAAGTCAATATTTTCTATATAT---------TC---------GA---AT------AT----GTTT---TTT--C-CATGATACGTTTTTCGACG---TTGAAAAATGGACGGTACGG-TTTTCGTTAT-TGATTGATACGATTTTCAATACTCATCCA-GGATTTGCATATACATTCTTTT-TATGAATAAAA-TGTTTTT-GCGTTAT-ATTTAA-GAA-TCTTT-AATG-TTC-GATTACAACATGTTTCCACA-TATA-TAATACA-TTTTGAAATACTTAAACTGCTAT-CC---TGCTT-TCATGCATGTAGCCTG-CCTCAG----AATGCAT--AG--ATTTATAAT----A---ATAT------AAATAGTGCATGCAATGTAATTTGCA---TCTTAT--TTTCGTAGTCAGTGTTGCATTTTCTTATATCA
gi|5 : atggatatacaaaaattgcgatgTTATGTT--CGACCGAGACGGTACTCGCTC--TCA----CGTTT-CGACTGAGTAAT---ACGATCT-TCGACAGAGA-GTTAC-------------T---GTC------TTCGACAGA-T-GCA-TTTAATAAGGGTTACTGGCTTCAAAAGTA--------TTATTTTT-CATCAAA-TAAAT-AT-------GAATATACACTA--TAT-TAGTAACAA---AA-ATT---------TA-A----T--TTACATAAA---TATAGTGTATATGCATATGT-------------------A---------------TG--TAC---CAT-T-T-T-T-ATG---T---T-------GTGTGTCT--GT----TGTTATTG-T--A----TA------TTTA-ACGACGAACACATAGTCTAGT---GGAATTGTAAAAACTT-C-----------GAAAAC-TAAA----------TGT-----TA--AA------------TACAATG------------TGT---TTGAATGAATTTCGC-ATAA-A-ACATTCG-AAAAA---CATTGCAATAGT---------TTCAATACAGTC---------AA---AT------GT----AAGT---TTT--C-TGTGATACGGTTTTCGACATAAGTAGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTTTTCGATTCTCATTCA-GGAATTGTATTTATATTTTGTA-AGTGAATAAAA-TGTTTTT-GCGTAAT-ATC--------------AATGAATC--TTTA-AATACGTTTTTACATTATA-TAATACA-TCTTGTATTACTTAAACTGCCATACC---GACTTACCATGCAGATA---TGTCTTCAAAC--AAT-CATTGTG--ACTTATA
gi|6 : tgatatacaaacattacgat---ACGTTAT-TCAAGCGAGA-TA-AC-------------T---GTC------TTCGACAGA-C-GCA-TTTTATCAGGGCTACTGACATTAAAGGTA--------TTATTTTT-CATGAAA-TGACT-ATCGCAAAAGAATGTATATGAATTATGTAGTTACT-------GTT---------TT-A----TGNNNNNNNNNN---NNNN--------------NN-------------------N---------------NN--NNN---NNN-N-N-N-N-NNN---N---N-------NNNNN--N--NN----TGTTATTG-T--A----TA------TTTA-ACGACGAACA------ATAGT---G------CAAAAACTT-CGTTTTCATCAAGAAAATGTTT-T--TT-A--TTGT-----AA--ATAAA--AGA-AGTTG-AATGT-T-TAATACAATGTAT-TTTAATGTATTTCAC-ATAA-A-ACGTTTG-AAAAAA--CAATGCAGTGGT---------T---------TCAATATAATCGA---AT------GT----AAAT---TTTTTC-TGTGATACGGTTTTCGATGTTATTGTAAAATGGCCGGTACGG-CTTTCGTTAT-TGATTGATACGGTATTTGATATTCATTTA-GAAATTGTATTTTCATTTTGTT-AGTAAATAAAA-TGATTTT-GCGTTAT-ATCT-A---------T-GA---ATC-A-TTA-AAGACGTTTTCACATTATATTAAT-TATTTTTGTATTACTTAAACTGCCATATC---TACTTACCATGCAGATA--C-ATATTCAAAC--AGTGCATTGTG--ACTTGTtgttcttcacaatcataataaattcttatatttccgtgcgcgagtccatccgatcatgtccgttcgagaactttctcacacgt
gi|7 : GTTT-TCGACCGAGATGGAAC-------------G---G-----------AACAGAACAGAA-TTTTATCAGGGTTAATGACTTTAAAGGTA--------TTATTTTTTCATAAAA-TAATT-AC-------GAATATACA--A--TAT-TAGTCATAA---AA-GTT---------TA-AATTAC--ATACACAAC---TGTAT-------------AT-------------------G---------------GA--TAA---TGTAT-G-T-T-ATG---T---TTTATG--GTGTT--T--GTCTTTTGTTATTG-T--A----TA------TTTA-ACGACGAATA------TAAGT---GGAATTGCAACATCTT-CGTTTTCATTAAGAAAATCTTA-T--TT-A--TTGT-----CA--AAAAATCACA-AATTT-AATAT-T-AAATACAATGTTT-TTTATTGTATTTCGC-GTAA-A-ACATTTG-AATAA---CAATGCAATAGT---------T---------TCAATATATTCGA---AT------GT----AAAT---T-------GTGACACGATTTCCGACGTTATTGAAAAGTGGCCGGTACTG-TTTTTGTCAT-TGATTGATACGGTAATCGATACTCATTCC-GGAATTGTATTTAC---------------TAAAA-TGTTTTC-GAGAAAT-ATCT-A-------------TG-A-------A-ATGACATTTTCACATTATA-TAATACA-TGCTGTATAACTTAAGCTGCCATATC---TATTTACCATACAGATA---TATCTTCAAAC--AGGGCAT--TG--gtgttcctcaatcacaatcatatagtatcggagaagcccgtgcgtcagtccatccgatcttctctgttctatgactttctcacacata
gi|8 : atattgcgatttatTTATGTTTTCGACCTAGACGGTACCTGCTAGATCA----GGTTTTTGACCGAGTAAT---ACAGTAT-TCGACCGAGA-GATAC-------------T---GTC------TTCGACAGA-C-GCA-TTTGAT-------ATT-ACTTTAAACATT--------TTATTTTT-CATGAAA-TAAAA-AT-------TAATATACACAA--TAT-AAGTCAAAA---AA-GTT---------TA-A----A--ATACATCAA---TAGA--------------ATGTATATGAATTATGT----A---------------GG--TAC---TGT-T-T-T-T-ATG---G---T-------GTATG--TTTGT----TGTTATTG-T--A----TACCAGTTTTTA-ACGAAGAACA------ATTGT---GGAATTGCAAAATCTT-CGTTTTCAT---AAAAATAAGA-T--TT-A--TTGT-----TACAAAAAGTCTGA-CATTA-ACTGT-T-CAATAAAATGTAT-TTTAATGTATTT-----TAATA-GCATT---GCTAA---TGTTTCAATATA---------T---------TC---------AA---AG------GG----AAAT---TTC--C-TGTGATACGGTTTTCGTCGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGATATTCGATATTCATTCA-CAAATTGTATTTTTATTTTTTTCAATGAATAACC-TA-TTTT-GCGTAAC-ATAT-ATGAG-TCTTTAAAGG-ATC-ATATA-----------TACATTATA-AAATAtgccttgtgttcttcaatcacaagcatatagtaccggag
gi|9 : atgaatattgtgatTTATGTTTTTGACCGAGACTGTACTCGCTT--TCA----GGTTTTTGAC----------------------A--GAGA-GATAC-------------T---GTC------TTTGACAGA-C-GCA-TTTTATCAGGGTTACCGACTT--AAGGTATTATTTTTTTATTTTT-CATACAA-TACAC-AC-------GAATATACACAA--TAT-TAGTCATAA---AA-GTTACATAAATATA-A----T--GTATATCGA---TGAATTAT----------GT-------------------A---------------GG--TTT---TGT-T-T-T-T-ATG---G---T-------GTGTGTCT--GT----TGTTATT-------------------------GACAAACT------CTAGT---GGAATTGCAAAAA-----------------AAAATCAGAAC--TTGA--GTGT-----T-----AAAT-------TT---ATGTAT-TGATA-----TAT-TTTAATGTCTTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGTTTAATTATAT---------TA---------GA---AT------GT----ATAT---TTC--C-TACGATATGGTTTTCAAAGTTATTGGAAAATGGCCGGTATGG-TTTCCG---T-TG-TTGATACGGTATACGATACTCATTCA-GGAA------------TTTGTT-AATGAACAAAA-TATTTTT-GAGTAAT-ACCT-ATGAA-TC--------------TTTA-AAGATGTATTCAGATTTTA-TAATACA-TTTTGTATTACTT-AACTGCCATTTC---TACATATCATGCAGACA---TATCTTCAAAT--AGTgtgatttt
blockSeqs : GA AGCC GAT A T ATTTTAAAAAGGG ACT ACCTGT A A . C A C A TTATTTTTT T G A CGCAAAA AT G AAT T ACATAAATA G ATTGC ATG G ATTTATACGAATTATACTGGCA CC AAA GA A ATG TTTTATGGCGTGTGTCT CTTT A TA CTCG CCAGTT C CATAGT AAA G AAA AAA . G AG A CA T C A A A . A T C C TTT A TATAATATATTCG TAT TCGAAG TCGA A AAA TT G T A T C C T T G ATGACTCTTTAATGATCGA C T T T A GCT GCCT CTA TGTG CTTCGACC CTCTTC GG TTG AA A G G . CA C G ATACTA G T A . T T C C TG ACTACA . GT T T
blockSeqs : . . . . . . . . . . . C T C G T . . . . . . . . . . ATTAC . A ATGCATACGAATTATGTA . . AT . T TTTTATGGTGTTT . . . . . . . . . CAA GAA . . . A . . . . . A . . . . . A G TTCAATATATTCG T TG . T . . . . . . . . T . . AAGAATTTTTAATGATCTA . . . A A . GT C TGTA G . GC . . A . . . G . . . . .
blockSeqs : . . . . . . . . . . . T T C C T . . . . . . . . . . TGN . T ATGTATATGCATTATATA . . G . A TAGGTATGTAT . . . . . . . . . CAA GA . . . G . . . . . A . . . . . . G TTCTATATATTCG . . . T . . . . . . . . T . . ATGAGTCTTTAAAGGATCA . . . A C . CT C TGTA G . . . . .
blockSeqs : . . . . . . . . . . . T T C G T . . . . . . . . . . A . G ATGCATATGAATTATGTA . . T . A GTGTGTGTCT . . . . . . . . . CAA GA . . . T . . . . . A . . . . . . A TTCAATACAGTCA . . . T . . . . . . . . T . . TGAATCTTTAATGGTCGA . . . A A . T C TGTG A .
blockSeqs : . . . . . . . . . . . C T A A A . . . . . . . . . . T . G ATGTATATGAATGATGTG . . T . T GCTTGTGTCT . . . . . . . . . CAG GA . . . T . . . . . A . . . . . . A TTCAATATAATCG . . . T . . . . . . . . T . . AAGAATCTTTAATGTTCG . . . A A . C C TGTG
blockSeqs : . . . . . . . . . . . C A G A T . . . . . . . . . . A . A ATGTATATGAATTATGTA . . A . T TTGTCTGTCC . . . . . . . . . CAA GA . . . T . . . . . A . . . . . . G TTCAATATATTCG . . . T . . . . . . . . A . . AATGAATC . . . T A . T C TA
blockSeqs : . . . . . . . . . . . A T T A C . . . . . . . . . . A . T GTGTATATGCATATGTA . . G . T GTGTGTGTCT . . . . . . . . . TAA AA . . . T . . . . . A . . . . . . G TTAATTATATTAG . . . T . . . . . . . . T . . ATGAATCA . . . T A . C T AG
blockSeqs : . . . . . . . . . . . C A G A T . . . . . . . . . . T . A TGAATTATGTA . . T . T GGGTTTGTAT . . . . . . . . . . TA . . . T . . . . . A . . . . . . G TTCAATATATTG . . . T . . . . . . . . T . . ATGCATA . . . T A . T . TG
blockSeqs : . . . . . . . . . . . T T C A T . . . . . . . . . . T . G TTATGTA . . T . T TTGTGTGTCT . . . . . . . . . . TT . . . T . . . . . A . . . . . . T ATATTGT . . . T . . . . . . . . A . . ATGAATC . . . T T . T . .
blockSeqs : . . . . . . . . . . . A T C A T . . . . . . . . . . A . T TATG . . G . N GTGTATGTTT . . . . . . . . . . TA . . . A . . . . . T . . . . . . G TTCG . . . A . . . . . . . . T . . TTGGATC . . . . . . . .
blockSeqs : . . . . . . . . . . . C T A A T . . . . . . . . . . T . T GCC . . G . T GTGTGTGTCT . . . . . . . . . . GA . . . C . . . . . A . . . . . . G TTCA . . . A . . . . . . . . T . . ATGAATC . . .
blockSeqs : . . . . . . . . . . C T T . . . . . . . . . . . . T . N NNN . . T . T NNNNNNNN . . . . . . . . . . . . . . T . . . . . A . . . . . . G TTCG . . . A . . . . . . . . . . . ATGA . .
blockSeqs : . . . . . . . . . C . C . . . . . . . . . . . . A . T AT . . N . T TAGGT . . . . . . . . . . . . T . . . . . . . . . . . . T TTCA . . . A . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . T . G AT . . T . . TAT . . . . . . . . . . . . . . . . . . . . . . . . . G TTC . . . T . . . . .
blockSeqs : . . . . . . . . . . . . A AT . . T . . CGT . . . . . . . . . . . . . . . . . . . . . . . . TTC . . . . . . .
blockSeqs : . . . . . . . . TCG . . . . .
blockSeqCons : GTGTGTGTCT*************** GA* ** T***** TTCAATATATTCG****************** ATGACAGATCA************ T*** C** TGTG**
originalCons : GTTATGTTTTCGACCGAGACGGTACTCGCTC--TCA----GGTTTTCGACCGAGTAAT---ACGGTAT-TCGACCGAGA-GGTAC-------------T---GTC------TTCGACAGA-C-GCA-TTTTATCAGGGTTACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAA---AA-GTT---------TA-A----T--ATACATAAA---TANA--------------AT-------------------A---------------GG--TAC---TGT-T-T-T-T-ATG---T---T-------GTGTG--T--GT----TGTTATTG-T--A----TA------TTTA-ACGACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAAGAAAATGTGAAT--TT-A--TTGT-----TA--AAAAATCAGA-AATTA-AATGT-T-TAATACAATGTAT-TTTAATGTATTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGT---------T---------TC---------GA---AT------GT----ATAT---TTC--C-TGTGATACGGTTTTCGACGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCGATACTCATTCA-GGAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GCGTAAT-ATCT-A-GAA-TCTTT-AATG-ATC-ATTTA-AAGACGTTTTCACATTATA-TAATACA-TTTTGTANTACTTAAACTGCCATATC---TACTTACCATGCAGATA--CTGTCTTCAAAC--AGTGCAT--TG--ACTTATAAT----G---ATAT------AAATAGTGCATGNAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTTTCTCATATCAGTTNATTTATACTTCTATTCATNTGTAAACATTTGTAAAAAGTAAACGTCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACANNGGAGTGTGTCAGCNTCCGATATTAATAATTTAATATCTACACTTGTNCACAAACATACTAATTCGGGCTCATAAAGCAGANAGGGTATTTATTATTATCTAAATTATTGCAATTTATTCTATTTNTATAAAATCAATGTCGAAAATGCTTGTTAATGAAATTNAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGT-ACTGTATATGAATATTGTCGTTTT-A-TA-GAAA-AGTAGACGATTTCAGTACATATCCTGTATACGTTATCGAACGAGAACTAAGAAGTGATAGATCTATCATCACGCGTGATGAAGCCTCGATGACAA-TTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGGGACATCGAAAGCAATTA----TTTTTTAGATC
finalCons : GTTATGTTTTCGACCGAGACGGTACTCGCTC--TCA----GGTTTTCGACCGAGTAAT---ACGGTAT-TCGACCGAGA-GGTAC-------------T---GTC------TTCGACAGA-C-GCA-TTTTATCAGGGTTACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAA---AA-GTT---------TA-A----T--ATACATAAA---TANA--------------AT-------------------A---------------GG--TAC---TGT-T-T-T-T-ATGGTGTGTGTCT---------------GT----TGTTATTG-T--A----TA------TTTA-ACGACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAAGAAAATGTGA-T--TT-A--TTGTT-----A--AAAAATCAGA-AATTA-AATGT-T-TAATACAATGTAT-TTTAATGTATTTCGC-ATAA-A-ACATTTG-AATAA---CAATGCAATAGTTTCAATATATTCG------------------A---AT------GT----ATAT---TTC--C-TGTGATACGGTTTTCGACGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCGATACTCATTCA-GGAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GCGTAAT-ATCTATGACAGATCA------------TTTA-AAGACGTTTTCACATTATA-TAATACA-TTTTGTANTACTTAAACTGCCATATC---TACTTACCATGCAGATAT---GTCTTCAAAC--AGTGCATTGTG--ACTTATAAT----G---ATAT------AAATAGTGCATGNAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTTTCTCATATCAGTTNATTTATACTTCTATTCATNTGTAAACATTTGTAAAAAGTAAACGTCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACANNGGAGTGTGTCAGCNTCCGATATTAATAATTTAATATCTACACTTGTNCACAAACATACTAATTCGGGCTCATAAAGCAGANAGGGTATTTATTATTATCTAAATTATTGCAATTTATTCTATTTNTATAAAATCAATGTCGAAAATGCTTGTTAATGAAATTNAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGT-ACTGTATATGAATATTGTCGTTTT-A-TA-GAAA-AGTAGACGATTTCAGTACATATCCTGTATACGTTATCGAACGAGAACTAAGAAGTGATAGATCTATCATCACGCGTGATGAAGCCTCGATGACAA-TTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGGGACATCGAAAGCAATTA----TTTTTTAGATC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TAGACTGACTGGTGCTATAACAACCAATCATCAAACAGTGTAGACTGACTGGTGCTATAACCTAGTATGTTCTTCAAGCACAATCATACTGTATCTGTTATTGGCCTAGTTTAACAAATTCTGCGTCGTATTTCATTTGGCTCTCCCGTCA
Unaligned ( gi|27 ): TTGTTTCATGCTCTTGCGGGGGTCTTATCTTGTGTTTACGTTCTCGTAATCTACACTTCTCATCGCCTCTATTTGTGACTATGTAATAGGTGGTAAGGTCA
Unaligned ( gi|28 ): TGTGTCTTGTATGGCTTATTATGTTTGGTCCCAACAAAAGATGCATTTCCGGTTGAATTCTTGATTTATTAGCAAATATCATT
Unaligned ( gi|29 ): TCAATGATTTTTAATTTTAACAGAGTCATGGGCTTTCTTAAGAAATGATAAGTATT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111111111 111111111 111111 111111111111111111111111111111111111111111111111111111111 111111111 11111111 88888888888888888888 111111111111 111 33333333 111 11 77777777777777777777777 333333 1 11 1 1 11 4444444 1 33 33333
lowQualScore : 44 7777 555 2 0 2 4444444444444 444 777777 2 5 0 1 1 2 1 99999999 2 2 2 8888888 33 2 666 000000000 2 555555 66666 1 666666666666666666666666666666666666666666666666666666666 33 66666 99999999 555555555 2 3 1 33 666666 4 2 777777 444 2 0 999 0 7777 33 33 66666 1 33 2 0 2 2 2 2 1 2 2 2 0 2 2 2 6 33 2 0 2 2 2 2 2 1 2 2 11111111 77777777777777777777 555555555555 44 2 3 3 4 4 666 33 222 2 44 0 22 55 22222222 0 77 777 33 3 1 1 66666666666666666666666 22 1 1 000000 1 1 5 88 1 3 6 3 44 9999999 3 0 0 0 0 44 3 55555
lowQualScore : .. .... ... . . . ............. ... ...... . . . . . . . ........ . . . ....... .. . ... ......... . ...... ..... . ......................................................... .. ..... ........ ......... . . . .. ...... . . ...... ... . . ... . .... .. .. ..... . .. . . . . . . . . . . . . . . . .. . . . . . . . . . . ........ .................... ............ .. . . . . . ... .. ... . .. . .. .. ........ . .. ... .. . . . ....................... .. . . ...... . . . .. . . . . .. ....... . . . . . .. . .....
lowQualScore : 22 1111 000 7 5 7 7777777777777 777 777777 7 3 1 5 1 1 1 77777777 5 5 5 1111111 44 4 999 000000000 5 000000 22222 0 222222222222222222222222222222222222222222222222222222222 44 22222 11111111 000000000 6 6 1 22 888888 7 1 222222 444 5 4 111 1 3333 44 44 22222 4 44 1 4 5 5 5 5 9 5 5 5 5 5 5 5 2 44 4 1 7 7 9 9 9 7 9 9 22222222 88888888888888888888 888888888888 22 3 1 3 5 5 444 11 777 1 11 9 99 55 88888888 2 00 555 88 2 0 0 55555555555555555555555 00 0 0 000000 0 0 5 55 0 3 7 3 00 0000000 3 7 7 7 7 00 7 77777
consensus : GTTATGTTTTCGACCGAGACGGTACTCGCTC--TCA----GGTTTTCGACCGAGTAAT---ACGG-TATTCGACCGAGA-GGTAC-------------T---GTC------TTCGACAGA-C-GCATTTTATCAGGGTTACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAAAA---GTT---------TA-A----TATACATAAA-----TANA--------------A------T-------------------A---------------GG--TAC-----TGT--------TTT-------T-ATGGTGTGTGTCTGTTGTTATTGT--ATA------TTTA-ACGACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAAGAAAATGTG---A--TTTA--TTG-----TTA--AAAAATCAGA-AATTA-AATGT-T-TAATACAATGTAT-TTTAATGTATTTCGC-ATAAA-ACATTTGAATAA-CAATGC-AATAGTTTCAATATATTCGAAT-GTATATTTC--C-TGTGATACGGTTTTCGACGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCGATACTCATTCA-GGAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GCGTAAT-ATCTA--------TGA--------------GATC-ATTTAA------------AGA--CGTTTTCACATTATA-TAATACA-TTTTGTANTACTTAAACTGCCATATC---TACTTACCATGCAGATA---TGTCTTCAAACAGTGCATTGTGAC--TTATAAT----G---ATATAAATAGTGCATGNAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTTTCTCATATCAGTTNATTTATACTTCTATTCATNTGTAAACATTTGTAAAAAGTAAACGTCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACANNGGAGTGTGTCAGCNTCCGATATTAATAATTTAATATCTACACTTGTNCACAAACATACTAATTCGGGCTCATAAAGCAGANAGGGTATTTATTATTATCTAAATTATTGCAATTTATTCTATTTNTATAAAATCAATGTCGAAAATGCTTGTTAATGAAATTNAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGT-ACTGTATATGAATATTGTCGTTTT-A-TA-GAAA-AGTAGACGATTTCAGTACATATCCTGTATACGTTATCGAACGAGAACTAAGAAGTGATAGATCTATCATCACGCGTGATGAAGCCTCGATGACAA-TTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGGGACATCGAAAGCAATTA----TTTTTTAGATC
Reference ( family-584 ) : GTTATGTTTTCGACCGAGACGGTACTCGCTC--TCA----GGTTTTCGACCGAGTAAT---ACGG-TATTCGACCGAGA-GGTAC-------------T---GTC------TTCGACAGA-C-GCATTTTATCAGGGTTACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAAAA---GTT---------TA-A----TATACATAAA-----TANA--------------A------T-------------------A---------------GG--TAC-----TGT--------TTT-------T-ATGGTGTGTGTCTGTTGTTATTGT--ATA------TTTA-ACGACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAAGAAAATGTG---A--TTTA--TTG-----TTA--AAAAATCAGA-AATTA-AATGT-T-TAATACAATGTAT-TTTAATGTATTTCGC-ATAAA-ACATTTGAATAA-CAATGC-AATAGTTTCAATATATTCGAAT-GTATATTTC--C-TGTGATACGGTTTTCGACGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCGATACTCATTCA-GGAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GCGTAAT-ATCTA--------TGA-----C-----A--GATC-ATTTAA------------AGA--CGTTTTCACATTATA-TAATACA-TTTTGTANTACTTAAACTGCCATATC---TACTTACCATGCAGATA---TGTCTTCAAACAGTGCATTGTGAC--TTATAAT----G---ATATAAATAGTGCATGNAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTTTCTCATATCAGTTNATTTATACTTCTATTCATNTGTAAACATTTGTAAAAAGTAAACGTCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACANNGGAGTGTGTCAGCNTCCGATATTAATAATTTAATATCTACACTTGTNCACAAACATACTAATTCGGGCTCATAAAGCAGANAGGGTATTTATTATTATCTAAATTATTGCAATTTATTCTATTTNTATAAAATCAATGTCGAAAATGCTTGTTAATGAAATTNAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGT-ACTGTATATGAATATTGTCGTTTT-A-TA-GAAA-AGTAGACGATTTCAGTACATATCCTGTATACGTTATCGAACGAGAACTAAGAAGTGATAGATCTATCATCACGCGTGATGAAGCCTCGATGACAA-TTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGGGACATCGAAAGCAATTA----TTTTTTAGATC
gi|1 : TTATGTTTTCGACCGAG
gi|1 : gtcacttccgaacgctgatatacccgaactgtgatGTTTTCGACCGAGTAAT---ACGG-TATTCGTCCGAGA-GATAC-------------T---GTC------TTCGACAGA-CGGAATTTTA-AAGGGTAAGTAACTTTGAAGGTA--------TTATTTTT-CATGAAA-TAAAT-GT-------GAAAATACACGA--TAT-ACGTCGCAAAA---ATT---------TG-A----TAAACATAAA-----TATA--------------A------T-------------------A---------------GG--TAC-----AGA--------TTT-------T-ATGTTGTCTG--CGTTGTTATTGT--AT-------TTTA-ACACCGAACA------CTAGT---AGAATTGCAAAAACTG-CGTTTTTATCAAGTAAATGTAAACA--GTTA--TTGCCTTTCTA--CAAAATCAGA-AATTA-AATGT-T-TGATAGAATGTTTGTTT--TGTATTTTGC-ATAAA-ACAATTGAATAA-CAATAC-A-----TTCAA--------AA--ATACATTTC--C-TATGATTCGATGTTGGACGTTGTTTAAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTCAATACTCATCCA-GGATTTGTGTATACATTCTGTT-GATGAATAAAA-TGTATTC-GCGTAAT-ATTTAAAAATTCTTAA-----T--------GATCGATTTAA------------AAA--TGTTTCCACA-TATA-TAATACA-TTTTGAAATACTTATACTGCTAT-CC---CGCTT-TCTTGCATATAGCCTGTC-TCAG--AGTGCAT----ACATTTATAAT----G---ATACAAACAGTGTGTGAAATGTAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGCATTGTCTCATATCAGTTTATTTATATTTCTATTCATTTGTAAACATTTGTAAAAAATAAACATCATAATCTTGTGCAGTTAGCCCCGAAATGATAAAGCGTGTTACAGTGGAGTATATCAGCATCCGATATTAATAATTTAATATCTACACTTATTCACAAAC------ATTCGGGCTCATAAAGCAGACAGGGTATTTATTATTATCTAAATTATTGCAATTTATTTTATTTATATAAAATC-ATGTCGAAAATGCTTATTAATGAAATTAAGATACTCTTTTGGAG-ATAGTTAATCTTTGATTTGATTATGT-ACT-TGTATGAATATTGTTGTTTTAA-TA-GGAATAGTAGATGATTTCAGTACATATCCTGTATATGTTACCGAACGAGAACTAAGAAGTGATAGATCTATCATCATGCGTGATAAAGCCTTAATGACAATTTCAGTTTTCACAAGTTTCACATATTTAACTGTATAACTGGTGACACCGAAAGCAATTACTAGTTTTTTAGATCtaatacggtattcgtccgagagatactgtcttcgacagacggaattttaaagggtaagtaactttgaaggtattatttttcatgaaataaatgtgaaaatacacgatatacgtcgcaaaaatttgataaacataaatataataggtacagattttatgttgtctgcgttgttattgtattttaacaccgaacactagtagaattgcaaaaactgcgtttttatcaagtaaatgtaaacagttattgcctttctacaaaatcagaaattaaatgtttgatagaatgtttgttttgtattttgcataaaacaattgaataacaatacattcaaaaatacatttcctatgattcgatgttggacgttgtttaaaaatggccggtacggttttcgtcattgattgatacggtattcaatactcatccaggatttgtgtatacattctgttgatgaataaaatgtattcgcgtaatatttaaaaattcttaatgatcgatttaaaaatgtttccacatatataatacattttgaaatacttatactgctatcccgctttcttgcatatagcctgtctcagagtgcatacatttataatgatacaaacagtgtgtgaaatgtaatttgcatctcattttcgtagtcagtgttgcattgtctcatatcagtttatttatatttctattcatttgtaaacatttgtaaaaaataaacatcataatcttgtgcagttagccccgaaatgataaagcgtgttacagtggagtatatcagcatccgatattaataatttaatatctacacttattcacaaacattcgggctcataaagcagacagggtatttattattatctaaattattgcaatttattttatttatataaaatcatgtcgaaaatgcttattaatgaaattaagatactcttttggagatagttaatctttgatttgattatgtacttgtatgaatattgttgttttaataggaatagtagatgatttcagtacatatcctgtatatgttaccgaacgagaactaagaagtgatagatctatcatcatgcgtgataaagccttaatgacaatttcagttttcacaagtttcacatatttaactgtataactggtgacaccgaaagcaattactagttttttagatc
gi|10 : gtcacttccgaacgctgatatacccgaactgtgatttatACTGTACATGCCC--TCA----TGTTTTCGACCAAGTAAT---ACGG-TATTCGACCGAGC-GATAC-------------T---GTT------ATCGACAGA-C-GCTTTTTATCAGGGTAACTGACTTTAAAGGTA--------TTATTTTT-CATGAAA-TAAAT-AT-------GAATATACACAG--CAG-TAGTCGCAAAA---GTT---------TA-A----ATTAGATTAA-----TAGA--------------A------TGCATACGAATTATGT----A---------------GG--TTC-----TGT--------GTTA------TGATGGTGTGTGTCTGTTGTTATTGT--ATA------TTTA-ACGACAAACT------CAAGG---GGAACTGCAAAAACTT-CGTTGTCATAAAGAAAATGTG---A--TTTA--TTG-----TAA--AAAAATCATA-ACTTA-AACGT-T-AAATACAATGTAT-TTTAATGTATTTCGC-ATAAA-ACAATTGAATAA-CAATGC-AATAATTTCGATATATTCGAAG-GTAAATTTT--C-TGTGATACCGTTT-CGACGTTATTGGAAATTGGCCTGTAAGG-TTTTCGTCAT-TGATCGATTGGGTATTCGAT---------------TGTATTTACATTTTGTT-AATGAATAAAA-TGTTTAT-GCGTAAT-ATCTA--------TG------C-----A-----T-ATTTAA------------AGA--TGTTTTCACATCATA-TAATACA-TTTTGTA
gi|11 : ggtataccaaaattgcgttttttGTTACCTTTTCGACCGAGACG-TACTCGCTT--TCA----GGTTTTCGACCGAG--AT----CGG-CATGCGACCGAGA-TGTAT-------------T---GTT------TTCGACAGG-C-GCATTTAATCAGGGTTACTGACTTTAAGGGTA--------TTATTTTT-CATGAAA-TA-----T-------AAGTATACACAA--TAC-TAGTAACAAAA---GTT---------TGGA----TA-ACATAAA-----TAAA--------------A------TTTATACGAATTATACTGGCA---------------GGCCTAC-----TGT--------TTT-------T-ATGGCTTGTGTCTGTTGTTATTGT--ATA------TTTA-ACGGCGAACA------CTAGT---AGAATTGCAAAAGCTT-CGTTTTCAACAAG-AAATGTG---A--TGTG--TTG-----TAA--AGAAATCAGA-AATTA-AATGT-C-AAATACAACGTAT-TTTGATGTATTTCGCAAAAAA-ACATTTGAATAA-CATTGC-AATAGTTTCAATATATTCGAAT-ATA-AATTC--T-TGTGATACGGTTTTCGACGTTACTGGAAAAGTACGGGTTCGGTTTTTTGTCAT-TGATTGCTACGGTATTCGATACTCTTTAA-GGAATTGT
gi|12 : gtggataggcctatattgtgaTTATGTTTCTGACCGAAACGGTACTCGCTC--TCA----GATTTTCAACCGAGTAAT---ACGGATAT-CGACCGATA-GATAC-------------T---GTC------TTTGACAGG-C-GAATTTCATTTTGATTACTGACTTTAACAGTT--------TTATTGTT-CCTGAAA-TAAAT-AT-------GAATATACACGA--TAT-TAGTCACAAAATAAGTT---------CA-AATTGCATATATAAAATGTATATG--------------AATTATGT-------------------A---------------GG--TAC-----TGT--------TTTAATGTTTT-ATGGCGTGTGTCTGTTGTTATTGC--ATA------TTCA-ACGGCGAACA------CTAGT---GAAATAGCAAAAACTT-CATTTTCATCAAGAAAATTTG---A--TTTA--TTG-----AGA--AAAAGAGAGA-AATTA-AATGA-T-GAATACATAATAT-TTTAATGAATTTCGC-ATAAA-ACATTTGAATAT-CAATGC-AACAGTTTCAATATATTCGA
gi|13 : gatataccaatattgctatG---A--TTTA--TTG-----TTA--AGAAATCAGA-AATTA-AATAT-T-TAATACAATGCAT-TTTAATGTATTTCGC-ATCAA-ACATTTGAATAA-CAATGC-AATA------ATATATTGTAAT-GATTATTTC--C-TGTGATACGGTATTCGACGTTATAAGAAAATGGCCGGTACGA-TTTTCGTCAT-TGATTGATACGGCATTCGATACTTATTCA-AGAATTGTATTCACATTTCGTT-AATTAAAAAAA-TA-TTGT-GCATATT-GTATA--------TGA-----CTCTTTAATGATCGATTT-A------------AGA--CATTTTCACATTAAA-TAATACC-TGTTGTATTACTTAAACTGCCATATC---TACTTACCATGCAGATA---TATCTTCCAACAGTGCATTGTGAC--TTAT
gi|14 : -TGTGATACAGTTTTCGACGTTGTTGGAAAATGACCGGTACGG-TTTTCGTCAT-TGATTGATACGGTATTTGATACTCATTCA-GAAATTGTATTTACATTTTGTT-AATGAATAAAA-TGTTTTT-GTGTAAT-ATCTA--------TGA---------------ATC--TTTAA------------AGA--CGTTTTCACATTATA-TTATACA-TTTTGTAATACTTAAACTGCAATATC---TACTTATCATGCACA-G---TGTCttgttcttcaatcacaatcatatagtatcgga
gi|14 : TCTTCAAACAGTGCATTGCGAC--TTGTatgtaactaagtcactagcatgcagatatctcttcaaacagtgcattgcgacttgtgtgttcttcaaacataattacgttgtatcggagtatg
gi|15 : tgtgatacagttttcgacgttgttggaaaatgaccggtacggttttcgtcattgattgatacggtatttgatactcattcagaaattgtatttacattttgttaatgaataaaatgtttttgtgtaatatctatgaatctttaaagacgttttcacattatattatacattttgtaatacttaaactgcaatatctacttatcatgcacagtgtcatgtaactaagtcactagcatgcagatatcTTATGTGTTTGACCGAGGCGGTACTCGCTC--TCA----GGTTTTTGACTGAGTTAA---ACGG-TATTCGACCGAGG-GGTACATTTTAAAAAGGGT---GTCACCTGTTTTGATGTA-T-ATGTTTCGTTAAGG----TGATTT-----GTC--------ATATTTTT-TTTAAAAGTAAATAAT-------AGATAT---CGA--TAT-gtgttcttcaaacataattacgttgtatcggagtatg
gi|16 : tgattgtgcttttatggcttatataatgtcatgttccaacgaaagttgcatttccggccgggacctcgattaattaccaaatataattaccacagtgaataaaccaatattttcgatTTATGTTTTCGACCGTGACGGTACTCGCTC--TTAAGCCGGTTATCGACCGATTAAT---ACGA-TATTCGACCGAAA-GGTAT-------------T---GCC------TTCGACAGA-T-GCATTTCATCAGGGTTACTGACTTTAA-----------------------ATAAAA-TGAAC-AT-------GAATATACACGA--TAG-TAGTCACAAGA---GTT---------TA-A----ATTACATAAA-----TTGA--------------A------T------------------------------------G--TA--------T--------ATT-------A-AT--------TATGTTTTTATTGT--ATA------TTTA-ACGACCAACA------CTAGT---ATAATTGCAAAAACTT-CGTTTTgatccagcgaatataagttc
gi|17 : atataccaatattgcgaTTATGTTTTCGACCGAGTCGGTACTCGCAC--TCA----AGTTTTCGACCGAGTTGT---ACGC-TATTCGATCGAGA-TGTAC-------------T---GTC------TTTGCCGGA-C-GCATTTTATCAGGGCTAACGACTTTG--------------------TT-CATGAGA-TAAAT-AT-------GAATATACACGA--TAT-TAGACACACAA---TTT---------TT-A----AACACATAGA-----TAGA--------------A------T-------------------G---------------TA--TAT-----GAC--------TTA-------T-GTAG-GTATGTATGTTCTTATTGT--ATA------TTTA-ACAACGAATA------TTAGTAAAGGAATTGC-AAAACTT-TGTTTTCAagttttagtatttattttaaag
gi|18 : tgcatataccagctttgtgctTGCTGTTATTGCTAATA------TGTACAC------TA------CTGGT---GGGCGTTCAAAAACTG-AGTTTTTGTCAATAAAATGT-------TGTAAGTTG-----T-A--AACATTTAGATAAGTA-AATGT-TATAATA------AT-T--AATGCATTTCGC-ATAAACACTTTTGAATAA-CGATGC-AATAATTTCAATATATTCGTTT-ATATAGTTT--T-AATGAGACTGTATTCGaa
gi|19 : tgctatAT-TAATTACATAA---ATA---------TA-A----TGTATACGAA-----TTAT--------------G------C-------------------C---------------GG--TGC-----TGT--------GTT-------T-ATCGTGT-TGT-TATTGATACT-C--GTA------TTTA-ACAACGAACA------CTAGT---GGAATTGCAAAAACTT-CGTTTTCATCAGGAATATGTG---A--TTTA--TTG------TA--AAAAATCAGA-AATTA-AATGA-A-TAATTCAATGTAT-TCCAATGTATTTCGT-ATAA----------------AATGC-AATAGTTTCAATATAATCGAAT-GTA-ATTTT--CGTGTGATATCGTTTTCGGCGTTATTGGAgagcaaagtcccggcatcaaaacgtatatacacaaatgcaatacttaattggaagactatttcacatcacattggt
gi|2 : gc---GTT---------TA-G----TATACATAAA-----TATA--------------A------TGTATATGCATTATAT----A---------------GG--TAC-----TGT--------TTT---------ATGTTGTCTGTCCGTTGTTATTGT--ACT------TTTA-ACACCGAACA------CTAGT---AGAATTG-AAAA-----------TATC-AGAA---------A--TTAA--ATG-----TTT--AA------------TACAACGT-T-T--T-TATTGTAT-TTTGA-----------ATAAA-CCAATTGAATAA-CAATGC-AATAGTTATAATATATTCGAAT-ATATATTTC--C-GATGTTACGGTTTTCGACGTTGTTGAAAAATGGACGGTACGG-TTTTCGCCAT-TGATTGATACGGTTTTCGATGCTCATCCA-GAATTTGTATATACATTCTGTT-ATTGAATAAAA-TGTATTT-GCGTAAT-ATCTA--------AGAATTTTT-----AATGATCTATTTAA------------AAA--TGTTTTCACA-TATA-TAATACA-TTTTGAAATACTTAAACTGCTATCCCGCTTTCTTA-CATGTTG-CC---TGTC-TCAA--AATGC------------ATAAT----G---ATATAAATAATGCATGGAATATAATTTGCA---TCTCAT--TTTCGTAGTCAGTGTTGTATTTTCTCATATCAGTTGATTTATACTTCTATTCATGTATAAACATTTGTAAAAAGTAAACGTCATAATCTTGT-----------------------GCGTGTTACACAGGAGTGTGTCAGCCTCCGATATTAATAATTTAATATCTACACTTGTGCACAAACATACTAATTCGAGCTCATAAAGCAGAGAAGGTATTTATTATTATTTAAATTATTGCAATTTATTCTATTTTTATAAAATTAATGTCG--AATGCTTGTTAATGAAATTTAAATACTCTTTTGAAG-CTAGTTAATCTTTGATTGGATTGTGT-AC-GTATATGAATATTGTCGTTTT-------AAA-AGTAGATGATAACAGTACATATCCTGTATACGTTATCAAATGAGAATTAAGAAGTGATAGATCTATCATCACATGGGATGAAGCATCGATGACAAGTTCAGTTTTTACAAGTTTCCTATATTTAATTGTATAACTGGGGACATCGAAAGCAATTA----TTTT
gi|20 : TTTTTGAGTACACTTCAT-TTTAACCTTGCTATGCCGCTGTATATGAATATTGTCGTTTT-ACTACAAAA-AGTAGACGATTTCAGTACATATCCTGTGTATGTCATCGAATGAGAACTAAAAAGTGATAGATCTATCATCACGTCTGATGAAGCCTCGATGACAA----------------TTTCACATATTTAACTGAATAACTGGGGACATCGTAAGCAATTA------TTTTAGATC
gi|21 : TT-AATGAATAAAA-TGTTTTTTGCGTAAC-ATCTT--------TG---------------GATC--TTTAA------------AGG--CGTTTTCACATTATA-TTAAACA-TATTGTA----TTAAACTTCCATATC---AACCTACCATGCAGATA---TAT-------TAGTGCATTGTAAC--TTGTttttt
gi|22 : G---A--TTAA--TTG-----TTA--AAAA-TAAAA-AAATA-AACGT-T-TAATACAATGTAT-TGTATTGTTTTTCTC-ATAGA-ACATTTGAATAA-CAATTC-AATAGTTTCAATATATTGGATTGGTATATTTT--A-CATGATATAATATCGGATGTTATTGGAAAATGGACAGAATGG-TTTTCGTCACATGATTTATGCGGTATTCGATACTCATgtgtttgttattcaatcataatcataataatagtatcgaagcatgtccgtgcgtctgtccgtccgatattgtccgtgta
gi|23 : ATATTCGAAT-ATATATTTC--C-TATGATACGGTATTCGACGTTATTTGAAAATGGACGGCACGG-GTTTCGTCAT-TGACTGATACGGTATCCGATACTCATC------------TTTACAATTTGTT-GATGAGTAAAA-TGTATTT-GCTTAAT-cattata
gi|24 : catagaattgtgatatttatgtaTTATGATTTCGACCGAGACGGTTCTCGCTC--TCA----GGTTTTCGACAGAGTAAT---ACGG-TATTCGTAAGAGA-GGTAT-------------T---GTC------TTCGGCAGA-C-ACTTTTCATAAAAGTAAGAGACTTTGAGGGTA--------TTATTTTC-CATGAAA-TAAAT-AT-------GAAAATACACGA--TAT-TAGTCGCAAgattattgaatactcaactgtagcatctcctaatattaa
gi|26 : tatataccagaactgcgat-CATG----TAAAT-AC-------GAATATACACAA--TAA-TAGTCACAAAA---GTT---------TA-A----ATTACATCAA-----TAAA--------------A------TGCATATGAATTATGT----A---------------GG--TTC-----TGA--------TTA---------ATGGTGTGTGTCTGGTGTTATTGT--ATA------TTTA-ACAATGAAC
gi|3 : acagttttcgctactataTTATGTTCTCGACCGAGACGGTACTCGCTT--TCA----GGGTTTCGACCAAGTGATGATACGA-TATTTGAGTAAGA-TGTAC-------------TACTGTC------TCCGACAGA-C-ACATTTTATCAGAATTATTGACTTTGAAGGTA--------CTATTTTT-CACGATA-AAAAT-AT-------GAATATACACGA--TAT-TTGTCACAAATT--GTT---------TA-A-----ATACATAAA-----TAGA--------------A------T-------------------GTATATGAATGATGTGAG--TAC-----TGT--------GTT-------T-GTGGGGTTTGTATGTTGTAATTGT--ATA------ACTA-ACTACAAACA------TAAGT---GAAACTGCAAAAACTT-T----------------TGTA---A--TTTA--TT------TTA--AAAAATCGGA-AATCG-AATGT-T-TAAAACAATGTAT-TGTTTTGTATTTCGC-ATAAA-ACATTTGAATTA-AAATGC-AATAGTTTCAATATATTCGAAT-TCATATTTC--A-AATGATACGGTATAAGGCGTTATTGGAAAA-GGACGGAACGG-TTTTCGTCAT-TGATTGATATTACATTCGGTACTCA-TCATGGAATTGTACTTACATTTTGCT-GATGAGCAAAACTAAATTT-GCTTAATGATC-A--------TGAATCTTT-----AATGGTCGATTT-A------------AGA--CGTTCCCACA-TATA-CAGTACA-TTTTGTAATCCTTAGACTGCCATATC---TACTTGTCATACACATA---CATCTTCAAACATTGCATTGTAAC--CTATGATCTTCGACCACATAAATATAGTAT---CTGTTACTGGCATTGTTTTATAAATTCTTTGTC-GTTTTCCATTTGTTCATACCtag
gi|30 : tggatataccaatatgcgatTTATGTTATCGACCGATACGGTAGTCGCTC--Tgt
gi|4 : agtgtagataccaatattgcgatTATGTTTTCGACCGAGACGGTATACGCTC--TCA----GGTTTTCGACCGAGTAAT---ACGG-TATTCTTTCGAGA-TGTAT-------------T---GTC------TTCGACAGA-C-GAATTTTATTAGGGTAAGTGTTTTTTAAGGTA--------TAATTTT--CATGAAA-TAAAT-AT-------GAAAATACACGA--TAT-TAGTCGCAAAA---TTT---------TA-A----TATACGTAAA-----TATA--------------A------T------------------------------------G--TACAAATATGC--------ATTA------T-ATAG---GTA-CTATTATT----------------TTTACAC--CGAACA------CTAGT---AGAATGGCAAAAACTTGCGTTTTCAT----GAAATGTT---A--TTAA--TT------TTA--AAAAATCAGA-AATTA-AATGT-T-TAATACAATGT-T-ATTATTGTATTTTGC-ATAAA-ACAATTGAATGA-CAAGTC-AATATTTTCTATATATTCGAAT-ATGTTTTTT--C-CATGATACGTTTTTCGACGTT---GAAAAATGGACGGTACGG-TTTTCGTTAT-TGATTGATACGATTTTCAATACTCATCCA-GGATTTGCATATACATTCTTTT-TATGAATAAAA-TGTTTTT-GCGTTAT-ATTTA--------AGA---------------ATC--TTTAATGTTCGATTACAACA--TGTTTCCACAT-ATA-TAATACA-TTTTGAAATACTTAAACTGCTAT-CC---TGCTT-TCATGCATGTAGCCTGCCT-CAGA--ATGCATAG--AT--TTATAAT----A---ATATAAATAGTGCATGCAATGTAATTTGCA---TCTTAT--TTTCGTAGTCAGTGTTGCATTTTCTTATATCA
gi|5 : atggatatacaaaaattgcgatgTTATGTT--CGACCGAGACGGTACTCGCTC--TCA----CGTTT-CGACTGAGTAAT---ACGA-TCTTCGACAGAGA-GTTAC-------------T---GTC------TTCGACAGA-T-GCATTTAATAAGGGTTACTGGCTTCAAAAGTA--------TTATTTTT-CATCAAA-TAAAT-AT-------GAATATACACTA--TAT-TAGTAACAAAA---ATT---------TA-A----TTTACATAAA-----TATAGTGTATATGCATATG------T-------------------A---------------TG--TAC-----CAT--------TTT-------T-ATGTTGTGTGTCTGTTGTTATTGT--ATA------TTTA-ACGACGAACACATAGTCTAGT---GGAATTGTAAAAACTT-C-----------GAAA--------A--CTAA--ATG-----TTA--AATA--C----AAT----GTGT-T-TG----AATG-------AAT----TTCGC-ATAAA-ACATTCGAAAAA-CATTGC-AATAGTTTCAATACAGTCAAAT-GTAAGTTTT--C-TGTGATACGGTTTTCGACATAAGTAGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGGTTTTCGATTCTCATTCA-GGAATTGTATTTATATTTTGTA-AGTGAATAAAA-TGTTTTT-GCGTAAT-ATCAA--------TGA---------------ATC--TTTAA------------ATA--CGTTTTTACATTATA-TAATACA-TCTTGTATTACTTAAACTGCCATACC---GACTTACCATGCAGATA---TGTCTTCAAACAAT-CATTGTGAC--TTATA
gi|6 : tgatatacaaacattacgat---ACGT-TATTCAAGCGAGA-TA-AC-------------T---GTC------TTCGACAGA-C-GCATTTTATCAGGGCTACTGACATTAAAGGTA--------TTATTTTT-CATGAAA-TGACT-ATCGCAAAAGAATGTATATGAATTATGTAGTTACT------GTT---------TT-A----TGNNNNNNNN-----NNNN--------------N------N-------------------N---------------NN--NNN-----NNN--------NNN-------N-NNNNNNNNNNNNNNNTGTTATTGT--ATA------TTTA-ACGACGAACA------ATAGT---G------CAAAAACTT-CGTTTTCATCAAGAAAATGTT---T--TTTA--TTG-----TAA--ATAAA--AGA-AGTTG-AATGT-T-TAATACAATGTAT-TTTAATGTATTTCAC-ATAAA-ACGTTTGAAAAAACAATGC-AGTGGTTTCAATATAATCGAAT-GTAAATTTTTTC-TGTGATACGGTTTTCGATGTTATTGTAAAATGGCCGGTACGG-CTTTCGTTAT-TGATTGATACGGTATTTGATATTCATTTA-GAAATTGTATTTTCATTTTGTT-AGTAAATAAAA-TGATTTT-GCGTTAT-ATCTA--------TGA---------------ATC-A-TTAA------------AGA--CGTTTTCACATTATATTAAT-TATTTTTGTATTACTTAAACTGCCATATC---TACTTACCATGCAGATA---CATATTCAAACAGTGCATTGTGAC--TTGTtgttcttcacaatcataataaattcttatatttccgtgcgcgagtccatccgatcatgtccgttcgagaactttctcacacgt
gi|7 : G-TTTTCGACCGAGATGGAAC-------------G---G-----------AACAGAACAGAATTTTATCAGGGTTAATGACTTTAAAGGTA--------TTATTTTTTCATAAAA-TAATT-AC-------GAATATACA--A--TAT-TAGTCATAAAA---GTT---------TA-AATTACATACACAAC-----TGTAT-------------A------T-------------------G---------------GA--TAA-----TGTATGTTATGTTT-------T-ATGGTGTTTGTCTTTTGTTATTGT--ATA------TTTA-ACGACGAATA------TAAGT---GGAATTGCAACATCTT-CGTTTTCATTAAGAAAATCTT---A--TTTA--TTG-----TCA--AAAAATCACA-AATTT-AATAT-T-AAATACAATGTTT-TTTATTGTATTTCGC-GTAAA-ACATTTGAATAA-CAATGC-AATAGTTTCAATATATTCGAAT-GTAAATT-------GTGACACGATTTCCGACGTTATTGAAAAGTGGCCGGTACTG-TTTTTGTCAT-TGATTGATACGGTAATCGATACTCATTCC-GGAATTGTATTTAC---------------TAAAA-TGTTTTC-GAGAAAT-ATCTA--------TGA-----------------------AA------------TGA--CATTTTCACATTATA-TAATACA-TGCTGTATAACTTAAGCTGCCATATC---TATTTACCATACAGATA---TATCTTCAAACAGGGCATTGTGCC--TTGTgtgttcctcaatcacaatcatatagtatcggagaagcccgtgcgtcagtccatccgatcttctctgttctatgactttctcacacata
gi|8 : atattgcgatttatTTATGTTTTCGACCTAGACGGTACCTGCTAGATCA----GGTTTTTGACCGAGTAAT---ACAG-TATTCGACCGAGA-GATAC-------------T---GTC------TTCGACAGA-C-GCATTTGAT-------ATT-ACTTTAAACATT--------TTATTTTT-CATGAAA-TAAAA-AT-------TAATATACACAA--TAT-AAGTCAAAAAA---GTT---------TA-A----AATACATCAA-----TAGA--------------A------TGTATATGAATTATGT----A---------------GG--TAC-----TGT--------TTT-------T-ATGGTGTATGTTTGTTGTTATTGT--ATACCAGTTTTTA-ACGAAGAACA------ATTGT---GGAATTGCAAAATCTT-CGTTTTCAT---AAAAATAAG---A--TTTA--TTG-----TTACAAAAAGTCTGA-CATTA-ACTGT-T-CAATAAAATGTAT-TTTAATGTATTTT----------------AATAG-CATTGCTAAT-GTTTCAATATATTCAAAG-GGAAATTTC--C-TGTGATACGGTTTTCGTCGTTATTGGAAAATGGCCGGTACGG-TTTTCGTCAT-TGATTGATACGATATTCGATATTCATTCA-CAAATTGTATTTTTATTTTTTTCAATGAATAACC-TA-TTTT-GCGTAAC-ATATA--------TGA---------------GTC--TTTAA------------AGGATCATATATACATTATA-AAATAgttcttcaatcacaagcatatagtaccggag
gi|9 : atgaatattgtgatTTATGTTTTTGACCGAGACTGTACTCGCTT--TCA----GGTTTTTGAC----------------------A--GAGA-GATAC-------------T---GTC------TTTGACAGA-C-GCATTTTATCAGGGTTACCGACTT--AAGGTATTATTTTTTTATTTTT-CATACAA-TACAC-AC-------GAATATACACAA--TAT-TAGTCATAAAA---GTTACATAAATATA-A----TGTATATCGA-----TGAATTAT----------G------T-------------------A---------------GG--TTT-----TGT--------TTT-------T-ATGGTGTGTGTCTGTTGTTATT--------------------GACAAACT------CTAGT---GGAATTGCAAAAA-----------------AAAATCAG---AACTTGA--GTG-----TT-----AAAT-------TT---ATGTAT-TGATA-----TAT-TTTAATGTCTTTCGC-ATAAA-ACATTTGAATAA-CAATGC-AATAGTTTAATTATATTAGAAT-GTATATTTC--C-TACGATATGGTTTTCAAAGTTATTGGAAAATGGCCGGTATGG-TTTCCG---T-TG-TTGATACGGTATACGATACTCATTCA-GGAA------------TTTGTT-AATGAACAAAA-TATTTTT-GAGTAAT-ACCTA--------TGA---------------ATC--TTTAA------------AGA--TGTATTCAGATTTTA-TAATACA-TTTTGTATTACTT-AACTGCCATTTC---TACATATCATGCAGACA---TATCTTCAAATAGTgtgatttt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): TAGACTGACTGGTGCTATAACAACCAATCATCAAACAGTGTAGACTGACTGGTGCTATAACCTAGTATGTTCTTCAAGCACAATCATACTGTATCTGTTATTGGCCTAGTTTAACAAATTCTGCGTCGTATTTCATTTGGCTCTCCCGTCA
Unaligned ( gi|27 ): TTGTTTCATGCTCTTGCGGGGGTCTTATCTTGTGTTTACGTTCTCGTAATCTACACTTCTCATCGCCTCTATTTGTGACTATGTAATAGGTGGTAAGGTCA
Unaligned ( gi|28 ): TGTGTCTTGTATGGCTTATTATGTTTGGTCCCAACAAAAGATGCATTTCCGGTTGAATTCTTGATTTATTAGCAAATATCATT
Unaligned ( gi|29 ): TCAATGATTTTTAATTTTAACAGAGTCATGGGCTTTCTTAAGAAATGATAAGTATT