lowQualScore                  :                               222222222222222                 111                                     1   1                           44444444                        99999999999         1111111             11111   2            111                                               2222     
lowQualScore                  :          0       44           888888888888888           3     111         7    3         1          5 1   3  0      8  2         66 1 99999999    7     5             33333333333  5  7   6666666         8   55555   2            666   444 2   2 555     2        2                5555     
lowQualScore                  :          .       ..           ...............           .     ...         .    .         .          . .   .  .      .  .         .. . ........    .     .             ...........  .  .   .......         .   .....   .            ...   ... .   . ...     .        .                ....     
lowQualScore                  :          2       44           666666666666666           2     777         3    1         4          7 4   9  1      0  4         44 4 33333333    6     7             33333333333  0  9   3333333         2   88888   2            666   777 9   9 000     9        5                0000     
consensus                     :    TGCCGCCACTGTTACGGCAGAAACAAT---AGAGNTATTCA-GGTCACGGTTAACCATA---CCCGTGCCTGATGTACTCCCATACTAGGGAGGATC-T-GGGNATGTACGTAATTTTAAACACTATTTACAG----NATTTTATTTTT-TAACCACGTATAAATA------TAAATATCTTTTA-----AATTCACTCTAAA----TTTGCATGCGCACACAG--AACA---T-AAA-T---GGTCA-AGTATGACCGAGTTCTGAAAACCTG-A--AGAAG
Reference ( gi|1 )            :    TGCTGCCACTGTTATGGCAGAAACAAT---AGAGCTATTCA-GGTCACGGTTAACCATA---CCCGTGCCTAATGTGCTCCCATACCAGGGAGGATC-T-GGACATGTACATAGTTCTAAACACTATCTACAG-A--AATTTTGTTTTT-TAACCATGTATAAATAATTATATGAACATCTTTTA-----AATTCACTCCAAA----CTTG-ATGCGCACACAG--CACA---T-AAA-T---GGTCA-AGTATGACTGAGTTCTGAAAACCTG-C--AGAAG
gi|4                          :    TGCCGCCACTGTTACAACAGAAACAAT---AAAGCTATTCA-GGTCACGGTTAACCATA---CCCGTGCCTGATGTCCTCCCATACCAGGAAGGATC-T-GGAAATGTACATAATTTTAAACACTATTTACAG-T--GATTTT---------AC----TGTAAAT----------ATATCTTTTT-----AATTCACTCTTAA----TTTGCATGCGCACACAG--GACA---TAAAA-C---AGTCAGAGTA
gi|5                          : accTGCTGCCACTATTACTGCAGAAACAAT---AGTGCTG---------AC--TTA-CCGTA---CCCGTGTCTGATGTGCTCCGATACTAGGGTGAATC-T-GGGTATGTACGTAATTTTAAACACTATTTACAG-T--AATTTCATTTGT-TAACCATGTATAA------ATATGAATATATTTTC-----AATTCACTCTAAT----TTTGCATGCGCACACAG--AACA---
gi|2                          :  ccTGCCGCTACTATTACGGCAGAAAAAAT---A----TA-----------GGTTCCCCATA---CACGTGCTTCATGTATTCCTATACCAGGGAGGATCAT-GGG-AT--------TTC-AAACACTACCTACAG----TATTTCTTTTTT-TAACTATGTATAA------ATATAAATATCTTTTA-----AATTCACTCTAAA----TTTGCATTCGTACACAG--AACA---C-CAA-A---CGTCA-AATATGACCTATTTCTGAAAAC
gi|8                          :   cTACTGCAATTGTTACAGCAGAAACAAT---AGGGATATTCA-GGTCACGGATAACCATA---CCTGTGCCTGATGTAATCCCATACTGAAGAGGATC-TCGGAAA-ACACGTATTTTTAAACACT
gi|3                          :               atcTGGCAGGAAAAATTCTGGACAT-TTCAAGGTCACGGTTAACCATATGACCTGTGTTAGATACGCTCCCATATTACGAAGGATC-T-GAGAATTTACACAAGTTTAAACACTA----CA---------TTGTATTT-TAACCTCGTATAAATA------TAAATAT--TTCA-----A--TCACATTAAA----ATGC-ATGCGCACACAG--AACA---T-AAA-T---GGTCA-AGCCTGATCGAtttcagg
gi|19                         :                                  tgcggcacTCA-GGTCACGGTTAACTATG---CCTGTGGCTGATGTACTACTATA
gi|12                         :                                                                         aTGATGTACTTGCATACTAAGGAGGATC-TGGGAC-TGTACATAA-TCT-----CTATTTAC------CATTTTATTt
gi|14                         :                                                                             TGTACTCCCATAGTAGGCATGAGC-T-GGA-ATGT-CGTAATTTTAAACAC
gi|6                          :                                                                                                        tggCATGTACATAATTTTAAATGCTATATACACTATTACTTTTATTTTT-TAACCATGTATAAATA------TGAATGTCATT-A-----AATTCACTCTATA----TTTG------CACACAT--GACA---T-AAA-T---GATCA-AGTATGACCGAATTCTGAAAACCTG-A--AGAAG
gi|7                          :                                                                                   taaggtcccccacaacatgattcatATGCATATAATTTTAA-CAATATTT-CG-------TGTTGTTTTTCTAATCATGTATAAATA------------TCTTTTT-----AATTCACTAAAAA----TTTGCATATGGACACAG--AACA---T-AAA-T---GGTCA-AGAATGACTGAGTTCTGAAAa
gi|9                          :                                                                                                                                                 aacaTTTT-TAACCACGTATAAATA------TAAACAG-TTTTACCCAAAATTTA----AAGGGTGCTTC-ATGTGCACAGAG--GACA---T-AAA-T---GGTCA-AGTCTGGTCGACTTCTAAAAActt
gi|10                         :                                                                                                                                                                                                          CTAAA----TTTGCATGTGGACACAGGGCATAAAAT-AAA-T---GGTGA-GGTATGATTAAGTTCTGAAAACCTG-A--AGA
gi|15                         :                                                                                                                                                                                                                       -ATGCGCACACA--------------A-T---GGTCA-AGTAAGACCGAGTTTTGAAAACCTG-A--AGAA
gi|20                         :                                                                                                                                                                                                                             tACACAG--AACA---T-AAA-TCGTGGTGA-AGAATGACTGAGTTCTGAAA
gi|18                         :                                                                                                                                                                                                                              ATACAG--AACA---T-AAG-T---GGTCA-AGAATGACCGAGTTCAGAA
gi|11                         :                                                                                                                                                                                                                              ACACAG--GACA---T---------GGTCA-AGCGTGACCGAGTTCTGAATACTTGACAAAGAAGgcttgaag
gi|13                         :                                                                                                                                                                                                                    tcactttaaatCGCAA--TACA---T-GAA-T---GTTCA-GGTATGACCAAGGTCTGAAAATCTA-A--AGAAGta
gi|17                         :                                                                                                                                                                                                                                       ACA---T-AAAAT---GATCA-AATATGACCGAGTTCTGAAAACCTG-A--AGAAGaaga
gi|16                         :                                                                                                                                                                                                                                      ggCA---T-AAA-T---GGTCA-AGTATGACCGACTTCTGAAAATCTG-A--AGAAG





Alignments
lowQualScore                  :                                     111                             111                                                                    1111   1111                     111111                                 1111111111                                                                        
lowQualScore                  :                                     111 4444 99   5           1     000                                   5    5      2                  4 7777   0000  2    5      3      444444  0 2     1   88 0               7777777777      0      77777     2   2 444     2                         777      
lowQualScore                  :                                     ... .... ..   .           .     ...                                   .    .      .                  . ....   ....  .    .      .      ......  . .     .   .. .               ..........      .      .....     .   . ...     .                         ...      
lowQualScore                  :                                     777 5555 00   7           4     000                                   0    9      1                  6 7777   6666  2    1      1      444444  1 6     4   66 1               5555555555      5      11111     7   7 777     7                         888      
consensus                     :          TGCCGCCACTGTTACGGCAGAAACAAT---AGAGCTATTCA-GGTCACGGTTAACCATA---CCCGTGCCTGATGTACTCCCATACTAGGGAGGATC-TGGGAATGTACGTAATTTTAAACACTATTTACAG-NATT----TTATTTTTTAACCACGTATAA------ATATGAATATCTTTTAAATTCACTCTAAATTTG----------CATGCGCACACAG-----AACAT-AAA-T---GGTCA-AGTATGACCGAGTTCTGAAAACCTG---AAGAAG
Reference ( family-583 )      :          TGCCGCCACTGTTACGGCAGAAACAAT---AGAGNTATTCA-GGTCACGGTTAACCATA---CCCGTGCCTGATGTACTCCCATACTAGGGAGGATC-TGGGNATGTACGTAATTTTAAACACTATTTACAG-NATT----TTATTTTTTAACCACGTATAA------ATATAAATATCTTTTAAATTCACTCTAAATTTG----------CATGCGCACACAG-----AACAT-AAA-T---GGTCA-AGTATGACCGAGTTCTGAAAACCTG---AAGAAG
gi|1                          :          TGCTGCCACTGTTATGGCAGAAACAAT---AGAGCTATTCA-GGTCACGGTTAACCATA---CCCGTGCCTAATGTGCTCCCATACCAGGGAGGATC-TGGACATGTACATAGTTCTAAACACTATCTACAGAAATT----TTGTTTTTTAACCATGTATAAATAATTATATGAACATCTTTTAAATTCACTCCAAACTTG-----------ATGCGCACACAG-----CACAT-AAA-T---GGTCA-AGTATGACTGAGTTCTGAAAACCTG---CAGAAG
gi|10                         :                                                                                                                                                                                                          CTAAATTTG----------CATGTGGACACAGGGCATAAAAT-AAA-T---GGTGA-GGTATGATTAAGTTCTGAAAACCTG---AAGA
gi|11                         :                                                                                                                                                                                                     TCACTTTAAAT--------------------ACACAG-----GACAT---------GGTCA-AGCGTGACCGAGTTCTGAATACTTGACAAAGAAG
gi|12                         :                                                                                TGATGTACTTGCATACTAAGGAGGATC-TGGGACTGTACATAATCT------CTATTTAC---CATT----TTATTta
gi|13                         :                                                                                                                                                                                                                                                ACAT-GAA-T---GTTCA-GGTATGACCAAGGTCTGAAAATCTA---AAGAAG
gi|14                         :                                                                          cgcaatTGGTGTACTCCCATAGTAGGCATGAGC-T-GGAATGT-CGTAATTTTAAACACaaga
gi|15                         :                                                                                                                                                                                                                              ATGCGCACACA--------------A-T---GGTCA-AGTAAGACCGAGTTTTGAAAACCTG---AAGAA
gi|16                         :                                                                                                                                                                                                                                                tCAT-AAA-T---GGTCA-AGTATGACCGACTTCTGAAAATCTG---AAGAAG
gi|17                         :                                                                                                                                                                                                                                       gtG-----GACAT-AAAAT---GATCA-AATATGACCGAGTTCTGAAAACCTG---AAGAAGaag
gi|18                         :                                                                                                                                                                                                                                    ATACAG-----AACAT-AAG-T---GGTCA-AGAATGACCGAGTTCAG-AAGCTTG---AAG
gi|19                         :                                                TCA-GGTCACGGTTAACTATG---CCTGTGGCTGATGTACTACTATA
gi|2                          :         aTGCCGCTACTATTACGGCAGAAAAAAT---A----TA-----------GGTTCCCCATA---CACGTGCTTCATGTATTCCTATACCAGGGAGGATCATGGG----------ATTTCAAACACTACCTACAG-TATT----TCTTTTTTTAACTATGTATAA------ATATAAATATCTTTTAAATTCACTCTAAATTTG----------CATTCGTACACAG-----AACAC-CAA-A---CGTCA-AATATGACCTATTTCTGAAAACt
gi|20                         :                                                                                                                                                                                                                                   cACACAG-----AACAT-AAA-TCGTGGTGA-AGAATGACTGAGTTCTGAAA
gi|3                          :                         GGCAGGAAAAATTCTGGACAT-TTCAAGGTCACGGTTAACCATATGACCTGTGTTAGATACGCTCCCATATTACGAAGGATC-TGAGAATTTACACAAGTTTAAACACTA--------CATT----GTATTTT--AACCTCGTATAA------ATATAAATAT--TTCAA--TCACATTAAAAT-G----------CATGCGCACACAG-----AACAT-AAA-T---GGTCA-AGCCTGATCGA
gi|4                          : tgcggcactTGCCGCCACTGTTACAACAGAAACAAT---AAAGCTATTCA-GGTCACGGTTAACCATA---CCCGTGCCTGATGTCCTCCCATACCAGGAAGGATC-TGGAAATGTACATAATTTTAAACACTATTTACAG---------TGATTTT---AC----TGTAA------AT----ATATCTTTTTAATTCACTCTTAATTTG----------CATGCGCACACAG-----GACATAAAA-C---AGTCAGAGTA
gi|5                          :       accTGCTGCCACTATTACTGCAGAAACAAT---AGTGCTG---------AC--TTA-CCGTA---CCCGTGTCTGATGTGCTCCGATACTAGGGTGAATC-TGGGTATGTACGTAATTTTAAACACTATTTACAGTAATT----TCATTTGTTAACCATGTATAA------ATATGAATATATTTTCAATTCACTCTAATTTTG----------CATGCGCACACAG-----AACA
gi|6                          :                                                                                                               ccATGTACATAATTTTAAATGCTATATACAC-TATTACTTTTATTTTTTAACCATGTATAA------ATATGAATGTCATT-AAATTCACTCTATATTTG----------CA------CACAT-----GACAT-AAA-T---GATCA-AGTATGACCGAATTCTGAAAACCTG---AAGAAG
gi|7                          :                                                                                       taaggtcccccacaacatgattcatcATGCATATAATTTTAA-CAATATTT-C-G-TGTT----GT-TTTTCTAATCATGTATA------------AATATCTTTTTAATTCACTAAAAATTTG----------CATATGGACACAG-----AACAT-AAA-T---GGTCA-AGAATGACTGAGTTCTGAAAa
gi|8                          :      aacaTACTGCAATTGTTACAGCAGAAACAAT---AGGGATATTCA-GGTCACGGATAACCATA---CCTGTGCCTGATGTAATCCCATACTGAAGAGGATC-TCGGAAAACACGTATTTTTAAACACT-TTT-CAG-ctt
gi|9                          :                                                                                                                                                        atcTTTTTAACCACGTATAA------ATATAAACAGTTTT-------ACCCAAAATTTAAAGGGTGCTTCATGTGCACAGAG-----GACAT-AAA-T---GGTCA-AGTCTGGTCGACTTCTAAAAAg





Alignments
lowQualScore                  :                                     111                             111                                                                    1111   1111                     111111                                 1111111111                                                                        
lowQualScore                  :                                     111 3333 99   5           1     000                                   5           2                  4 7777   0000  2    5      3      444444    5     1   88 0               7777777777      0      77777     2   2 444     2                         777      
lowQualScore                  :                                     ... .... ..   .           .     ...                                   .           .                  . ....   ....  .    .      .      ......    .     .   .. .               ..........      .      .....     .   . ...     .                         ...      
lowQualScore                  :                                     777 7777 00   7           4     000                                   0           1                  6 7777   6666  2    1      1      444444    4     4   66 1               5555555555      5      11111     7   7 777     7                         888      
consensus                     :          TGCCGCCACTGTTACGGCAGAAACAAT---AGAGCTATTCA-GGTCACGGTTAACCATA---CCCGTGCCTGATGTACTCCCATACTAGGGAGGATC-TGGGAATGTACGTAATTTTAAACACTATTTACAG-NATT----TTATTTTTTAACCACGTATAA------ATATGAATATCTTTTAAATTCACTCTAAATTTG----------CATGCGCACACAG-----AACAT-AAA-T---GGTCA-AGTATGACCGAGTTCTGAAAACCTG---AAGAAG
Reference ( family-583 )      :          TGCCGCCACTGTTACGGCAGAAACAAT---AGAGCTATTCA-GGTCACGGTTAACCATA---CCCGTGCCTGATGTACTCCCATACTAGGGAGGATC-TGGGAATGTACGTAATTTTAAACACTATTTACAG-NATT----TTATTTTTTAACCACGTATAA------ATATGAATATCTTTTAAATTCACTCTAAATTTG----------CATGCGCACACAG-----AACAT-AAA-T---GGTCA-AGTATGACCGAGTTCTGAAAACCTG---AAGAAG
gi|1                          :          TGCTGCCACTGTTATGGCAGAAACAAT---AGAGCTATTCA-GGTCACGGTTAACCATA---CCCGTGCCTAATGTGCTCCCATACCAGGGAGGATC-TGGACATGTACATAGTTCTAAACACTATCTACAGAAATT----TTGTTTTTTAACCATGTATAAATAATTATATGAACATCTTTTAAATTCACTCCAAACTTG-----------ATGCGCACACAG-----CACAT-AAA-T---GGTCA-AGTATGACTGAGTTCTGAAAACCTG---CAGAAG
gi|10                         :                                                                                                                                                                                                          CTAAATTTG----------CATGTGGACACAGGGCATAAAAT-AAA-T---GGTGA-GGTATGATTAAGTTCTGAAAACCTG---AAGA
gi|11                         :                                                                                                                                                                                                     TCACTTTAAAT--------------------ACACAG-----GACAT---------GGTCA-AGCGTGACCGAGTTCTGAATACTTGACAAAGAAG
gi|12                         :                                                                                TGATGTACTTGCATACTAAGGAGGATC-TGGGACTGTACATAATCT------CTATTTAC---CATT----TTATTta
gi|13                         :                                                                                                                                                                                                                                                ACAT-GAA-T---GTTCA-GGTATGACCAAGGTCTGAAAATCTA---AAGAAG
gi|14                         :                                                                          cgcaatTGGTGTACTCCCATAGTAGGCATGAGC-T-GGAATGT-CGTAATTTTAAACACaaga
gi|15                         :                                                                                                                                                                                                                              ATGCGCACACA--------------A-T---GGTCA-AGTAAGACCGAGTTTTGAAAACCTG---AAGAA
gi|16                         :                                                                                                                                                                                                                                                tCAT-AAA-T---GGTCA-AGTATGACCGACTTCTGAAAATCTG---AAGAAG
gi|17                         :                                                                                                                                                                                                                                       gtG-----GACAT-AAAAT---GATCA-AATATGACCGAGTTCTGAAAACCTG---AAGAAGaag
gi|18                         :                                                                                                                                                                                                                                    ATACAG-----AACAT-AAG-T---GGTCA-AGAATGACCGAGTTCAG-AAGCTTG---AAG
gi|19                         :                                                TCA-GGTCACGGTTAACTATG---CCTGTGGCTGATGTACTACTATA
gi|2                          :         aTGCCGCTACTATTACGGCAGAAAAAAT---A----TA-----------GGTTCCCCATA---CACGTGCTTCATGTATTCCTATACCAGGGAGGATCATGGGA----------TTTCAAACACTACCTACAG-TATT----TCTTTTTTTAACTATGTATAA------ATATAAATATCTTTTAAATTCACTCTAAATTTG----------CATTCGTACACAG-----AACAC-CAA-A---CGTCA-AATATGACCTATTTCTGAAAACt
gi|20                         :                                                                                                                                                                                                                                   cACACAG-----AACAT-AAA-TCGTGGTGA-AGAATGACTGAGTTCTGAAA
gi|3                          :                         GGCAGGAAAAATTCTGGACAT-TTCAAGGTCACGGTTAACCATATGACCTGTGTTAGATACGCTCCCATATTACGAAGGATC-TGAGAATTTACACAAGTTTAAACACTA--------CATT----GTATTTT--AACCTCGTATAA------ATATAAATAT--TTCAA--TCACATTAAAAT-G----------CATGCGCACACAG-----AACAT-AAA-T---GGTCA-AGCCTGATCGA
gi|4                          : tgcggcactTGCCGCCACTGTTACAACAGAAACAAT---AAAGCTATTCA-GGTCACGGTTAACCATA---CCCGTGCCTGATGTCCTCCCATACCAGGAAGGATC-TGGAAATGTACATAATTTTAAACACTATTTACAG---------TGATTTT---AC----TGTAA------AT----ATATCTTTTTAATTCACTCTTAATTTG----------CATGCGCACACAG-----GACATAAAA-C---AGTCAGAGTA
gi|5                          :       accTGCTGCCACTATTACTGCAGAAACAAT---AGTGCTG---------AC--TTA-CCGTA---CCCGTGTCTGATGTGCTCCGATACTAGGGTGAATC-TGGGTATGTACGTAATTTTAAACACTATTTACAGTAATT----TCATTTGTTAACCATGTATAA------ATATGAATATATTTTCAATTCACTCTAATTTTG----------CATGCGCACACAG-----AACA
gi|6                          :                                                                                                               ccATGTACATAATTTTAAATGCTATATACAC-TATTACTTTTATTTTTTAACCATGTATAA------ATATGAATGTCATT-AAATTCACTCTATATTTG----------CA------CACAT-----GACAT-AAA-T---GATCA-AGTATGACCGAATTCTGAAAACCTG---AAGAAG
gi|7                          :                                                                                      taaggtcccccacaacatgattcatcAATGCATATAATTTTAA-CAATATTT-C-G-TGTT----GT-TTTTCTAATCATGTATAA------ATAT------CTTTTTAATTCACTAAAAATTTG----------CATATGGACACAG-----AACAT-AAA-T---GGTCA-AGAATGACTGAGTTCTGAAAa
gi|8                          :       aacTACTGCAATTGTTACAGCAGAAACAAT---AGGGATATTCA-GGTCACGGATAACCATA---CCTGTGCCTGATGTAATCCCATACTGAAGAGGATC-TCGGAAAACACGTATTTTTAAACACT-TTT-CAG-ctt
gi|9                          :                                                                                                                                                        atcTTTTTAACCACGTATAA------ATATAAACAGTTTT-------ACCCAAAATTTAAAGGGTGCTTCATGTGCACAGAG-----GACAT-AAA-T---GGTCA-AGTCTGGTCGACTTCTAAAAAg


blockSeqs                     :                                     TCT GACA AT   A           A     TGA                                   A           A                  A AGTA   ACTT  A    T      T      .         A     C   TA                 AAGGGTGCTT             GGCAT     A   A CGT     G                         ACA
blockSeqs                     :                                     .   AAGC AT   .           C     .                                     .           G                  A AGT    .     T    T      C      .         A     C   CA                 .                      .         .   . .       .                         .  
blockSeqs                     :                                     .   GTGC A    .           A     .                                     .           A                  A ACT    .     A    T      T      .         G     A   TT                 .                      .         .   . .       .                         .  
blockSeqs                     :                                     .   GGGA T    .           A     .                                     .           A                  A AG     .     A    C      T      .         G     C   TC                 .                      .         .   . .       .                         .  
blockSeqs                     :                                     .   .    G    .           A     .                                     .           G                  A GT     .     A    T      T      .         A     C   TT                 .                      .         .   . .       .                         .  
blockSeqs                     :                                                   .           .     .                                     .           A                  . C      .     A    .      C      .         .     T   A                  .                      .         .   . .       .                         .  
blockSeqs                     :                                                                                                           .           A                  . C      .     .    .      .      .         .     .   .                  .                      .         .   . .       .                         .  
blockSeqs                     :                                                                                                                       G                  .                                                                        .                      .         .   . .       .                         .  
blockSeqs                     :                                                                                                                       .                                                                                           .                      .         .   . .       .                            
blockSeqs                     :                                                                                                                                                                                                                                          .         .   . .       .                            
blockSeqs                     :                                                                                                                                                                                                                                          .         .   . .       .                            
blockSeqs                     :                                                                                                                                                                                                                                          .         .   . .       .                            
blockSeqs                     :                                                                                                                                                                                                                                          .         .   . .       .                            
blockSeqs                     :                                                                                                                                                                                                                                                    .   . .       .                            


blockSeqCons                  :                                              N*                                                                                            AGT*                            ******
originalCons                  :          TGCCGCCACTGTTACGGCAGAAACAAT---AGAGCTATTCA-GGTCACGGTTAACCATA---CCCGTGCCTGATGTACTCCCATACTAGGGAGGATC-TGGGAATGTACGTAATTTTAAACACTATTTACAG-NATT----TTATTTTTTAACCACGTATAA------ATATGAATATCTTTTAAATTCACTCTAAATTTG----------CATGCGCACACAG-----AACAT-AAA-T---GGTCA-AGTATGACCGAGTTCTGAAAACCTG---AAGAAG
finalCons                     :          TGCCGCCACTGTTACGGCAGAAACAAT---AGAGCTN-TCA-GGTCACGGTTAACCATA---CCCGTGCCTGATGTACTCCCATACTAGGGAGGATC-TGGGAATGTACGTAATTTTAAACACTATTTACAGT-ATT----TTATTTTTTAACCACGTATAA------ATATGAATATCTTTTAAATTCACTCTAAATTTG----------CATGCGCACACAG-----AACAT-AAA-T---GGTCA-AGTATGACCGAGTTCTGAAAACCTG---AAGAAG





Alignments
lowQualScore                  :                                     111    22222222                 111                                                                    11111   1111                     111111                                 1111111111                                                                        
lowQualScore                  :                                     111    44444444      0    1     000                                   5           2                2 4 66666   0000  2    2      3      444444    5     1   88 0               7777777777      0      77777     2   2 444     2                         777      
lowQualScore                  :                                     ...    ........      .    .     ...                                   .           .                . . .....   ....  .    .      .      ......    .     .   .. .               ..........      .      .....     .   . ...     .                         ...      
lowQualScore                  :                                     777    33333333      7    4     000                                   0           1                7 6 55555   6666  2    0      1      444444    4     4   66 1               5555555555      5      11111     7   7 777     7                         888      
consensus                     :          TGCCGCCACTGTTACGGCAGAAACAAT---AGAGCTATTCA-GGTCACGGTTAACCATA---CCCGTGCCTGATGTACTCCCATACTAGGGAGGATC-TGGGAATGTACGTAATTTTAAACACTATTTACAG-T-ATT----TTATTTTTTAACCACGTATAA------ATATGAATATCTTTTAAATTCACTCTAAATTTG----------CATGCGCACACAG-----AACAT-AAA-T---GGTCA-AGTATGACCGAGTTCTGAAAACCTG---AAGAAG
Reference ( family-583 )      :          TGCCGCCACTGTTACGGCAGAAACAAT---AGAGCTNT-CA-GGTCACGGTTAACCATA---CCCGTGCCTGATGTACTCCCATACTAGGGAGGATC-TGGGAATGTACGTAATTTTAAACACTATTTACAG-T-ATT----TTATTTTTTAACCACGTATAA------ATATGAATATCTTTTAAATTCACTCTAAATTTG----------CATGCGCACACAG-----AACAT-AAA-T---GGTCA-AGTATGACCGAGTTCTGAAAACCTG---AAGAAG
gi|1                          :          TGCTGCCACTGTTATGGCAGAAACAAT---AGAGCTATTCA-GGTCACGGTTAACCATA---CCCGTGCCTAATGTGCTCCCATACCAGGGAGGATC-TGGACATGTACATAGTTCTAAACACTATCTACAGAA-ATT----TTGTTTTTTAACCATGTATAAATAATTATATGAACATCTTTTAAATTCACTCCAAACTTG-----------ATGCGCACACAG-----CACAT-AAA-T---GGTCA-AGTATGACTGAGTTCTGAAAACCTG---CAGAAG
gi|10                         :                                                                                                                                                                                                           CTAAATTTG----------CATGTGGACACAGGGCATAAAAT-AAA-T---GGTGA-GGTATGATTAAGTTCTGAAAACCTG---AAGA
gi|11                         :                                                                                                                                                                                                      TCACTTTAAAT--------------------ACACAG-----GACAT---------GGTCA-AGCGTGACCGAGTTCTGAATACTTGACAAAGAAG
gi|12                         :                                                                                TGATGTACTTGCATACTAAGGAGGATC-TGGGACTGTACATAATCT------CTATTTAC---C-ATT----TTATTta
gi|13                         :                                                                                                                                                                                                                                                 ACAT-GAA-T---GTTCA-GGTATGACCAAGGTCTGAAAATCTA---AAGAAG
gi|14                         :                                                                          cgcaatTGGTGTACTCCCATAGTAGGCATGAGC-T-GGAATGT-CGTAATTTTAAACACaaga
gi|15                         :                                                                                                                                                                                                                               ATGCGCACACA--------------A-T---GGTCA-AGTAAGACCGAGTTTTGAAAACCTG---AAGAA
gi|16                         :                                                                                                                                                                                                                                                 tCAT-AAA-T---GGTCA-AGTATGACCGACTTCTGAAAATCTG---AAGAAG
gi|17                         :                                                                                                                                                                                                                                        gtG-----GACAT-AAAAT---GATCA-AATATGACCGAGTTCTGAAAACCTG---AAGAAGaag
gi|18                         :                                                                                                                                                                                                                                     ATACAG-----AACAT-AAG-T---GGTCA-AGAATGACCGAGTTCAG-AAGCTTG---AAG
gi|19                         :                                               T-CA-GGTCACGGTTAACTATG---CCTGTGGCTGATGTACTACTATA
gi|2                          :         aTGCCGCTACTATTACGGCAGAAAAAAT---ATAG---------------GTTCCCCATA---CACGTGCTTCATGTATTCCTATACCAGGGAGGATCATGGGA----------TTTCAAACACTACCTACAG-T-ATT----TCTTTTTTTAACTATGTATAA------ATATAAATATCTTTTAAATTCACTCTAAATTTG----------CATTCGTACACAG-----AACAC-CAA-A---CGTCA-AATATGACCTATTTCTGAAAACt
gi|20                         :                                                                                                                                                                                                                                    cACACAG-----AACAT-AAA-TCGTGGTGA-AGAATGACTGAGTTCTGAAA
gi|3                          :                         GGCAGGAAAAATTCTGGACATTT-CAAGGTCACGGTTAACCATATGACCTGTGTTAGATACGCTCCCATATTACGAAGGATC-TGAGAATTTACACAAGTTTAAACACTAC---------ATT----GTATTTT--AACCTCGTATAA------ATATAAATAT--TTCAA--TCACATTAAAAT-G----------CATGCGCACACAG-----AACAT-AAA-T---GGTCA-AGCCTGATCGA
gi|4                          : tgcggcactTGCCGCCACTGTTACAACAGAAACAAT---AAAGCTATTCA-GGTCACGGTTAACCATA---CCCGTGCCTGATGTCCTCCCATACCAGGAAGGATC-TGGAAATGTACATAATTTTAAACACTATTTACAG-TGATT----TTAC------------TGTAA------AT----ATATCTTTTTAATTCACTCTTAATTTG----------CATGCGCACACAG-----GACATAAAA-C---AGTCAGAGTA
gi|5                          :       accTGCTGCCACTATTACTGCAGAAACAAT---AGTGCTG---------AC--TTA-CCGTA---CCCGTGTCTGATGTGCTCCGATACTAGGGTGAATC-TGGGTATGTACGTAATTTTAAACACTATTTACAG-TAATT----TCATTTGTTAACCATGTATAA------ATATGAATATATTTTCAATTCACTCTAATTTTG----------CATGCGCACACAG-----AACA
gi|6                          :                                                                                                               ccATGTACATAATTTTAAATGCTATATACAC-T-ATTACTTTTATTTTTTAACCATGTATAA------ATATGAATGTCATT-AAATTCACTCTATATTTG----------CA------CACAT-----GACAT-AAA-T---GATCA-AGTATGACCGAATTCTGAAAACCTG---AAGAAG
gi|7                          :                                                                                      taaggtcccccacaacatgattcatcAATGCATATAATTTTAA-CAATATTT-C-G-T-GTT----GT-TTTTCTAATCATGTATAA------ATAT------CTTTTTAATTCACTAAAAATTTG----------CATATGGACACAG-----AACAT-AAA-T---GGTCA-AGAATGACTGAGTTCTGAAAa
gi|8                          :       aacTACTGCAATTGTTACAGCAGAAACAAT---AGGGATATTCA-GGTCACGGATAACCATA---CCTGTGCCTGATGTAATCCCATACTGAAGAGGATC-TCGGAAAACACGTATTTTTAAACACT-TTT-CAG-ctt
gi|9                          :                                                                                                                                                         atcTTTTTAACCACGTATAA------ATATAAACAGTTTT-------ACCCAAAATTTAAAGGGTGCTTCATGTGCACAGAG-----GACAT-AAA-T---GGTCA-AGTCTGGTCGACTTCTAAAAAg