lowQualScore : 1111111 1111111111111111111111111111111
lowQualScore : 1 1 88888 1 7777777777777 111111 1 33333333 111 11111 11 11 333 11111 0000000 11111 2 111111 1111111111111111111111111111111 11111 11 22
lowQualScore : 7 2 6 33333 3 6 1 5 1 5 8 2222222222222 5 2 2 8 5 6 222222 6 4 777 3 55 55 3 33333333 333 33333 0 33 2 11 999 333 1 00000 5555555 6 4 22222 7 4 666 0 5 444444 1 1 0 0000000000000000000000000000000 0 22 33333 4 11 99 4 6 4
lowQualScore : . . . ..... . . . . . . . ............. . . . . . . ...... . . ... . .. .. . ........ ... ..... . .. . .. ... ... . ..... ....... . . ..... . . ... . . ...... . . . ............................... . .. ..... . .. .. . . .
lowQualScore : 0 0 0 55555 2 7 0 7 4 2 2 6666666666666 0 0 5 8 0 0 888888 6 1 888 6 00 00 6 44444444 666 44444 5 55 9 55 222 111 1 66666 3333333 0 1 44444 8 0 333 8 0 333333 6 4 5 8888888888888888888888888888888 1 11 22222 4 22 33 4 0 5
consensus : CTTCCATTGGTTACTNCCACCAACCATGCGTGAAAGCCGTAGC---AAAATATAGTCCAATCAAGTTACC-CCAGGACC-CGAAACTAAAAGTAACATTTGGTTTGTAAGTGGTTNTGTGGTCCTCCATCACACCTC--AGTTACCCCAGGACC-CGAAACTAANAGTAACATTTGGTTTGTAAGTGGTTTT-GCGATCCTCCATTACACCTC------TATACAATATA---AAAAGTTTAGGAAAA-TCGAAGGAT--ATGAAA--G-TGTTTTTTTTT-TTCATGTTTTT-TATCCT--AANGGTTTTCATAATA-TACCGTC-ATCAAAAAA-A-GTAGATAGTACGAATGATA--T-TATTTTTCTG------TGCCCCAGTTTCGACTT---GCTAAACAGTACTAAAT-GTTTT-A-ACGAGTAAACAACATANTATTACACAATTTTAT-GTAAG--AA-T-T------T------TTTTTCGAATTTCGA-TGAAATAACAT-AAAAAAGAATAACAAATTAC-NCCACCCACTTATTTTATTTAAGAAGTATG
Reference ( gi|1 ) : CTTCCAATGGTTACTCCCACCAACCATACGTGAAAGTCATAGTGAAAAAATATAGTCCAATCAAGTTACC-CAAGGACC-CGAGACTAAAAGTAACATTTGGTTTGTAAGTGGTTGTGTGGTCTTCCATCACACTTCNNNNNNNNNNCAGGACC-CGAGACTAACAGTAACATTTGGTTTGTAAGTGGTTGT-GTGATCCTCCATTACATCTC------TATATATTATA---AAAAGTTTAGGAAAA-TCGAAGGAT--ATGAAA--G-TGTTTTTTTTTCTTCATGTTTTT-TATCCT--GGTGGTTTTCATAATA-AATCATA-ATCAAAAAAAAAGTAGATAGTACGAATGATA--T-TATTTTTCTGCCACAATGCCCCGGTTTTGACAT---GCTAAACAGTGCTAAAT-GTTTT-A-ACAAGTAACCAACATAATATAACACAATTTTAT-ATATG--AACT-TT-----T------TTTTTCGAATTTCGA-CGACATGACAT-AAAAAAGAATAACAAATTACTCCCACCCACTTATCTTGTTTAAAAAGTATG
gi|2 : CTTCCATTGGTTACTGCCACCAACCATGCGTGA
gi|14 : aCTTCCATTGGTTACTAACACCAACCATGCGTGAtaacaacagggaagcgctgtgttattaacgttgctgttagaaaagccatagcaattatagtccaaccaagttaccccaggacccgagactaacagtaacatttggtttgtacgtggttgtgtggcattccatcacacctacgtacaatataaaaagtcaggaaaaatcaaaggatatgaaagtgtttttcttttcatgttttcataacgtaccgtaatcaaaagagtagaaagtacgaatgatatcatttttctgtgccccagtttcgacatataactacacaattttatgtaagaaaaaataatagtctttcgaatttcgataacataacataaaaagaatgacaaattatgccactcacttattttatttaagaagtatgaactaataatgagttaaaacggaatgaagaacatcacaatgtattgaagtttctcgacatagatatcttgttgca
gi|10 : taCTTCCATTGGTTACTTCCACCAACCATGCGTGAtaacaaaagggcggcactatgttaaatgttgctgttagaaaagtcgtagaaaatatagtccaatcaagtaaccccaggacccgagactaacagtaacatttggtttgtaagtggttgtgtggtcttccatcacacct
gi|2 : agcctgaaaggctgccagtagtagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAGCCATAGC----AATTATAGTCCAACCAAGTTACC-CCAGGACC-CGAGACTAACAGTAACATTTGGTTTGTACGTGGTTGTGTGGCATTCCATCACACCTtaacaaaaggtaggcactgtgttaaatgttgctgtcag
gi|14 : acttccattggttactgccaccaaccatgcgtgataacaacagggaagcgctgtgttattaacgttgctgttagaAAAGTCGTAG----AAAATATAGTCCAATCAAGTAACC-CCAGGACC-CGAGACTAACAGTAACATTTGGTTTGTAAGTGGTTGTGTGGTCTTCCATCACACCTacgtacaatataaaaagtcaggaaaaatcaaaggatatgaaagtgtttttcttttcatgttttcataacgtaccgtaatcaaaagagtagaaagtacgaatgatatcatttttctgtgccccagtttcgacatataactacacaattttatgtaagaaaaaataatagtctttcgaatttcgataacataacataaaaagaatgacaaattatgccactcacttattttatttaagaagtatgaactaataatgagttaaaacggaatgaagaacatcacaatgtattgaagtttctcgacatagatatcttgttgca
gi|3 : tacttccattggttactaacaccaaccatgcgtgataacaaaagggcggcactatgttaaatgttgctgttagaATGTAGTCCAATCAAGTTACC-CCAGGACC-CGAAACTAAAAGTAACATTTGG
gi|13 : ctaaaacttaaacctggttataacttCAGTCA-GTAACCACAAGG-CC-AGAAGCTAAAAGTAACATTTGGTTTGTAAGTGGTTTTGTGATCGTCCATTACACCTCatctatacaataaaaatagtttaggaaaatcgaaggatatgaaagttgtttttttccctgtttttattctaatggttttcataatatactatcatcaaagaagtggatagtacaaatgataaatatatttttctatacctcagtttagacttgctaaacagaactaaatgtttaaacgagtaaacaacatagcattacacaattgtatgacagaatgtgtttttgaattttgattaaaataacatgaaaaagattaacaaattacctcacccacttattttatttaagaagtatgaaccgataatgagtttcaaatagtagatgtgtataatttaaatgaaagctagcag
gi|4 : gttgATCACATTACC-TCAAGACCTCGAACCTAAAAGCAACATTTAGTTTGCAAGTGGTTTTGCGATTCTCCATTACACCTCtatacattataacaagtttaggaaagtctaaggatatcatgttgtgttttttttttatctttttatcgtaagggttgttataatataacattataaaag
gi|18 : ttaaaaatccaacactggctatttatgtgcATCAAGTTACC-CCAGGACC-CGAAACTAAAAGTAACATTTGGTTTATAAGTGGTTTTGATATCCTTCATTACACCTCtaaataatatatttaacaatttaggacagtcgaagaatatgaaagtgttgtttattttatattttttatcctaagggttttcataatgtaccatcattaaaaaagtatttttctgtgccccaggttcgactaactaaacagtactaaatgttttaggaataaaacaacatattattgcccaattgtatgcaagaaaagaatacaaattacatcacccactcattttatttaaaagtattaaccaataatgagttacagatagtagatatgtttacttgtaattgatgctggcagagcat
gi|7 : CC-CGAAACTAACAGTAACATTTGGTTTGTAAGtttagaatataaaagtttaggaaaattgaaagatatgaaag
gi|3 : aaccatgccccacacCTAAAACTTAAACCTGGTT-ATAACT---TATGTAGTC--CAATCA--------AGTTACCCCAGGACC-CGAAACTAAAAGTAACATTTGGgtcgaagtatatgaaagcgtttttctttttaatgttttcataacgtaccgtaatatatagtacatatataggtatatagtacaaatgatagtatttttctgtgccccagtttcgacatattactacacaattttatgcaagaaaaaataaaaatcttacgaatttcgataaaataacataaaaagaatgacaaactatgccacgctcttattttatttaagaagtatgaaccaatatttggttaaaacggaatgaagaacatctcaatgcattgacgtttctcgacataggtatcttgttgca
gi|4 : CATCACATT--------ACCTCAAGACCTCGAACCTAAAAGCAACATTTAGTTTGCAAGTGGTTTT-GCGATTCTCCATTACACCTC------TAAATAATATATTTAACAATTTAGGACAG-TCGAAGAAT--ATGAAA--G-TGTTGTTTATTTT--ATATTTTT-TATCCT--AAGGGTTTTCATAATG-TACCATC-ATTAAAAAAG-------------------------TATTTTTCTG------TGCCCCAGGTTCGACTA---ACTAAACAGTACTAAAT-GTTTT-A-GGAA-TAA--AAC-------AACATA---TTAT----TG-------------------------CCCAATT-------GTATG-CA--AGAAAAGAATA-CAAATTAC-ATCACCCACTCATTTTATTT-AAAAGTATatctatacaataaaaatagtttaggaaaatcgaaggatatgaaagttgtttttttccctgtttttattctaatggttttcataatatactatcatcaaagaagtggatagtacaaatgataaatatatttttctatacctcagtttagacttgctaaacagaactaaatgtttaaacgagtaaacaacatagcattacacaattgtatgacagaatgtgtttttgaattttgattaaaataacatgaaaaagattaacaaattacctcacccacttattttatttaagaagtatgaaccgataatgagtttcaaatagtagatgtgtataatttaaatgaaagctagcag
gi|2 : ttaaaaatccaacactggctatttatgtgCAGGACC-CGAGACTAACAGTAACATTTGGTTTGTACGTGGTTGT-GTGGCATTCCATCACACCTA------CGTACAATATA---AAAAGTCAGGAAAAA-TCAAAGGAT--ATGAAA--G-TGTTTTTCTTT--TCATGTTTT-------------------CATAACG-TACCGTA-ATCAAAAGA---GTAGAAAGTACGAATGATA--T-CATTTTTCTG------TGCCCCAGTTTCGACATATAACTACACAATTTT--AT-GT--------AAG-AA--AAAATAAT-------AGTCTT-T----CG--AA-------------------TTTC-------GA-TAACATAACAT--AAAAAGAATGACAAATTA-TGCCACTCACTTATTTTATTTAAGAAGTATGtaaccaataatgagttacagatagtagatatgtttacttgtaattgatgctggcagagcat
gi|14 : acttccattggttactgccaccaaccatgcgtgataacaacagggaagcgctgtgttattaacgttgctgttagaaaagccatagcaattatagtccaaccaagttacccCAGGACC-CGAGACTAACAGTAACATTTGGTTTGTAAGTGGTTGT-GTGGTCTTCCATCACACCTaactaataatgagttaaaacggaatgaagaacatcacaatgtattgaagtttctcgacatagatatcttgttgca
gi|13 : tacttccattggttactaacaccaaccatgcgtgataacaaaagggcggcactatgttaaatgttgctgttagaaaagtcgtagaaaatatagtccaatcaagtaacccCAAGGCC-AGAAGCTAAAAGTAACATTTGGTTTGTAAGTGGTTTT-GTGATCGTCCATTACACCTC------TATACATTATA---ACAAGTTTAGGAAAG-TCTAAGGAT--ATCATGTTG-TGTTTTTTTTTTATC----TTTT-TATCGT--AAGGGTTGTTATAATA-TAACATT-ATAAAA
gi|18 : gttgcagtcagtaaccaCAGGACC-CGAAACTAAAAGTAACATTTGGTTTATAAGTGGTTTT-GATATCCTTCATTACACCTC------TTTAGAATAT----AAAAGTTTAGGAAAA-TTGAAAGAT--ATGAAA--G-g
gi|8 : atcaagttacccCAGAACC-CGAAACTAACGGTTACATTCGGATTTTAAGTGTTTTTAGCGGCCCTTCATTACACCACAGTGATTATACAATATA---AACAGTTTAGGAAAA-TCGAAAGAT--ATGAAA--G-TGT
gi|7 : CC-CGAAACTAACAGTAACATTTGGTTTGTAAGgtgtgtgtttgggggttgttgttgttttttgttgtttaattattttttgtgtgtttttttaggggtgggggggtcatgtgttatcctggtggttttcatgagatactcgcatcatacaagcagatagtatggatgatctcatttgtatgtgccctagttttgacttgctaaacagcactaaatgttttaaataactaaacaacattttattacataattgtatgt
gi|15 : aaccatgccccacacGTGGTTTT-GTGATCGTCCCTTACACATC------TATACAATATA---AAAAGTTTATGAAAA-TCAGAGGAT--ATGAAA--G-TGATTTTTAATGTTT---TTTTT-TATCCT--AATGATTCTCATAAT--AATCGTG-ATCAAgtcgaagtatatgaaagcgtttttctttttaatgttttcataacgtaccgtaatatatagtacatatataggtatatagtacaaatgatagtatttttctgtgccccagtttcgacatattactacacaattttatgcaagaaaaaataaaaatcttacgaatttcgataaaataacataaaaagaatgacaaactatgccacgctcttattttatttaagaagtatgaaccaatatttggttaaaacggaatgaagaacatctcaatgcattgacgtttctcgacataggtatcttgttgca
gi|6 : gGGTTTC-GTGATCCCCAATTAAACCTC------TATACAATGTA---AAAAGTTTTGGAAAA-TCGTAGATT--ATGAAA--GTTGTTT-------TTCATA-TTTT-TATCCT--AAGGGTTTTCATCATA-TACCATC-ATT----AAAAAGTAGATAGTATGAATGATA--T-CATTTTTCTG------TGCCTTAGTTTCGACTT---GCTAAACAGTACTTTAT-GTTTT---ACATGTCAACAACATAATATTAAATAATATTAT-GTAAGA-AAAT-TTAATAAT------TTTGTTGAATTGCGA-TGAAATAACAT-AAAAAATACGAACAAATTAC-CCCATCAACTTATTTTATTTACGAAGCACG
gi|5 : ATTCTTTATTACACCTC------TATAAAACATA---AAAAGTTTAAAAAAAATCGAAGAAT--ACGAAT--G-TGTTTTTTTT----CGTATTTTT--ATCCTAAGGT--TTTTCATAATA-AACCATC-ATC---AAACAAGTATATAGTACAAATGGTA----TATTTTTCT------ATGCCCCAGTTTCGATTT---GCTAAACAGTACTAAAT-GTTTT-A-ACGAGTGAACAACAT-TTATTACATACCTTTAA-GTAAG--AAAA-AC-----TGAAAAATATTTCGAATTTCGA-TGAAATAACATAAAAAAAGAATAACAAATTAC-CCCACCCACCTATTTTATTAGAGAAGTATGaaccaagttgataggtgtgtataattttacttgaatg
gi|3 : TC------TATACAATAAA---AATAGTTTAGGAAAA-TCGAAGGAT--ATGAAA--G-T-TGTTTTTTTC--CCTGTTTTT--ATTCT--AATGGTTTTCATAATA-TACTATC-ATCAAAGAA---GTGGATAGTACAAATGATAAATATATTTTTCT------ATACCTCAGTTTAGACTT---GCTAAACAGAACTAAAT-GTTTA-A-ACGAGTAAACAACATAGCATTACACAATTGTATGACA-G--AA---TG-----T------GTTTTTGAATTTTGATTAAAATAACAT-GAAAAAGATTAACAAATTAC-CTCACCCACTTATTTTATTTAAGAAGTATGaaccaataatgaatttcaaatagtaggtgtttataatataaatgtagc
gi|9 : ctaaaacttaaacctggttataacttatgtagtccaatcaagttaccccaggacccgaaactaaaagtaacatttggaAAAACTTA--AACA-TATAAAGATGTATTAAA--G-TGTTTTTT------CATGTTTTT--ATCCT--AAGGGTTTTCATAATA-TACCATC-ATCAAAAAA----------GTATGAATGATA--T-TATTGTTTTG------TGCACCAGTTTCGACTT---GCTAAACAGTATTAAAT-GTTTT-A-AAAATTAAACAGCATATTATTACACAATTTTAT-TTAAG--AAATATT-----TATTG--TTTTTCAAATTTCGA-TGAAATAACAT-AAAAAAGAATGACAAA-TAC-CCCACCCACTTATTTTATTTAAGAAGTATGaaccgataatgagtttcaaatagtagatgtgtataatttaaatgaaagctagcag
gi|7 : tgtcGTTT-GTAAGG-TCGAAGTAT--ATGAAA--G-CGTTTTTCTTT-TTAATGTTTTCATAAC-----GTA----CCGTAATA-TATAGTACAT----ATATAGGTATATAGTACAAATGATA--G-TATTTTTCTG------TGCCCCAGTTTCGACAT---ATTA-------CTACACAATTTT-ATGCAAG-AA--AA---AATA-AA---AATCTTA---------------------------------CGAATTTCGA-TAAAATAACAT--AAAAAGAATGACAAACTA-TGCCACGCTCTTATTTTATTTAAGAAGTATGaaccaataatgtgttactactagatt
gi|8 : aaccatgccccacaccccgaaactaacagtaacatttgTCATGTGTT---ATCCT--GGTGGTTTTCATGAGATACTCGCA--TCATACAA---GCAGATAGTATGGATGATC--T-CATTTGTATG------TGCCCTAGTTTTGACTT---GCTAAACAGCACTAAAT-GTTTTAA-ATAACTAAACAACATTTTATTACATAATTGTAT-GTaaccaatatttggttaaaacggaatgaagaacatctcaatgcattgacgtttctcgacataggtatcttgttgca
gi|11 : cagaacccgaaactaacggttacattcggattttaagtgtttttagcggcccttcattacaccacagtgattatacaatataaacagtttaggaaaatcgaaagatatgaaagtgtgtgtgtgtttgggggttgttgttgttttttgttgtttaattattttttgtgtgtttttttaggggtgggggggTTTT-TATCCT--GGGGGTTTTCATAATA-TACCATC-GTC---AAAAAAGTAGATAGTTCGAATGATA--T---TTTTTCT------ATGTCCCAGTTTCGACTT---GATTAACAGTACTAAAT-GTTTT-A-ACGGGTTA-TAACATATTATTACACAATTGTAT-GTAAGCAAACT-TA-----TAA----TTTATCGAATTTTGA-TGAAATAACGT--AAACAGAATAACAAATTAC-CCCACACACTTATCTTATTTAAGAA
gi|12 : tgAGTCCGAATTAGG--T-TACGTT-CTG------TGCCTCAGTTTTGACTT---GCTAAACGGTACTAAAT-ATTTT-A-ACCAGTAAACAACATATTATTATACAATCTTAT-GTAAG--AA-T-TT-----T------TTTAACGAATTTTGA-AGAAATAACAT-AAAAAAGAATGACATTTTACCACAATCGACTTATTTCATTCAAGAAGTATGt
gi|16 : TTTGA-TGAAATAACAT-AAAAAAGAATAACAAATTAC-ACCACCCCCTTATTTTATTTAAGAAGTATGgaccaataatgagttactactatatct
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGTGGTCA
Unaligned ( gi|19 ): TTACTATTTATTTGTAAAATGTTTAAACTATAAAGATTA
Alignments
lowQualScore : 222222 1111 11 111111 11 1 111111 55555555555555555555555
lowQualScore : 1 444444 7777 2 0 3 2 1 00 9999 66 5 1 5 3 111111 777 3 44 2 55 4 2 5 44 2 3 0 3 44 8 55 3 000000 666 3 4444 3 3 1 66666666666666666666666 4 5 3 3 44
lowQualScore : . ...... .... . . . . . .. .... .. . . . . ...... ... . .. . .. . . . .. . . . . .. . .. . ...... ... . .... . . . ....................... . . . . ..
lowQualScore : 0 000000 2222 2 6 2 5 0 22 7777 99 0 0 0 1 555555 000 3 66 2 55 0 8 7 55 2 3 7 3 66 5 00 6 555555 444 6 2222 6 6 0 22222222222222222222222 0 7 6 6 66
consensus : CTTCCATTGGTTACTNCCACCAACCATGCGTGAAAGTCGTAGC---AAAATATAGTCCAATCAAGTTACCCCAGGACCCGAGACTAAAAGTAACATTTGGTTTGTAAGTGGTTGTGTGGTCTTCCATCACACCTCAGTTACCC--CAGGACC-CGAAACTAANAGTAACATTTGGTTTGTAAGTGGTTTT-GCGATCCTCCATTACACCTC------TATACAATATA---AAAAGTTTAGGAAAA-TCGAAGGAT--ATGAAAGTGTTTTTT--TTT-TTCATGTTTTTTATCCTAAGGGTTTTCATAATATAC-CGT-CATC--AAAAAA-GTAGATAGTACGAATGATA--T-TATTTTTCTG------TGCCCCAGTTTCGAC---TTGCTAAACAGTACTAAATGTTTT-A-ACGAGT-AA-ACAACATANTATTACACAATTTTATGTAAG--A---A---TTTA----TTTT-TCGAATTTCGA-TGAAATAACATAAAA-AAGAATAACAAATTA-C-CCCACCCACTTATTTTATTTAAGAAGTATG
Reference ( family-5738 ) : CTTCCATTGGTTACTNCCACCAACCATGCGTGAAAGCCGTAGC---AAAATATAGTCCAATCAAGTTACCCCAGGACCCGAAACTAAAAGTAACATTTGGTTTGTAAGTGGTTNTGTGGTCCTCCATCACACCTCAGTTACCC--CAGGACC-CGAAACTAANAGTAACATTTGGTTTGTAAGTGGTTTT-GCGATCCTCCATTACACCTC------TATACAATATA---AAAAGTTTAGGAAAA-TCGAAGGAT--ATGAAAGTGTTTTTT--TTT-TTCATGTTTTTTATCCTAANGGTTTTCATAATATAC-CGT-CATC--AAAAAAAGTAGATAGTACGAATGATA--T-TATTTTTCTG------TGCCCCAGTTTCGAC---TTGCTAAACAGTACTAAATGTTTT-A-ACGAGT-AA-ACAACATANTATTACACAATTTTATGTAAG--A---A---TTT-----TTTT-TCGAATTTCGA-TGAAATAACATAAAA-AAGAATAACAAATTA-C-NCCACCCACTTATTTTATTTAAGAAGTATG
gi|1 : CTTCCAATGGTTACTCCCACCAACCATACGTGAAAGTCATAGTGAAAAAATATAGTCCAATCAAGTTACCCAAGGACCCGAGACTAAAAGTAACATTTGGTTTGTAAGTGGTTGTGTGGTCTTCCATCACACTTCNNNNNNNNNNCAGGACC-CGAGACTAACAGTAACATTTGGTTTGTAAGTGGTTGT-GTGATCCTCCATTACATCTC------TATATATTATA---AAAAGTTTAGGAAAA-TCGAAGGAT--ATGAAAGTGTTTTTT--TTTCTTCATGTTTTTTATCCTGGTGGTTTTCATAATAAAT-CAT-AATCAAAAAAAAAGTAGATAGTACGAATGATA--T-TATTTTTCTGCCACAATGCCCCGGTTTTGAC---ATGCTAAACAGTGCTAAATGTTTT-A-ACAAGT-AA-CCAACATAATATAACACAATTTTATATATG--A---ACT-TTT-----TTTT-TCGAATTTCGA-CGACATGACATAAAA-AAGAATAACAAATTA-CTCCCACCCACTTATCTTGTTTAAAAAGTATG
gi|10 : CTTCCATTGGTTACTTCCACCAACCATGCGTGA------TAAC---AAAAGGTAG
gi|11 : agcctgaaaggctgccagtagtagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTTATCCTGGGGGTTTTCATAATATAC-CAT-CGTC--AAAAAA-GTAGATAGTTCGAATGATA--T-T--TTTTCTA------TGTCCCAGTTTCGAC---TTGATTAACAGTACTAAATGTTTT-A-ACGGGT--T-ATAACATATTATTACACAATTGTATGTAAGCAA---A---CTTATAA-TTTA-TCGAATTTTGA-TGAAATAACGT-AAA-CAGAATAACAAATTA-C-CCCACACACTTATCTTATTTAAGAAgcactgtgttaaatgttgctgtcag
gi|12 : tgAGTCCGAATTAGG--T-TACGTT-CTG------TGCCTCAGTTTTGAC---TTGCTAAACGGTACTAAATATTTT-A-ACCAGT-AA-ACAACATATTATTATACAATCTTATGTAAG--A---A---TTT-----TTTTAACGAATTTTGA-AGAAATAACATAAAA-AAGAATGACATTTTACC-ACAATCGACTTATTTCATTCAAGAAGTATGt
gi|13 : TCAGTAACCA--CAAGGCC-AGAAGCTAAAAGTAACATTTGGTTTGTAAGTGGTTTT-GTGATCGTCCATTACACCTC------TATACATTATA---ACAAGTTTAGGAAAG-TCTAAGGAT--ATCATGTTGTGTTTT--TTT-TTTAT-CTTTTTATCGTAAGGGTTGTTATAATATAA-CAT-TATA--AAAgaccaataatgagttactactatatct
gi|14 : gttgcagCTTCCATTGGTTACTAACACCAACCATGCGTGA------TAAC---AAAAg
gi|14 : taAAAGTCGTAG----AAAATATAGTCCAATCAAGTAACCCCAGGACCCGAGACTAACAGTAACATTTGGTTTGTAAGTGGTTGTGTGGTCTTCCATCACACCTgggcggcactatgttaaatgttgctgttagaaaagtcgtagaaaatatagtccaatcaagtaaccccaggacccgagactaacagtaacatttggtttgtaagtggttgtgtggtcttccatcacacct
gi|15 : tacttccattggttactaacaccaaccatgcgtgataacaaaagggcggcactatgttaaatgttgctgttagaGTGGTTTT-GTGATCGTCCCTTACACATC------TATACAATATA---AAAAGTTTATGAAAA-TCAGAGGAT--ATGAAAGTGATTTTTAATGT-TT----TTTTTTATCCTAATGATTCTCATAATA-AT-CGT-GATC--AA
gi|16 : gTTTGA-TGAAATAACATAAAA-AAGAATAACAAATTA-C-ACCACCCCCTTATTTTATTTAAGAAGTATG
gi|18 : cAGTTACCC--CAGGACC-CGAAACTAAAAGTAACATTTGGTTTATAAGTGGTTTT-GATATCCTTCATTACACCTC------TTTAGAATAT----AAAAGTTTAGGAAAA-TTGAAAGAT--ATGAAAGaaccaataatgagtttcaaatagcaggtgtgaataatttaaacagaagttagcag
gi|2 : atcaCTTCCATTGGTTACTGCCACCAACCATGCGTGA
gi|2 : aAAAGCCATAGC---AAT-TATAGTCCAACCAAGTTACCCCAGGACCCGAGACTAACAGTAACATTTGGTTTGTACGTGGTTGTGTGGCATTCCATCACACCTtaacaacagggaagcgctgtgttattaacgttgctgttagaaaagccatagcaattatagtccaaccaagttaccccaggacccgagactaacagtaacatttggtttgtacgtggttgtgtggcattccatcacacctacgtacaatataaaaagtcaggaaaaatcaaaggatatgaaagtgtttttcttttcatgttttcataacgtaccgtaatcaaaagagtagaaagtacgaatgatatcatttttctgtgccccagtttcgacatataactacacaattttatgtaagaaaaaataatagtctttcgaatttcgataacataacataaaaagaatgacaaattatgccactcacttattttatttaagaagtatgaactaataatgagttaaaacggaatgaagaacatcacaatgtattgaagtttctcgacatagatatcttgttgca
gi|2 : acttccattggttactgccaccaaccatgcgtgataacaacagggaagcgctgtgttattaacgttgctgttagaAGTTACCC--CAGGACC-CGAGACTAACAGTAACATTTGGTTTGTACGTGGTTGT-GTGGCATTCCATCACACCTA------CGTACAATATA---AAAAGTCAGGAAAAA-TCAAAGGAT--ATGAAAGTG-TTTTT--CTT-TTCAT----------------GTTTTCATAACGTAC-CGT-AATC---AAAAGAGTAGAAAGTACGAATGATA--T-CATTTTTCTG------TGCCCCAGTTTCGAC---ATAT--AAC--TACACAA--TTTT-A----TGT-AAGAAAAAATAATAGT-C----TTTC------G--A---A---TT------------------TCGA-TAACATAACAT-AAA-AAGAATGACAAATTA-T-GCCACTCACTTATTTTATTTAAGAAGTATGacgtacaatataaaaagtcaggaaaaatcaaaggatatgaaagtgtttttcttttcatgttttcataacgtaccgtaatcaaaagagtagaaagtacgaatgatatcatttttctgtgccccagtttcgacatataactacacaattttatgtaagaaaaaataatagtctttcgaatttcgataacataacataaaaagaatgacaaattatgccactcacttattttatttaagaagtatgaactaataatgagttaaaacggaatgaagaacatcacaatgtattgaagtttctcgacatagatatcttgttgca
gi|3 : acttccattggttactgccaccaaccatgcgtgataacaacagggaagcgctgtgttattaacgttgctgttagaaaagccatagcaattatagtccaaccaCTAAAACTTAAACCTGGTT-ATAACT---TATGTAGTCC--AATCA------AGTTACCC--CAGGACC-CGAAACTAAAAGTAACATTTGGaactaataatgagttaaaacggaatgaagaacatcacaatgtattgaagtttctcgacatagatatcttgttgca
gi|3 : ATGTAGTCCAATCAAGTTACCCCAGGACCCGAAACTAAAAGTAACATTTGGatctatacaataaaaatagtttaggaaaatcgaaggatatgaaagttgtttttttccctgtttttattctaatggttttcataatatactatcatcaaagaagtggatagtacaaatgataaatatatttttctatacctcagtttagacttgctaaacagaactaaatgtttaaacgagtaaacaacatagcattacacaattgtatgacagaatgtgtttttgaattttgattaaaataacatgaaaaagattaacaaattacctcacccacttattttatttaagaagtatgaaccgataatgagtttcaaatagtagatgtgtataatttaaatgaaagctagcag
gi|3 : ctaaaacttaaacctggttataacttTC------TATACAATAAA---AATAGTTTAGGAAAA-TCGAAGGAT--ATGAAAGT--TGTTT--TTT-TCCCTGTTTTT-ATTCTAATGGTTTTCATAATATAC-TAT-CATC--AAAGAA-GTGGATAGTACAAATGATAAATATATTTTTCTA------TACCTCAGTTTAGAC---TTGCTAAACAGAACTAAATGTTTA-A-ACGAGT-AA-ACAACATAGCATTACACAATTGTATGACAG--A---A---TGT-----GTTT-TTGAATTTTGATTAAAATAACATGAAA-AAGATTAACAAATTA-C-CTCACCCACTTATTTTATTTAAGAAGTATGatctatacaataaaaatagtttaggaaaatcgaaggatatgaaagttgtttttttccctgtttttattctaatggttttcataatatactatcatcaaagaagtggatagtacaaatgataaatatatttttctatacctcagtttagacttgctaaacagaactaaatgtttaaacgagtaaacaacatagcattacacaattgtatgacagaatgtgtttttgaattttgattaaaataacatgaaaaagattaacaaattacctcacccacttattttatttaagaagtatgaaccgataatgagtttcaaatagtagatgtgtataatttaaatgaaagctagcag
gi|4 : ctaaaacttaaacctggttataacttatgtagtccaatcaagttaccccaggacccgaaactaaaagtaacatttggaTTATGTG------CATCACA------TTACCT--CAAGACCTCGAACCTAAAAGCAACATTTAGTTTGCAAGTGGTTTT-GCGATTCTCCATTACACCTC------TAAATAATATATTTAACAATTTAGGACAG-TCGAAGAAT--ATGAAAGTGTTGTTT--ATT-TT-ATATTTTTTATCCTAAGGGTTTTCATAATGTAC-CAT-CATT--AAAAAAG-----------------------TATTTTTCTG------TGCCCCAGGTTCGAC---TAACTAAACAGTACTAAATGTTTT-A-G-GAATAAA-ACAACATATTATTGCCCAATTGTATGCAAG--A---A---aaccgataatgagtttcaaatagtagatgtgtataatttaaatgaaagctagcag
gi|4 : ttaaaaatccaacactggctatAGAA-AAGAATA-CAAATTA-C-ATCACCCACTCATTTTATTTAA-AAGTATaagaatacaaattacatcacccactcattttatttaaaagtattaaccaataatgagttacagatagtagatatgtttacttgtaattgatgctggcagagcat
gi|5 : ttaaaaatccaacactggctatttatgtgcatcacattacctcaagacctcgaacctaaaagcaacatttagtttgcaagtggttttgcgattctccattacacctctaaataatatatttaacaatttaggacagtcgaagaatatgaaagtgttgtttattttatattttttatcctaagggttttcataatgtaccatcattaaaaaagtatttttctgtgccccaggttcgactaactaaacagtactaaatgttttaggaataaaacaacatattattgcccaattgtatgcaATTCTTTATTACACCTC------TATAAAACATA---AAAAGTTTAAAAAAAATCGAAGAAT--ACGAATGTGTTTTTT--TT----CGTATTTTT-ATCCTAAGGTTTTTCATAATAAAC-CAT-CATC--AAACAA-GTATATAGTACAAATGGTA--T--ATTTTTCTA------TGCCCCAGTTTCGAT---TTGCTAAACAGTACTAAATGTTTT-A-ACGAGT-GA-ACAACAT-TTATTACATACCTTTAAGTAAG--A---AAAACTGAAAAATATT-TCGAATTTCGA-TGAAATAACATAAAAAAAGAATAACAAATTA-C-CCCACCCACCTATTTTATTAGAGAAGTATGtaaccaataatgagttacagatagtagatatgtttacttgtaattgatgctggcagagcat
gi|6 : GGTTTC-GTGATCCCCAATTAAACCTC------TATACAATGTA---AAAAGTTTTGGAAAA-TCGTAGATT--ATGAAAGT-----TG--TTT-TTCATATTTTT-ATCCTAAGGGTTTTCATCATATAC-CAT-CATT--AAAA--AGTAGATAGTATGAATGATA--T-CATTTTTCTG------TGCCTTAGTTTCGAC---TTGCTAAACAGTACTTTATGTTTT---ACATGT-CA-ACAACATAATATTAAATAATATTATGTAAGAAA---A---TTTAATAATTTTGTTGAATTGCGA-TGAAATAACATAAAA-AATACGAACAAATTA-C-CCCATCAACTTATTTTATTTACGAAGCACGaaccaataatgaatttcaaatagtaggtgtttataatataaatgtagc
gi|7 : TGCCC--CACACCC-CGAAACTAACAGTAACATTTGGTTTGTAAGaaccaagttgataggtgtgtataattttacttgaatg
gi|7 : aaccaGTTT-GTAAGG-TCGAAGTAT--ATGAAAGCGTTTTTC--TTT-TTAATGTTTT----CATAACG--TACCGTAATATAT-AGTACAT----ATATAGGTATATAGTACAAATGATA--G-TATTTTTCTG------TGCCCCAGTTTCGACATATTACTACACA---------ATTTT-ATGCAAGA-AA-A------AATA----AAAATCTTA------------------------------CGAATTTCGA-TAAAATAACAT-AAA-AAGAATGACAAACTA-T-GCCACGCTCTTATTTTATTTAAGAAGTATGgtcgaagtatatgaaagcgtttttctttttaatgttttcataacgtaccgtaatatatagtacatatataggtatatagtacaaatgatagtatttttctgtgccccagtttcgacatattactacacaattttatgcaagaaaaaataaaaatcttacgaatttcgataaaataacataaaaagaatgacaaactatgccacgctcttattttatttaagaagtatgaaccaatatttggttaaaacggaatgaagaacatctcaatgcattgacgtttctcgacataggtatcttgttgca
gi|8 : aaccatgccccacaccccgaaactaacagtaacatttg--CAGAACC-CGAAACTAACGGTTACATTCGGATTTTAAGTGTTTTTAGCGGCCCTTCATTACACCACAGTGATTATACAATATA---AACAGTTTAGGAAAA-TCGAAAGAT--ATGAAAGTGTaaccaatatttggttaaaacggaatgaagaacatctcaatgcattgacgtttctcgacataggtatcttgttgca
gi|8 : TCATGTGTT--ATCCTGGTGGTTTTCATGAGATACTCG--CATC--ATACAA-GCAGATAGTATGGATGATC--T-CATTTGTATG------TGCCCTAGTTTTGAC---TTGCTAAACAGCACTAAATGTTTTAA-ATAACT-AA-ACAACATTTTATTACATAATTGTATGTgtgtgtgtttgggggttgttgttgttttttgttgtttaattattttttgtgtgtttttttaggggtgggggggtcatgtgttatcctggtggttttcatgagatactcgcatcatacaagcagatagtatggatgatctcatttgtatgtgccctagttttgacttgctaaacagcactaaatgttttaaataactaaacaacattttattacataattgtatgt
gi|9 : cagaacccgaaactaacggttacattcggattttaagtgtttttagcggcccttcattacaccacagtgattatacaatataaacagtttaggaaaatcgaaagatatgaaagtgtgtgtgtgtttgggggttgttgttgttttttgttgtttaattattttttgtgtgtttttttaggggtgggggggAAAACTTA--AACA-TATAAAGATGTATTAAAGTGTTTTTT--------CATGTTTTT-ATCCTAAGGGTTTTCATAATATAC-CAT-CATC--AAAAAA--------GTATGAATGATA--T-TATTGTTTTG------TGCACCAGTTTCGAC---TTGCTAAACAGTATTAAATGTTTT-A-AAAATT-AA-ACAGCATATTATTACACAATTTTATTTAAG--AAATA---TTTATTG-TTTT-TCAAATTTCGA-TGAAATAACATAAAA-AAGAATGACAAA-TA-C-CCCACCCACTTATTTTATTTAAGAAGTATG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGTGGTCA
Unaligned ( gi|19 ): TTACTATTTATTTGTAAAATGTTTAAACTATAAAGATTA
Alignments
lowQualScore : 222222 1111 111111 11 111111 6666666666666666666666666666666
lowQualScore : 1 111111 7777 0 3 2 3 9999 66 5 1 5 3 111111 777 3 44 55 4 44 1 22 2 3 0 3 555 2 55 77 000000 666 3 4444 3 3 1 1 3333333333333333333333333333333 3 5 3 444
lowQualScore : . ...... .... . . . . .... .. . . . . ...... ... . .. .. . .. . .. . . . . ... . .. .. ...... ... . .... . . . . ............................... . . . ...
lowQualScore : 0 222222 2222 6 2 5 2 7777 99 0 0 0 1 555555 000 3 66 55 0 00 2 55 5 3 7 3 888 5 00 66 555555 444 6 2222 6 6 0 4 7777777777777777777777777777777 6 7 6 111
consensus : CTTCCATTGGTTACTNCCACCAACCATGCGTGAAAGTCGTAGC---AAAATATAGTCCAATCAAGTTACCCCAGGACCCGAGACTAAAAGTAACATTTGGTTTGTAAGTGGTTGTGTGGTCTTCCATCACACCTCAGTTACCC--CAGGACC-CGAAACTAANAGTAACATTTGGTTTGTAAGTGGTTTT-GCGATCCTCCATTACACCTC------TATACAATATA---AAAAGTTTAGGAAAA-TCGAAGGAT--ATGAAAGTGTTTTTT--TTT-TTCATGTTTTTTATCCTAAGGGTTTTCATAATATAC-CGT-CATC---AAAAAAGTAGATAGTACGAATGAT--AT-TATTTTTCTG------TGCCCCAGTTTCGAC---TTGCTAAACAGTACTAAATGTTTT-A-ACGAGT-AA-ACAACATANTATTACACAATTTTATGTAAG--A---A---TTT----A----T--TTT-TCGAATTTCGA-TGAAATAACATAAAA-AAGAATAACAAATTAC-C-CCACCCACTTATTTTATTTAAGAAGTATG
Reference ( family-5738 ) : CTTCCATTGGTTACTNCCACCAACCATGCGTGAAAGTCGTAGC---AAAATATAGTCCAATCAAGTTACCCCAGGACCCGAGACTAAAAGTAACATTTGGTTTGTAAGTGGTTGTGTGGTCTTCCATCACACCTCAGTTACCC--CAGGACC-CGAAACTAANAGTAACATTTGGTTTGTAAGTGGTTTT-GCGATCCTCCATTACACCTC------TATACAATATA---AAAAGTTTAGGAAAA-TCGAAGGAT--ATGAAAGTGTTTTTT--TTT-TTCATGTTTTTTATCCTAAGGGTTTTCATAATATAC-CGT-CATC---AAAAAAGTAGATAGTACGAATGAT--AT-TATTTTTCTG------TGCCCCAGTTTCGAC---TTGCTAAACAGTACTAAATGTTTT-A-ACGAGT-AA-ACAACATANTATTACACAATTTTATGTAAG--A---A---TTT----A----T--TTT-TCGAATTTCGA-TGAAATAACATAAAA-AAGAATAACAAATTAC-C-CCACCCACTTATTTTATTTAAGAAGTATG
gi|1 : CTTCCAATGGTTACTCCCACCAACCATACGTGAAAGTCATAGTGAAAAAATATAGTCCAATCAAGTTACCCAAGGACCCGAGACTAAAAGTAACATTTGGTTTGTAAGTGGTTGTGTGGTCTTCCATCACACTTCNNNNNNNNNNCAGGACC-CGAGACTAACAGTAACATTTGGTTTGTAAGTGGTTGT-GTGATCCTCCATTACATCTC------TATATATTATA---AAAAGTTTAGGAAAA-TCGAAGGAT--ATGAAAGTGTTTTTT--TTTCTTCATGTTTTTTATCCTGGTGGTTTTCATAATAAAT-CAT-AATCAAAAAAAAAGTAGATAGTACGAATGAT--AT-TATTTTTCTGCCACAATGCCCCGGTTTTGAC---ATGCTAAACAGTGCTAAATGTTTT-A-ACAAGT-AA-CCAACATAATATAACACAATTTTATATATG--A---AC--TTT----T----T--TTT-TCGAATTTCGA-CGACATGACATAAAA-AAGAATAACAAATTACTC-CCACCCACTTATCTTGTTTAAAAAGTATG
gi|10 : CTTCCATTGGTTACTTCCACCAACCATGCGTGA------TAAC---AAAAGGTAG
gi|11 : agcctgaaaggctgccagtagtagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTTATCCTGGGGGTTTTCATAATATAC-CAT-CGTC---AAAAAAGTAGATAGTTCGAATGAT--AT---TTTTTCTA------TGTCCCAGTTTCGAC---TTGATTAACAGTACTAAATGTTTT-A-ACGGGT--T-ATAACATATTATTACACAATTGTATGTAAGCAA---A---CTT----A----TAATTTATCGAATTTTGA-TGAAATAACGT-AAA-CAGAATAACAAATTAC-C-CCACACACTTATCTTATTTAAGAAgcactgtgttaaatgttgctgtcag
gi|12 : tgAGTCCGAATTAG--GT-TACGTT-CTG------TGCCTCAGTTTTGAC---TTGCTAAACGGTACTAAATATTTT-A-ACCAGT-AA-ACAACATATTATTATACAATCTTATGTAAG--A---A---TTT----T----T--TTA-ACGAATTTTGA-AGAAATAACATAAAA-AAGAATGACATTTTAC-CACAATCGACTTATTTCATTCAAGAAGTATGt
gi|13 : TCAGTAACCA--CAAGGCC-AGAAGCTAAAAGTAACATTTGGTTTGTAAGTGGTTTT-GTGATCGTCCATTACACCTC------TATACATTATA---ACAAGTTTAGGAAAG-TCTAAGGAT--ATCATGTTGTGTTTT--TTT-TTTAT-CTTTTTATCGTAAGGGTTGTTATAATATAA-CAT-TATA---AAAgaccaataatgagttactactatatct
gi|14 : gttgcagCTTCCATTGGTTACTAACACCAACCATGCGTGA------TAAC---AAAAg
gi|14 : taAAAGTCGTAG----AAAATATAGTCCAATCAAGTAACCCCAGGACCCGAGACTAACAGTAACATTTGGTTTGTAAGTGGTTGTGTGGTCTTCCATCACACCTgggcggcactatgttaaatgttgctgttagaaaagtcgtagaaaatatagtccaatcaagtaaccccaggacccgagactaacagtaacatttggtttgtaagtggttgtgtggtcttccatcacacct
gi|15 : tacttccattggttactaacaccaaccatgcgtgataacaaaagggcggcactatgttaaatgttgctgttagaGTGGTTTT-GTGATCGTCCCTTACACATC------TATACAATATA---AAAAGTTTATGAAAA-TCAGAGGAT--ATGAAAGTGATTTTTAATGT-TT----TTTTTTATCCTAATGATTCTCATAATA-AT-CGT-GATC---AA
gi|16 : gTTTGA-TGAAATAACATAAAA-AAGAATAACAAATTAC-A-CCACCCCCTTATTTTATTTAAGAAGTATG
gi|18 : cAGTTACCC--CAGGACC-CGAAACTAAAAGTAACATTTGGTTTATAAGTGGTTTT-GATATCCTTCATTACACCTC------TTTAGAATAT----AAAAGTTTAGGAAAA-TTGAAAGAT--ATGAAAGaaccaataatgagtttcaaatagcaggtgtgaataatttaaacagaagttagcag
gi|2 : atcaCTTCCATTGGTTACTGCCACCAACCATGCGTGA
gi|2 : aAAAGCCATAGC---AAT-TATAGTCCAACCAAGTTACCCCAGGACCCGAGACTAACAGTAACATTTGGTTTGTACGTGGTTGTGTGGCATTCCATCACACCTtaacaacagggaagcgctgtgttattaacgttgctgttagaaaagccatagcaattatagtccaaccaagttaccccaggacccgagactaacagtaacatttggtttgtacgtggttgtgtggcattccatcacacctacgtacaatataaaaagtcaggaaaaatcaaaggatatgaaagtgtttttcttttcatgttttcataacgtaccgtaatcaaaagagtagaaagtacgaatgatatcatttttctgtgccccagtttcgacatataactacacaattttatgtaagaaaaaataatagtctttcgaatttcgataacataacataaaaagaatgacaaattatgccactcacttattttatttaagaagtatgaactaataatgagttaaaacggaatgaagaacatcacaatgtattgaagtttctcgacatagatatcttgttgca
gi|2 : acttccattggttactgccaccaaccatgcgtgataacaacagggaagcgctgtgttattaacgttgctgttagaAGTTACCC--CAGGACC-CGAGACTAACAGTAACATTTGGTTTGTACGTGGTTGT-GTGGCATTCCATCACACCTA------CGTACAATATA---AAAAGTCAGGAAAAA-TCAAAGGAT--ATGAAAGTGTTTTTC--TTT-T-CATGTTTT----------------CATAACGTAC-CGT-AATC---AAAAGAGTAGAAAGTACGAATGAT--AT-CATTTTTCTG------TGCCCCAGTTTCGAC---ATAT--AAC--TACACAA--TTTT-A----TGT-AAGAAAAAATAATAGT-C----TTTC------G--A---A---TTT------------------------CGA-TAACATAACAT-AAA-AAGAATGACAAATTAT-G-CCACTCACTTATTTTATTTAAGAAGTATGacgtacaatataaaaagtcaggaaaaatcaaaggatatgaaagtgtttttcttttcatgttttcataacgtaccgtaatcaaaagagtagaaagtacgaatgatatcatttttctgtgccccagtttcgacatataactacacaattttatgtaagaaaaaataatagtctttcgaatttcgataacataacataaaaagaatgacaaattatgccactcacttattttatttaagaagtatgaactaataatgagttaaaacggaatgaagaacatcacaatgtattgaagtttctcgacatagatatcttgttgca
gi|3 : acttccattggttactgccaccaaccatgcgtgataacaacagggaagcgctgtgttattaacgttgctgttagaaaagccatagcaattatagtccaaccaCTAAAACTTAAACCTGGTT-ATAACT---TATGTAGTC--CAATCA------AGTTACCC--CAGGACC-CGAAACTAAAAGTAACATTTGGaactaataatgagttaaaacggaatgaagaacatcacaatgtattgaagtttctcgacatagatatcttgttgca
gi|3 : ATGTAGTCCAATCAAGTTACCCCAGGACCCGAAACTAAAAGTAACATTTGGatctatacaataaaaatagtttaggaaaatcgaaggatatgaaagttgtttttttccctgtttttattctaatggttttcataatatactatcatcaaagaagtggatagtacaaatgataaatatatttttctatacctcagtttagacttgctaaacagaactaaatgtttaaacgagtaaacaacatagcattacacaattgtatgacagaatgtgtttttgaattttgattaaaataacatgaaaaagattaacaaattacctcacccacttattttatttaagaagtatgaaccgataatgagtttcaaatagtagatgtgtataatttaaatgaaagctagcag
gi|3 : ctaaaacttaaacctggttataacttTC------TATACAATAAA---AATAGTTTAGGAAAA-TCGAAGGAT--ATGAAA--GTTGTTT--TTT-TCCCTG-TTTTTATTCTAATGGTTTTCATAATATAC-TAT-CATC---AAAGAAGTGGATAGTACAAATGATAAATATATTTTTCTA------TACCTCAGTTTAGAC---TTGCTAAACAGAACTAAATGTTTA-A-ACGAGT-AA-ACAACATAGCATTACACAATTGTATGACAG--A---A---TGT----G----T--TTT-T-GAATTTTGATTAAAATAACATGAAA-AAGATTAACAAATTAC-C-TCACCCACTTATTTTATTTAAGAAGTATGatctatacaataaaaatagtttaggaaaatcgaaggatatgaaagttgtttttttccctgtttttattctaatggttttcataatatactatcatcaaagaagtggatagtacaaatgataaatatatttttctatacctcagtttagacttgctaaacagaactaaatgtttaaacgagtaaacaacatagcattacacaattgtatgacagaatgtgtttttgaattttgattaaaataacatgaaaaagattaacaaattacctcacccacttattttatttaagaagtatgaaccgataatgagtttcaaatagtagatgtgtataatttaaatgaaagctagcag
gi|4 : ctaaaacttaaacctggttataacttatgtagtccaatcaagttaccccaggacccgaaactaaaagtaacatttggaCATCACA------TTACCT--CAAGACCTCGAACCTAAAAGCAACATTTAGTTTGCAAGTGGTTTT-GCGATTCTCCATTACACCTC------TAAATAATATATTTAACAATTTAGGACAG-TCGAAGAAT--ATGAAAGTGTTGTTT--ATT-TT-ATATTTTTTATCCTAAGGGTTTTCATAATGTAC-CAT-CATT---AAAAAAG----------------------TATTTTTCTG------TGCCCCAGGTTCGAC---TAACTAAACAGTACTAAATGTTTT-A-G-GAATAAA-ACAACATATTATTGCCCAATTGTATGCAAG--A----------------------------------------AAAGAATACAA-------ATTACA--TCAC-C-C-----ACTCATTTTATTTAA-AAGTATaaccgataatgagtttcaaatagtagatgtgtataatttaaatgaaagctagcag
gi|5 : ttaaaaatccaacactggctatttatgtgATTCTTTATTACACCTC------TATAAAACATA---AAAAGTTTAAAAAAAATCGAAGAAT--ACGAATGTGTTTTTT--TT----CGTATTTTT-ATCCTAAGGTTTTTCATAATAAAC-CAT-CATC---AAACAAGTATATAGTACAAATGGT--AT--ATTTTTCTA------TGCCCCAGTTTCGAT---TTGCTAAACAGTACTAAATGTTTT-A-ACGAGT-GA-ACAACAT-TTATTACATACCTTTAAGTAAG--A---AAAACTG----AAAAAT--ATT-TCGAATTTCGA-TGAAATAACATAAAAAAAGAATAACAAATTAC-C-CCACCCACCTATTTTATTAGAGAAGTATGtaaccaataatgagttacagatagtagatatgtttacttgtaattgatgctggcagagcat
gi|6 : GGTTTC-GTGATCCCCAATTAAACCTC------TATACAATGTA---AAAAGTTTTGGAAAA-TCGTAGATT--ATGAAAGT-----TG--TTT-TTCATATTTTT-ATCCTAAGGGTTTTCATCATATAC-CAT-CATT---AAAA-AGTAGATAGTATGAATGAT--AT-CATTTTTCTG------TGCCTTAGTTTCGAC---TTGCTAAACAGTACTTTATGTTTT---ACATGT-CA-ACAACATAATATTAAATAATATTATGTAAGAAA---A---TTTAATAA----T--TTTGTTGAATTGCGA-TGAAATAACATAAAA-AATACGAACAAATTAC-C-CCATCAACTTATTTTATTTACGAAGCACGaaccaataatgaatttcaaatagtaggtgtttataatataaatgtagc
gi|7 : TGCCC--CACACCC-CGAAACTAACAGTAACATTTGGTTTGTAAGaaccaagttgataggtgtgtataattttacttgaatg
gi|7 : aaccaGTTT-GTAAGG-TCGAAGTAT--ATGAAAGCGTTTTTC--TTT-TTAATGTTTT----CATAACG--TACCGTAATATAT-AGTACAT----ATATAGGTATATAGTACAAATGAT--AG-TATTTTTCTG------TGCCCCAGTTTCGACATATTACTACACA---------ATTTT-ATGCAAGA-AA-A------AATA----AAAATCTTACG------------------------------------AATTTCGA-TAAAATAACAT-AAA-AAGAATGACAAACTAT-G-CCACGCTCTTATTTTATTTAAGAAGTATGgtcgaagtatatgaaagcgtttttctttttaatgttttcataacgtaccgtaatatatagtacatatataggtatatagtacaaatgatagtatttttctgtgccccagtttcgacatattactacacaattttatgcaagaaaaaataaaaatcttacgaatttcgataaaataacataaaaagaatgacaaactatgccacgctcttattttatttaagaagtatgaaccaatatttggttaaaacggaatgaagaacatctcaatgcattgacgtttctcgacataggtatcttgttgca
gi|8 : aaccatgccccacaccccgaaactaacagtaacatttg--CAGAACC-CGAAACTAACGGTTACATTCGGATTTTAAGTGTTTTTAGCGGCCCTTCATTACACCACAGTGATTATACAATATA---AACAGTTTAGGAAAA-TCGAAAGAT--ATGAAAGTGTaaccaatatttggttaaaacggaatgaagaacatctcaatgcattgacgtttctcgacataggtatcttgttgca
gi|8 : TCATGTGTT--ATCCTGGTGGTTTTCATGAGATACTCG--CATC---ATACAAGCAGATAGTATGGATGAT--CT-CATTTGTATG------TGCCCTAGTTTTGAC---TTGCTAAACAGCACTAAATGTTTTAA-ATAACT-AA-ACAACATTTTATTACATAATTGTATGTgtgtgtgtttgggggttgttgttgttttttgttgtttaattattttttgtgtgtttttttaggggtgggggggtcatgtgttatcctggtggttttcatgagatactcgcatcatacaagcagatagtatggatgatctcatttgtatgtgccctagttttgacttgctaaacagcactaaatgttttaaataactaaacaacattttattacataattgtatgt
gi|9 : cagaacccgaaactaacggttacattcggattttaagtgtttttagcggcccttcattacaccacagtgattatacaatataaacagtttaggaaaatcgaaagatatgaaagtgtgtgtgtgtttgggggttgttgttgttttttgttgtttaattattttttgtgtgtttttttaggggtgggggggAAAACTTA--AACA-TATAAAGATGTATTAAAGTGTTTTTT--------CATGTTTTT-ATCCTAAGGGTTTTCATAATATAC-CAT-CATC---AAAAAAGTA-------TGAATGAT--AT-TATTGTTTTG------TGCACCAGTTTCGAC---TTGCTAAACAGTATTAAATGTTTT-A-AAAATT-AA-ACAGCATATTATTACACAATTTTATTTAAG--AAATA---TTT----ATTG-T--TTT-TCAAATTTCGA-TGAAATAACATAAAA-AAGAATGACAAA-TAC-C-CCACCCACTTATTTTATTTAAGAAGTATG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGTGGTCA
Unaligned ( gi|19 ): TTACTATTTATTTGTAAAATGTTTAAACTATAAAGATTA
Alignments
lowQualScore : 222222 1111 111111 11 111111 6666666666666666666666666666666
lowQualScore : 1 111111 7777 0 3 2 3 9999 66 5 1 5 3 111111 777 3 44 55 4 44 1 22 2 3 0 3 555 2 55 77 000000 666 3 4444 3 3 1 1 3333333333333333333333333333333 3 5 3 444
lowQualScore : . ...... .... . . . . .... .. . . . . ...... ... . .. .. . .. . .. . . . . ... . .. .. ...... ... . .... . . . . ............................... . . . ...
lowQualScore : 0 222222 2222 6 2 5 2 7777 99 0 0 0 1 555555 000 3 66 55 0 00 2 55 5 3 7 3 888 5 00 66 555555 444 6 2222 6 6 0 4 7777777777777777777777777777777 6 7 6 111
consensus : CTTCCATTGGTTACTNCCACCAACCATGCGTGAAAGTCGTAGC---AAAATATAGTCCAATCAAGTTACCCCAGGACCCGAGACTAAAAGTAACATTTGGTTTGTAAGTGGTTGTGTGGTCTTCCATCACACCTCAGTTACCC--CAGGACC-CGAAACTAANAGTAACATTTGGTTTGTAAGTGGTTTT-GCGATCCTCCATTACACCTC------TATACAATATA---AAAAGTTTAGGAAAA-TCGAAGGAT--ATGAAAGTGTTTTTT--TTT-TTCATGTTTTTTATCCTAAGGGTTTTCATAATATAC-CGT-CATC---AAAAAAGTAGATAGTACGAATGAT--AT-TATTTTTCTG------TGCCCCAGTTTCGAC---TTGCTAAACAGTACTAAATGTTTT-A-ACGAGT-AA-ACAACATANTATTACACAATTTTATGTAAG--A---A---TTT----A----T--TTT-TCGAATTTCGA-TGAAATAACATAAAA-AAGAATAACAAATTAC-C-CCACCCACTTATTTTATTTAAGAAGTATG
Reference ( family-5738 ) : CTTCCATTGGTTACTNCCACCAACCATGCGTGAAAGTCGTAGC---AAAATATAGTCCAATCAAGTTACCCCAGGACCCGAGACTAAAAGTAACATTTGGTTTGTAAGTGGTTGTGTGGTCTTCCATCACACCTCAGTTACCC--CAGGACC-CGAAACTAANAGTAACATTTGGTTTGTAAGTGGTTTT-GCGATCCTCCATTACACCTC------TATACAATATA---AAAAGTTTAGGAAAA-TCGAAGGAT--ATGAAAGTGTTTTTT--TTT-TTCATGTTTTTTATCCTAAGGGTTTTCATAATATAC-CGT-CATC---AAAAAAGTAGATAGTACGAATGAT--AT-TATTTTTCTG------TGCCCCAGTTTCGAC---TTGCTAAACAGTACTAAATGTTTT-A-ACGAGT-AA-ACAACATANTATTACACAATTTTATGTAAG--A---A---TTT----A----T--TTT-TCGAATTTCGA-TGAAATAACATAAAA-AAGAATAACAAATTAC-C-CCACCCACTTATTTTATTTAAGAAGTATG
gi|1 : CTTCCAATGGTTACTCCCACCAACCATACGTGAAAGTCATAGTGAAAAAATATAGTCCAATCAAGTTACCCAAGGACCCGAGACTAAAAGTAACATTTGGTTTGTAAGTGGTTGTGTGGTCTTCCATCACACTTCNNNNNNNNNNCAGGACC-CGAGACTAACAGTAACATTTGGTTTGTAAGTGGTTGT-GTGATCCTCCATTACATCTC------TATATATTATA---AAAAGTTTAGGAAAA-TCGAAGGAT--ATGAAAGTGTTTTTT--TTTCTTCATGTTTTTTATCCTGGTGGTTTTCATAATAAAT-CAT-AATCAAAAAAAAAGTAGATAGTACGAATGAT--AT-TATTTTTCTGCCACAATGCCCCGGTTTTGAC---ATGCTAAACAGTGCTAAATGTTTT-A-ACAAGT-AA-CCAACATAATATAACACAATTTTATATATG--A---AC--TTT----T----T--TTT-TCGAATTTCGA-CGACATGACATAAAA-AAGAATAACAAATTACTC-CCACCCACTTATCTTGTTTAAAAAGTATG
gi|10 : CTTCCATTGGTTACTTCCACCAACCATGCGTGA------TAAC---AAAAGGTAG
gi|11 : agcctgaaaggctgccagtagtagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTTATCCTGGGGGTTTTCATAATATAC-CAT-CGTC---AAAAAAGTAGATAGTTCGAATGAT--AT---TTTTTCTA------TGTCCCAGTTTCGAC---TTGATTAACAGTACTAAATGTTTT-A-ACGGGT--T-ATAACATATTATTACACAATTGTATGTAAGCAA---A---CTT----A----TAATTTATCGAATTTTGA-TGAAATAACGT-AAA-CAGAATAACAAATTAC-C-CCACACACTTATCTTATTTAAGAAgcactgtgttaaatgttgctgtcag
gi|12 : tgAGTCCGAATTAG--GT-TACGTT-CTG------TGCCTCAGTTTTGAC---TTGCTAAACGGTACTAAATATTTT-A-ACCAGT-AA-ACAACATATTATTATACAATCTTATGTAAG--A---A---TTT----T----T--TTA-ACGAATTTTGA-AGAAATAACATAAAA-AAGAATGACATTTTAC-CACAATCGACTTATTTCATTCAAGAAGTATGt
gi|13 : TCAGTAACCA--CAAGGCC-AGAAGCTAAAAGTAACATTTGGTTTGTAAGTGGTTTT-GTGATCGTCCATTACACCTC------TATACATTATA---ACAAGTTTAGGAAAG-TCTAAGGAT--ATCATGTTGTGTTTT--TTT-TTTAT-CTTTTTATCGTAAGGGTTGTTATAATATAA-CAT-TATA---AAAgaccaataatgagttactactatatct
gi|14 : gttgcagCTTCCATTGGTTACTAACACCAACCATGCGTGA------TAAC---AAAAg
gi|14 : taAAAGTCGTAG----AAAATATAGTCCAATCAAGTAACCCCAGGACCCGAGACTAACAGTAACATTTGGTTTGTAAGTGGTTGTGTGGTCTTCCATCACACCTgggcggcactatgttaaatgttgctgttagaaaagtcgtagaaaatatagtccaatcaagtaaccccaggacccgagactaacagtaacatttggtttgtaagtggttgtgtggtcttccatcacacct
gi|15 : tacttccattggttactaacaccaaccatgcgtgataacaaaagggcggcactatgttaaatgttgctgttagaGTGGTTTT-GTGATCGTCCCTTACACATC------TATACAATATA---AAAAGTTTATGAAAA-TCAGAGGAT--ATGAAAGTGATTTTTAATGT-TT----TTTTTTATCCTAATGATTCTCATAATA-AT-CGT-GATC---AA
gi|16 : gTTTGA-TGAAATAACATAAAA-AAGAATAACAAATTAC-A-CCACCCCCTTATTTTATTTAAGAAGTATG
gi|18 : cAGTTACCC--CAGGACC-CGAAACTAAAAGTAACATTTGGTTTATAAGTGGTTTT-GATATCCTTCATTACACCTC------TTTAGAATAT----AAAAGTTTAGGAAAA-TTGAAAGAT--ATGAAAGaaccaataatgagtttcaaatagcaggtgtgaataatttaaacagaagttagcag
gi|2 : atcaCTTCCATTGGTTACTGCCACCAACCATGCGTGA
gi|2 : aAAAGCCATAGC---AAT-TATAGTCCAACCAAGTTACCCCAGGACCCGAGACTAACAGTAACATTTGGTTTGTACGTGGTTGTGTGGCATTCCATCACACCTtaacaacagggaagcgctgtgttattaacgttgctgttagaaaagccatagcaattatagtccaaccaagttaccccaggacccgagactaacagtaacatttggtttgtacgtggttgtgtggcattccatcacacctacgtacaatataaaaagtcaggaaaaatcaaaggatatgaaagtgtttttcttttcatgttttcataacgtaccgtaatcaaaagagtagaaagtacgaatgatatcatttttctgtgccccagtttcgacatataactacacaattttatgtaagaaaaaataatagtctttcgaatttcgataacataacataaaaagaatgacaaattatgccactcacttattttatttaagaagtatgaactaataatgagttaaaacggaatgaagaacatcacaatgtattgaagtttctcgacatagatatcttgttgca
gi|2 : acttccattggttactgccaccaaccatgcgtgataacaacagggaagcgctgtgttattaacgttgctgttagaAGTTACCC--CAGGACC-CGAGACTAACAGTAACATTTGGTTTGTACGTGGTTGT-GTGGCATTCCATCACACCTA------CGTACAATATA---AAAAGTCAGGAAAAA-TCAAAGGAT--ATGAAAGTGTTTTTC--TTT-T-CATGTTTT----------------CATAACGTAC-CGT-AATC---AAAAGAGTAGAAAGTACGAATGAT--AT-CATTTTTCTG------TGCCCCAGTTTCGAC---ATAT--AAC--TACACAA--TTTT-A----TGT-AAGAAAAAATAATAGT-C----TTTC------G--A---A---TTT------------------------CGA-TAACATAACAT-AAA-AAGAATGACAAATTAT-G-CCACTCACTTATTTTATTTAAGAAGTATGacgtacaatataaaaagtcaggaaaaatcaaaggatatgaaagtgtttttcttttcatgttttcataacgtaccgtaatcaaaagagtagaaagtacgaatgatatcatttttctgtgccccagtttcgacatataactacacaattttatgtaagaaaaaataatagtctttcgaatttcgataacataacataaaaagaatgacaaattatgccactcacttattttatttaagaagtatgaactaataatgagttaaaacggaatgaagaacatcacaatgtattgaagtttctcgacatagatatcttgttgca
gi|3 : acttccattggttactgccaccaaccatgcgtgataacaacagggaagcgctgtgttattaacgttgctgttagaaaagccatagcaattatagtccaaccaCTAAAACTTAAACCTGGTT-ATAACT---TATGTAGTC--CAATCA------AGTTACCC--CAGGACC-CGAAACTAAAAGTAACATTTGGaactaataatgagttaaaacggaatgaagaacatcacaatgtattgaagtttctcgacatagatatcttgttgca
gi|3 : ATGTAGTCCAATCAAGTTACCCCAGGACCCGAAACTAAAAGTAACATTTGGatctatacaataaaaatagtttaggaaaatcgaaggatatgaaagttgtttttttccctgtttttattctaatggttttcataatatactatcatcaaagaagtggatagtacaaatgataaatatatttttctatacctcagtttagacttgctaaacagaactaaatgtttaaacgagtaaacaacatagcattacacaattgtatgacagaatgtgtttttgaattttgattaaaataacatgaaaaagattaacaaattacctcacccacttattttatttaagaagtatgaaccgataatgagtttcaaatagtagatgtgtataatttaaatgaaagctagcag
gi|3 : ctaaaacttaaacctggttataacttTC------TATACAATAAA---AATAGTTTAGGAAAA-TCGAAGGAT--ATGAAA--GTTGTTT--TTT-TCCCTG-TTTTTATTCTAATGGTTTTCATAATATAC-TAT-CATC---AAAGAAGTGGATAGTACAAATGATAAATATATTTTTCTA------TACCTCAGTTTAGAC---TTGCTAAACAGAACTAAATGTTTA-A-ACGAGT-AA-ACAACATAGCATTACACAATTGTATGACAG--A---A---TGT----G----T--TTT-T-GAATTTTGATTAAAATAACATGAAA-AAGATTAACAAATTAC-C-TCACCCACTTATTTTATTTAAGAAGTATGatctatacaataaaaatagtttaggaaaatcgaaggatatgaaagttgtttttttccctgtttttattctaatggttttcataatatactatcatcaaagaagtggatagtacaaatgataaatatatttttctatacctcagtttagacttgctaaacagaactaaatgtttaaacgagtaaacaacatagcattacacaattgtatgacagaatgtgtttttgaattttgattaaaataacatgaaaaagattaacaaattacctcacccacttattttatttaagaagtatgaaccgataatgagtttcaaatagtagatgtgtataatttaaatgaaagctagcag
gi|4 : ctaaaacttaaacctggttataacttatgtagtccaatcaagttaccccaggacccgaaactaaaagtaacatttggaCATCACA------TTACCT--CAAGACCTCGAACCTAAAAGCAACATTTAGTTTGCAAGTGGTTTT-GCGATTCTCCATTACACCTC------TAAATAATATATTTAACAATTTAGGACAG-TCGAAGAAT--ATGAAAGTGTTGTTT--ATT-TT-ATATTTTTTATCCTAAGGGTTTTCATAATGTAC-CAT-CATT---AAAAAAG----------------------TATTTTTCTG------TGCCCCAGGTTCGAC---TAACTAAACAGTACTAAATGTTTT-A-G-GAATAAA-ACAACATATTATTGCCCAATTGTATGCAAG--A----------------------------------------AAAGAATACAA-------ATTACA--TCAC-C-C-----ACTCATTTTATTTAA-AAGTATaaccgataatgagtttcaaatagtagatgtgtataatttaaatgaaagctagcag
gi|5 : ttaaaaatccaacactggctatttatgtgATTCTTTATTACACCTC------TATAAAACATA---AAAAGTTTAAAAAAAATCGAAGAAT--ACGAATGTGTTTTTT--TT----CGTATTTTT-ATCCTAAGGTTTTTCATAATAAAC-CAT-CATC---AAACAAGTATATAGTACAAATGGT--AT--ATTTTTCTA------TGCCCCAGTTTCGAT---TTGCTAAACAGTACTAAATGTTTT-A-ACGAGT-GA-ACAACAT-TTATTACATACCTTTAAGTAAG--A---AAAACTG----AAAAAT--ATT-TCGAATTTCGA-TGAAATAACATAAAAAAAGAATAACAAATTAC-C-CCACCCACCTATTTTATTAGAGAAGTATGtaaccaataatgagttacagatagtagatatgtttacttgtaattgatgctggcagagcat
gi|6 : GGTTTC-GTGATCCCCAATTAAACCTC------TATACAATGTA---AAAAGTTTTGGAAAA-TCGTAGATT--ATGAAAGT-----TG--TTT-TTCATATTTTT-ATCCTAAGGGTTTTCATCATATAC-CAT-CATT---AAAA-AGTAGATAGTATGAATGAT--AT-CATTTTTCTG------TGCCTTAGTTTCGAC---TTGCTAAACAGTACTTTATGTTTT---ACATGT-CA-ACAACATAATATTAAATAATATTATGTAAGAAA---A---TTTAATAA----T--TTTGTTGAATTGCGA-TGAAATAACATAAAA-AATACGAACAAATTAC-C-CCATCAACTTATTTTATTTACGAAGCACGaaccaataatgaatttcaaatagtaggtgtttataatataaatgtagc
gi|7 : TGCCC--CACACCC-CGAAACTAACAGTAACATTTGGTTTGTAAGaaccaagttgataggtgtgtataattttacttgaatg
gi|7 : aaccaGTTT-GTAAGG-TCGAAGTAT--ATGAAAGCGTTTTTC--TTT-TTAATGTTTT----CATAACG--TACCGTAATATAT-AGTACAT----ATATAGGTATATAGTACAAATGAT--AG-TATTTTTCTG------TGCCCCAGTTTCGACATATTACTACACA---------ATTTT-ATGCAAGA-AA-A------AATA----AAAATCTTACG------------------------------------AATTTCGA-TAAAATAACAT-AAA-AAGAATGACAAACTAT-G-CCACGCTCTTATTTTATTTAAGAAGTATGgtcgaagtatatgaaagcgtttttctttttaatgttttcataacgtaccgtaatatatagtacatatataggtatatagtacaaatgatagtatttttctgtgccccagtttcgacatattactacacaattttatgcaagaaaaaataaaaatcttacgaatttcgataaaataacataaaaagaatgacaaactatgccacgctcttattttatttaagaagtatgaaccaatatttggttaaaacggaatgaagaacatctcaatgcattgacgtttctcgacataggtatcttgttgca
gi|8 : aaccatgccccacaccccgaaactaacagtaacatttg--CAGAACC-CGAAACTAACGGTTACATTCGGATTTTAAGTGTTTTTAGCGGCCCTTCATTACACCACAGTGATTATACAATATA---AACAGTTTAGGAAAA-TCGAAAGAT--ATGAAAGTGTaaccaatatttggttaaaacggaatgaagaacatctcaatgcattgacgtttctcgacataggtatcttgttgca
gi|8 : TCATGTGTT--ATCCTGGTGGTTTTCATGAGATACTCG--CATC---ATACAAGCAGATAGTATGGATGAT--CT-CATTTGTATG------TGCCCTAGTTTTGAC---TTGCTAAACAGCACTAAATGTTTTAA-ATAACT-AA-ACAACATTTTATTACATAATTGTATGTgtgtgtgtttgggggttgttgttgttttttgttgtttaattattttttgtgtgtttttttaggggtgggggggtcatgtgttatcctggtggttttcatgagatactcgcatcatacaagcagatagtatggatgatctcatttgtatgtgccctagttttgacttgctaaacagcactaaatgttttaaataactaaacaacattttattacataattgtatgt
gi|9 : cagaacccgaaactaacggttacattcggattttaagtgtttttagcggcccttcattacaccacagtgattatacaatataaacagtttaggaaaatcgaaagatatgaaagtgtgtgtgtgtttgggggttgttgttgttttttgttgtttaattattttttgtgtgtttttttaggggtgggggggAAAACTTA--AACA-TATAAAGATGTATTAAAGTGTTTTTT--------CATGTTTTT-ATCCTAAGGGTTTTCATAATATAC-CAT-CATC---AAAAAAGTA-------TGAATGAT--AT-TATTGTTTTG------TGCACCAGTTTCGAC---TTGCTAAACAGTATTAAATGTTTT-A-AAAATT-AA-ACAGCATATTATTACACAATTTTATTTAAG--AAATA---TTT----ATTG-T--TTT-TCAAATTTCGA-TGAAATAACATAAAA-AAGAATGACAAA-TAC-C-CCACCCACTTATTTTATTTAAGAAGTATG
blockSeqs : T AAGTCG C T G T . . T A A T AGTGAT TTT A GT AA . TT G TT G T A . G AA AT . ATA A TGCA A G T T AAAAACTGAAAAATATTTC T A A CA
blockSeqs : A AAGCCA C T G T . . . A . T . . . . . . CC G TT G . . . G . T . . . ACG . . T T AAAATTTAATAATTTTGTT . A . C
blockSeqs : G . C . . . . . C . A . . . . . . TC A TT T . . . G . C . . . ACC . . A A AAATATTTATTGTTTTTC . G . A
blockSeqs : . . . . A . T . . . . . . TA A TT T . . . T . T . . . ACG . . G C CAAACTTATAATTTATC . A . G
blockSeqs : . . A . C . . . . . . TC A TT G . . . G . C . . . ACG . . T T AATTTTTTTAAC . A . C
blockSeqs : . . C . T . . . . . . T G T G . . . T . T . . . ACA . . T T AATGTGTTTTT . A . C
blockSeqs : . . C . C . . . . . . C G T G . . . G . C . . . ATA . . A T AATTT . A . C
blockSeqs : . . . . . . T G T C . . . . . T . . . AAA . . A T A . . . C
blockSeqs : . . . . . . C . . T . . . . . . . . . GG . . T . . . . . G
blockSeqs : . . C . . G . . . . . . . . . . . T . . . . C
blockSeqs : . . . . . . .
blockSeqCons : C*** ** TC *** ****** AAAACTTATTTTTC***************** C**
originalCons : CTTCCATTGGTTACTNCCACCAACCATGCGTGAAAGTCGTAGC---AAAATATAGTCCAATCAAGTTACCCCAGGACCCGAGACTAAAAGTAACATTTGGTTTGTAAGTGGTTGTGTGGTCTTCCATCACACCTCAGTTACCC--CAGGACC-CGAAACTAANAGTAACATTTGGTTTGTAAGTGGTTTT-GCGATCCTCCATTACACCTC------TATACAATATA---AAAAGTTTAGGAAAA-TCGAAGGAT--ATGAAAGTGTTTTTT--TTT-TTCATGTTTTTTATCCTAAGGGTTTTCATAATATAC-CGT-CATC---AAAAAAGTAGATAGTACGAATGAT--AT-TATTTTTCTG------TGCCCCAGTTTCGAC---TTGCTAAACAGTACTAAATGTTTT-A-ACGAGT-AA-ACAACATANTATTACACAATTTTATGTAAG--A---A---TTT----A----T--TTT-TCGAATTTCGA-TGAAATAACATAAAA-AAGAATAACAAATTAC-C-CCACCCACTTATTTTATTTAAGAAGTATG
finalCons : CTTCCATTGGTTACTNCCACCAACCATGCGTGAAAGTCGTAGC---AAAATATAGTCCAATCAAGTTACCCCAGGACCCGAGACTAAAAGTAACATTTGGTTTGTAAGTGGTTGTGTGGTCTTCCATCACACCTCAGTTACCC--CAGGACC-CGAAACTAANAGTAACATTTGGTTTGTAAGTGGTTTT-GCGATCCTCCATTACACCTC------TATACAATATA---AAAAGTTTAGGAAAA-TCGAAGGAT--ATGAAAGTGTTTTTT--TTT-TTCATGTTTTTTATCCTAAGGGTTTTCATAATATAC-CGT-CATC---AAAAAAGTAGATAGTACGAATGAT--AT-TATTTTTCTG------TGCCCCAGTTTCGAC---TTGCTAAACAGTACTAAATGTTTT-A-ACGAGT-AA-ACAACATANTATTACACAATTTTATGTAAGAAAACTTATTTTTC-----------------GAATTTCGA-TGAAATAACATAAAA-AAGAATAACAAATTACC--CCACCCACTTATTTTATTTAAGAAGTATG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGTGGTCA
Unaligned ( gi|19 ): TTACTATTTATTTGTAAAATGTTTAAACTATAAAGATTA
Alignments
lowQualScore : 222222 1111 111111 11 111111 555555555555555555555555555 11
lowQualScore : 1 111111 7777 0 3 2 3 9999 66 5 1 5 3 111111 777 3 44 55 4 44 1 22 2 3 0 3 555 2 55 77 000000 666 3 4444 3 3 1 3 0 111111111111111111111111111 0 3 11 444
lowQualScore : . ...... .... . . . . .... .. . . . . ...... ... . .. .. . .. . .. . . . . ... . .. .. ...... ... . .... . . . . . ........................... . . .. ...
lowQualScore : 0 222222 2222 6 2 5 2 7777 99 0 0 0 1 555555 000 3 66 55 0 00 2 55 5 3 7 3 888 5 00 66 555555 444 6 2222 6 6 0 5 7 222222222222222222222222222 4 6 55 111
consensus : CTTCCATTGGTTACTNCCACCAACCATGCGTGAAAGTCGTAGC---AAAATATAGTCCAATCAAGTTACCCCAGGACCCGAGACTAAAAGTAACATTTGGTTTGTAAGTGGTTGTGTGGTCTTCCATCACACCTCAGTTACCC--CAGGACC-CGAAACTAANAGTAACATTTGGTTTGTAAGTGGTTTT-GCGATCCTCCATTACACCTC------TATACAATATA---AAAAGTTTAGGAAAA-TCGAAGGAT--ATGAAAGTGTTTTTT--TTT-TTCATGTTTTTTATCCTAAGGGTTTTCATAATATAC-CGT-CATC---AAAAAAGTAGATAGTACGAATGAT--AT-TATTTTTCTG------TGCCCCAGTTTCGAC---TTGCTAAACAGTACTAAATGTTTT-A-ACGAGT-AA-ACAACATANTATTACACAATTTTATGTAAGAAA-AT-TT-----A---T--TTT-T--CGAATTTCGA-TGAAATAACAT-AAAAAAGAATAACAAATTAC-C-CCACCCACTTATTTTATTTAAGAAGTATG
Reference ( family-5738 ) : CTTCCATTGGTTACTNCCACCAACCATGCGTGAAAGTCGTAGC---AAAATATAGTCCAATCAAGTTACCCCAGGACCCGAGACTAAAAGTAACATTTGGTTTGTAAGTGGTTGTGTGGTCTTCCATCACACCTCAGTTACCC--CAGGACC-CGAAACTAANAGTAACATTTGGTTTGTAAGTGGTTTT-GCGATCCTCCATTACACCTC------TATACAATATA---AAAAGTTTAGGAAAA-TCGAAGGAT--ATGAAAGTGTTTTTT--TTT-TTCATGTTTTTTATCCTAAGGGTTTTCATAATATAC-CGT-CATC---AAAAAAGTAGATAGTACGAATGAT--AT-TATTTTTCTG------TGCCCCAGTTTCGAC---TTGCTAAACAGTACTAAATGTTTT-A-ACGAGT-AA-ACAACATANTATTACACAATTTTATGTAAGAAA-AC-TT-----A---T--TTT-T--CGAATTTCGA-TGAAATAACAT-AAAAAAGAATAACAAATTAC-C-CCACCCACTTATTTTATTTAAGAAGTATG
gi|1 : CTTCCAATGGTTACTCCCACCAACCATACGTGAAAGTCATAGTGAAAAAATATAGTCCAATCAAGTTACCCAAGGACCCGAGACTAAAAGTAACATTTGGTTTGTAAGTGGTTGTGTGGTCTTCCATCACACTTCNNNNNNNNNNCAGGACC-CGAGACTAACAGTAACATTTGGTTTGTAAGTGGTTGT-GTGATCCTCCATTACATCTC------TATATATTATA---AAAAGTTTAGGAAAA-TCGAAGGAT--ATGAAAGTGTTTTTT--TTTCTTCATGTTTTTTATCCTGGTGGTTTTCATAATAAAT-CAT-AATCAAAAAAAAAGTAGATAGTACGAATGAT--AT-TATTTTTCTGCCACAATGCCCCGGTTTTGAC---ATGCTAAACAGTGCTAAATGTTTT-A-ACAAGT-AA-CCAACATAATATAACACAATTTTATATATG--A-ACTTT-----T---T--TTT-T--CGAATTTCGA-CGACATGACAT-AAAAAAGAATAACAAATTACTC-CCACCCACTTATCTTGTTTAAAAAGTATG
gi|10 : CTTCCATTGGTTACTTCCACCAACCATGCGTGA------TAAC---AAAAGGTAG
gi|11 : agcctgaaaggctgccagtagtagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTTATCCTGGGGGTTTTCATAATATAC-CAT-CGTC---AAAAAAGTAGATAGTTCGAATGAT--AT---TTTTTCTA------TGTCCCAGTTTCGAC---TTGATTAACAGTACTAAATGTTTT-A-ACGGGT--T-ATAACATATTATTACACAATTGTATGTAAGCAA-AC-TT-----A---TAATTTAT--CGAATTTTGA-TGAAATAACGT--AAACAGAATAACAAATTAC-C-CCACACACTTATCTTATTTAAGAAgcactgtgttaaatgttgctgtcag
gi|12 : tgAGTCCGAATTAG--GT-TACGTT-CTG------TGCCTCAGTTTTGAC---TTGCTAAACGGTACTAAATATTTT-A-ACCAGT-AA-ACAACATATTATTATACAATCTTATGTAAGAA-----TT---------T--TTT-TAACGAATTTTGA-AGAAATAACAT-AAAAAAGAATGACATTTTAC-CACAATCGACTTATTTCATTCAAGAAGTATGt
gi|13 : TCAGTAACCA--CAAGGCC-AGAAGCTAAAAGTAACATTTGGTTTGTAAGTGGTTTT-GTGATCGTCCATTACACCTC------TATACATTATA---ACAAGTTTAGGAAAG-TCTAAGGAT--ATCATGTTGTGTTTT--TTT-TTTAT-CTTTTTATCGTAAGGGTTGTTATAATATAA-CAT-TATA---AAAgaccaataatgagttactactatatct
gi|14 : gttgcagCTTCCATTGGTTACTAACACCAACCATGCGTGA------TAAC---AAAAg
gi|14 : taAAAGTCGTAG----AAAATATAGTCCAATCAAGTAACCCCAGGACCCGAGACTAACAGTAACATTTGGTTTGTAAGTGGTTGTGTGGTCTTCCATCACACCTgggcggcactatgttaaatgttgctgttagaaaagtcgtagaaaatatagtccaatcaagtaaccccaggacccgagactaacagtaacatttggtttgtaagtggttgtgtggtcttccatcacacct
gi|15 : tacttccattggttactaacaccaaccatgcgtgataacaaaagggcggcactatgttaaatgttgctgttagaGTGGTTTT-GTGATCGTCCCTTACACATC------TATACAATATA---AAAAGTTTATGAAAA-TCAGAGGAT--ATGAAAGTGATTTTTAATGT-TT----TTTTTTATCCTAATGATTCTCATAATA-AT-CGT-GATC---AA
gi|16 : gTTTGA-TGAAATAACAT-AAAAAAGAATAACAAATTAC-A-CCACCCCCTTATTTTATTTAAGAAGTATG
gi|18 : cAGTTACCC--CAGGACC-CGAAACTAAAAGTAACATTTGGTTTATAAGTGGTTTT-GATATCCTTCATTACACCTC------TTTAGAATAT----AAAAGTTTAGGAAAA-TTGAAAGAT--ATGAAAGaaccaataatgagtttcaaatagcaggtgtgaataatttaaacagaagttagcag
gi|2 : atcaCTTCCATTGGTTACTGCCACCAACCATGCGTGA
gi|2 : aAAAGCCATAGC---AAT-TATAGTCCAACCAAGTTACCCCAGGACCCGAGACTAACAGTAACATTTGGTTTGTACGTGGTTGTGTGGCATTCCATCACACCTtaacaacagggaagcgctgtgttattaacgttgctgttagaaaagccatagcaattatagtccaaccaagttaccccaggacccgagactaacagtaacatttggtttgtacgtggttgtgtggcattccatcacacctacgtacaatataaaaagtcaggaaaaatcaaaggatatgaaagtgtttttcttttcatgttttcataacgtaccgtaatcaaaagagtagaaagtacgaatgatatcatttttctgtgccccagtttcgacatataactacacaattttatgtaagaaaaaataatagtctttcgaatttcgataacataacataaaaagaatgacaaattatgccactcacttattttatttaagaagtatgaactaataatgagttaaaacggaatgaagaacatcacaatgtattgaagtttctcgacatagatatcttgttgca
gi|2 : acttccattggttactgccaccaaccatgcgtgataacaacagggaagcgctgtgttattaacgttgctgttagaAGTTACCC--CAGGACC-CGAGACTAACAGTAACATTTGGTTTGTACGTGGTTGT-GTGGCATTCCATCACACCTA------CGTACAATATA---AAAAGTCAGGAAAAA-TCAAAGGAT--ATGAAAGTGTTTTTC--TTT-T-CATGTTTT----------------CATAACGTAC-CGT-AATC---AAAAGAGTAGAAAGTACGAATGAT--AT-CATTTTTCTG------TGCCCCAGTTTCGAC---ATAT--AAC--TACACAA--TTTT-A----TGT-AAGAAAAAATAATAGT-C----TTTC------GAA--------------------TT-T--CGA--------TAACATAACAT--AAAAAGAATGACAAATTAT-G-CCACTCACTTATTTTATTTAAGAAGTATGacgtacaatataaaaagtcaggaaaaatcaaaggatatgaaagtgtttttcttttcatgttttcataacgtaccgtaatcaaaagagtagaaagtacgaatgatatcatttttctgtgccccagtttcgacatataactacacaattttatgtaagaaaaaataatagtctttcgaatttcgataacataacataaaaagaatgacaaattatgccactcacttattttatttaagaagtatgaactaataatgagttaaaacggaatgaagaacatcacaatgtattgaagtttctcgacatagatatcttgttgca
gi|3 : acttccattggttactgccaccaaccatgcgtgataacaacagggaagcgctgtgttattaacgttgctgttagaaaagccatagcaattatagtccaaccaCTAAAACTTAAACCTGGTT-ATAACT---TATGTAGTC--CAATCA------AGTTACCC--CAGGACC-CGAAACTAAAAGTAACATTTGGaactaataatgagttaaaacggaatgaagaacatcacaatgtattgaagtttctcgacatagatatcttgttgca
gi|3 : ATGTAGTCCAATCAAGTTACCCCAGGACCCGAAACTAAAAGTAACATTTGGatctatacaataaaaatagtttaggaaaatcgaaggatatgaaagttgtttttttccctgtttttattctaatggttttcataatatactatcatcaaagaagtggatagtacaaatgataaatatatttttctatacctcagtttagacttgctaaacagaactaaatgtttaaacgagtaaacaacatagcattacacaattgtatgacagaatgtgtttttgaattttgattaaaataacatgaaaaagattaacaaattacctcacccacttattttatttaagaagtatgaaccgataatgagtttcaaatagtagatgtgtataatttaaatgaaagctagcag
gi|3 : ctaaaacttaaacctggttataacttTC------TATACAATAAA---AATAGTTTAGGAAAA-TCGAAGGAT--ATGAAA--GTTGTTT--TTT-TCCCTG-TTTTTATTCTAATGGTTTTCATAATATAC-TAT-CATC---AAAGAAGTGGATAGTACAAATGATAAATATATTTTTCTA------TACCTCAGTTTAGAC---TTGCTAAACAGAACTAAATGTTTA-A-ACGAGT-AA-ACAACATAGCATTACACAATTGTATG--ACAGA-AT-GT-----G---T--TTT-T---GAATTTTGATTAAAATAACAT-GAAAAAGATTAACAAATTAC-C-TCACCCACTTATTTTATTTAAGAAGTATGatctatacaataaaaatagtttaggaaaatcgaaggatatgaaagttgtttttttccctgtttttattctaatggttttcataatatactatcatcaaagaagtggatagtacaaatgataaatatatttttctatacctcagtttagacttgctaaacagaactaaatgtttaaacgagtaaacaacatagcattacacaattgtatgacagaatgtgtttttgaattttgattaaaataacatgaaaaagattaacaaattacctcacccacttattttatttaagaagtatgaaccgataatgagtttcaaatagtagatgtgtataatttaaatgaaagctagcag
gi|4 : ctaaaacttaaacctggttataacttatgtagtccaatcaagttaccccaggacccgaaactaaaagtaacatttggaCATCACA------TTACCT--CAAGACCTCGAACCTAAAAGCAACATTTAGTTTGCAAGTGGTTTT-GCGATTCTCCATTACACCTC------TAAATAATATATTTAACAATTTAGGACAG-TCGAAGAAT--ATGAAAGTGTTGTTT--ATT-TT-ATATTTTTTATCCTAAGGGTTTTCATAATGTAC-CAT-CATT---AAAAAAG----------------------TATTTTTCTG------TGCCCCAGGTTCGAC---TAACTAAACAGTACTAAATGTTTT-A-G-GAATAAA-ACAACATATTATTGCCCAATTGTATGCAAGAAA-A------------------------GAAT-------------ACA---------AATTAC--ATCAC-C------CACTCATTTTATTTAA-AAGTATaaccgataatgagtttcaaatagtagatgtgtataatttaaatgaaagctagcag
gi|5 : ttaaaaatccaacactggctatttatgtgATTCTTTATTACACCTC------TATAAAACATA---AAAAGTTTAAAAAAAATCGAAGAAT--ACGAATGTGTTTTTT--TT----CGTATTTTT-ATCCTAAGGTTTTTCATAATAAAC-CAT-CATC---AAACAAGTATATAGTACAAATGGT--AT--ATTTTTCTA------TGCCCCAGTTTCGAT---TTGCTAAACAGTACTAAATGTTTT-A-ACGAGT-GA-ACAACAT-TTATTACATACCTTTAAGTAAGAAA-AA-CTGAAAAA---T--ATT-T--CGAATTTCGA-TGAAATAACATAAAAAAAGAATAACAAATTAC-C-CCACCCACCTATTTTATTAGAGAAGTATGtaaccaataatgagttacagatagtagatatgtttacttgtaattgatgctggcagagcat
gi|6 : GGTTTC-GTGATCCCCAATTAAACCTC------TATACAATGTA---AAAAGTTTTGGAAAA-TCGTAGATT--ATGAAAGT-----TG--TTT-TTCATATTTTT-ATCCTAAGGGTTTTCATCATATAC-CAT-CATT---AAAA-AGTAGATAGTATGAATGAT--AT-CATTTTTCTG------TGCCTTAGTTTCGAC---TTGCTAAACAGTACTTTATGTTTT---ACATGT-CA-ACAACATAATATTAAATAATATTATGTAAGAAA-AT-TTAATA-A---T--TTTGT--TGAATTGCGA-TGAAATAACAT-AAAAAATACGAACAAATTAC-C-CCATCAACTTATTTTATTTACGAAGCACGaaccaataatgaatttcaaatagtaggtgtttataatataaatgtagc
gi|7 : TGCCC--CACACCC-CGAAACTAACAGTAACATTTGGTTTGTAAGaaccaagttgataggtgtgtataattttacttgaatg
gi|7 : aaccaGTTT-GTAAGG-TCGAAGTAT--ATGAAAGCGTTTTTC--TTT-TTAATGTTTT----CATAACG--TACCGTAATATAT-AGTACAT----ATATAGGTATATAGTACAAATGAT--AG-TATTTTTCTG------TGCCCCAGTTTCGACATATTACTACACA---------ATTTT-ATGCAAGA-AA-A------AATA----AAAATCTTACG------A-AT-TT--------------------------CGA-TAAAATAACAT--AAAAAGAATGACAAACTAT-G-CCACGCTCTTATTTTATTTAAGAAGTATGgtcgaagtatatgaaagcgtttttctttttaatgttttcataacgtaccgtaatatatagtacatatataggtatatagtacaaatgatagtatttttctgtgccccagtttcgacatattactacacaattttatgcaagaaaaaataaaaatcttacgaatttcgataaaataacataaaaagaatgacaaactatgccacgctcttattttatttaagaagtatgaaccaatatttggttaaaacggaatgaagaacatctcaatgcattgacgtttctcgacataggtatcttgttgca
gi|8 : aaccatgccccacaccccgaaactaacagtaacatttg--CAGAACC-CGAAACTAACGGTTACATTCGGATTTTAAGTGTTTTTAGCGGCCCTTCATTACACCACAGTGATTATACAATATA---AACAGTTTAGGAAAA-TCGAAAGAT--ATGAAAGTGTaaccaatatttggttaaaacggaatgaagaacatctcaatgcattgacgtttctcgacataggtatcttgttgca
gi|8 : TCATGTGTT--ATCCTGGTGGTTTTCATGAGATACTCG--CATC---ATACAAGCAGATAGTATGGATGAT--CT-CATTTGTATG------TGCCCTAGTTTTGAC---TTGCTAAACAGCACTAAATGTTTTAA-ATAACT-AA-ACAACATTTTATTACATAATTGTATGTgtgtgtgtttgggggttgttgttgttttttgttgtttaattattttttgtgtgtttttttaggggtgggggggtcatgtgttatcctggtggttttcatgagatactcgcatcatacaagcagatagtatggatgatctcatttgtatgtgccctagttttgacttgctaaacagcactaaatgttttaaataactaaacaacattttattacataattgtatgt
gi|9 : cagaacccgaaactaacggttacattcggattttaagtgtttttagcggcccttcattacaccacagtgattatacaatataaacagtttaggaaaatcgaaagatatgaaagtgtgtgtgtgtttgggggttgttgttgttttttgttgtttaattattttttgtgtgtttttttaggggtgggggggAAAACTTA--AACA-TATAAAGATGTATTAAAGTGTTTTTT--------CATGTTTTT-ATCCTAAGGGTTTTCATAATATAC-CAT-CATC---AAAAAAGTA-------TGAATGAT--AT-TATTGTTTTG------TGCACCAGTTTCGAC---TTGCTAAACAGTATTAAATGTTTT-A-AAAATT-AA-ACAGCATATTATTACACAATTTTATTTAAGAAATAT-TT-----ATTGT--TTT-T--CAAATTTCGA-TGAAATAACAT-AAAAAAGAATGACAAA-TAC-C-CCACCCACTTATTTTATTTAAGAAGTATG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGTGGTCA
Unaligned ( gi|19 ): TTACTATTTATTTGTAAAATGTTTAAACTATAAAGATTA