lowQualScore                  :                                      2     66  2        2      6         5                     6 
lowQualScore                  :                                      .     ..  .        .      .         .                     . 
lowQualScore                  :                                      1     11  2        1      0         0                     0 
consensus                     :                                 ATGAANTTTACT-ATGGATCCTCC-GAAGGGAAGAAAATAT-AATATCAATGTCTATATTAAATT
Reference ( gi|6 )            :                                 ATGAATTTTACC-ATGGATCCTCC-GAAGGGGAGAAAATAT-AATATCAATGTCTATATTAAACT
gi|2                          :                                 ATGAATTTTACT-ATTGATCTTCC-GAAGGGAAGAAAATAT-AATATTAATGTCTATATT
gi|7                          :                     ttatattcatcaATGAATTT-ACCTATGGATCTTCC-GAAGGGAAGAAAATAT-AATACCAATCTCTATATTAAA
gi|8                          :                               atATAAAATTTACT-ATCAATCTTCC-GAAGGGAAAAAAATAT-TATATCAATATATATAT
gi|1                          :                                 ATGAATTTTACA-ATGGAACCTCG-GAAGGGAAGAAAATAT-AA
gi|4                          : atttgcaaataaaactatttacatacattagtATGAAATTTACT-ATGGATCCCCG-GAAGGGAAGAAAATAT-AA
gi|19                         :          acatttaaaacttgttcatagtaATGAATTTTACT-ACGGATTCTCC-GAAGGGAAGAAAAata
gi|3                          :                                 ATGAATTATACT-ATGAATCCTCC-AAAGGGAGGATAATTT-AATATTATTG---ATATT
gi|20                         :                              aatATGAAATTTACT-ATCAATCTTCC-GAAGGGAAGAAAtatttatatgt
gi|18                         :                                 ATAAAATTTACT-ATCAATCTTCC-GAAGGGAAGAAAA
gi|11                         :                                  TAAGTTTTACT-ATATATCCTCC-GAAGGGAAGGAAATAT-AATACTAATTTCTATAa
gi|12                         :                                   GAATTAT-CT-ATCAATCTTCC-AA---GAAGAAAATAT-AATATCAATGTCTATAATAAA
gi|10                         :                                    AAATTTACT-ATCAATCTTCC-GAAGGGAAGAAAATAT-AATATCAATGTCTAT
gi|9                          :                                   aAAATTTACT-ATAAATCTTCC-GAAGGGAAGAAAATAT-AATATCAATGTCTTTAATAAtat
gi|5                          :                                     ATTTTGCT-ATGGATCCTCTGGAAGTGAAGAAAATAT-AA-ATCAATGTTTAGATTAAAT
gi|13                         :                                    cgtTTTACT-ATCAATCTTCC-GAAGGGAAGAAAATAT-AATATCAATATCTATAATAct
gi|15                         :                                       aTTACC-ATGGATCCTCC-GGAGGGAAGAAAATAT-AATATCAATGGCTATATTA
gi|14                         :                                         TACT-ATCGATCTTCC-GAAGGGAAGATAATAT-AATATCTATGTCTATATTAAA
gi|16                         :                                           CC-ATGGATCTTCC-GAAGGAAAGAAGGTGTAAATACCAATGTCTGTATTA
gi|17                         :                                           CT-ATGGGTCCTTC-GAAGAGAAGAAAATATAAACACCAATGTCtc

lowQualScore                  :                                   3     2   1        2                4                       
lowQualScore                  :                                   .     .   .        .                .                       
lowQualScore                  :                                   6     0   6        0                7                       
consensus                     :                              ATGAANTTTAC-TATGGATCCTCC-GAAGGGAAGAAAATAT-AATATCAATGTCTATATTAAACT
Reference ( family-5506 )     :                              ATGAANTTTAC-TATGGATCCTCC-GAAGGGAAGAAAATAT-AATATCAATGTCTATATTAAATT
gi|1                          :                              ATGAATTTTAC-AATGGAACCTCG-GAAGGGAAGAAAATAT-AA
gi|10                         : atttgcaaataaaactatttacatacattagtAAATTTAC-TATCAATCTTCC-GAAGGGAAGAAAATAT-AATATCAATGTCTAT
gi|11                         :                              aTAAGTTTTAC-TATATATCCTCC-GAAGGGAAGGAAATAT-AATACTAATTTCTATAtat
gi|12                         :                                GAATTAT-C-TATCAATCTTCC-AA---GAAGAAAATAT-AATATCAATGTCTATAATAAA
gi|13                         :                                    TTTAC-TATCAATCTTCC-GAAGGGAAGAAAATAT-AATATCAATATCTATAATA
gi|14                         :                                     aTAC-TATCGATCTTCC-GAAGGGAAGATAATAT-AATATCTATGTCTATATTAAA
gi|15                         :                                     TTAC-CATGGATCCTCC-GGAGGGAAGAAAATAT-AATATCAATGGCTATATTA
gi|16                         :                                        C-CATGGATCTTCC-GAAGGAAAGAAGGTGTAAATACCAATGTCTGTATTA
gi|17                         :                                        C-TATGGGTCCTTC-GAAGAGAAGAAAATATAAACACCAATGTCtc
gi|18                         :                              ATAAAATTTAC-TATCAATCTTCC-GAAGGGAAGAAAA
gi|19                         :                              ATGAATTTTAC-TACGGATTCTCC-GAAGGGAAGAAAAa
gi|2                          :                              ATGAATTTTAC-TATTGATCTTCC-GAAGGGAAGAAAATAT-AATATTAATGTCTATATT
gi|20                         :                  ttatattcatcaATGAAATTTAC-TATCAATCTTCC-GAAGGGAAGAAA
gi|3                          :                              ATGAATTATAC-TATGAATCCTCC-AAAGGGAGGATAATTT-AATATTATTG---ATATT
gi|4                          :                           aatATGAAATTTAC-TATGGATCCCCG-GAAGGGAAGAAAATAT-AAtatttatatgt
gi|5                          :           acatttaaaacttgttcatagtaATTTTGC-TATGGATCCTCTGGAAGTGAAGAAAATAT-AA-ATCAATGTTTAGATTAAATTata
gi|6                          :                           cgtATGAATTTTAC-CATGGATCCTCC-GAAGGGGAGAAAATAT-AATATCAATGTCTATATTAAACTct
gi|7                          :                              ATGAA-TTTACCTATGGATCTTCC-GAAGGGAAGAAAATAT-AATACCAATCTCTATATTAAA
gi|8                          :                            atATAAAATTTAC-TATCAATCTTCC-GAAGGGAAAAAAATAT-TATATCAATATATATAT
gi|9                          :                                 AAATTTAC-TATAAATCTTCC-GAAGGGAAGAAAATAT-AATATCAATGTCTTTAATAA

lowQualScore                  :                                   3     2   1        2                4                       
lowQualScore                  :                                   .     .   .        .                .                       
lowQualScore                  :                                   6     0   6        0                7                       
consensus                     :                              ATGAANTTTAC-TATGGATCCTCC-GAAGGGAAGAAAATAT-AATATCAATGTCTATATTAAACT
Reference ( family-5506 )     :                              ATGAANTTTAC-TATGGATCCTCC-GAAGGGAAGAAAATAT-AATATCAATGTCTATATTAAACT
gi|1                          :                              ATGAATTTTAC-AATGGAACCTCG-GAAGGGAAGAAAATAT-AA
gi|10                         : atttgcaaataaaactatttacatacattagtAAATTTAC-TATCAATCTTCC-GAAGGGAAGAAAATAT-AATATCAATGTCTAT
gi|11                         :                              aTAAGTTTTAC-TATATATCCTCC-GAAGGGAAGGAAATAT-AATACTAATTTCTATAtat
gi|12                         :                                GAATTAT-C-TATCAATCTTCC-AA---GAAGAAAATAT-AATATCAATGTCTATAATAAA
gi|13                         :                                    TTTAC-TATCAATCTTCC-GAAGGGAAGAAAATAT-AATATCAATATCTATAATA
gi|14                         :                                     aTAC-TATCGATCTTCC-GAAGGGAAGATAATAT-AATATCTATGTCTATATTAAA
gi|15                         :                                     TTAC-CATGGATCCTCC-GGAGGGAAGAAAATAT-AATATCAATGGCTATATTA
gi|16                         :                                        C-CATGGATCTTCC-GAAGGAAAGAAGGTGTAAATACCAATGTCTGTATTA
gi|17                         :                                        C-TATGGGTCCTTC-GAAGAGAAGAAAATATAAACACCAATGTCtc
gi|18                         :                              ATAAAATTTAC-TATCAATCTTCC-GAAGGGAAGAAAA
gi|19                         :                              ATGAATTTTAC-TACGGATTCTCC-GAAGGGAAGAAAAa
gi|2                          :                              ATGAATTTTAC-TATTGATCTTCC-GAAGGGAAGAAAATAT-AATATTAATGTCTATATT
gi|20                         :                  ttatattcatcaATGAAATTTAC-TATCAATCTTCC-GAAGGGAAGAAA
gi|3                          :                              ATGAATTATAC-TATGAATCCTCC-AAAGGGAGGATAATTT-AATATTATTG---ATATT
gi|4                          :                           aatATGAAATTTAC-TATGGATCCCCG-GAAGGGAAGAAAATAT-AAtatttatatgt
gi|5                          :           acatttaaaacttgttcatagtaATTTTGC-TATGGATCCTCTGGAAGTGAAGAAAATAT-AA-ATCAATGTTTAGATTAAATTata
gi|6                          :                           cgtATGAATTTTAC-CATGGATCCTCC-GAAGGGGAGAAAATAT-AATATCAATGTCTATATTAAACTct
gi|7                          :                              ATGAA-TTTACCTATGGATCTTCC-GAAGGGAAGAAAATAT-AATACCAATCTCTATATTAAA
gi|8                          :                            atATAAAATTTAC-TATCAATCTTCC-GAAGGGAAAAAAATAT-TATATCAATATATATAT
gi|9                          :                                 AAATTTAC-TATAAATCTTCC-GAAGGGAAGAAAATAT-AATATCAATGTCTTTAATAA


blockSeqs                     :                                   A     C   C        G                A
blockSeqs                     :                                   T     .   A        .                A
blockSeqs                     :                                   T     .   C        .                .
blockSeqs                     :                                   A     .   C        .                .
blockSeqs                     :                                   T     .   C        .                .
blockSeqs                     :                                   T     .   G        .                .
blockSeqs                     :                                   A     .   G        .                .
blockSeqs                     :                                   T     .   G        .                .
blockSeqs                     :                                   A     .   C        .                .
blockSeqs                     :                                   T     .   G        .                .
blockSeqs                     :                                   T     .   T        .                .
blockSeqs                     :                                   A     .   C        .                .
blockSeqs                     :                                   A     .   G        .                .
blockSeqs                     :                                   .     .   G        .                .
blockSeqs                     :                                         .   G        .                .
blockSeqs                     :                                         .   G        .                .
blockSeqs                     :                                         .   G        .                 
blockSeqs                     :                                         .   C        .                 
blockSeqs                     :                                         .   A        .                 


blockSeqCons                  :                              
originalCons                  :                              ATGAANTTTAC-TATGGATCCTCC-GAAGGGAAGAAAATAT-AATATCAATGTCTATATTAAACT
finalCons                     :                              ATGAANTTTAC-TATGGATCCTCC-GAAGGGAAGAAAATAT-AATATCAATGTCTATATTAAACT

lowQualScore                  :                                   3     2   1        2                4                       
lowQualScore                  :                                   .     .   .        .                .                       
lowQualScore                  :                                   6     0   6        0                7                       
consensus                     :                              ATGAANTTTAC-TATGGATCCTCC-GAAGGGAAGAAAATAT-AATATCAATGTCTATATTAAACT
Reference ( family-5506 )     :                              ATGAANTTTAC-TATGGATCCTCC-GAAGGGAAGAAAATAT-AATATCAATGTCTATATTAAACT
gi|1                          :                              ATGAATTTTAC-AATGGAACCTCG-GAAGGGAAGAAAATAT-AA
gi|10                         : atttgcaaataaaactatttacatacattagtAAATTTAC-TATCAATCTTCC-GAAGGGAAGAAAATAT-AATATCAATGTCTAT
gi|11                         :                              aTAAGTTTTAC-TATATATCCTCC-GAAGGGAAGGAAATAT-AATACTAATTTCTATAtat
gi|12                         :                                GAATTAT-C-TATCAATCTTCC-AA---GAAGAAAATAT-AATATCAATGTCTATAATAAA
gi|13                         :                                    TTTAC-TATCAATCTTCC-GAAGGGAAGAAAATAT-AATATCAATATCTATAATA
gi|14                         :                                     aTAC-TATCGATCTTCC-GAAGGGAAGATAATAT-AATATCTATGTCTATATTAAA
gi|15                         :                                     TTAC-CATGGATCCTCC-GGAGGGAAGAAAATAT-AATATCAATGGCTATATTA
gi|16                         :                                        C-CATGGATCTTCC-GAAGGAAAGAAGGTGTAAATACCAATGTCTGTATTA
gi|17                         :                                        C-TATGGGTCCTTC-GAAGAGAAGAAAATATAAACACCAATGTCtc
gi|18                         :                              ATAAAATTTAC-TATCAATCTTCC-GAAGGGAAGAAAA
gi|19                         :                              ATGAATTTTAC-TACGGATTCTCC-GAAGGGAAGAAAAa
gi|2                          :                              ATGAATTTTAC-TATTGATCTTCC-GAAGGGAAGAAAATAT-AATATTAATGTCTATATT
gi|20                         :                  ttatattcatcaATGAAATTTAC-TATCAATCTTCC-GAAGGGAAGAAA
gi|3                          :                              ATGAATTATAC-TATGAATCCTCC-AAAGGGAGGATAATTT-AATATTATTG---ATATT
gi|4                          :                           aatATGAAATTTAC-TATGGATCCCCG-GAAGGGAAGAAAATAT-AAtatttatatgt
gi|5                          :           acatttaaaacttgttcatagtaATTTTGC-TATGGATCCTCTGGAAGTGAAGAAAATAT-AA-ATCAATGTTTAGATTAAATTata
gi|6                          :                           cgtATGAATTTTAC-CATGGATCCTCC-GAAGGGGAGAAAATAT-AATATCAATGTCTATATTAAACTct
gi|7                          :                              ATGAA-TTTACCTATGGATCTTCC-GAAGGGAAGAAAATAT-AATACCAATCTCTATATTAAA
gi|8                          :                            atATAAAATTTAC-TATCAATCTTCC-GAAGGGAAAAAAATAT-TATATCAATATATATAT
gi|9                          :                                 AAATTTAC-TATAAATCTTCC-GAAGGGAAGAAAATAT-AATATCAATGTCTTTAATAA