lowQualScore : 1 444444 6666666 8 11 333333 222 222 88 1
lowQualScore : . ...... ....... . .. ...... ... ... .. .
lowQualScore : 6 888888 6666666 3 55 333333 000 000 55 1
consensus : ATACTGAGTTC------CAAAA-------GTTTAGTCGGTACTTTCATGCAAGTT------TAAC---TA---TAATAC-AAAATAAGATTTC
Reference ( gi|16 ) : ATACTGAGTTC------CAAAA-------GTTCAGTCAGTATTTTCATGCAAGTT------TAAC---TA---TAATAT-AAAATAAGATTTC
gi|11 : ATACTGAGATC------CAAAA-------GTTAAGTCGGTACTTTCATGCAAATT------TAAC---TA---TAATAC-AAAATAAGATATC
gi|21 : ATACTGAGTTC------CAAAA-------GTTTTGTTGGTATTTTCATGCAAGTT------TAAC---TA---TAATAC-AAAAAAAGAT
gi|2 : tATACTGAGTTC------CAAAATCCAAATGTTTTGTCAGTATTT-CATGCAAGTT------TAAC---TA---TAATAC-AAAAAAAGATTTC
gi|13 : catATACTGAGTTC------CAAAATT-----GTTTAG---GTATTTTCATGCAAGTT------TAAC---TT---TAATAC-AAAAAAAGATTTCg
gi|17 : ATACTGAGTTC------CAAAA-------TTTT-GTCGGTATTTTCATGCAAGTT------TAAC---TA---TAATACAAAAATAA-ATTTg
gi|6 : tATACCGAGTTC------CAAAA-------GTTTAGTCGATACTTTCATGCAAGTT------GAAC---TA---TAATAC-GATATATGATTTCg
gi|8 : gtATACTGAGATC------CAAAA-------TTTTAGTCGGTACTTTCATGCACGTT------TAAC---TA---TAATAC-ATAATAACATTTCa
gi|23 : taATACTGAGTTC------CAAAA-------GTTAAGTTGATATTTTCATGCAAGTT------TAAC---TT---TATTAC-AAAA-AAGATTg
gi|12 : ATACTGAGATC------CAAAA-------GCTAAATTAGTACTTTCATGCAAGTT------GAAC---TA---TAATAC-AAAATAAGAATT
gi|15 : tATGCTGAGTTC------CAAAA-------GTTTAAACGGTATTTTCATGCACGAT------TAAC---TA---TAATAC-AAAAAAAGATTT
gi|9 : ATGCTGAGTTC------CAAAA-------GTTTAAACGGTATTTTCATGCACGAT------TAAC---TA---TAATAC-AAAAAAAGATTTt
gi|14 : tATACTGTGTTC------CGAAA-------GTTGTGTCGCTATTTTCATGCAAGTT------TAAC---TA---TAATAC-AAAAAAAAATTt
gi|10 : atATACTGAGATC------CAAAA-------GTTAAGTCGCTGCTTTCATGCAAGTT------GAAC---TA---TAATAC-AAAATACGA
gi|25 : tATACTGAGTTC------CAAAA-------GTTTAGTCGGTA-TTTCATGCATGTT------TAAC---TATACTAGTAT-AAAAAAAata
gi|3 : tATACTGAGATCGTGGGCCAAAC-------GTTTAGTCGGTACGTTCATGCAAATT------TAACTATTA---TAATAT-AAAATAAGATTTC
gi|18 : ATACTGAAAAC------AAAAA-------GTTTAGTCACCCCTTTCATGTAAGTT------TAAC---TA---TAATAC-AAAATAAGATTTg
gi|41 : ACACTGAGTTC------C-AAA-------GTTTTCTCGGTATTTCCATGCA
gi|7 : atTACTGAGTTC------CAAAA-------GTTTTGTCTCTATTTTCATGCAAGTT------TACT---TA---TAATAC-AAAAAAAGATTTC
gi|24 : attTACTGAGATC------TAAAA-------GTTTCGTCGGTATTCTCGTTTAAGTT------TAAC---TA---CAATAC-AA---AAGATTTg
gi|26 : gACTGAGTTC------CAATA-------GTTTTGTTGTTTTTTTCATGCATTTT------TAAC---TA---TAA-A--AAAAAAATATTTCt
gi|20 : CTGAGATC------CAAAA-------GTTTAGTCGGTACTTTCATGCAAGTT------AATC---TA---TAATGC-AAAATAAGATTTCg
gi|28 : TGAGATC------CAAAA-------ATT-AATCGGTTCTATCCTGCAAGTT------TAAC---TT---TAATAT-AAAATAAGATTTCg
gi|22 : TC------CAAAA-------GTTTAGTCGGTACTTCTATGCAAGTT------TAAC---TA---CAATAC-AGAATAAGATTTCg
gi|27 : ttata------CAAGAC------GTTTAGTCATCATTTTCATGCAAGTA------TGAC---TA---TATTAC-CAAATAAg
gi|37 : atactcaaagAAAA-------GTTTAGTCAGTATTTTCATGCAATTA------TAAT---TA---TAATTT-GAAATAAGATTTCta
gi|31 : AAAA-------GTTTAGTCAGTATTTTCATGCAAGTA------TAAG---CA---TGATA--AAAAa
gi|32 : tatatacttagaagaAAAA-------GTTTAGTCACCAATTTCATGCAAGTG------TAAC---TA---TGATAC-AAAATg
gi|29 : tatactcaaaagaAAAA-------GTTTAGTCATTACTTTCAAGCAGGTA------TAAC---AT---TAATAC-AAAATAAAATTT
gi|33 : tcaaaaggAAAA-------ATTTAGTCACAAGTTTCATGCAGGTA------TAAC---TA---TAATAC-AAAA
gi|34 : attcttaaaagaAAAA-------GTTTAGTCACCATTTTCCTGCAAGCA------TAAC---TA---AAATAC----ACAAGATTTaa
gi|36 : aaaaagaAAAA-------GTTTAGTCACCATTTTCCTGCAATCA------TAAC---TA---AAATAC-A
gi|1 : atacccaaaaagaAAAA-------GTTTGGTCACTACTGTCATGACAGTTCCGGTATAAC---TA---GAATACAAAAATAAGATc
gi|38 : ttgtatactcaaaata-------GTTTTGTCAGTATTGTCATGCACGTA------TAAC---TA---TTATAC-AAAATTAGATTTgt
gi|30 : at-------GTTTAGTCACCACTTTCATGAAAGTA------AAAT---GA---TAATAC-AAAATAA-ATTTt
gi|39 : tcaaaagaaattTTTAGTCGCCACCTTCATGCAAGTA------TAAC---TA---CAATAC-AAAATATGATTTt
gi|40 : ACTTTCATGCAAGTA------TAAC---TA---CAACAC-AAAATAAGATTT
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): TTCAAAATAAAATGTTTAGTCCCCACTTTCAAGCAAGCACAAAATGATACAAATTAATATTCGATGTTTTATTA
Unaligned ( gi|5 ): CTAAATATACTCAAAAGAAGAAGTCTAGCCACCCTCTTCATTTAGGTATAACAATAATGCAAAACAATATATC
Unaligned ( gi|19 ): TGTGCTCACAAATAAAACTTTAGTCACCAATTTCATACAAGTCAAACTGTAATACAAAATCAGAT
Unaligned ( gi|35 ): ACTCGAAAGCAAATGTTTAGTCGCCACATTCATGCAAGTATAACAATAACGCCAAATA
Alignments
lowQualScore : 1 444444 6666666 1 1 3333333 111 111 2 0
lowQualScore : . ...... ....... . . ....... ... ... . .
lowQualScore : 2 444444 1111111 4 9 3333333 888 888 1 9
consensus : ATACTGAGTTC------CAAAA-------GTTTAGTCGGTACTTTCATGCAAGTT------TAAC---TA---TAATAC-AAAATAAGATTTC
Reference ( family-5473 ) : ATACTGAGTTC------CAAAA-------GTTTAGTCGGTACTTTCATGCAAGTT------TAAC---TA---TAATAC-AAAATAAGATTTC
gi|1 : AAAA-------GTTTGGTCACTACTGTCATGACAGTTCCGGTATAAC---TA---GAATACAAAAATAAGAT
gi|10 : ttgtatactcaaaataATACTGAGATC------CAAAA-------GTTAAGTCGCTGCTTTCATGCAAGTT------GAAC---TA---TAATAC-AAAATACGAgt
gi|11 : tATACTGAGATC------CAAAA-------GTTAAGTCGGTACTTTCATGCAAATT------TAAC---TA---TAATAC-AAAATAAGATATCata
gi|12 : ATACTGAGATC------CAAAA-------GCTAAATTAGTACTTTCATGCAAGTT------GAAC---TA---TAATAC-AAAATAAGAATT
gi|13 : tATACTGAGTTC------CAAAATT-----GTTTAG---GTATTTTCATGCAAGTT------TAAC---TT---TAATAC-AAAAAAAGATTTC
gi|14 : ATACTGTGTTC------CGAAA-------GTTGTGTCGCTATTTTCATGCAAGTT------TAAC---TA---TAATAC-AAAAAAAAATTg
gi|15 : atATGCTGAGTTC------CAAAA-------GTTTAAACGGTATTTTCATGCACGAT------TAAC---TA---TAATAC-AAAAAAAGATTT
gi|16 : ATACTGAGTTC------CAAAA-------GTTCAGTCAGTATTTTCATGCAAGTT------TAAC---TA---TAATAT-AAAATAAGATTTCt
gi|17 : ATACTGAGTTC------CAAAA-------TTTT-GTCGGTATTTTCATGCAAGTT------TAAC---TA---TAATACAAAAATAA-ATTT
gi|18 : tATACTGAAAAC------AAAAA-------GTTTAGTCACCCCTTTCATGTAAGTT------TAAC---TA---TAATAC-AAAATAAGATTTg
gi|19 : AAAA-------CTTTAGTCACCAATTTCATACAAGTC------AAAC---TG---TAATAC-AAAATCAGAT
gi|2 : tgtgctcacaaatATACTGAGTTC------CAAAATCCAAATGTTTTGTCAGTA-TTTCATGCAAGTT------TAAC---TA---TAATAC-AAAAAAAGATTTC
gi|20 : catCTGAGATC------CAAAA-------GTTTAGTCGGTACTTTCATGCAAGTT------AATC---TA---TAATGC-AAAATAAGATTTCg
gi|21 : ATACTGAGTTC------CAAAA-------GTTTTGTTGGTATTTTCATGCAAGTT------TAAC---TA---TAATAC-AAAAAAAGATg
gi|22 : tTC------CAAAA-------GTTTAGTCGGTACTTCTATGCAAGTT------TAAC---TA---CAATAC-AGAATAAGATTTC
gi|23 : ttataATACTGAGTTC------CAAAA-------GTTAAGTTGATATTTTCATGCAAGTT------TAAC---TT---TATTAC-AAAA-AAGATTg
gi|24 : TACTGAGATC------TAAAA-------GTTTCGTCGGTATTCTCGTTTAAGTT------TAAC---TA---CAATAC-AA---AAGATTT
gi|25 : gATACTGAGTTC------CAAAA-------GTTTAGTCGGTA-TTTCATGCATGTT------TAAC---TATACTAGTAT-AAAAAAAt
gi|26 : tACTGAGTTC------CAATA-------GTTTTGTTGTTTTTTTCATGCATTTT------TAAC---TA---TAA-AA-AAAA-AATATTTC
gi|27 : ------CAAGAC------GTTTAGTCATCATTTTCATGCAAGTA------TGAC---TA---TATTAC-CAAATAAg
gi|28 : atactcaaagTGAGATC------CAAAA-------ATT-AATCGGTTCTATCCTGCAAGTT------TAAC---TT---TAATAT-AAAATAAGATTTCta
gi|29 : AAAA-------GTTTAGTCATTACTTTCAAGCAGGTA------TAAC---AT---TAATAC-AAAATAAAATTTg
gi|3 : tcaaaaggATACTGAGATCGTGGGCCAAAC-------GTTTAGTCGGTACGTTCATGCAAATT------TAACTATTA---TAATAT-AAAATAAGATTTC
gi|30 : -------GTTTAGTCACCACTTTCATGAAAGTA------AAAT---GA---TAATAC-AAAATAA-ATTTg
gi|31 : tcaaaagaaattAAAA-------GTTTAGTCAGTATTTTCATGCAAGTA------TAAG---CA---TGATAA-AAAt
gi|32 : tatatacttagaagaAAAA-------GTTTAGTCACCAATTTCATGCAAGTG------TAAC---TA---TGATAC-AAAATg
gi|33 : tatactcaaaagaAAAA-------ATTTAGTCACAAGTTTCATGCAGGTA------TAAC---TA---TAATAC-AAAA
gi|34 : attcttaaaagaAAAA-------GTTTAGTCACCATTTTCCTGCAAGCA------TAAC---TA---AAATAC----ACAAGATTTaa
gi|35 : aaaaaga------CAAAT-------GTTTAGTCGCCACATTCATGCAAGTA------TAAC---AA---TAACGC-CAAATA
gi|36 : actcgaaagAAAA-------GTTTAGTCACCATTTTCCTGCAATCA------TAAC---TA---AAATAC-
gi|37 : atacccaaaaagaAAAA-------GTTTAGTCAGTATTTTCATGCAATTA------TAAT---TA---TAATTT-GAAATAAGATTTCc
gi|38 : -------GTTTTGTCAGTATTGTCATGCACGTA------TAAC---TA---TTATAC-AAAATTAGATTTa
gi|39 : atTTTAGTCGCCACCTTCATGCAAGTA------TAAC---TA---CAATAC-AAAATATGATTTt
gi|40 : ACTTTCATGCAAGTA------TAAC---TA---CAACAC-AAAATAAGATTT
gi|41 : ACACTGAGTTC------CAAA--------GTTTTCTCGGTATTTCCATGCAag
gi|6 : atATACCGAGTTC------CAAAA-------GTTTAGTCGATACTTTCATGCAAGTT------GAAC---TA---TAATAC-GATATATGATTTC
gi|7 : gtTACTGAGTTC------CAAAA-------GTTTTGTCTCTATTTTCATGCAAGTT------TACT---TA---TAATAC-AAAAAAAGATTTCa
gi|8 : attATACTGAGATC------CAAAA-------TTTTAGTCGGTACTTTCATGCACGTT------TAAC---TA---TAATAC-ATAATAACATTTCg
gi|9 : taATGCTGAGTTC------CAAAA-------GTTTAAACGGTATTTTCATGCACGAT------TAAC---TA---TAATAC-AAAAAAAGATTTg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TTCAAAATAAAATGTTTAGTCCCCACTTTCAAGCAAGCACAAAATGATACAAATTAATATTCGATGTTTTATTA
Unaligned ( gi|5 ): CTAAATATACTCAAAAGAAGAAGTCTAGCCACCCTCTTCATTTAGGTATAACAATAATGCAAAACAATATATC
Alignments
lowQualScore : 1 444444 6666666 1 1 3333333 111 111 2 0
lowQualScore : . ...... ....... . . ....... ... ... . .
lowQualScore : 2 444444 1111111 4 9 3333333 888 888 1 9
consensus : ATACTGAGTTC------CAAAA-------GTTTAGTCGGTACTTTCATGCAAGTT------TAAC---TA---TAATAC-AAAATAAGATTTC
Reference ( family-5473 ) : ATACTGAGTTC------CAAAA-------GTTTAGTCGGTACTTTCATGCAAGTT------TAAC---TA---TAATAC-AAAATAAGATTTC
gi|1 : AAAA-------GTTTGGTCACTACTGTCATGACAGTTCCGGTATAAC---TA---GAATACAAAAATAAGAT
gi|10 : ttgtatactcaaaataATACTGAGATC------CAAAA-------GTTAAGTCGCTGCTTTCATGCAAGTT------GAAC---TA---TAATAC-AAAATACGAgt
gi|11 : tATACTGAGATC------CAAAA-------GTTAAGTCGGTACTTTCATGCAAATT------TAAC---TA---TAATAC-AAAATAAGATATCata
gi|12 : ATACTGAGATC------CAAAA-------GCTAAATTAGTACTTTCATGCAAGTT------GAAC---TA---TAATAC-AAAATAAGAATT
gi|13 : tATACTGAGTTC------CAAAATT-----GTTTAG---GTATTTTCATGCAAGTT------TAAC---TT---TAATAC-AAAAAAAGATTTC
gi|14 : ATACTGTGTTC------CGAAA-------GTTGTGTCGCTATTTTCATGCAAGTT------TAAC---TA---TAATAC-AAAAAAAAATTg
gi|15 : atATGCTGAGTTC------CAAAA-------GTTTAAACGGTATTTTCATGCACGAT------TAAC---TA---TAATAC-AAAAAAAGATTT
gi|16 : ATACTGAGTTC------CAAAA-------GTTCAGTCAGTATTTTCATGCAAGTT------TAAC---TA---TAATAT-AAAATAAGATTTCt
gi|17 : ATACTGAGTTC------CAAAA-------TTTT-GTCGGTATTTTCATGCAAGTT------TAAC---TA---TAATACAAAAATAA-ATTT
gi|18 : tATACTGAAAAC------AAAAA-------GTTTAGTCACCCCTTTCATGTAAGTT------TAAC---TA---TAATAC-AAAATAAGATTTg
gi|19 : AAAA-------CTTTAGTCACCAATTTCATACAAGTC------AAAC---TG---TAATAC-AAAATCAGAT
gi|2 : tgtgctcacaaatATACTGAGTTC------CAAAATCCAAATGTTTTGTCAGTA-TTTCATGCAAGTT------TAAC---TA---TAATAC-AAAAAAAGATTTC
gi|20 : catCTGAGATC------CAAAA-------GTTTAGTCGGTACTTTCATGCAAGTT------AATC---TA---TAATGC-AAAATAAGATTTCg
gi|21 : ATACTGAGTTC------CAAAA-------GTTTTGTTGGTATTTTCATGCAAGTT------TAAC---TA---TAATAC-AAAAAAAGATg
gi|22 : tTC------CAAAA-------GTTTAGTCGGTACTTCTATGCAAGTT------TAAC---TA---CAATAC-AGAATAAGATTTC
gi|23 : ttataATACTGAGTTC------CAAAA-------GTTAAGTTGATATTTTCATGCAAGTT------TAAC---TT---TATTAC-AAAA-AAGATTg
gi|24 : TACTGAGATC------TAAAA-------GTTTCGTCGGTATTCTCGTTTAAGTT------TAAC---TA---CAATAC-AA---AAGATTT
gi|25 : gATACTGAGTTC------CAAAA-------GTTTAGTCGGTA-TTTCATGCATGTT------TAAC---TATACTAGTAT-AAAAAAAt
gi|26 : tACTGAGTTC------CAATA-------GTTTTGTTGTTTTTTTCATGCATTTT------TAAC---TA---TAA-AA-AAAA-AATATTTC
gi|27 : ------CAAGAC------GTTTAGTCATCATTTTCATGCAAGTA------TGAC---TA---TATTAC-CAAATAAg
gi|28 : atactcaaagTGAGATC------CAAAA-------ATT-AATCGGTTCTATCCTGCAAGTT------TAAC---TT---TAATAT-AAAATAAGATTTCta
gi|29 : AAAA-------GTTTAGTCATTACTTTCAAGCAGGTA------TAAC---AT---TAATAC-AAAATAAAATTTg
gi|3 : tcaaaaggATACTGAGATCGTGGGCCAAAC-------GTTTAGTCGGTACGTTCATGCAAATT------TAACTATTA---TAATAT-AAAATAAGATTTC
gi|30 : -------GTTTAGTCACCACTTTCATGAAAGTA------AAAT---GA---TAATAC-AAAATAA-ATTTg
gi|31 : tcaaaagaaattAAAA-------GTTTAGTCAGTATTTTCATGCAAGTA------TAAG---CA---TGATAA-AAAt
gi|32 : tatatacttagaagaAAAA-------GTTTAGTCACCAATTTCATGCAAGTG------TAAC---TA---TGATAC-AAAATg
gi|33 : tatactcaaaagaAAAA-------ATTTAGTCACAAGTTTCATGCAGGTA------TAAC---TA---TAATAC-AAAA
gi|34 : attcttaaaagaAAAA-------GTTTAGTCACCATTTTCCTGCAAGCA------TAAC---TA---AAATAC----ACAAGATTTaa
gi|35 : aaaaaga------CAAAT-------GTTTAGTCGCCACATTCATGCAAGTA------TAAC---AA---TAACGC-CAAATA
gi|36 : actcgaaagAAAA-------GTTTAGTCACCATTTTCCTGCAATCA------TAAC---TA---AAATAC-
gi|37 : atacccaaaaagaAAAA-------GTTTAGTCAGTATTTTCATGCAATTA------TAAT---TA---TAATTT-GAAATAAGATTTCc
gi|38 : -------GTTTTGTCAGTATTGTCATGCACGTA------TAAC---TA---TTATAC-AAAATTAGATTTa
gi|39 : atTTTAGTCGCCACCTTCATGCAAGTA------TAAC---TA---CAATAC-AAAATATGATTTt
gi|40 : ACTTTCATGCAAGTA------TAAC---TA---CAACAC-AAAATAAGATTT
gi|41 : ACACTGAGTTC------CAAA--------GTTTTCTCGGTATTTCCATGCAag
gi|6 : atATACCGAGTTC------CAAAA-------GTTTAGTCGATACTTTCATGCAAGTT------GAAC---TA---TAATAC-GATATATGATTTC
gi|7 : gtTACTGAGTTC------CAAAA-------GTTTTGTCTCTATTTTCATGCAAGTT------TACT---TA---TAATAC-AAAAAAAGATTTCa
gi|8 : attATACTGAGATC------CAAAA-------TTTTAGTCGGTACTTTCATGCACGTT------TAAC---TA---TAATAC-ATAATAACATTTCg
gi|9 : taATGCTGAGTTC------CAAAA-------GTTTAAACGGTATTTTCATGCACGAT------TAAC---TA---TAATAC-AAAAAAAGATTTg
blockSeqs : A GTGGGC TCCAAAT C C T TAT TAC A
blockSeqs : A . TT G C T . . .
blockSeqs : T . C G C T . . .
blockSeqs : T . . G T T . . .
blockSeqs : T . . C T T . . .
blockSeqs : T . . G T T . . .
blockSeqs : T . . G T T . . .
blockSeqs : A . . G T T . . .
blockSeqs : T . . C C T . . .
blockSeqs : A . . C A C . . .
blockSeqs : T . . G C T . . .
blockSeqs : T . . G T T . . .
blockSeqs : A . . G C T . . .
blockSeqs : T . . G T T . . .
blockSeqs : T . . A T T . . .
blockSeqs : A . . G T T . . .
blockSeqs : A . . G T T . . .
blockSeqs : T . . T C T . . .
blockSeqs : T . . T C A . . .
blockSeqs : T . . G C T . . .
blockSeqs : A . . T C A . . .
blockSeqs : T . . G T T . . .
blockSeqs : . . C A A . . .
blockSeqs : . . G G A . . .
blockSeqs : . . C T G . . .
blockSeqs : . C C A . . .
blockSeqs : . C T A . . .
blockSeqs : . C T A . . .
blockSeqs : . C T A . . .
blockSeqs : . G C A . . .
blockSeqs : . G C A . . .
blockSeqs : . C T A . . .
blockSeqs : . G C A . . .
blockSeqs : . A T T . . .
blockSeqs : . C C T . . .
blockSeqs : . G T T . . .
blockSeqs : G . T . . .
blockSeqs : .
blockSeqCons : T******
originalCons : ATACTGAGTTC------CAAAA-------GTTTAGTCGGTACTTTCATGCAAGTT------TAAC---TA---TAATAC-AAAATAAGATTTC
finalCons : ATACTGAGTTC------CAAAA-------GTTTAGTCGGTACTTTCATGCAAGTT------TAAC---TA---TAATAC-AAAATAAGATTTC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TTCAAAATAAAATGTTTAGTCCCCACTTTCAAGCAAGCACAAAATGATACAAATTAATATTCGATGTTTTATTA
Unaligned ( gi|5 ): CTAAATATACTCAAAAGAAGAAGTCTAGCCACCCTCTTCATTTAGGTATAACAATAATGCAAAACAATATATC
Alignments
lowQualScore : 1 444444 6666666 1 1 3333333 111 111 2 0
lowQualScore : . ...... ....... . . ....... ... ... . .
lowQualScore : 2 444444 1111111 4 9 3333333 888 888 1 9
consensus : ATACTGAGTTC------CAAAA-------GTTTAGTCGGTACTTTCATGCAAGTT------TAAC---TA---TAATAC-AAAATAAGATTTC
Reference ( family-5473 ) : ATACTGAGTTC------CAAAA-------GTTTAGTCGGTACTTTCATGCAAGTT------TAAC---TA---TAATAC-AAAATAAGATTTC
gi|1 : AAAA-------GTTTGGTCACTACTGTCATGACAGTTCCGGTATAAC---TA---GAATACAAAAATAAGAT
gi|10 : ttgtatactcaaaataATACTGAGATC------CAAAA-------GTTAAGTCGCTGCTTTCATGCAAGTT------GAAC---TA---TAATAC-AAAATACGAgt
gi|11 : tATACTGAGATC------CAAAA-------GTTAAGTCGGTACTTTCATGCAAATT------TAAC---TA---TAATAC-AAAATAAGATATCata
gi|12 : ATACTGAGATC------CAAAA-------GCTAAATTAGTACTTTCATGCAAGTT------GAAC---TA---TAATAC-AAAATAAGAATT
gi|13 : tATACTGAGTTC------CAAAATT-----GTTTAG---GTATTTTCATGCAAGTT------TAAC---TT---TAATAC-AAAAAAAGATTTC
gi|14 : ATACTGTGTTC------CGAAA-------GTTGTGTCGCTATTTTCATGCAAGTT------TAAC---TA---TAATAC-AAAAAAAAATTg
gi|15 : atATGCTGAGTTC------CAAAA-------GTTTAAACGGTATTTTCATGCACGAT------TAAC---TA---TAATAC-AAAAAAAGATTT
gi|16 : ATACTGAGTTC------CAAAA-------GTTCAGTCAGTATTTTCATGCAAGTT------TAAC---TA---TAATAT-AAAATAAGATTTCt
gi|17 : ATACTGAGTTC------CAAAA-------TTTT-GTCGGTATTTTCATGCAAGTT------TAAC---TA---TAATACAAAAATAA-ATTT
gi|18 : tATACTGAAAAC------AAAAA-------GTTTAGTCACCCCTTTCATGTAAGTT------TAAC---TA---TAATAC-AAAATAAGATTTg
gi|19 : AAAA-------CTTTAGTCACCAATTTCATACAAGTC------AAAC---TG---TAATAC-AAAATCAGAT
gi|2 : tgtgctcacaaatATACTGAGTTC------CAAAATCCAAATGTTTTGTCAGTA-TTTCATGCAAGTT------TAAC---TA---TAATAC-AAAAAAAGATTTC
gi|20 : catCTGAGATC------CAAAA-------GTTTAGTCGGTACTTTCATGCAAGTT------AATC---TA---TAATGC-AAAATAAGATTTCg
gi|21 : ATACTGAGTTC------CAAAA-------GTTTTGTTGGTATTTTCATGCAAGTT------TAAC---TA---TAATAC-AAAAAAAGATg
gi|22 : tTC------CAAAA-------GTTTAGTCGGTACTTCTATGCAAGTT------TAAC---TA---CAATAC-AGAATAAGATTTC
gi|23 : ttataATACTGAGTTC------CAAAA-------GTTAAGTTGATATTTTCATGCAAGTT------TAAC---TT---TATTAC-AAAA-AAGATTg
gi|24 : TACTGAGATC------TAAAA-------GTTTCGTCGGTATTCTCGTTTAAGTT------TAAC---TA---CAATAC-AA---AAGATTT
gi|25 : gATACTGAGTTC------CAAAA-------GTTTAGTCGGTA-TTTCATGCATGTT------TAAC---TATACTAGTAT-AAAAAAAt
gi|26 : tACTGAGTTC------CAATA-------GTTTTGTTGTTTTTTTCATGCATTTT------TAAC---TA---TAA-AA-AAAA-AATATTTC
gi|27 : ------CAAGAC------GTTTAGTCATCATTTTCATGCAAGTA------TGAC---TA---TATTAC-CAAATAAg
gi|28 : atactcaaagTGAGATC------CAAAA-------ATT-AATCGGTTCTATCCTGCAAGTT------TAAC---TT---TAATAT-AAAATAAGATTTCta
gi|29 : AAAA-------GTTTAGTCATTACTTTCAAGCAGGTA------TAAC---AT---TAATAC-AAAATAAAATTTg
gi|3 : tcaaaaggATACTGAGATCGTGGGCCAAAC-------GTTTAGTCGGTACGTTCATGCAAATT------TAACTATTA---TAATAT-AAAATAAGATTTC
gi|30 : -------GTTTAGTCACCACTTTCATGAAAGTA------AAAT---GA---TAATAC-AAAATAA-ATTTg
gi|31 : tcaaaagaaattAAAA-------GTTTAGTCAGTATTTTCATGCAAGTA------TAAG---CA---TGATAA-AAAt
gi|32 : tatatacttagaagaAAAA-------GTTTAGTCACCAATTTCATGCAAGTG------TAAC---TA---TGATAC-AAAATg
gi|33 : tatactcaaaagaAAAA-------ATTTAGTCACAAGTTTCATGCAGGTA------TAAC---TA---TAATAC-AAAA
gi|34 : attcttaaaagaAAAA-------GTTTAGTCACCATTTTCCTGCAAGCA------TAAC---TA---AAATAC----ACAAGATTTaa
gi|35 : aaaaaga------CAAAT-------GTTTAGTCGCCACATTCATGCAAGTA------TAAC---AA---TAACGC-CAAATA
gi|36 : actcgaaagAAAA-------GTTTAGTCACCATTTTCCTGCAATCA------TAAC---TA---AAATAC-
gi|37 : atacccaaaaagaAAAA-------GTTTAGTCAGTATTTTCATGCAATTA------TAAT---TA---TAATTT-GAAATAAGATTTCc
gi|38 : -------GTTTTGTCAGTATTGTCATGCACGTA------TAAC---TA---TTATAC-AAAATTAGATTTa
gi|39 : atTTTAGTCGCCACCTTCATGCAAGTA------TAAC---TA---CAATAC-AAAATATGATTTt
gi|40 : ACTTTCATGCAAGTA------TAAC---TA---CAACAC-AAAATAAGATTT
gi|41 : ACACTGAGTTC------CAAA--------GTTTTCTCGGTATTTCCATGCAag
gi|6 : atATACCGAGTTC------CAAAA-------GTTTAGTCGATACTTTCATGCAAGTT------GAAC---TA---TAATAC-GATATATGATTTC
gi|7 : gtTACTGAGTTC------CAAAA-------GTTTTGTCTCTATTTTCATGCAAGTT------TACT---TA---TAATAC-AAAAAAAGATTTCa
gi|8 : attATACTGAGATC------CAAAA-------TTTTAGTCGGTACTTTCATGCACGTT------TAAC---TA---TAATAC-ATAATAACATTTCg
gi|9 : taATGCTGAGTTC------CAAAA-------GTTTAAACGGTATTTTCATGCACGAT------TAAC---TA---TAATAC-AAAAAAAGATTTg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TTCAAAATAAAATGTTTAGTCCCCACTTTCAAGCAAGCACAAAATGATACAAATTAATATTCGATGTTTTATTA
Unaligned ( gi|5 ): CTAAATATACTCAAAAGAAGAAGTCTAGCCACCCTCTTCATTTAGGTATAACAATAATGCAAAACAATATATC