lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 11111 222 11 1 111111111 111111 1111111 77777777777777777777 777777777 111 999999999999999999999999999999 11 66666 22222222222222222222222222222222222222222222222222222222222 1 11 1 22
lowQualScore : 3 99999 1 3 222222 3 99999 6666 4 4 4 333 2 5 7 00 3 2 444444444 55 444 4 000000 55 1111111 55555555555555555555 2 2 0 888888888 1 88 222 000000000000000000000000000000 1 0 0 7 5 22 3 22222 00000000000000000000000000000000000000000000000000000000000 9 5 1 00 0 33 8 6 2
lowQualScore : . ..... . . ...... . ..... .... . . . ... . . . .. . . ......... .. ... . ...... .. ....... .................... . . . ......... . .. ... .............................. . . . . . .. . ..... ........................................................... . . . .. . .. . . .
lowQualScore : 3 99999 0 3 999999 1 22222 1111 4 1 3 555 5 2 5 88 3 8 555555555 55 111 0 999999 55 2222222 99999999999999999999 2 6 1 111111111 0 55 333 444444444444444444444444444444 4 1 4 5 3 00 2 77777 44444444444444444444444444444444444444444444444444444444444 7 0 0 22 0 22 0 0 0
consensus : TTCTTCT-TCC----GTATA-A----GGTACTTC-ACCACTA---TAAGTG----TATACTCGTACCGGCATGTGTAGTGCAAAGACGACTGTGTATTTATAAATGAATNTTCTAAAAGAATTTT-GTACAGTGCAGTTAAAA---------GTTT--AAAAACCAA-TCCG--C--TTGAC--TATGGTCTGATCGGGAT-----GGA-CTGGA---T-CC---G---CTTGAAACTGTCTATGGNTGGAGCAGTGACAGCTAC--C---TAATGGTAAAGCGTTCCATATCCTGATACCA-TCTGG-AA-A--G-------A-------TTTC---TGGTAAACGAGTGTCCTCGCATACGGCACCAAGAAAGTGTTG-T--TTGCCTCTT--GGA-------GATATGGTC------------------GG------------------AATATCGATCAACTGATACACAACCCT-GAACATCATGATG-ACTTTGG-CCTGGGCTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTT
Reference ( gi|2 ) : TTCTTCT-TCC----ATATA-A----GATACTTC-ACCACTA---GAAGTG----TATACTCGTACCGGCATGTGTAGTACAAAGATGACTGTGTATTTACACATGAATGTTCTAGAAGAATCTT-GTACAGTGCATTTAAAA---------GTTT--AAAAACCAA-TCTG--C--CTGAC--TATGGTCTGATCGGGGT-----GGA-CT------T-TT---G---CTTGAAACTGTCTATGGTTGGAGCAGTGACAGCTACTTCCGGTAGTGGTAAAGTGTTCCATATCCTGATACTG-TCTGG-------G-------A-------TGTT---TGGTAAACGAGTGTCCCCGCATACAGCATTAAGAAAGTGTT--T--TTGCCTCTT--G---------GATATGGTC------------------GG------------------AATATCAATTAACGGATATACAACCCT-GAACATCATGATG-ACAGTGG-CCTGGGCTCTGCGCTTCTGGAGTTTTGGCCATTGGAGTT
gi|7 : TTCTTCT-TCC----GTATG-A----GGTACTTC-ACCACTA---TAAGTG----TATACTCGTACCGGCATGTGTAGTACAAAGACGACTGTGTATTTACACATGAATGTTCTAAAAGAATTTT-GTACAGCTC-----------------GTTT--AAAAACCAA-TCCG--C--TTGAC--TACGGTCTGATCTGAAT-----GGA-CTGGA---T-CTGTAG---CTTGAAACTGTCTATGGTTGGAGCAGTGACAG--AGCTCTACTACTGGTAAA--GTTCCATATCCTTATCCCGTTTTGGAAAAAT-G-------A-------TTTC---TGGCAAATGTGTGTCCTCACATATGGCACCAAGAAAGTGTT--G--TT
gi|13 : TTCTTCT-TCC----ATATA-A----TGTGCCTC-ACCACTA---TAAGTGCCTGTATACTTGTACAGGCATGTGTAATGCAAAGACGACTGT--ATTTATAAATGAATATTCTAAAAGAACTTT-GTAAAGTGCAGTTAAAG---------GTTT---AAAACAAG-TCTG--A--TGGACTATATGGTTTGATCGGAAT-----GAA-CT------at
gi|12 : tcTTCTTTTATCC----GTATA-ATTAAGGTACTTC-ACCACTA---TGAGTG----TATACTCCTACCGGCATGTGAAGTGCAAAG-------TTTATT---A-ATGAATGTTCTAAAAAAAAATT-GTACTGTACAGTTAAAA---------TTAA--AAAAAACAA-TCCG--C--TTGAC--TATGGTCTGATCGGGTTCGAACGGATCT------G-TA---G---CTTAAAACTGgga
gi|18 : TTCCTCT-TCC----ATGTA-A----GGTACTTC-ACCACTA-----AGTG----TATACTCGTACCGCCATGTGTAGTGCAAAGACGACTGTGTATTTATTAATGGATGTTCTAAAATAATTTA-ATACAGTGAAGTTAGAA---------GTT
gi|17 : tTTCTTCT-TCT----GTATA-A----GGTACTTC-ACCATAA---TGAGTG----TATACTCATACTGGCATGTGTGGTGCAAAGACGACTGTGCATTTA-------------TAACAGAAT-TT-GTACAGTGCAGTTAAAA---------GTTT--AAAAACAAA-TCTG--a
gi|20 : tTTCTTTT-TCC----GTTAA-A----GGTACTTC-ACCACTA---CAAGTG----TGTACTCGTACCGGCATATGTATTGCAAAGAtttaagagttgctgaagactgg
gi|19 : TTTTTCT-TCC----ATGTA-A----TGTACTTC-ACCACTA---TAAGTG----TATACTCATACCGGCGTG
gi|3 : aatattttcttcttttTCTTCT-TCCTTTTATAT---------TACTTC-ACCACTA---G--GTG----TATACTCCTACCGGCAT-----------AGACTCGTGTGTATTTATTAATGAATTTTCTAAAAGAGTTTTTGTACAGTGCAGTTAAAA---------GTTT--AATA--TAA-TATGTAC--TTGAC--TATGGTCTGATTGAGAT-----GAA-CCGAA---T-CT---GTCACTTAAAACCATCTGTGGTTGGAGCAGTTACAGCTAC------TAATAGTAAAACATTCCATATCCTGATACCG-TATGGAAAGAACG-------A-------TTTC---TGGTAAACAAATGTCCTCCTATACAGCACCA-------GTT--A--TTGCCTCTT--GGA-------GATCTGGTCGACACCAGGAGAGTGAATGG------------------AATGCCAATCAACTGATACACAACCCT-TAACATCATAATG-ACTTTGG-CCTGGGCTGTGaatgatattg
gi|9 : TCTTCT-TCC----TTATATA----GGTACTGG-GGAACTT---TAAGTG----TATACTCGTACCGGCATGTGTAGTACAAAGACAACTGT--ATTTACACATGAATGTTCTAAAAGAATTTT-GAACAGTGCATTTAAAA---------GTTTAAAAAAAACAA-TCCA--C--TTGGC--TATGGTCTGATCGAAAT-----GGA-CTGGA---T-CT---GTACCTTGAAACTGTCAATGGTTTGAGCAGTGGCAGCTAC------AACTGGTAAAGCGTTCCATATCCTGATACCA-TCTGGGAAAAACG-------A-------TTTC---TGAT-AATGAGTGTCC
gi|4 : TCGTCA-TCC----GCATA-A----GGTACTTC-ACAACTG---TAAGTG----TATACTCGTACCGACATGTGTAGTGTAAAGACGGTTGTGTATTTATAAATGAATCTTTTAAAACAAGTGT-GTATAGTGCAGTTGAAA---------G-TT--AAAAACACG-TCCG--C--TTGAC--TATAGTCTGATCGGGAT-----GGA-C--------------------TGGA----TC--TGGTTGGGGCAATGACAGC----TCC--TAAC-GTAAAGCGTTCCATATCCTGATAACA-TCAGA-------GAAA----A-------TGTTTTCTGGTAAACGAATGTCCTCGCATACGGCACCAAGAAAGTGTTG-TTGTTGCCTCTT--GGAGATC---GATATGGTC------------------GG------------------t
gi|15 : CTTCT-TTC----GTGTA-A----GGTACTTC-ACCACTA---ATTGTG----TAAACTCACACCATCATATGCAGTGCAAAAATGACTGTATA---A-ACAT---TATT---------------TACACTACAGTTAAAA---------GTTA--AAAATCCTG-TGCG--T--TTGAC--TAGGGTTTGATTGGGAT-----GGA-----------TT---G---CCTGcaccagatgatcggacggaatacctatcaactgatata
gi|14 : CTTTT-TCC----TT-TA-A----TCTAATTCCACCACTATATAAATTG----TCTACTAATACCGACATGTGTAATGCAAAAACAAC--TGTATTTA---ATCAATTTTCT--AAGAAGTTT-Gtcac
gi|21 : cctga-ACCACTT---TATGTG----TATACCCGTACCGGCATGTGTAGaaaacctgaaaaaatgaacaagaaatacttggtttggatctgtcacttgaaaccaacta
gi|22 : AAGTG----TATACTCGTAACGGCATGTGTAGTGCAA
gi|10 : tTGTGTAGTGAATAGATGACTGTATA---A-ACA--AATTTTCTAAAATGATTTT--TACAGTACAGTTAAAA---------GTTT--AAAA-CCAAGTGTG--C--ATGAC--T---GTC----------------------------------A---CTTGAAACTGTCCACGGATGGAGCAGTGACAGCTAC------TAATGGTAATGCGTTCCAAATCCTGATACGA-TCTAG-------GAAAAACAA-------TTTA---TGGTAAACAAGTGACATTACATATTGCACCAAAAAAGTGTTG-TTATTGCTTCCT--GGA-------GATATGGTC------------------AG------------------
gi|16 : aagctataccaattctTATAAATTAATTTTCTAAAAGT-TTTT-GTACAGTGAAGTTAAAATAATACAGTGCAT--ATAAAATAA-TGTG--CACTTGAC--TGTGGTCTGATCATGAT-----AGA-CTGGTTC-TGTC---G---CTTGAAACTGTCTATGGATTGAGCAGTAACAGCTACTcaccacaagatt
gi|1 : ctg--CTAAC--TTGGGTCTGATGGAGAT-----AGA-CTGGATCTT-TC---A---CTTGAAATTATCTATTTATGGAGATGTGATAGCTaat
gi|6 : ataagttaaaatactgtacatGTATATGACTATAGCAGTGGCAGTTACTGC------TGGTAAGGCGTTCCATATTCTGATAACA-AATGG-------G-------AAAAACGATTTC---TGGTAAGCAAGTGTCCACGCATACGGTACCAAGAAAGTGTTGTTA-TTGCCTCTTTGA---------GATATGGTC------------------GGCACCAGATGATTGGACGGAATATCGATAAACTGATATACAACCCT-GAAAATCATGATG-GCTTTGG-CCTGGGCTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTTtcgattctatctgggaggtcttcagttcttgcatacgacaccaagaagtgttgttattacctcttggcaccaggagattggatggattatcattcaactgatacaaaactctaaaacaccatggcgcacaataaattgattatttatgtgttaatttatgttcattttgaacatcatgatgactttgttcctgggctttacgttcctggaatgttggcctctggagttgatccaatatgttgaagtcactgctggttgtcctgcagtctgggaataccgtgggagcagctctccgttgagccatctccaacttgtttatgaatgttttct
gi|1 : GATTCTA-TCTGG-------G-------A-------GGTC---T--TCA------GTTCTTGCATACGACACCAAGAA-GTGTTGTTA-TTACCTCTT--GGCACCAGGAGAT-TGGAT------------------GG------------------ATTATCATTCAACTGATACAAAACTCTAAAACACCATGGCGCACAATgatccattatgttggatacactgctggttgtccggtagtaagataacaccatctgagcaaccctccgttgaaccatctccatt
gi|1 : ataagttaaaatactgtacatctaacttgggtctgatggagatagactggatctttcacttgaaattatctatttatggagatgtgatagcttcT-GAACATCATGATG-ACTTTGTTCCTGGGCTTTACGTTCCTGGAATGTTGGCCTCTGGAGTTaaattgattatttatgtgttaatttatgttcattttgaacatcatgatgactttgttcctgggctttacgttcctggaatgttggcctctggagttgatccaatatgttgaagtcactgctggttgtcctgcagtctgggaataccgtgggagcagctctccgttgagccatctccaacttgtttatgaatgttttct
gi|5 : ataagttaaaatactgtacatctaacttgggtctgatggagatagactggatctttcacttgaaattatctatttatggagatgtgatagcttcgattctatctgggaggtcttcagttcttgcatacgacaccaagaagtgttgttattacctcttggcaccaggagattggatggattatcattcaactgatacaaaactctaaaacaccatggcgcacaataaattgattatttatgtgttaatttatgttcatttTGG-CCTGGGCTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTTgatccaatatgttgaagtcactgctggttgtcctgcagtctgggaataccgtgggagcagctctccgttgagccatctccaacttgtttatgaatgttttct
gi|8 : tTGG-CCTGGATTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTTgatccattatgttggatacactgctggttgtccggtagtaagataacaccatctgagcaaccctccgttgaaccatctccatttgccgtgcacgggttccagataacgctagcacattctgtgagtgccctgataaaggtttcgtagcatatagggctttgatcttacgtgaacactggtggatattgcgccgcaggaaatcaaggatggagtttgccttcttcgtcacgtgtttgatgtggtggttccagttccggctcctatggatatttacccccaagatacttggctgagtctgctgcatcta
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): CGGATTACGCTAGCATATTCTGTGAGTGGTCTGATTAAGGGTTTATAGCATAGAACTGTGGTTTCGGGGTGTCACTAGTAAATGTTGCGCCGCAGATAGGCAAGGGTGAAATTAGACTTCTTCGGCATCTGTTTGTTGTGATGATTCCATTTCAGATTGCTATGGTTGTTAACCCCTAAATACTTGGCTGAGTCTGCTGCATCTA
Alignments
lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 11 111111111 44444444444 33333333 5555 22 333333333333 4444444444444444444444444444444444444
lowQualScore : 3 0 2 3 6666 2 1 444 5555 11 0 2 1 3 222222222 666 1 0 0 77777 55 3 77777777777 1 9999 33333333 55 1 5 5 5 2 6666 0 1 33 77 000000000000 3 0000000000000000000000000000000000000 4 8 6
lowQualScore : . . . . .... . . ... .... .. . . . . ......... ... . . . ..... .. . ........... . .... ........ .. . . . . . .... . . .. .. ............ . ..................................... . . .
lowQualScore : 1 7 2 1 5555 9 9 777 7777 00 7 1 6 1 333333333 222 3 2 4 33333 00 6 44444444444 0 4444 77777777 11 4 0 0 0 8 2222 1 4 66 99 888888888888 2 2222222222222222222222222222222222222 6 0 7
consensus : TTCTTCT-TCCGTATA-A----GGTACTTC-ACCACTATA---AGTG----TATACTCGTACCGGCATGTGTAGTGCAAAGACGACTGTGTATTTATAAATGAATNTTCTAAAAGAATTTT-GTACAGTGCAGTTAAAA---------GTTT--AAAAACCAATCCG--C--TTGAC--TATGGTCTG-ATCGGGATGGACTGGATC---C---G---CTTGAAACTGTCTATGGTTGGAGCAGTGACAG----CTACC-----TAA-TGGTAAAGCGTTCCATATCCTGATACCG-TCT-G-GGAAAA-CGATTTCTGGTAAACGAGTGTCCTCGCATACGGCACCAAGAAAGTGTTGTT-T--TGCCTCTTGG-------A----GATATGGT------------------C------------------GGAATATCAATCAACTGATATACAACCCT-GAACATCATGATGACTTTGG-CCTGGGCTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTT
Reference ( family-534 ) : TTCTTCT-TCCGTATA-A----GGTACTTC-ACCACTATA---AGTG----TATACTCGTACCGGCATGTGTAGTGCAAAGACGACTGTGTATTTATAAATGAATNTTCTAAAAGAATTTT-GTACAGTGCAGTTAAAA---------GTTT--AAAAACCAATCCG--C--TTGAC--TATGGTCTG-ATCGGGATGGACTGGATC---C---G---CTTGAAACTGTCTATGGNTGGAGCAGTGACAG----CTACC-----TAA-TGGTAAAGCGTTCCATATCCTGATACCA-TCT-G-GAAA----GATTTCTGGTAAACGAGTGTCCTCGCATACGGCACCAAGAAAGTGTTGT--T--TGCCTCTTGG-------A----GATATGGT------------------C------------------GGAATATCGATCAACTGATACACAACCCT-GAACATCATGATGACTTTGG-CCTGGGCTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTT
gi|1 : AA---------GTTA--AAATACTG-TACA--T--CTAAC--TTGGGTCTG-ATGGAGATAGACTGGATCTTTC---A---CTTGAAATTATCTATTTATGGAGATGTGATAG----CT-----------------------------TC--GATTCTA-TCT-G-GGAG----GTCTTC---------AGT--TCTTGCATACGACACCAAGAA-GTGTTGT--TATTACCTCTTGGCACCAGGA----GAT-TGGA------------------T------------------GGATTATCATTCAACTGATACAAAACTCTAAAACACCATG
gi|1 : atT-GAACATCATGATGACTTTGTTCCTGGGCTTTACGTTCCTGGAATGTTGGCCTCTGGAGTTgcgcacaataaattgattatttatgtgttaatttatgttcattttgaacatcatgatgactttgttcctgggctttacgttcctggaatgttggcctctggagttgatccaatatgttgaagtcactgctggttgtcctgcagtctgggaataccgtgggagcagctctccgttgagccatctccaacttgtttatgaatgttttct
gi|10 : ataagttaaaatactgtacatctaacttgggtctgatggagatagactggatctttcacttgaaattatctatttatggagatgtgatagcttcgattctatctgggaggtcttcagttcttgcatacgacaccaagaagtgttgttattacctcttggcaccaggagattggatggattatcattcaactgatacaaaactctaaaacaccatggcgcacaataaattgattatttatgtgttaatttatgttcatttTGTGTAGTGAATAGATGACTGT------ATAAACAAATTTTCTAAAATGATTTT--TACAGTACAGTTAAAA---------GTTT--AAAA-CCAA--------------------GTGTGCAT-------GACTG---T---C---A---CTTGAAACTGTCCACGGATGGAGCAGTGACAG----CTA-C-----TAA-TGGTAATGCGTTCCAAATCCTGATACGA-TCTAG-GAAAAAC-AATTTATGGTAAACAAGTGACATTACATATTGCACCAAAAAAGTGTTGTTAT--TGCTTCCTGG-------A----GATATGGT------------------C------------------AGgatccaatatgttgaagtcactgctggttgtcctgcagtctgggaataccgtgggagcagctctccgttgagccatctccaacttgtttatgaatgttttct
gi|12 : aagctataccaattctTTCTTTTATCCGTATA-ATTAAGGTACTTC-ACCACTATG---AGTG----TATACTCCTACCGGCATGTGAAGTGCAAAG-----------TTTATTAATGAATGTTCTAAAAAAAAATT-GTACTGTACAGTTAAAA---------TTAA--AAAAAACAATCCG--C--TTGAC--TATGGTCTG-ATCGGGTTCGAACGGATC---TGTAG---CTTAAAACTGcaccacaagatt
gi|13 : TTCTTCT-TCCATATA-A----TGTGCCTC-ACCACTATA---AGTGCCTGTATACTTGTACAGGCATGTGTAATGCAAAGACGACTGT--ATTTATAAATGAATATTCTAAAAGAACTTT-GTAAAGTGCAGTTAAAG---------GTTT---AAAACAAGTCTG--A--TGGACTATATGGTTTG-ATCGGAATGAACTGGA
gi|14 : tcCTTTT-TCCTT-TA-A----TCTAATTCCACCACTATATAAATTG----TCTACTAATACCGACATGTGTAATGCAAAAACAAC--TGTATTT---AATCAATTTTCT--AAGAAGTTT-G
gi|15 : cctgaCTTCT-TTCGTGTA-A----GGTACTTC-ACCACTAAT---TGTG----TAAACTCACACCATCATATGCAGTGCAAAAATGACTGT----------ATAAACATT--------ATT----TACACTACAGTTAAAA---------GTTA--AAAATCCTGTGCG--T--TTGAC--TAGGGTTTG-ATTGGGATGGATTGaaaacctgaaaaaatgaacaagaaatacttggtttggatctgtcacttgaaaccaacta
gi|16 : TATAAATTAATTTTCTAAAAGT-TTTT-GTACAGTGAAGTTAAAATAATACAGTGCAT--ATAAAATAATGTG--CACTTGAC--TGTGGTCTG-ATCATGATAGACTGGTTCTGTC---G---CTTGAAACTGTCTATGGATTGAGCAGTAACAG----CTA-C-----TAA-Tcctgtcac
gi|17 : ctgTTCTTCT-TCTGTATA-A----GGTACTTC-ACCATAATG---AGTG----TATACTCATACTGGCATGTGTGGTGCAAAGACGACTGTGCATTTATAA---------C----AGAA-TTT-GTACAGTGCAGTTAAAA---------GTTT--AAAAACAAATCTG--T--TTAA
gi|18 : tTTCCTCT-TCCATGTA-A----GGTACTTC-ACCACTA-----AGTG----TATACTCGTACCGCCATGTGTAGTGCAAAGACGACTGTGTATTTATTAATGGATGTTCTAAAATAATTTA-ATACAGTGAAGTTAGAA---------GTTgagttgctgaagactgg
gi|19 : tTTTTTCT-TCCATGTA-A----TGTACTTC-ACCACTATA---AGTG----TATACTCATACCGGCGTGa
gi|2 : aatattttcttcttttTTCTTCT-TCCATATA-A----GATACTTC-ACCACTAGA---AGTG----TATACTCGTACCGGCATGTGTAGTACAAAGATGACTGTGTATTTACACATGAATGTTCTAGAAGAATCTT-GTACAGTGCATTTAAAA---------GTTT--AAAAACCAATCTG--C--CTGAC--TATGGTCTG-ATCGGGGTGGACT---TT---T---G---CTTGAAACTGTCTATGGTTGGAGCAGTGACAG----CTACTTCCGGTAG-TGGTAAAGTGTTCCATATCCTGATACTG-TCT-G-G-------GATGTTTGGTAAACGAGTGTCCCCGCATACAGCATTAAGAAAGTGTT-T--T--TGCCTCTTG-------------GATATGGT------------------C------------------GGAATATCAATTAACGGATATACAACCCT-GAACATCATGATGACAGTGG-CCTGGGCTCTGCGCTTCTGGAGTTTTGGCCATTGGAGTTaatgatattg
gi|20 : TTCTTTT-TCCGTTAA-A----GGTACTTC-ACCACTACA---AGTG----TGTACTCGTACCGGCATATGTATTGCAAAGA
gi|21 : -ACCACTTTA---TGTG----TATACCCGTACCGGCATGTGTAG
gi|22 : TA---AGTG----TATACTCGTAACGGCATGTGTAGTGCAA
gi|3 : TCTTCT-TCCTTTTA-T----ATTACTTC-ACCACTA-----GGTG----TATACTCCTACCGGCAT-----------AGACTCGTGTGTATTTATTAATGAATTTTCTAAAAGAGTTTTTGTACAGTGCAGTTAAAA---------GTTT--AATA--TAATATGTAC--TTGAC--TATGGTCTG-ATTGAGATGAACCGAATCTGTC---A---CTTAAAACCATCTGTGGTTGGAGCAGTTACAG----CTA-C-----TAA-TAGTAAAACATTCCATATCCTGATACCG-TAT-G-GAAAGAACGATTTCTGGTAAACAAATGTCCTCCTATACAGCACCA-------GTTA---T--TGCCTCTTGG-------A----GATCTGGT------------------CGACACCAGGAGAGTGAATGGAATGCCAATCAACTGATACACAACCCT-TAACATCATAATGACTTTGG-CCTGGGCTGTG
gi|4 : TCGTCA-TCCGCATA-A----GGTACTTC-ACAACTGTA---AGTG----TATACTCGTACCGACATGTGTAGTGTAAAGACGGTTGTGTATTTATAAATGAATCTTTTAAAACAAGTGT-GTATAGTGCAGTTGAAA---------GTT---AAAAACACGTCCG--C--TTGAC--TATAGTCTG-ATCGGGATGGACTGGATC-------------------------TGGTTGGGGCAATGACAG----CT-CC-----TAA-CG-TAAAGCGTTCCATATCCTGATAACA-TCA-GAGAAAAT--GTTTTCTGGTAAACGAATGTCCTCGCATACGGCACCAAGAAAGTGTTGTTGT--TGCCTCTTGG-------AGATCGATATGGTCGGCACCAGATGATCGGAC------------------GGAATACCTATCAACTGATATA
gi|5 : TTGG-CCTGGGCTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTT
gi|6 : GTATATGACTATAGCAGTGGCAG----TTAC------TGC-TGGTAAGGCGTTCCATATTCTGATAACA-AAT-G-GGAAAAACGATTTCTGGTAAGCAAGTGTCCACGCATACGGTACCAAGAAAGTGTTGTTAT--TGCCTCTTTG-------A----GATATGGTCGGCACCAGATGATTGGAC------------------GGAATATCGATAAACTGATATACAACCCT-GAAAATCATGATGGCTTTGG-CCTGGGCTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTTgatccattatgttggatacactgctggttgtccggtagtaagataacaccatctgagcaaccctccgttgaaccatctccatttgccgtgcacgggttccagataacgctagcacattctgtgagtgccctgataaaggtttcgtagcatatagggctttgatcttacgtgaacactggtggatattgcgccgcaggaaatcaaggatggagtttgccttcttcgtcacgtgtttgatgtggtggttccagttccggctcctatggatatttacccccaagatacttggctgagtctgctgcatcta
gi|7 : TTCTTCT-TCCGTATG-A----GGTACTTC-ACCACTATA---AGTG----TATACTCGTACCGGCATGTGTAGTACAAAGACGACTGTGTATTTACACATGAATGTTCTAAAAGAATTTT-GTACAGCTC-----------------GTTT--AAAAACCAATCCG--C--TTGAC--TACGGTCTG-ATCTGAATGGACTGGATC---TGTAG---CTTGAAACTGTCTATGGTTGGAGCAGTGACAGAGCTCTA-C-----TAC-TGGTAAA--GTTCCATATCCTTATCCCGTTTT-G-GAAAAAT-GATTTCTGGCAAATGTGTGTCCTCACATATGGCACCAAGAAAGTGTTGT--T--gatccattatgttggatacactgctggttgtccggtagtaagataacaccatctgagcaaccctccgttgaaccatctccatt
gi|8 : TGG-CCTGGATTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTTat
gi|9 : TCTTCT-TCCTTATATA----GGTACTGG-GGAACTTTA---AGTG----TATACTCGTACCGGCATGTGTAGTACAAAGACAACTGT--ATTTACACATGAATGTTCTAAAAGAATTTT-GAACAGTGCATTTAAAA---------GTTTAAAAAAAACAATCCA--C--TTGGC--TATGGTCTG-ATCGAAATGGACTGGATC---T---GTACCTTGAAACTGTCAATGGTTTGAGCAGTGGCAG----CTAC-------AACTGGTAAAGCGTTCCATATCCTGATACCA-TCT-G-GGAAAAACGATTTCTGAT-AATGAGTGTCCTgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatagggcttaagtctcacgtggacacagatggatgttgcgccgtaggaaagcaagggtggaatttgcctacttcgtcgtctggttgata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CGGATTACGCTAGCATATTCTGTGAGTGGTCTGATTAAGGGTTTATAGCATAGAACTGTGGTTTCGGGGTGTCACTAGTAAATGTTGCGCCGCAGATAGGCAAGGGTGAAATTAGACTTCTTCGGCATCTGTTTGTTGTGATGATTCCATTTCAGATTGCTATGGTTGTTAACCCCTAAATACTTGGCTGAGTCTGCTGCATCTA
Alignments
lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 11 111111111 44444444444 3333333 2 22222222222222 4444444444444444444444444444444444444
lowQualScore : 3 0 2 3 6666 2 1 444 5555 11 0 2 1 3 222222222 666 1 0 0 77777 55 3 77777777777 1 9999 2222222 5 5 5 99 5 5 1 2 33333333333333 3 0000000000000000000000000000000000000 8 6
lowQualScore : . . . . .... . . ... .... .. . . . . ......... ... . . . ..... .. . ........... . .... ....... . . . .. . . . . .............. . ..................................... . .
lowQualScore : 1 7 2 1 5555 9 9 777 7777 00 7 1 6 1 333333333 222 3 2 4 33333 00 6 44444444444 3 4444 0000000 0 7 7 77 7 7 4 9 33333333333333 2 2222222222222222222222222222222222222 0 7
consensus : TTCTTCT-TCCGTATA-A----GGTACTTC-ACCACTATA---AGTG----TATACTCGTACCGGCATGTGTAGTGCAAAGACGACTGTGTATTTATAAATGAATNTTCTAAAAGAATTTT-GTACAGTGCAGTTAAAA---------GTTT--AAAAACCAATCCG--C--TTGAC--TATGGTCTG-ATCGGGATGGACTGGATC---C---G---CTTGAAACTGTCTATGGTTGGAGCAGTGACAG----CTACC-----TAA-TGGTAAAGCGTTCCATATCCTGATACCG-TCT-GGG-AA-AA-CGATTTCTGGTAAACGAGTGTCCTCGCATACGGCACCAAGAAAGTGTTGTTATTGCCTCTT-------GGA----GATATGGT------------------C------------------GGAATATCAATCAACTGATATACAACCCT-GAACATCATGATGACTTTGG-CCTGGGCTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTT
Reference ( family-534 ) : TTCTTCT-TCCGTATA-A----GGTACTTC-ACCACTATA---AGTG----TATACTCGTACCGGCATGTGTAGTGCAAAGACGACTGTGTATTTATAAATGAATNTTCTAAAAGAATTTT-GTACAGTGCAGTTAAAA---------GTTT--AAAAACCAATCCG--C--TTGAC--TATGGTCTG-ATCGGGATGGACTGGATC---C---G---CTTGAAACTGTCTATGGTTGGAGCAGTGACAG----CTACC-----TAA-TGGTAAAGCGTTCCATATCCTGATACCG-TCT-GGG-AA-AA-CGATTTCTGGTAAACGAGTGTCCTCGCATACGGCACCAAGAAAGTGTTGTT-TTGCCTCTT-------GGA----GATATGGT------------------C------------------GGAATATCAATCAACTGATATACAACCCT-GAACATCATGATGACTTTGG-CCTGGGCTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTT
gi|1 : AA---------GTTA--AAATACTG-TACA--T--CTAAC--TTGGGTCTG-ATGGAGATAGACTGGATCTTTC---A---CTTGAAATTATCTATTTATGGAGATGTGATAG----CT
gi|1 : atGTTCTTGCATACGACACCAAG-AAGTGTTGTTATTACCTCTTGGCACCAGGA----GAT-TGGA------------------T------------------GGATTATCATTCAACTGATACAAAACTCTAAAACACCATGtcgattctatctgggaggtcttcagttcttgcatacgacaccaagaagtgttgttattacctcttggcaccaggagattggatggattatcattcaactgatacaaaactctaaaacaccatggcgcacaataaattgattatttatgtgttaatttatgttcattttgaacatcatgatgactttgttcctgggctttacgttcctggaatgttggcctctggagttgatccaatatgttgaagtcactgctggttgtcctgcagtctgggaataccgtgggagcagctctccgttgagccatctccaacttgtttatgaatgttttct
gi|1 : ataagttaaaatactgtacatctaacttgggtctgatggagatagactggatctttcacttgaaattatctatttatggagatgtgatagcttcgattctatctgggaggtcttcaT-GAACATCATGATGACTTTGTTCCTGGGCTTTACGTTCCTGGAATGTTGGCCTCTGGAGTTgcgcacaataaattgattatttatgtgttaatttatgttcattttgaacatcatgatgactttgttcctgggctttacgttcctggaatgttggcctctggagttgatccaatatgttgaagtcactgctggttgtcctgcagtctgggaataccgtgggagcagctctccgttgagccatctccaacttgtttatgaatgttttct
gi|10 : ataagttaaaatactgtacatctaacttgggtctgatggagatagactggatctttcacttgaaattatctatttatggagatgtgatagcttcgattctatctgggaggtcttcagttcttgcatacgacaccaagaagtgttgttattacctcttggcaccaggagattggatggattatcattcaactgatacaaaactctaaaacaccatggcgcacaataaattgattatttatgtgttaatttatgttcatttTGTGTAGTGAATAGATGACTGT------ATAAACAAATTTTCTAAAATGATTTT--TACAGTACAGTTAAAA---------GTTT--AAAA-CCAA--------------------GTGTGCAT-------GACTG---T---C---A---CTTGAAACTGTCCACGGATGGAGCAGTGACAG----CTA-C-----TAA-TGGTAATGCGTTCCAAATCCTGATACGA-TCTAGGA-AA-AA-CAATTTATGGTAAACAAGTGACATTACATATTGCACCAAAAAAGTGTTGTTATTGCTTCCT-------GGA----GATATGGT------------------C------------------AGgatccaatatgttgaagtcactgctggttgtcctgcagtctgggaataccgtgggagcagctctccgttgagccatctccaacttgtttatgaatgttttct
gi|12 : aagctataccaattctTTCTTTTATCCGTATA-ATTAAGGTACTTC-ACCACTATG---AGTG----TATACTCCTACCGGCATGTGAAGTGCAAAG-----------TTTATTAATGAATGTTCTAAAAAAAAATT-GTACTGTACAGTTAAAA---------TTAA--AAAAAACAATCCG--C--TTGAC--TATGGTCTG-ATCGGGTTCGAACGGATC---TGTAG---CTTAAAACTGcaccacaagatt
gi|13 : TTCTTCT-TCCATATA-A----TGTGCCTC-ACCACTATA---AGTGCCTGTATACTTGTACAGGCATGTGTAATGCAAAGACGACTGT--ATTTATAAATGAATATTCTAAAAGAACTTT-GTAAAGTGCAGTTAAAG---------GTTT---AAAACAAGTCTG--A--TGGACTATATGGTTTG-ATCGGAATGAACTGGA
gi|14 : tcCTTTT-TCCTT-TA-A----TCTAATTCCACCACTATATAAATTG----TCTACTAATACCGACATGTGTAATGCAAAAACAAC--TGTATTT---AATCAATTTTCT--AAGAAGTTT-G
gi|15 : cctgaCTTCT-TTCGTGTA-A----GGTACTTC-ACCACTAAT---TGTG----TAAACTCACACCATCATATGCAGTGCAAAAATGACTGT----------ATAAACATT--------ATT----TACACTACAGTTAAAA---------GTTA--AAAATCCTGTGCG--T--TTGAC--TAGGGTTTG-ATTGGGATGGATTGaaaacctgaaaaaatgaacaagaaatacttggtttggatctgtcacttgaaaccaacta
gi|16 : TATAAATTAATTTTCTAAAAGT-TTTT-GTACAGTGAAGTTAAAATAATACAGTGCAT--ATAAAATAATGTG--CACTTGAC--TGTGGTCTG-ATCATGATAGACTGGTTCTGTC---G---CTTGAAACTGTCTATGGATTGAGCAGTAACAG----CTA-C-----TAA-Tcctgtcac
gi|17 : ctgTTCTTCT-TCTGTATA-A----GGTACTTC-ACCATAATG---AGTG----TATACTCATACTGGCATGTGTGGTGCAAAGACGACTGTGCATTTATAA---------C----AGAA-TTT-GTACAGTGCAGTTAAAA---------GTTT--AAAAACAAATCTG--T--TTAA
gi|18 : tTTCCTCT-TCCATGTA-A----GGTACTTC-ACCACTA-----AGTG----TATACTCGTACCGCCATGTGTAGTGCAAAGACGACTGTGTATTTATTAATGGATGTTCTAAAATAATTTA-ATACAGTGAAGTTAGAA---------GTTgagttgctgaagactgg
gi|19 : tTTTTTCT-TCCATGTA-A----TGTACTTC-ACCACTATA---AGTG----TATACTCATACCGGCGTGa
gi|2 : aatattttcttcttttTTCTTCT-TCCATATA-A----GATACTTC-ACCACTAGA---AGTG----TATACTCGTACCGGCATGTGTAGTACAAAGATGACTGTGTATTTACACATGAATGTTCTAGAAGAATCTT-GTACAGTGCATTTAAAA---------GTTT--AAAAACCAATCTG--C--CTGAC--TATGGTCTG-ATCGGGGTGGACT---TT---T---G---CTTGAAACTGTCTATGGTTGGAGCAGTGACAG----CTACTTCCGGTAG-TGGTAAAGTGTTCCATATCCTGATACTG-TCT-GG---------GATGTTTGGTAAACGAGTGTCCCCGCATACAGCATTAAGAAAGTGT--TT-TTGCCTCTT-------G------GATATGGT------------------C------------------GGAATATCAATTAACGGATATACAACCCT-GAACATCATGATGACAGTGG-CCTGGGCTCTGCGCTTCTGGAGTTTTGGCCATTGGAGTTaatgatattg
gi|20 : TTCTTTT-TCCGTTAA-A----GGTACTTC-ACCACTACA---AGTG----TGTACTCGTACCGGCATATGTATTGCAAAGA
gi|21 : -ACCACTTTA---TGTG----TATACCCGTACCGGCATGTGTAG
gi|22 : TA---AGTG----TATACTCGTAACGGCATGTGTAGTGCAA
gi|3 : TCTTCT-TCCTTTTA-T----ATTACTTC-ACCACTA-----GGTG----TATACTCCTACCGGCAT-----------AGACTCGTGTGTATTTATTAATGAATTTTCTAAAAGAGTTTTTGTACAGTGCAGTTAAAA---------GTTT--AATA--TAATATGTAC--TTGAC--TATGGTCTG-ATTGAGATGAACCGAATCTGTC---A---CTTAAAACCATCTGTGGTTGGAGCAGTTACAG----CTA-C-----TAA-TAGTAAAACATTCCATATCCTGATACCG-TAT-GGA-AAGAA-CGATTTCTGGTAAACAAATGTCCTCCTATACAGCACCA-------GTTA---TTGCCTCTT-------GGA----GATCTGGT------------------CGACACCAGGAGAGTGAATGGAATGCCAATCAACTGATACACAACCCT-TAACATCATAATGACTTTGG-CCTGGGCTGTG
gi|4 : TCGTCA-TCCGCATA-A----GGTACTTC-ACAACTGTA---AGTG----TATACTCGTACCGACATGTGTAGTGTAAAGACGGTTGTGTATTTATAAATGAATCTTTTAAAACAAGTGT-GTATAGTGCAGTTGAAA---------GTT---AAAAACACGTCCG--C--TTGAC--TATAGTCTG-ATCGGGATGGACTGGATC-------------------------TGGTTGGGGCAATGACAG----CT-CC-----TAA-CG-TAAAGCGTTCCATATCCTGATAACA-TCA-GAG-AA-AA-TGTTTTCTGGTAAACGAATGTCCTCGCATACGGCACCAAGAAAGTGTTGTTGTTGCCTCTT-------GGAGATCGATATGGTCGGCACCAGATGATCGGAC------------------GGAATACCTATCAACTGATATA
gi|5 : TTGG-CCTGGGCTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTT
gi|6 : GTATATGACTATAGCAGTGGCAG----TTAC------TGC-TGGTAAGGCGTTCCATATTCTGATAACA-AAT-GGG-AA-AAACGATTTCTGGTAAGCAAGTGTCCACGCATACGGTACCAAGAAAGTGTTGTTATTGCCTCTT-------TGA----GATATGGTCGGCACCAGATGATTGGAC------------------GGAATATCGATAAACTGATATACAACCCT-GAAAATCATGATGGCTTTGG-CCTGGGCTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTTgatccattatgttggatacactgctggttgtccggtagtaagataacaccatctgagcaaccctccgttgaaccatctccatttgccgtgcacgggttccagataacgctagcacattctgtgagtgccctgataaaggtttcgtagcatatagggctttgatcttacgtgaacactggtggatattgcgccgcaggaaatcaaggatggagtttgccttcttcgtcacgtgtttgatgtggtggttccagttccggctcctatggatatttacccccaagatacttggctgagtctgctgcatcta
gi|7 : TTCTTCT-TCCGTATG-A----GGTACTTC-ACCACTATA---AGTG----TATACTCGTACCGGCATGTGTAGTACAAAGACGACTGTGTATTTACACATGAATGTTCTAAAAGAATTTT-GTACAGCTC-----------------GTTT--AAAAACCAATCCG--C--TTGAC--TACGGTCTG-ATCTGAATGGACTGGATC---TGTAG---CTTGAAACTGTCTATGGTTGGAGCAGTGACAGAGCTCTA-C-----TAC-TGGTAAA--GTTCCATATCCTTATCCCGTTTT-GGA-AA-AA-TGATTTCTGGCAAATGTGTGTCCTCACATATGGCACCAAGAAAGTGTTGTT-gatccattatgttggatacactgctggttgtccggtagtaagataacaccatctgagcaaccctccgttgaaccatctccatt
gi|8 : TGG-CCTGGATTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTTat
gi|9 : TCTTCT-TCCTTATATA----GGTACTGG-GGAACTTTA---AGTG----TATACTCGTACCGGCATGTGTAGTACAAAGACAACTGT--ATTTACACATGAATGTTCTAAAAGAATTTT-GAACAGTGCATTTAAAA---------GTTTAAAAAAAACAATCCA--C--TTGGC--TATGGTCTG-ATCGAAATGGACTGGATC---T---GTACCTTGAAACTGTCAATGGTTTGAGCAGTGGCAG----CTAC-------AACTGGTAAAGCGTTCCATATCCTGATACCA-TCT-GGGAAA-AA-CGATTTCTGAT-AATGAGTGTCCTgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatagggcttaagtctcacgtggacacagatggatgttgcgccgtaggaaagcaagggtggaatttgcctacttcgtcgtctggttgata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CGGATTACGCTAGCATATTCTGTGAGTGGTCTGATTAAGGGTTTATAGCATAGAACTGTGGTTTCGGGGTGTCACTAGTAAATGTTGCGCCGCAGATAGGCAAGGGTGAAATTAGACTTCTTCGGCATCTGTTTGTTGTGATGATTCCATTTCAGATTGCTATGGTTGTTAACCCCTAAATACTTGGCTGAGTCTGCTGCATCTA
Alignments
lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 111111111 44444444444 3333333 22222222222222 4444444444444444444444444444444444444
lowQualScore : 3 0 2 3 6666 2 1 444 5555 1 44 0 2 1 3 222222222 666 1 0 0 77777 55 3 77777777777 1 9999 2222222 5 5 5 99 5 5 1 33333333333333 3 0000000000000000000000000000000000000 8 6
lowQualScore : . . . . .... . . ... .... . .. . . . . ......... ... . . . ..... .. . ........... . .... ....... . . . .. . . . .............. . ..................................... . .
lowQualScore : 1 7 2 1 5555 9 9 777 7777 2 88 7 1 6 1 333333333 222 3 2 4 33333 00 6 44444444444 3 4444 0000000 0 7 7 77 7 7 4 33333333333333 2 2222222222222222222222222222222222222 0 7
consensus : TTCTTCT-TCCGTATA-A----GGTACTTC-ACCACTATA---AGTG----TATACTCGTACCGGCATGTGTAGTGCAAAGACGACTGTGTATTTATAAATGAATNTTCTAAAAGAATTTT-GTACAGTGCAGTTAAAA---------GTTT--AAAAACCAATCCG--C--TTGAC--TATGGTCTG-ATCGGGATGGACTGGATC---C---G---CTTGAAACTGTCTATGGTTGGAGCAGTGACAG----CTACC-----TAA-TGGTAAAGCGTTCCATATCCTGATACCG-TCT-GGG-AA-AA-CGATTTCTGGTAAACGAGTGTCCTCGCATACGGCACCAAGAAAGTGTTGTTATTGCCTCTT-------GGA----GATATGGT------------------C------------------GGAATATCAATCAACTGATATACAACCCT-GAACATCATGATGACTTTGG-CCTGGGCTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTT
Reference ( family-534 ) : TTCTTCT-TCCGTATA-A----GGTACTTC-ACCACTATA---AGTG----TATACTCGTACCGGCATGTGTAGTGCAAAGACGACTGTGTATTTATAAATGAATNTTCTAAAAGAATTTT-GTACAGTGCAGTTAAAA---------GTTT--AAAAACCAATCCG--C--TTGAC--TATGGTCTG-ATCGGGATGGACTGGATC---C---G---CTTGAAACTGTCTATGGTTGGAGCAGTGACAG----CTACC-----TAA-TGGTAAAGCGTTCCATATCCTGATACCG-TCT-GGG-AA-AA-CGATTTCTGGTAAACGAGTGTCCTCGCATACGGCACCAAGAAAGTGTTGTTATTGCCTCTT-------GGA----GATATGGT------------------C------------------GGAATATCAATCAACTGATATACAACCCT-GAACATCATGATGACTTTGG-CCTGGGCTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTT
gi|1 : AA---------GTTA--AAATACTG-TACA--T--CTAAC--TTGGGTCTG-ATGGAGATAGACTGGATCTTTC---A---CTTGAAATTATCTATTTATGGAGATGTGATAG----CT
gi|1 : atGTTCTTGCATACGACACCAAGAA-GTGTTGTTATTACCTCTTGGCACCAGGA----GAT-TGGA------------------T------------------GGATTATCATTCAACTGATACAAAACTCTAAAACACCATGtcgattctatctgggaggtcttcagttcttgcatacgacaccaagaagtgttgttattacctcttggcaccaggagattggatggattatcattcaactgatacaaaactctaaaacaccatggcgcacaataaattgattatttatgtgttaatttatgttcattttgaacatcatgatgactttgttcctgggctttacgttcctggaatgttggcctctggagttgatccaatatgttgaagtcactgctggttgtcctgcagtctgggaataccgtgggagcagctctccgttgagccatctccaacttgtttatgaatgttttct
gi|1 : ataagttaaaatactgtacatctaacttgggtctgatggagatagactggatctttcacttgaaattatctatttatggagatgtgatagcttcgattctatctgggaggtcttcaT-GAACATCATGATGACTTTGTTCCTGGGCTTTACGTTCCTGGAATGTTGGCCTCTGGAGTTgcgcacaataaattgattatttatgtgttaatttatgttcattttgaacatcatgatgactttgttcctgggctttacgttcctggaatgttggcctctggagttgatccaatatgttgaagtcactgctggttgtcctgcagtctgggaataccgtgggagcagctctccgttgagccatctccaacttgtttatgaatgttttct
gi|10 : ataagttaaaatactgtacatctaacttgggtctgatggagatagactggatctttcacttgaaattatctatttatggagatgtgatagcttcgattctatctgggaggtcttcagttcttgcatacgacaccaagaagtgttgttattacctcttggcaccaggagattggatggattatcattcaactgatacaaaactctaaaacaccatggcgcacaataaattgattatttatgtgttaatttatgttcatttTGTGTAGTGAATAGATGACTGT------ATAAACAAATTTTCTAAAATGATTTT--TACAGTACAGTTAAAA---------GTTT--AAAA-CCAA--------------------GTGTGCAT-------GACTG---T---C---A---CTTGAAACTGTCCACGGATGGAGCAGTGACAG----CTA-C-----TAA-TGGTAATGCGTTCCAAATCCTGATACGA-TCTAGGA-AA-AA-CAATTTATGGTAAACAAGTGACATTACATATTGCACCAAAAAAGTGTTGTTATTGCTTCCT-------GGA----GATATGGT------------------C------------------AGgatccaatatgttgaagtcactgctggttgtcctgcagtctgggaataccgtgggagcagctctccgttgagccatctccaacttgtttatgaatgttttct
gi|12 : aagctataccaattctTTCTTTTATCCGTATA-ATTAAGGTACTTC-ACCACTATG---AGTG----TATACTCCTACCGGCATGTGAAGTGCAAAG-----------TTTATTAATGAATGTTCTAAAAAAAAATT-GTACTGTACAGTTAAAA---------TTAA--AAAAAACAATCCG--C--TTGAC--TATGGTCTG-ATCGGGTTCGAACGGATC---TGTAG---CTTAAAACTGcaccacaagatt
gi|13 : TTCTTCT-TCCATATA-A----TGTGCCTC-ACCACTATA---AGTGCCTGTATACTTGTACAGGCATGTGTAATGCAAAGACGACTGT--ATTTATAAATGAATATTCTAAAAGAACTTT-GTAAAGTGCAGTTAAAG---------GTTT---AAAACAAGTCTG--A--TGGACTATATGGTTTG-ATCGGAATGAACTGGA
gi|14 : tcCTTTT-TCCTT-TA-A----TCTAATTCCACCACTATATAAATTG----TCTACTAATACCGACATGTGTAATGCAAAAACAAC--TGTATTT---AATCAATTTTCT--AAGAAGTTT-G
gi|15 : cctgaCTTCT-TTCGTGTA-A----GGTACTTC-ACCACTAAT---TGTG----TAAACTCACACCATCATATGCAGTGCAAAAATGACTGT----------ATAAACATT--------ATT----TACACTACAGTTAAAA---------GTTA--AAAATCCTGTGCG--T--TTGAC--TAGGGTTTG-ATTGGGATGGATTGaaaacctgaaaaaatgaacaagaaatacttggtttggatctgtcacttgaaaccaacta
gi|16 : TATAAATTAATTTTCTAAAAGT-TTTT-GTACAGTGAAGTTAAAATAATACAGTGCAT--ATAAAATAATGTG--CACTTGAC--TGTGGTCTG-ATCATGATAGACTGGTTCTGTC---G---CTTGAAACTGTCTATGGATTGAGCAGTAACAG----CTA-C-----TAA-Tcctgtcac
gi|17 : ctgTTCTTCT-TCTGTATA-A----GGTACTTC-ACCATAATG---AGTG----TATACTCATACTGGCATGTGTGGTGCAAAGACGACTGTGCATTTATAA---------C----AGAA-TTT-GTACAGTGCAGTTAAAA---------GTTT--AAAAACAAATCTG--T--TTAA
gi|18 : tTTCCTCT-TCCATGTA-A----GGTACTTC-ACCACTA-----AGTG----TATACTCGTACCGCCATGTGTAGTGCAAAGACGACTGTGTATTTATTAATGGATGTTCTAAAATAATTTA-ATACAGTGAAGTTAGAA---------GTTgagttgctgaagactgg
gi|19 : tTTTTTCT-TCCATGTA-A----TGTACTTC-ACCACTATA---AGTG----TATACTCATACCGGCGTGa
gi|2 : aatattttcttcttttTTCTTCT-TCCATATA-A----GATACTTC-ACCACTAGA---AGTG----TATACTCGTACCGGCATGTGTAGTACAAAGATGACTGTGTATTTACACATGAATGTTCTAGAAGAATCTT-GTACAGTGCATTTAAAA---------GTTT--AAAAACCAATCTG--C--CTGAC--TATGGTCTG-ATCGGGGTGGACT---TT---T---G---CTTGAAACTGTCTATGGTTGGAGCAGTGACAG----CTACTTCCGGTAG-TGGTAAAGTGTTCCATATCCTGATACTG-TCT-GG---------GATGTTTGGTAAACGAGTGTCCCCGCATACAGCATTAAGAAAGTGTT-T--TTGCCTCTT-------G------GATATGGT------------------C------------------GGAATATCAATTAACGGATATACAACCCT-GAACATCATGATGACAGTGG-CCTGGGCTCTGCGCTTCTGGAGTTTTGGCCATTGGAGTTaatgatattg
gi|20 : TTCTTTT-TCCGTTAA-A----GGTACTTC-ACCACTACA---AGTG----TGTACTCGTACCGGCATATGTATTGCAAAGA
gi|21 : -ACCACTTTA---TGTG----TATACCCGTACCGGCATGTGTAG
gi|22 : TA---AGTG----TATACTCGTAACGGCATGTGTAGTGCAA
gi|3 : TCTTCT-TCCTTTTA-T----ATTACTTC-ACCACTA-----GGTG----TATACTCCTACCGGCAT-----------AGACTCGTGTGTATTTATTAATGAATTTTCTAAAAGAGTTTTTGTACAGTGCAGTTAAAA---------GTTT--AATA--TAATATGTAC--TTGAC--TATGGTCTG-ATTGAGATGAACCGAATCTGTC---A---CTTAAAACCATCTGTGGTTGGAGCAGTTACAG----CTA-C-----TAA-TAGTAAAACATTCCATATCCTGATACCG-TAT-GGA-AAGAA-CGATTTCTGGTAAACAAATGTCCTCCTATACAGCACCA----------GTTATTGCCTCTT-------GGA----GATCTGGT------------------CGACACCAGGAGAGTGAATGGAATGCCAATCAACTGATACACAACCCT-TAACATCATAATGACTTTGG-CCTGGGCTGTG
gi|4 : TCGTCA-TCCGCATA-A----GGTACTTC-ACAACTGTA---AGTG----TATACTCGTACCGACATGTGTAGTGTAAAGACGGTTGTGTATTTATAAATGAATCTTTTAAAACAAGTGT-GTATAGTGCAGTTGAAA---------GTT---AAAAACACGTCCG--C--TTGAC--TATAGTCTG-ATCGGGATGGACTGGATC-------------------------TGGTTGGGGCAATGACAG----CT-CC-----TAA-CG-TAAAGCGTTCCATATCCTGATAACA-TCA-GAG-AA-AA-TGTTTTCTGGTAAACGAATGTCCTCGCATACGGCACCAAGAAAGTGTTGTTGTTGCCTCTT-------GGAGATCGATATGGTCGGCACCAGATGATCGGAC------------------GGAATACCTATCAACTGATATA
gi|5 : TTGG-CCTGGGCTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTT
gi|6 : GTATATGACTATAGCAGTGGCAG----TTAC------TGC-TGGTAAGGCGTTCCATATTCTGATAACA-AAT-GGG-AA-AAACGATTTCTGGTAAGCAAGTGTCCACGCATACGGTACCAAGAAAGTGTTGTTATTGCCTCTT-------TGA----GATATGGTCGGCACCAGATGATTGGAC------------------GGAATATCGATAAACTGATATACAACCCT-GAAAATCATGATGGCTTTGG-CCTGGGCTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTTgatccattatgttggatacactgctggttgtccggtagtaagataacaccatctgagcaaccctccgttgaaccatctccatttgccgtgcacgggttccagataacgctagcacattctgtgagtgccctgataaaggtttcgtagcatatagggctttgatcttacgtgaacactggtggatattgcgccgcaggaaatcaaggatggagtttgccttcttcgtcacgtgtttgatgtggtggttccagttccggctcctatggatatttacccccaagatacttggctgagtctgctgcatcta
gi|7 : TTCTTCT-TCCGTATG-A----GGTACTTC-ACCACTATA---AGTG----TATACTCGTACCGGCATGTGTAGTACAAAGACGACTGTGTATTTACACATGAATGTTCTAAAAGAATTTT-GTACAGCTC-----------------GTTT--AAAAACCAATCCG--C--TTGAC--TACGGTCTG-ATCTGAATGGACTGGATC---TGTAG---CTTGAAACTGTCTATGGTTGGAGCAGTGACAGAGCTCTA-C-----TAC-TGGTAAA--GTTCCATATCCTTATCCCGTTTT-GGA-AA-AA-TGATTTCTGGCAAATGTGTGTCCTCACATATGGCACCAAGAAAGTGTTGTTATgatccattatgttggatacactgctggttgtccggtagtaagataacaccatctgagcaaccctccgttgaaccatctccatt
gi|8 : TGG-CCTGGATTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTT
gi|9 : TCTTCT-TCCTTATATA----GGTACTGG-GGAACTTTA---AGTG----TATACTCGTACCGGCATGTGTAGTACAAAGACAAC--TGTATTTACACATGAATGTTCTAAAAGAATTTT-GAACAGTGCATTTAAAA---------GTTTAAAAAAAACAATCCA--C--TTGGC--TATGGTCTG-ATCGAAATGGACTGGATC---T---GTACCTTGAAACTGTCAATGGTTTGAGCAGTGGCAG----CTAC-------AACTGGTAAAGCGTTCCATATCCTGATACCA-TCT-GGGAAA-AA-CGATTTCTGAT-AATGAGTGTCCTgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatagggcttaagtctcacgtggacacagatggatgttgcgccgtaggaaagcaagggtggaatttgcctacttcgtcgtctggttgata
blockSeqs : . A T . C T TAA CCTG T GT G A T TAATACAGT TAA A CAC TA C TGTAG A AGCT CTTCCGG C T . GA G A A GGAGATC A CGACACCAGGAGAGTGAAT . .
blockSeqs : . G . . . T . . T GC A C . . T A TAC . . TGTCG A . CC . . . A . . A GGA A CGGCACCAGATGATCGGAC . .
blockSeqs : . A . . . A . . T GT T G . . A T C . . TGTCA T . C . . . G . . A GGA C CGGCACCAGATGATTGGAC . .
blockSeqs : . G . . . T . . T GT A T . . T A A . . TGTAG T . C . . . G . . A TGA A C . .
blockSeqs : . G . . . T . . T GT T T . . A A T . . TGTAC T . C . . . A . . A G A C .
blockSeqs : . A . . . G . . T GT G T . . T A T . . CA C . C . . . . . . .
blockSeqs : . T . . . C . . T GT G T . . T A C . . TG T . C .
blockSeqs : . T . . . T . . T GT T T . . T A C . . . T .
blockSeqs : . A . . . T . . . . C G . . T A C . .
blockSeqs : . A . . . T . . . . G T . . T . C . .
blockSeqs : . A . . . T . . . . G T . . . . .
blockSeqs : . . . . . T . . . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqCons : **** GT GGA*********** CGGCACCAGATGATCGGAC******************
originalCons : TTCTTCT-TCCGTATA-A----GGTACTTC-ACCACTATA---AGTG----TATACTCGTACCGGCATGTGTAGTGCAAAGACGACTGTGTATTTATAAATGAATNTTCTAAAAGAATTTT-GTACAGTGCAGTTAAAA---------GTTT--AAAAACCAATCCG--C--TTGAC--TATGGTCTG-ATCGGGATGGACTGGATC---C---G---CTTGAAACTGTCTATGGTTGGAGCAGTGACAG----CTACC-----TAA-TGGTAAAGCGTTCCATATCCTGATACCG-TCT-GGG-AA-AA-CGATTTCTGGTAAACGAGTGTCCTCGCATACGGCACCAAGAAAGTGTTGTTATTGCCTCTT-------GGA----GATATGGT------------------C------------------GGAATATCAATCAACTGATATACAACCCT-GAACATCATGATGACTTTGG-CCTGGGCTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTT
finalCons : TTCTTCT-TCCGTATA-A----GGTACTTC-ACCACTATA---AGTG----TATACTCGTACCGGCATGTGTAGTGCAAAGACGACTGTGTATTTATAAATGAATNTTCTAAAAGAATTTT-GTACAGTGCAGTTAAAA---------GTTT--AAAAACCAATCCG--C--TTGAC--TATGGTCTG-ATCGGGATGGACTGGATC---C---G---CTTGAAACTGTCTATGGTTGGAGCAGTGACAG----CTACC-----TAA-TGGTAAAGCGTTCCATATCCTGATACCG-TCT-GGG-AA-AA-CGATTTCTGGTAAACGAGTGTCCTCGCATACGGCACCAAGAAAGTGTTGTTATTGCCTCTTGGA-----------GATATGGTCGGCACCAGATGATCGGAC------------------GGAATATCAATCAACTGATATACAACCCT-GAACATCATGATGACTTTGG-CCTGGGCTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CGGATTACGCTAGCATATTCTGTGAGTGGTCTGATTAAGGGTTTATAGCATAGAACTGTGGTTTCGGGGTGTCACTAGTAAATGTTGCGCCGCAGATAGGCAAGGGTGAAATTAGACTTCTTCGGCATCTGTTTGTTGTGATGATTCCATTTCAGATTGCTATGGTTGTTAACCCCTAAATACTTGGCTGAGTCTGCTGCATCTA
Alignments
lowQualScore : 11 111111111 44444444444 3333333 1111111
lowQualScore : 3 0 2 3 6666 2 1 444 5555 11 0 2 1 3 222222222 666 1 0 0 77777 55 3 77777777777 1 9999 2222222 5 5 5 99 5 5 1 8888888 2 8 4 8 6
lowQualScore : . . . . .... . . ... .... .. . . . . ......... ... . . . ..... .. . ........... . .... ....... . . . .. . . . ....... . . . . .
lowQualScore : 1 7 2 1 5555 9 9 777 7777 00 7 1 6 1 333333333 222 3 2 4 33333 00 6 44444444444 3 4444 0000000 0 7 7 77 7 7 4 2222222 5 0 6 0 7
consensus : TTCTTCT-TCCGTATA-A----GGTACTTC-ACCACTATA---AGTG----TATACTCGTACCGGCATGTGTAGTGCAAAGACGACTGTGTATTTATAAATGAATNTTCTAAAAGAATTTT-GTACAGTGCAGTTAAAA---------GTTT--AAAAACCAATCCG--C--TTGAC--TATGGTCTG-ATCGGGATGGACTGGATC---C---G---CTTGAAACTGTCTATGGTTGGAGCAGTGACAG----CTACC-----TAA-TGGTAAAGCGTTCCATATCCTGATACCG-TCT-GGG-AA-AA-CGATTTCTGGTAAACGAGTGTCCTCGCATACGGCACCAAGAAAGTGTTGTTATTGCCTCTTGGA----GATATGGTCGGCACCAGAAGATTGGACGGAATATCAATCAACTGATATACAACCCT-GAACATCATGATGACTTTGG-CCTGGGCTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTT
Reference ( family-534 ) : TTCTTCT-TCCGTATA-A----GGTACTTC-ACCACTATA---AGTG----TATACTCGTACCGGCATGTGTAGTGCAAAGACGACTGTGTATTTATAAATGAATNTTCTAAAAGAATTTT-GTACAGTGCAGTTAAAA---------GTTT--AAAAACCAATCCG--C--TTGAC--TATGGTCTG-ATCGGGATGGACTGGATC---C---G---CTTGAAACTGTCTATGGTTGGAGCAGTGACAG----CTACC-----TAA-TGGTAAAGCGTTCCATATCCTGATACCG-TCT-GGG-AA-AA-CGATTTCTGGTAAACGAGTGTCCTCGCATACGGCACCAAGAAAGTGTTGTTATTGCCTCTTGGA----GATATGGTCGGCACCAGATGATCGGACGGAATATCAATCAACTGATATACAACCCT-GAACATCATGATGACTTTGG-CCTGGGCTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTT
gi|1 : AA---------GTTA--AAATACTG-TACA--T--CTAAC--TTGGGTCTG-ATGGAGATAGACTGGATCTTTC---A---CTTGAAATTATCTATTTATGGAGATGTGATAG----CT
gi|1 : atGTTCTTGCATACGACACCAAGAA-GTGTTGTTATTACCTCTT----------------GGCACCAGGAGATTGGATGGATTATCATTCAACTGATACAAAACTCTAAAACACCATGtcgattctatctgggaggtcttcagttcttgcatacgacaccaagaagtgttgttattacctcttggcaccaggagattggatggattatcattcaactgatacaaaactctaaaacaccatggcgcacaataaattgattatttatgtgttaatttatgttcattttgaacatcatgatgactttgttcctgggctttacgttcctggaatgttggcctctggagttgatccaatatgttgaagtcactgctggttgtcctgcagtctgggaataccgtgggagcagctctccgttgagccatctccaacttgtttatgaatgttttct
gi|1 : ataagttaaaatactgtacatctaacttgggtctgatggagatagactggatctttcacttgaaattatctatttatggagatgtgatagcttcgattctatctgggaggtcttcaT-GAACATCATGATGACTTTGTTCCTGGGCTTTACGTTCCTGGAATGTTGGCCTCTGGAGTTgcgcacaataaattgattatttatgtgttaatttatgttcattttgaacatcatgatgactttgttcctgggctttacgttcctggaatgttggcctctggagttgatccaatatgttgaagtcactgctggttgtcctgcagtctgggaataccgtgggagcagctctccgttgagccatctccaacttgtttatgaatgttttct
gi|10 : ataagttaaaatactgtacatctaacttgggtctgatggagatagactggatctttcacttgaaattatctatttatggagatgtgatagcttcgattctatctgggaggtcttcagttcttgcatacgacaccaagaagtgttgttattacctcttggcaccaggagattggatggattatcattcaactgatacaaaactctaaaacaccatggcgcacaataaattgattatttatgtgttaatttatgttcatttTGTGTAGTGAATAGATGACTGT------ATAAACAAATTTTCTAAAATGATTTT--TACAGTACAGTTAAAA---------GTTT--AAAA-CCAA--------------------GTGTGCAT-------GACTG---T---C---A---CTTGAAACTGTCCACGGATGGAGCAGTGACAG----CTA-C-----TAA-TGGTAATGCGTTCCAAATCCTGATACGA-TCTAGGA-AA-AA-CAATTTATGGTAAACAAGTGACATTACATATTGCACCAAAAAAGTGTTGTTATTGCTTCCTGGA----GATATGGTCAGCACCACAAGATgatccaatatgttgaagtcactgctggttgtcctgcagtctgggaataccgtgggagcagctctccgttgagccatctccaacttgtttatgaatgttttct
gi|12 : aagctataccaattctTTCTTTTATCCGTATA-ATTAAGGTACTTC-ACCACTATG---AGTG----TATACTCCTACCGGCATGTGAAGTGCAAAG-----------TTTATTAATGAATGTTCTAAAAAAAAATT-GTACTGTACAGTTAAAA---------TTAA--AAAAAACAATCCG--C--TTGAC--TATGGTCTG-ATCGGGTTCGAACGGATC---TGTAG---CTTAAAACTGt
gi|13 : TTCTTCT-TCCATATA-A----TGTGCCTC-ACCACTATA---AGTGCCTGTATACTTGTACAGGCATGTGTAATGCAAAGACGACTGT--ATTTATAAATGAATATTCTAAAAGAACTTT-GTAAAGTGCAGTTAAAG---------GTTT---AAAACAAGTCTG--A--TGGACTATATGGTTTG-ATCGGAATGAACTGGA
gi|14 : tcCTTTT-TCCTT-TA-A----TCTAATTCCACCACTATATAAATTG----TCTACTAATACCGACATGTGTAATGCAAAAACAAC--TGTATTT---AATCAATTTTCT--AAGAAGTTT-G
gi|15 : cctgaCTTCT-TTCGTGTA-A----GGTACTTC-ACCACTAAT---TGTG----TAAACTCACACCATCATATGCAGTGCAAAAATGACTGT----------ATAAACATT--------ATT----TACACTACAGTTAAAA---------GTTA--AAAATCCTGTGCG--T--TTGAC--TAGGGTTTG-ATTGGGATGGATTGaaaacctgaaaaaatgaacaagaaatacttggtttggatctgtcacttgaaaccaacta
gi|16 : TATAAATTAATTTTCTAAAAGT-TTTT-GTACAGTGAAGTTAAAATAATACAGTGCAT--ATAAAATAATGTG--CACTTGAC--TGTGGTCTG-ATCATGATAGACTGGTTCTGTC---G---CTTGAAACTGTCTATGGATTGAGCAGTAACAG----CTA-C-----TAA-Tcctgtcac
gi|17 : ctgTTCTTCT-TCTGTATA-A----GGTACTTC-ACCATAATG---AGTG----TATACTCATACTGGCATGTGTGGTGCAAAGACGACTGTGCATTTATAA---------C----AGAA-TTT-GTACAGTGCAGTTAAAA---------GTTT--AAAAACAAATCTG--T--TTAA
gi|18 : tTTCCTCT-TCCATGTA-A----GGTACTTC-ACCACTA-----AGTG----TATACTCGTACCGCCATGTGTAGTGCAAAGACGACTGTGTATTTATTAATGGATGTTCTAAAATAATTTA-ATACAGTGAAGTTAGAA---------GTTgagttgctgaagactgg
gi|19 : tTTTTTCT-TCCATGTA-A----TGTACTTC-ACCACTATA---AGTG----TATACTCATACCGGCGTGa
gi|2 : aatattttcttcttttTTCTTCT-TCCATATA-A----GATACTTC-ACCACTAGA---AGTG----TATACTCGTACCGGCATGTGTAGTACAAAGATGACTGTGTATTTACACATGAATGTTCTAGAAGAATCTT-GTACAGTGCATTTAAAA---------GTTT--AAAAACCAATCTG--C--CTGAC--TATGGTCTG-ATCGGGGTGGACT---TT---T---G---CTTGAAACTGTCTATGGTTGGAGCAGTGACAG----CTACTTCCGGTAG-TGGTAAAGTGTTCCATATCCTGATACTG-TCT-GG---------GATGTTTGGTAAACGAGTGTCCCCGCATACAGCATTAAGAAAGTGTT-T--TTGCCTCTTG------GATATGGT------------------CGGAATATCAATTAACGGATATACAACCCT-GAACATCATGATGACAGTGG-CCTGGGCTCTGCGCTTCTGGAGTTTTGGCCATTGGAGTTaatgatattg
gi|20 : TTCTTTT-TCCGTTAA-A----GGTACTTC-ACCACTACA---AGTG----TGTACTCGTACCGGCATATGTATTGCAAAGA
gi|21 : -ACCACTTTA---TGTG----TATACCCGTACCGGCATGTGTAG
gi|22 : TA---AGTG----TATACTCGTAACGGCATGTGTAGTGCAA
gi|3 : TCTTCT-TCCTTTTA-T----ATTACTTC-ACCACTA-----GGTG----TATACTCCTACCGGCAT-----------AGACTCGTGTGTATTTATTAATGAATTTTCTAAAAGAGTTTTTGTACAGTGCAGTTAAAA---------GTTT--AATA--TAATATGTAC--TTGAC--TATGGTCTG-ATTGAGATGAACCGAATC---T---GTCACTTAAAACCATCTGTGGTTGGAGCAGTTACAG----CTAC------TAA-TAGTAAAACATTCCATATCCTGATACCG-TAT-GGA-AAGAA-CGATTTCTGGTAAACAAATGTCCTCCTATACAGCACCA----------GTTATTGCCTCTTGGA----GATCTGGTCGACACCAGGAGAGTGAATGGAATGCCAATCAACTGATACACAACCCT-TAACATCATAATGACTTTGG-CCTGGGCTGTG
gi|4 : TCGTCA-TCCGCATA-A----GGTACTTC-ACAACTGTA---AGTG----TATACTCGTACCGACATGTGTAGTGTAAAGACGGTTGTGTATTTATAAATGAATCTTTTAAAACAAGTGT-GTATAGTGCAGTTGAAA---------GTT---AAAAACACGTCCG--C--TTGAC--TATAGTCTG-ATCGGGATGGACTGGATC-------------------------TGGTTGGGGCAATGACAG----CT-CC-----TAA-CG-TAAAGCGTTCCATATCCTGATAACA-TCA-GAG-AA-AA-TGTTTTCTGGTAAACGAATGTCCTCGCATACGGCACCAAGAAAGTGTTGTTGTTGCCTCTTGGAGATCGATATGGTCGGCACCAGATGATCGGACGGAATACCTATCAACTGATATA
gi|5 : TTGG-CCTGGGCTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTT
gi|6 : GTATATGACTATAGCAGTGGCAG----TTAC------TGC-TGGTAAGGCGTTCCATATTCTGATAACA-AAT-GGG-AA-AAACGATTTCTGGTAAGCAAGTGTCCACGCATACGGTACCAAGAAAGTGTTGTTATTGCCTCTTTGA----GATATGGTCGGCACCAGATGATTGGACGGAATATCGATAAACTGATATACAACCCT-GAAAATCATGATGGCTTTGG-CCTGGGCTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTTgatccattatgttggatacactgctggttgtccggtagtaagataacaccatctgagcaaccctccgttgaaccatctccatttgccgtgcacgggttccagataacgctagcacattctgtgagtgccctgataaaggtttcgtagcatatagggctttgatcttacgtgaacactggtggatattgcgccgcaggaaatcaaggatggagtttgccttcttcgtcacgtgtttgatgtggtggttccagttccggctcctatggatatttacccccaagatacttggctgagtctgctgcatcta
gi|7 : TTCTTCT-TCCGTATG-A----GGTACTTC-ACCACTATA---AGTG----TATACTCGTACCGGCATGTGTAGTACAAAGACGACTGTGTATTTACACATGAATGTTCTAAAAGAATTTT-GTACAGCTC-----------------GTTT--AAAAACCAATCCG--C--TTGAC--TACGGTCTG-ATCTGAATGGACTGGATC---TGTAG---CTTGAAACTGTCTATGGTTGGAGCAGTGACAGAGCTCTA-C-----TAC-TGGTAAA--GTTCCATATCCTTATCCCGTTTT-GGA-AA-AA-TGATTTCTGGCAAATGTGTGTCCTCACATATGGCACCAAGAAAGTGTTGTTATgatccattatgttggatacactgctggttgtccggtagtaagataacaccatctgagcaaccctccgttgaaccatctccatt
gi|8 : TGG-CCTGGATTCTGCGCTCCTGAAGTTTTGGCCATTGGAGTT
gi|9 : TCTTCT-TCCTTATATA----GGTACTGG-GGAACTTTA---AGTG----TATACTCGTACCGGCATGTGTAGTACAAAGACAACTGT--ATTTACACATGAATGTTCTAAAAGAATTTT-GAACAGTGCATTTAAAA---------GTTTAAAAAAAACAATCCA--C--TTGGC--TATGGTCTG-ATCGAAATGGACTGGATC---T---GTACCTTGAAACTGTCAATGGTTTGAGCAGTGGCAG----CTAC-------AACTGGTAAAGCGTTCCATATCCTGATACCA-TCT-GGGAAA-AA-CGATTTCTGAT-AATGAGTGTCCTgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatagggcttaagtctcacgtggacacagatggatgttgcgccgtaggaaagcaagggtggaatttgcctacttcgtcgtctggttgata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CGGATTACGCTAGCATATTCTGTGAGTGGTCTGATTAAGGGTTTATAGCATAGAACTGTGGTTTCGGGGTGTCACTAGTAAATGTTGCGCCGCAGATAGGCAAGGGTGAAATTAGACTTCTTCGGCATCTGTTTGTTGTGATGATTCCATTTCAGATTGCTATGGTTGTTAACCCCTAAATACTTGGCTGAGTCTGCTGCATCTA