lowQualScore : 11 1111111 1111111 11111 111 1 11 1 1111111111 1 1111111 1111111111 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888
lowQualScore : 2 2 55 88 333 2 3333333 4444 8888 4444444 333 44 22 22222 000 2 3 1 33 5 0 2222222222 66666 1 444 444 7777777 4 999 2 2 2 2 2 77777 2 8888 1111111111 555 0 555555 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 4444 1 5 55 1 1
lowQualScore : . . .. .. ... . ....... .... .... ....... ... .. .. ..... ... . . . .. . . .......... ..... . ... ... ....... . ... . . . . . ..... . .... .......... ... . ...... ................................................................................................................................... .... . . .. . .
lowQualScore : 0 0 11 88 555 0 7777777 0000 9999 3333333 333 55 66 22222 111 2 0 3 22 6 3 4444444444 11111 8 444 444 4444444 2 444 5 5 9 5 5 00000 5 5555 6666666666 888 7 777777 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5555 9 7 44 9 9
consensus : GCGTTTCACA-AA-A-NAA--CTTACGACAA---A-AATC-G-TCGTAAACG----TAAA-CC-AACAA-N-T-A-T---TCAT--AATA--T----NTT-A-A-ATNTTCATC-CAAATGAACCCAA-ANT-T-G-CTCAAAT-C--ATGCAG---AA---AA----TGATAT---ATTT-TC-TGAAA-ATA-CAATC--A--TT-T---TAAA---T---G--TCG--NTCA--A---AATTTGAACA---CAC---A--A---AGG-----NGA---T---AT------------C-GT---C--A--A--A-------T-T-G-------AC--TT-------------AC--G-T--------------C------GATTTT----TATCGT-AAG-TTN-T-TT-TGTGAAACGCAGCCCA
Reference ( gi|4 ) : GCGTTTCACA-AA-A-CAA--CTTACGACAA---A-ATTC-G-TCGTAAACG----TAAA-CC-AACAA-A-T-A-T---TCAT--AATA--T----GTT-A-A-ATTTTCATC-GAAATGAAGCCAA-AAT-T-G-CTCAAAT-C--ATGCTG---AA---AG----TTACAT---ATTT-TC-TGAAA-ATA-CAATC--A--TT-T---CAAA---T---G--TCA--TTCA--A---AATTTGAACA---CAC---A--A---AGG-----TGA---T---AT------------C-GT---C--A--A--A-------T-T-G-------AC--TT-------------AC--G-T--------------C------GATTTT----TATCGT-AAG-TTA-T-TT-TGTGAAACGCAGCCCA
gi|11 : GCGTTTCACA-AA-G-TAA--CTTACGATAA---A-AATC-G-ACGTAA--G----TCAATTT-GACGATA-T-C-T---CCGT--TGTG--T----GTTCA-A-ATTTT
gi|5 : gtaaacgtaaaccaacaaattttcataatatgttaaattttcatccaaatgaagccaaaatggctcatatcatgcttaaagttacatattttccgaaaattcGCGTTTCACA-AA-G-AAA--CTTACGACAA---A-AATC-G-TCGTAAACG----TAAA-CA-AACAA-T-T-A-T---TCAT--AATA--G----TTT-T-A-ATTTTCCTC-TAAATGAAGCCAA-ATT-A-G-CTCAAAT-G--ATGCAG---AG---AGTTTATTAT-T---ATTT-TC-TGAAA-ATA-CAATC--A--TT-T---TAAA---T---G--TCG--ATCA--A---AATTTGAACA---CAA---A--A---CGG-----AGA---A---TT------------T-GT---C--A--A--T-------T-T--------------------------------G-T--------------C------GATTTT----TATTGT-AAG-TTA-T-AA-TGTGAAACGCAGCCCagcccagatcc
gi|5 : cgtGCGTTTCACA-TT-A-TAA--CTTACAATAA---A-AATC-G-------AC------AAA-TT-GACAA-A-TTC-T---CCGT--TTTG--T----GTTCA-A-ATTTTGATC-GACAT-----------T-T-A----AAAT-G--AT--TG-------------------T---ATTT-TC-AGAAA-ATAATAATA--AACTC-T---C------T---GCATCA--TTTG--AGCTAATTTGGCTT---CATTT-A--G---AGGAAAATTAAAACT---AT------------T-AT---G--A--ATAA-------T-T-GTTTGTTTACGTTT-------------AC--G-A--------------C------GATTTT----TGTCGT-AAG-TTT-C-TT-TGTGAAACGCAt
gi|2 : cgGCGTTTCACA-AA-A-AAA--CTTACGACAA---A-AATT-G-ACGTAAACG----TAAA-CC-AACAA-T-T-A-T---TAAC--AACA--T----TTT-T-A-ATATTCATC-CAAATGAACCCAA-AGT-TGG-GTCAAA--C--ATGCAG---AG---AA----TGATAT---ATTT-CC-TGGAA-ATA-CAATC--A--GT-T---TAAA---T---G--TCA--ATCA--A---AATTCAAACATTCCCT---G--A---AAA-----TAA---T-------------------GT---C--A--A--A-------T-T-G-------AC--TT-------------AC--G-G--------------C------GATATT----TATCAT-AAG-TTA-T-TT-TGTGAAACGCAGTCCagccct
gi|2 : tGCGTTTCACA-AA-A-TAA--CTTATGATAA---A-TATC-G-CCGTAA--G----TCAA-TTTGACATTA-T-T-T---TCAGGGAATG--T-----TT-G-A-ATTTTGATT-GACAT-----TTA-AAC-T-G-ATTGTAT-T---TCCAG---GA---AA----T-ATATC--ATTC-TC-TGCAT-GTT-TGACCCAA--CT-T---TGGG---T------TCA--TTTG--G---A---TGAATA---T-T---A--A---AAA-----TG---------T------------T-GT---T--A--ATAA-------T-T-GTTGGTTTACGTTT-------------AC--G-T--------------C------AATTTT----TGTCGT-AAG-TTT-T-TT-TGTGAAACGCAtg
gi|6 : GCGTTTCACA-AA-A-AAAT-CTTAAGACAA---A-AATT-G-ACGTAAACG----TTAA-CC-AACAA-T-T-A-C---TCAT--AATA--T----TTT-TTA-ATATTTATC-CAAATTAACCCAA-TAT-T-GGCTCAAAT-C--ATGCAG---AA---AA----TGATAT---ATTT-TC-TGGAA-ATA-CAATC--A--TT-T---TCAA---C---G--TCA--TTCA--A---AATTTAAACATACCAC---G--A---AAA-----CAA---T-------------------GT---C--A--A--A-------T-T-G-------AC--------------------------------------------------T----TATCGT-TAG-TTA-T-TT-TGTGAAACGCACCCCagtcctg
gi|6 : ctGCGTTTCACA-AA-A-TAA--CTAACGATAAGTCA-ATTT-G-ACAT---TG----T---------------T---T---TCGT--GGTA--T----GTTTA-A-ATTTT------GAATGACGTTGA-AAA-T-G-ATTGTAT-T---TCCAG---AA---AA----T-ATATC--ATTT-TC-TG--------CA-TG--A--TT-TGAGCCAA---T---A--TTGGGTT--------AATTTGGATA---AAT---ATTA---AAA------AA---T---AT------------T-AT---G--AGTA--A-------T-T-GTTGGTTAACGTTT-------------AC--G-T--------------C------AATTTT----TGTCTT-AAGATTT-T-TT-TGTGAAACGCAGt
gi|3 : GTGTTTCA-A-AA-A-TAA--CTTCCAACAA---ATATTT---CCGTAAAAG----CAAA-CC-AAGAA-T-T-G-T---TCGT--AATA--T----TTT-A-ATATTT--ATC-AAAATTAACCCAA-GGT-T-GACTCAAGT-C--ATGCAG---AA---AA----TAAAAT---ATTT-TCGCGAAG-A-A-CGGCC--A--TT-T---TAAA---T---G--TGG--ATCA--C---AATTTGATCA---TAC---A--ATAAAGG-----C---------AT------------T-GT---C--A--A--A-------T-T-G-------AT--TT-------------AC--G-A--------------C------GATTTT----GATTTTGAAG-TTC-T-TT-TGTAAAACA-AGCCCAacccct
gi|10 : gtGCGTTTCACACAA-A-AAAT-CTTACGACAT---A-AATC-G-ACTTAAACG----TAAA-AC-AACAC-T-T-A-T---TAAT--AACA--T----TTT-C-A-ATATTCATC-TCAATGAACCCAA-AGT-TGG-CTCTAAT-C--GTGCAG---AG---AA----TGATAT---ATTT-TC-TGGAA-ATA-CAATC--A--TTAT---CAAA---A---G--TTG--TT
gi|13 : agaacagggctGCGTTTCACA-AA-AATGT--CTTAAGACAA---A-AATC-A-TTGTAAACG----TAAA-CC-AACAA-T-T-AGT---TTA---AATA--T----TTT-A-A-AATGT-ATC-CAAATTAATCCAA-AGT-T-GACTTAAAT-C--GTGCAG---TA---AA----TGACAT---TTTTATC-CG-AA-ATA-CAACC--A--TT-T---TAAA---C---G--TCA--ATTA--A---ACTTTGAA-A---TAC---A--A---ttgtgaaacccagcccagaacgc
gi|1 : GCATTTCATA-AA-A-CAA--CTTACGATAA---A-AATCAG-TCGTAAACATATTTAAA-GC-AAGAA-A-C-T-T---TCAT--ACTA--T----TTT-T-C-ATGGTCATC-CACATGAATTTAA-GAT-T-G-T----AT-T---TTCAG---AA---A-------ACATACCATTT-TA-TGAAATATT-CAATC--------T---GAGA---TTGGG--TTA--ATCT--A---GATTT--ATA---TTT---A--A------------GA---T---AT------------TAATGAACAAA--A--A-------T-T-A-------CT--TT-------------AC--G-TTTACAAC-------C------TACTTT----TAACGT-AAGTTTT-T-TT-TGTGAAATGcga
gi|23 : atGCGTTTCACA-AA-A-TAA--CTTACaa
gi|12 : GCATTTCACA-AATA-AAA--CTTACAATAA---A-AATA-GGTTGTAAACG----TAAA-GT-AGGTA-G-C-G-T---TCAT--GATA--T----TTT-A-A-ATATTAATC-CAGATTAACTCAA-CCTAT-G--TTAAATGC--ATG-TG---AACCGAG----TGCGAC---ATTT----TGCAC-TTA-TGACC--C--TT-T---TAAAGATT---G---CA--TTCA--agcccagatcat
gi|19 : atGCATTTCACA-AA-A-AGA--CTTGCAATAA---A-AATA-GATTGTAAGCT----TAA-----GGTAA-G-T-A-TCGGTCAT--AACA--T----TTT-tggtattttaaata
gi|17 : ttGCATTTCACA-AA-A---A--C--ACGATGA---A-AT-A-G-ACTTAAACG----TAAA-GT-AACAA-ACT-A-----TCAT--AATATTT----GTC-A-A-
gi|18 : gtgaatgccaGCATTTCAC---------------ACAAAAA---A-ATTA-G-TCGTGAACG----TAAA-GT-ATGAA-A-C-A-T---TCAT--AAAA--T----ATaa
gi|1 : catatggataaccatgatCATTTCACA-AA-A-AAAA-CTTACGTTAA---A-AGTA-GGTTGTAAACG----TAAA-GT-AATTT-T-T-G-T---TCATT-AATA--T----CTT-A-A-ATATAAATC-TAGATTAACCCAA-----T---CTCAGAT-TGAATATTTCATAA---AA----TGGTAT---GTTT-TC-TGAAA-ATA-CAATC--------T---TAAA---T------TCA--TGTG--G---A---TGACCA---TG----A--A---AAA-----TAG---T---ATGAAAGTTTCTTGC-TT---T--A--A--A-------TAT-G--------T--TT-------------AC--G-A--------------CT-----GATTTT----TATCGT-AAG-TTG-T-TT-TATGAAATGCAaac
gi|9 : atGTTTCAAA-AA-A-AAAAACTTACGACAA---A-AATA-G-TCGTAAACT----TAAA-CC-AACAC-T-T-T-T---TCAT--AATA--T----TTT-T-A-ATATT-ATA-CAAATGAAGCCAA-TTT-C-G-CTAAAAA-T--ATAC-----AA---AG----TTACAT---ATTT-TC-AGAAA-ATA-CAATT--A--TT-T---TAAA---T---G--CCG--ATAA--A---AATTTGAACA---CAC---A--A---CGG-----AGA---a
gi|7 : aatgaTTTCATA-AA-G-AAA--GTTACTCCAA---T-ATTT-G-TTGTAAACA----TAG-------------T---T---TCAT--AATG--TTTTTGTT-A------TTCATCTAAAATTAA-CCAGCAAT-T-G-CTTTAAT-C--ATGCGG---AA---AT----GTATAT---A-TT-TC-TGAAA-ATG-ATATA--A--TT-T---TAAA-----------CA--TTTATTT---AATTTAAACA---TAC---A--------G-----TGA---GCAAAT------------C-AT---G--A--A--A-------T-G-A-------AT--TT-------------AT--G-G--------------C------AAATTTAATGTAT-AT-ACG-TTT-G-TT-TATGAATGGCACCCCaaggtattttgtgaaacgcagcactg
gi|16 : cataTCTTATA-AA-A--AA----TACGATAA---A-ATTCAG-TTTTAAACG----TAAA-GT-AATAA-A-C-A-T---ACAT--AATA--T----ATT-t
gi|8 : tcatgcaaatgactatgaAA---A-A----G-TCGTAAACT----TAAA-CC-AACAA-T-T-A-T---TCAT--AATA--T----CTT-T-A-ATTTT-ATC-CAAATGCACCCGA-GTT-G-G-CTCAAAT-C--ATGCAG---AA---AG----TAAATT---TTTT-TC-TGAAA-ATA-CAATT--A--TT-T---TAAA---T---G--TCG--ATTA--A---GATTTGAACA---CAC---A--A---CGG-----AAA---A---AT------------G-GT---C--A--A--A-------T-T-G-------AC--TT-------------AC--G-T--------------C------GATTT----------------TTA-T-TT-TGTGAAACGCAGTCC
gi|11 : caaaaaGTAAACG----TAAA-CC-AACAA-A-T-T-T---TCAT--AATA--T----GTT-A-A-ATTTTCATC-CAAATGAAGCCAA-AAT-G-G-CTCATAT-C--ATGCTT---AA---AG----TTACAT---ATTT-TC-CGAAA--------------------------------------A--TTCA--A---AATTTGAACA---CAC---A--A---CGG-----AGA---T---AT------------C-GT---C--A--A--A-------T-T-G-------AC--TT-------------AC--G-T--------------C------GATTTT----TATCGT-AAG-TTA-C-TT-TGTGAAACGCAGCCCAtgga
gi|15 : TCA--A---AATTTGAATA---TAT---A--A---CAA-----AGA---A---AT------------T-GT---C--A--A--G-------T-CCG-------AC--TTGCAACAATTTTAAAC--G-TAAGTAGACTTAAAAC------AATTTT----AATCGT-AAG-TTA-C-TT-TGTGAAAAGTAACCCAgatcc
gi|13 : aa---AATTTGGATA---CATTTTA--A---A---------A---T---AT---------------T---T--A--A--ACTAATTGT-T-G-------GT--TT-------------AC--G-T--------------TTACAATGATTTT----TGTCTT-AAG-ACATT-TT-TGTGAAACGCggtctct
gi|20 : --A--A-------T-T-G-------AC--TT-------------AATGG-TA-------------T------GATTTT----TAT--T-AAG-TTA-T-TT-TGTGAAATGCTGCCCAaatccaaagttgacttaaatcgtgcagtaaatgacatttttatccgaaatacaaccattttaaacgtcaattaaactttgaaatacaacga
gi|19 : C--TT-------------AC--AAT--------------C------TATTTT----TATTGC-AAG-TCT-T-TT-TGTGAAATGCAga
gi|10 : t--TT-------------AA--G-T--------------C------GATTTA----TGTCGT-AAGATTT-T-TTGTGTGAAACGCAGCCCcttaaggtaagtatcggtcataacatttt
gi|12 : agaacaATTTT----TATTGT-AAG-TTT-TATT-TGTGAAATGCAacgtaaaacaacacttattaataacattttcaatattcatctcaatgaacccaaagttggctctaatcgtgcagagaatgatatattttctggaaatacaatcattatcaaaagttgttttgtgaaacccagcccagaacgc
gi|10 : aT----TATCAA-AAG-TTG-T-TT-TGTGAAACCCAGCCCAaggttgtaaacgtaaagtaggtagcgttcatgatattttaaatattaatccagattaactcaacctatgttaaatgcatgtgaaccgagtgcgacattttgcacttatgacccttttaaagattgcattcatggtattttaaata
gi|23 : agaacagggctgcgtttcacacaaaaaatcttacgacataaatcgacttaaacgtaaaacaacacttattaataacattttcaatattcatctcaatgaacccaaagttggctctaatcgtgcagagaatgatatattttctggaaatacaatcaGT-AAG-TTA-T-TT-TGTGAAACGCAGCCCAgaacgc
gi|9 : -AAG-GTA-T-TT-TGTGAAACGCAGCgatcat
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): GTAAGTATTGTTCATAATATTTTAAATATTAATCCAAATCAAGAAATCAGATAGATAAGTTCTTGTCCAAATGACAACAAACTTAATGGAAAAATTCAGGAAATGGTATGATTTCTGAAAATACAATCTTAAATTCATGTGGCTG
Unaligned ( gi|21 ): ATGTGAGTGACCATGAAAAATAGTATAAAAGTTCCTTACGTTTACGACTGAT
Unaligned ( gi|22 ): TTCACGAATAAACTTACGATAAAAATAGGTTTTAAAAGCAAAGTAA
Alignments
lowQualScore : 11 1111111111111 1111111111111 11111111 1
lowQualScore : 5 2 3 44 1 77 7 1 2 1 2 333 55 1 99 1 4 2 444 0 4444444444444 888 8 4444444444444 00000000 1 555 6666 0 2 2 2 1 6666 33 555 44 3 1 1 4 1 55 6 44 99 3 6666 1 2 1
lowQualScore : . . . .. . .. . . . . . ... .. . .. . . . ... . ............. ... . ............. ........ . ... .... . . . . . .... .. ... .. . . . . . .. . .. .. . .... . . .
lowQualScore : 3 7 6 33 4 44 5 8 4 0 2 999 33 0 44 0 9 5 444 1 9999999999999 777 6 6666666666666 44444444 7 000 1111 7 9 9 9 4 1111 88 444 22 3 2 0 4 0 00 7 66 00 3 1111 2 5 9
consensus : GCGTTTCACA-AA-AAAA--CTTACGACAAAAATC-G-TCGTAAACGTAAACCAAC-AATTA-T---TCAT--AATATTTTN-AATATTCATCCAAA-T---GAACCCAA-A----------NT-T-G-CTCAAAT--C----------ATG--------CAGAA---A----ATGATATAT-TT-TC-TGAAAATACAATCATTTTAA----ATGTCGAT---CA--AAATTTGAACA-TACAACGGAGANATCG--TCAAAT-TGACTTAC--GN-C-GATTTT----TATCGT-AAGTTATTTTGTGAAACGCAGCCCA
Reference ( family-5292 ) : GCGTTTCACA-AA-ANAA--CTTACGACAAAAATC-G-TCGTAAACGTAAACCAAC-AANTA-T---TCAT--AATATNTTA-AATNTTCATCCAAA-T---GAACCCAA-A----------NT-T-G-CTCAAAT--C----------ATG--------CAGAA---A----ATGATATAT-TT-TC-TGAAAATACAATCATTTTAA----ATGTCGNT---CA--AAATTTGAACA-CACAAAGGNGATATCG--TCAAAT-TGACTTAC--GT-C-GATTTT----TATCGT-AAGTTNTTTTGTGAAACGCAGCCCA
gi|1 : CATTTCACA-AA-AAAAA-CTTACGTTAAAAGTA-GGTTGTAAACGTAAAGTAAT-TTTTG-T---TCATT-AATATCTTA-AATATAAATCTAGA-T---TAACCCAA-T----------CT-CAG-ATTGAAT--A----------TTT--------CATAA---A----ATGGTATGT-TT-TC-TGAAAATACAATC---TTAAATTCATGTGGATGACCATGAAA----AATAGTATGAAAGTT-TCTTGCTTTAAATATG-TTTAC--GA-CTGATTTT----TATCGT-AAGTTGTTTTATGAAATGCA
gi|10 : atGCGTTTCACACAA-AAAAT-CTTACGACATAAATC-G-ACTTAAACGTAAAACAAC-ACTTA-T---TAAT--AACATTTTC-AATATTCATCTCAA-T---GAACCCAA-A----------GT-T-GGCTCTAAT--C----------GTG--------CAGAG---A----ATGATATAT-TT-TC-TGGAAATACAATCATT--------------AT---CA--AAAGTTGa
gi|10 : agaacagggctT----TATCAA-AAGTTGTTTTGTGAAACCCAGCCCAttttgtgaaacccagcccagaacgc
gi|11 : agaacagggctgcgtttcacacaaaaaatcttacgacataaatcgacttaaacgtaaaacaacacttattaataacattttcaatattcatctcaatgaacccaaagttggctctaatcgtgcagagaatgatatattttctggaaatacaatcaGTAAACGTAAACCAAC-AAATT-T---TCAT--AATATGTTA-AATTTTCATCCAAA-T---GAAGCCAA-A----------AT-G-G-CTCATAT--C----------ATG--------CTTAA---A----GTTACATAT-TT-TC-CGAAAAT------------------------T---CA--AAATTTGAACA-CACAACGGAGATATCG--TCAAAT-TGACTTAC--GT-C-GATTTT----TATCGT-AAGTTACTTTGTGAAACGCAGCCCAgaacgc
gi|12 : GCATTTCACA-AATAAAA--CTTACAATAAAAATA-GGTTGTAAACGTAAAGTAGG-TAGCG-T---TCAT--GATATTTTA-AATATTAATCCAGA-T---TAACTCAA-C----------CTAT-G--TTAAATG-C----------ATG--------T-GAACCGA----GTGCGACAT-TT----TGCACTTATGACCCTTTTAA----Agatcc
gi|13 : atGCGTTTCACA-AA-AATGT-CTTAAGACAAAAATC-A-TTGTAAACGTAAACCAAC-AATTAGT---TTA---AATATTTTA-AA-ATGTATCCAAA-T---TAATCCAA-A----------GT-T-GACTTAAAT--C----------GTG--------CAGTA---A----ATGACATTT-TTATC-CG-AAATACAACCATTTTAA----ACGTCAAT---TA--AACTTTGAA-A-TACAAgattgcattcatggtattttaaata
gi|14 : ATTG-T---TCAT--AATATTTTA-AATATTAATCCAAA-TCAAGAAATCAG-ATAGATAAGTTCT-T-G-TCCAAATGACAACAAACTTAATGGAAAAATTCAGGA---A----ATGGTATGA-TT-TC-TGAAAATACAATC---TTAA----ATcga
gi|15 : gtaagtT---CA--AAATTTGAATA-TATAACAAAGAAATTG--TCAAGTCCGACTTGC--AA-C-AATTTT----AAACGT-AAGTtcatgtggctg
gi|15 : aaCG--T-AAGT-AGACTTAA--AA-C-AATTTT----AATCGT-AAGTTACTTTGTGAAAAGTAACCCAagacttaaaacaattttaatcgtaagttactttgtgaaaagtaacccaggtctct
gi|16 : aatcaaaatttgaatatataacaaagaaattgtcaagtccgacttgcaacaattttaaaTCTTATA-AA-AAA-----TACGATAAAATTCAG-TTTTAAACGTAAAGTAAT-AAACA-T---ACAT--AATATATTT-CATAGTCATTTGCA-T---GAggtctct
gi|17 : GCATTTCACA-AA-A--A--C--ACGATGAAA-TA-G-ACTTAAACGTAAAGTAACAAACTA-----TCAT--AATATTT
gi|18 : gtgaatgccattgacGCATTTCACACAA-AAAA--ATTA------------G-TCGTGAACGTAAAGTATG-AAACA-T---TCATAAAATATATC---ATGGTTATCCATA-T---Gaa
gi|19 : GCATTTCACA-AA-AAGA--CTTGCAATAAAAATA-GATTGTAAGCTTAA---GGT-AAGTA-TCGGTCAT--AACATTTTaac
gi|2 : ttGCGTTTCACA-AA-AAAA--CTTACGACAAAAATT-G-ACGTAAACGTAAACCAAC-AATTA-T---TAAC--AACATTTTT-AATATTCATCCAAA-T---GAACCCAA-A----------GT-TGG-GTCAAA---C----------ATG--------CAGAG---A----ATGATATAT-TT-CC-TGGAAATACAATCAGTTTAA----ATGTCAAT---CA--AAATTCAAACA-TTCCCTGAAAATAATG--TCAAAT-TGACTTAC--GG-C-GATATT----TATCAT-AAGTTATTTTGTGAAACGCAGTCC
gi|20 : tAAT-TGACTTAATGGTAT-GATTTT----TAT--T-AAGTTATTTTGTGAAATGCTGCCCAtg
gi|22 : ATTTT----TATCGT-AAGTTTATTCGTGAAga
gi|23 : GT-AAGTTATTTTGTGAAACGCAGCCCAaggttttaaaagcaaagtaa
gi|3 : GTGTTTCA-A-AA-ATAA--CTTCCAACAAATATT-T-CCGTAAAAGCAAACCAAG-AATTG-T---TCGT--AATATTTTA-A-TATTTATCAAAA-T---TAACCCAA-G----------GT-T-GACTCAAGT--C----------ATG--------CAGAA---A----ATAAAATAT-TT-TCGCGAAGA-ACGGCCATTTTAA----ATGTGGAT---CA--CAATTTGATCA-TACAATAAAGGCATTG--TCAAAT-TGATTTAC--GA-C-GATTTT----GATTTTGAAGTTCTTTTGTAAAACA-AGCCCAgatcat
gi|4 : gtGCGTTTCACA-AA-ACAA--CTTACGACAAAATTC-G-TCGTAAACGTAAACCAAC-AAATA-T---TCAT--AATATGTTA-AATTTTCATCGAAA-T---GAAGCCAA-A----------AT-T-G-CTCAAAT--C----------ATG--------CTGAA---A----GTTACATAT-TT-TC-TGAAAATACAATCATTTCAA----ATGTCATT---CA--AAATTTGAACA-CACAAAGGTGATATCG--TCAAAT-TGACTTAC--GT-C-GATTTT----TATCGT-AAGTTATTTTGTGAAACGCAGCCCA
gi|5 : GCGTTTCACA-AA-GAAA--CTTACGACAAAAATC-G-TCGTAAACGTAAACAAAC-AATTA-T---TCAT--AATAGTTTT-AATTTTCCTCTAAA-T---GAAGCCAA-A----------TT-A-G-CTCAAAT--G----------ATG--------CAGAG---AGTTTATTAT-TAT-TT-TC-TGAAAATACAATCATTTTAA----ATGTCGAT---CA--AAATTTGAACA-CAAAACGGAGAATTTG--TCAATT-T---------GT-C-GATTTT----TATTGT-AAGTTATAATGTGAAACGCAGCCC
gi|6 : cgtGCGTTTCACA-AA-AAAAT-CTTAAGACAAAAATT-G-ACGTAAACGTTAACCAAC-AATTA-C---TCAT--AATATTTTTTAATATTTATCCAAA-T---TAACCCAATA----------TT-G-G-CTCAAAT--C----------ATG--------CAGAA---A----ATGATATAT-TT-TC-TGGAAATACAATCATTTTCA----ACGTCATT---CA--AAATTTAAACA-TACCACGAAAACAATG--TCAAAT-TGAC----------------T----TATCGT-TAGTTATTTTGTGAAACGCACCCCt
gi|7 : ctTTTCATA-AA-GAAA--GTTACTCCAATATTT-G-TTGTAAACATA----------GT--T---TCAT--AATGTTTTT-GTTATTCATCTAAAAT---TAACCAGC-A----------AT-T-G-CTTTAAT--C----------ATG--------C-GGA---A----ATG-TATATATT-TC-TGAAAATGATATAATTTTAA----ACATTTAT---T---TAATTTAAACA-TACAGTGAGCAAATCA--TGAAAT-GAATTTAT--GG-C-AAATTTAATGTAT-AT-ACGTTTGTTTATGAATGGCACCCCt
gi|8 : cataAAAAA---G-TCGTAAACTTAAACCAAC-AATTA-T---TCAT--AATATCTTT-AATTTT-ATCCAAA-T---GCACCCGA-G----------TT-G-G-CTCAAAT--C----------ATG--------CAGAA---A----GTAAATTTT-TT-TC-TGAAAATACAATTATTTTAA----ATGTCGAT---TA--AGATTTGAACA-CACAACGGAAAAATGG--TCAAAT-TGACTTAC--GT-C-GATTTT----TA-----------TTTTGTGAAACGCAGTCCt
gi|9 : caaaaGTTTCAAA-AA-AAAAAACTTACGACAAAAATA-G-TCGTAAACTTAAACCAAC-ACTTT-T---TCAT--AATATTTTT-AATATT-ATACAAA-T---GAAGCCAA-T----------TT-C-G-CTAAAA--------------ATA--------TACAA---A----GTTACATAT-TT-TC-AGAAAATACAATTATTTTAA----ATGCCGAT---AA--AAATTTGAACA-CACAACGGAGAtgga
gi|9 : aatga-AAGGTATTTTGTGAAACGCAGCaaggtattttgtgaaacgcagcactg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATGTGAGTGACCATGAAAAATAGTATAAAAGTTCCTTACGTTTACGACTGAT
Alignments
lowQualScore : 1 1111111111111 1111111111111 11111111
lowQualScore : 2 2 33 1 0 66 8 0 2 33 2 2 55 444 1 2 444 0 4444444444444 888 8 4444444444444 00000000 1 555 6666 0 2 2 2 1 6666 1 3 1 55 55 6 44 2 77 77777 2 2
lowQualScore : . . .. . . .. . . . .. . . .. ... . . ... . ............. ... . ............. ........ . ... .... . . . . . .... . . . .. .. . .. . .. ..... . .
lowQualScore : 9 9 99 4 5 99 0 9 4 77 4 4 99 444 8 7 777 1 9999999999999 777 6 6666666666666 44444444 7 000 1111 7 9 9 9 4 1111 6 1 0 00 00 7 33 2 99 11111 1 7
consensus : GCGTTTCACA-AA-A--AAA-CTTACGACAAAAATC-G-TCGTAAACGTAAACCAACAA-TTA-TTCAT-AATATTT-TN-AAT---ATTCATCCAAA-T---GAACCCAA-A----------NT-T-G-CTCAAAT--C----------ATG--------CAGAA---A----ATGATATAT-TT-TC-TGAAAATACAATCATTTTAA----ATGTCGATCAAAATTTG-AACATACAACGGAGANATC--G--TCAAAT-TGACTTA-CGNC--GATTTT----TATCGT-AAGTTATTTTGTGAAACGCAGCCCA
Reference ( family-5292 ) : GCGTTTCACA-AA-A--AAA-CTTACGACAAAAATC-G-TCGTAAACGTAAACCAACAA-TTA-TTCAT-AATATTT-TN-AAT---ATTCATCCAAA-T---GAACCCAA-A----------NT-T-G-CTCAAAT--C----------ATG--------CAGAA---A----ATGATATAT-TT-TC-TGAAAATACAATCATTTTAA----ATGTCGATCAAAATTTG-AACATACAACGGAGANATC--G--TCAAAT-TGACTTA-CGNC--GATTTT----TATCGT-AAGTTATTTTGTGAAACGCAGCCCA
gi|1 : CATTTCACA-AA-A--AAAACTTACGTTAAAAGTA-GGTTGTAAACGTAAAGTAATTT-TTG-TTCATTAATATCT-TA-AAT---ATAAATCTAGA-T---TAACCCAA-T----------CT-CAG-ATTGAAT--A----------TTT--------CATAA---A----ATGGTATGT-TT-TC-TGAAAATACAATC---TTAAATTCATGTGGATGACCA--TGAAAAATAGTATGAAAGTTTCTTGCTTTAAATATG-TTTA-CGACT-GATTTT----TATCGT-AAGTTGTTTTATGAAATGCA
gi|10 : atGCGTTTCACACAA-A--AAATCTTACGACATAAATC-G-ACTTAAACGTAAAACAACAC-TTA-TTAAT-AACATTT-TC-AAT---ATTCATCTCAA-T---GAACCCAA-A----------GT-T-GGCTCTAAT--C----------GTG--------CAGAG---A----ATGATATAT-TT-TC-TGGAAATACAATCATT--------------ATCAAAAGTTG-a
gi|10 : agaacagggctT----TATCAA-AAGTTGTTTTGTGAAACCCAGCCCAttttgtgaaacccagcccagaacgc
gi|11 : agaacagggctgcgtttcacacaaaaaatcttacgacataaatcgacttaaacgtaaaacaacacttattaataacattttcaatattcatctcaatgaacccaaagttggctctaatcgtgcagagaatgatatattttctggaaatacaatcaGTAAACGTAAACCAACAA-ATT-TTCAT-AATATGT-TA-AAT---TTTCATCCAAA-T---GAAGCCAA-A----------AT-G-G-CTCATAT--C----------ATG--------CTTAA---A----GTTACATAT-TT-TC-CGAAAAT------------------------TCAAAATTTG-AACACACAACGGAGATATC--G--TCAAAT-TGACTTA-CGTC--GATTTT----TATCGT-AAGTTACTTTGTGAAACGCAGCCCAgaacgc
gi|12 : GCATTTCACA-AATA--AAA-CTTACAATAAAAATA-GGTTGTAAACGTAAAGTAGGTA-GCG-TTCAT-GATATTT-TA-AAT---ATTAATCCAGA-T---TAACTCAA-C----------CTAT-G--TTAAATG-C----------ATG--------T-GAACCGA----GTGCGACAT-TT----TGCACTTATGACCCTTTTAA----Agatcc
gi|13 : atGCGTTTCACA-AA-A--ATGTCTTAAGACAAAAATC-A-TTGTAAACGTAAACCAACAA-TTAGTTTA--AATATTT-TA-AA----ATGTATCCAAA-T---TAATCCAA-A----------GT-T-GACTTAAAT--C----------GTG--------CAGTA---A----ATGACATTT-TTATC-CG-AAATACAACCATTTTAA----ACGTCAATTAAACTTTG-AA-ATACAACGgattgcattcatggtattttaaata
gi|14 : A-TTG-TTCAT-AATATTT-TA-AAT---ATTAATCCAAA-TCAAGAAATCAG-ATAGATAAGTTCT-T-G-TCCAAATGACAACAAACTTAATGGAAAAATTCAGGA---A----ATGGTATGA-TT-TC-TGAAAATACAATC---TTAA----ATa
gi|15 : gtaagtATCAAAATTTG-AATATATAACAAAGAAATT--G--TCAAGTCCGACTTG-CAAC--AATTTT----AAACGT-AAGTtcatgtggctg
gi|15 : aC--G--T-AAGT-AGACTTA-AAAC--AATTTT----AATCGT-AAGTTACTTTGTGAAAAGTAACCCAagacttaaaacaattttaatcgtaagttactttgtgaaaagtaacccaggtctct
gi|16 : aatcaaaatttgaatatataacaaagaaattgtcaagtccgacttgcaacaattttaaaTCTTATA-AA-A--AA----TACGATAAAATTCAG-TTTTAAACGTAAAGTAATAA-ACA-TACAT-AATATAT-TT-CAT---AGTCATTTGCA-T---GAggtctct
gi|17 : GCATTTCACA-AA-A--A-----CACGATGAAA-TA-G-ACTTAAACGTAAAGTAACAAACTA-T-CAT-AATATTTGTC-AATGGCATTCA
gi|19 : gGCATTTCACA-AA-A--AGA-CTTGCAATAAAAATA-GATTGTAAGCTTAAGGTAAGTA-TCG-GTCAT-AACATTT-Taa
gi|2 : ttGCGTTTCACA-AA-A--AAA-CTTACGACAAAAATT-G-ACGTAAACGTAAACCAACAA-TTA-TTAAC-AACATTT-TT-AAT---ATTCATCCAAA-T---GAACCCAA-A----------GT-TGG-GTCAAA---C----------ATG--------CAGAG---A----ATGATATAT-TT-CC-TGGAAATACAATCAGTTTAA----ATGTCAATCAAAATTCA-AACATTCCCTGAAAATAAT--G--TCAAAT-TGACTTA-CGGC--GATATT----TATCAT-AAGTTATTTTGTGAAACGCAGTCC
gi|20 : tAAT-TGACTTAATGGTATGATTTT----TAT--T-AAGTTATTTTGTGAAATGCTGCCCAtg
gi|23 : GT-AAGTTATTTTGTGAAACGCAGCCCAga
gi|3 : GTGTTTCA-A-AA-A--TAA-CTTCCAACAAATATT-T-CCGTAAAAGCAAACCAAGAA-TTG-TTCGT-AATATTT-T--AAT---ATTTATCAAAA-T---TAACCCAA-G----------GT-T-GACTCAAGT--C----------ATG--------CAGAA---A----ATAAAATAT-TT-TCGCGAAGA-ACGGCCATTTTAA----ATGTGGATCACAATTTG-ATCATACAATAAAGGCATT--G--TCAAAT-TGATTTA-CGAC--GATTTT----GATTTTGAAGTTCTTTTGTAAAACA-AGCCCAgatcat
gi|4 : gtGCGTTTCACA-AA-A--CAA-CTTACGACAAAATTC-G-TCGTAAACGTAAACCAACAA-ATA-TTCAT-AATATGT-TA-AAT---TTTCATCGAAA-T---GAAGCCAA-A----------AT-T-G-CTCAAAT--C----------ATG--------CTGAA---A----GTTACATAT-TT-TC-TGAAAATACAATCATTTCAA----ATGTCATTCAAAATTTG-AACACACAAAGGTGATATC--G--TCAAAT-TGACTTA-CGTC--GATTTT----TATCGT-AAGTTATTTTGTGAAACGCAGCCCA
gi|5 : GCGTTTCACA-AA-G--AAA-CTTACGACAAAAATC-G-TCGTAAACGTAAACAAACAA-TTA-TTCAT-AATAGTT-TT-AAT---TTTCCTCTAAA-T---GAAGCCAA-A----------TT-A-G-CTCAAAT--G----------ATG--------CAGAG---AGTTTATTAT-TAT-TT-TC-TGAAAATACAATCATTTTAA----ATGTCGATCAAAATTTG-AACACAAAACGGAGAATTT--G--TCAATT-T--------GTC--GATTTT----TATTGT-AAGTTATAATGTGAAACGCAGCCC
gi|6 : cgtGCGTTTCACA-AA-A--AAATCTTAAGACAAAAATT-G-ACGTAAACGTTAACCAACAA-TTA-CTCAT-AATATTT-TTTAAT---ATTTATCCAAA-T---TAACCCAATA----------TT-G-G-CTCAAAT--C----------ATG--------CAGAA---A----ATGATATAT-TT-TC-TGGAAATACAATCATTTTCA----ACGTCATTCAAAATTTA-AACATACCACGAAAACAAT--G--TCAAAT-TGACTTA-------------------TCGT-TAGTTATTTTGTGAAACGCACCCCt
gi|7 : ctTTTCATA-AA-G--AAA-GTTACTCCAATATTT-G-TTGTAAACATAG----------T--TTCAT-AATGTTT-TT-GTT---ATTCATCTAAAAT---TAACCAGC-A----------AT-T-G-CTTTAAT--C----------ATG--------C-GGA---A----ATG-TATATATT-TC-TGAAAATGATATAATTTTAA----ACATTTATT-TAATTTA-AACATACAGTGAGCAAATC--A--TGAAAT-GAATTTA-TGGC--AAATTTAATGTAT-AT-ACGTTTGTTTATGAATGGCACCCCt
gi|8 : cataAAAAA---G-TCGTAAACTTAAACCAACAA-TTA-TTCAT-AATATCT-TT-AAT----TTTATCCAAA-T---GCACCCGA-G----------TT-G-G-CTCAAAT--C----------ATG--------CAGAA---A----GTAAATTTT-TT-TC-TGAAAATACAATTATTTTAA----ATGTCGATTAAGATTTG-AACACACAACGGAAAAATG--G--TCAAAT-TGACTTA-CGTC--GATTT---------------TTATTTTGTGAAACGCAGTCCt
gi|9 : caaaaGTTTCAAA-AA-AAAAAA-CTTACGACAAAAATA-G-TCGTAAACTTAAACCAACAC-TTT-TTCAT-AATATTT-TT-AAT---ATT-ATACAAA-T---GAAGCCAA-T----------TT-C-G-CTAAAA--------------ATA--------TACAA---A----GTTACATAT-TT-TC-AGAAAATACAATTATTTTAA----ATGCCGATAAAAATTTG-AACACACAACGGAGAAAtgga
gi|9 : aatga-AAGGTATTTTGTGAAACGCAGCggtattttgtgaaacgcagcactg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CATATGGATAACCATGATATATTTTATGAATGTTTCATACTTTACGTTCACGACTAATTTTTTTGTGTGAAATGCAAC
Unaligned ( gi|21 ): ATGTGAGTGACCATGAAAAATAGTATAAAAGTTCCTTACGTTTACGACTGAT
Unaligned ( gi|22 ): TTCACGAATAAACTTACGATAAAAATAGGTTTTAAAAGCAAAGTAA
Alignments
lowQualScore : 1 1111111111111 1111111111111 11111111
lowQualScore : 2 2 33 1 0 66 8 0 2 33 2 2 55 444 1 2 444 0 4444444444444 888 8 4444444444444 00000000 1 555 6666 0 2 2 2 1 6666 1 3 1 55 55 6 44 2 77 77777 2 2
lowQualScore : . . .. . . .. . . . .. . . .. ... . . ... . ............. ... . ............. ........ . ... .... . . . . . .... . . . .. .. . .. . .. ..... . .
lowQualScore : 9 9 99 4 5 99 0 9 4 77 4 4 99 444 8 7 777 1 9999999999999 777 6 6666666666666 44444444 7 000 1111 7 9 9 9 4 1111 6 1 0 00 00 7 33 2 99 11111 1 7
consensus : GCGTTTCACA-AA-A--AAA-CTTACGACAAAAATC-G-TCGTAAACGTAAACCAACAA-TTA-TTCAT-AATATTT-TN-AAT---ATTCATCCAAA-T---GAACCCAA-A----------NT-T-G-CTCAAAT--C----------ATG--------CAGAA---A----ATGATATAT-TT-TC-TGAAAATACAATCATTTTAA----ATGTCGATCAAAATTTG-AACATACAACGGAGANATC--G--TCAAAT-TGACTTA-CGNC--GATTTT----TATCGT-AAGTTATTTTGTGAAACGCAGCCCA
Reference ( family-5292 ) : GCGTTTCACA-AA-A--AAA-CTTACGACAAAAATC-G-TCGTAAACGTAAACCAACAA-TTA-TTCAT-AATATTT-TN-AAT---ATTCATCCAAA-T---GAACCCAA-A----------NT-T-G-CTCAAAT--C----------ATG--------CAGAA---A----ATGATATAT-TT-TC-TGAAAATACAATCATTTTAA----ATGTCGATCAAAATTTG-AACATACAACGGAGANATC--G--TCAAAT-TGACTTA-CGNC--GATTTT----TATCGT-AAGTTATTTTGTGAAACGCAGCCCA
gi|1 : CATTTCACA-AA-A--AAAACTTACGTTAAAAGTA-GGTTGTAAACGTAAAGTAATTT-TTG-TTCATTAATATCT-TA-AAT---ATAAATCTAGA-T---TAACCCAA-T----------CT-CAG-ATTGAAT--A----------TTT--------CATAA---A----ATGGTATGT-TT-TC-TGAAAATACAATC---TTAAATTCATGTGGATGACCA--TGAAAAATAGTATGAAAGTTTCTTGCTTTAAATATG-TTTA-CGACT-GATTTT----TATCGT-AAGTTGTTTTATGAAATGCA
gi|10 : atGCGTTTCACACAA-A--AAATCTTACGACATAAATC-G-ACTTAAACGTAAAACAACAC-TTA-TTAAT-AACATTT-TC-AAT---ATTCATCTCAA-T---GAACCCAA-A----------GT-T-GGCTCTAAT--C----------GTG--------CAGAG---A----ATGATATAT-TT-TC-TGGAAATACAATCATT--------------ATCAAAAGTTG-a
gi|10 : agaacagggctT----TATCAA-AAGTTGTTTTGTGAAACCCAGCCCAttttgtgaaacccagcccagaacgc
gi|11 : agaacagggctgcgtttcacacaaaaaatcttacgacataaatcgacttaaacgtaaaacaacacttattaataacattttcaatattcatctcaatgaacccaaagttggctctaatcgtgcagagaatgatatattttctggaaatacaatcaGTAAACGTAAACCAACAA-ATT-TTCAT-AATATGT-TA-AAT---TTTCATCCAAA-T---GAAGCCAA-A----------AT-G-G-CTCATAT--C----------ATG--------CTTAA---A----GTTACATAT-TT-TC-CGAAAAT------------------------TCAAAATTTG-AACACACAACGGAGATATC--G--TCAAAT-TGACTTA-CGTC--GATTTT----TATCGT-AAGTTACTTTGTGAAACGCAGCCCAgaacgc
gi|12 : GCATTTCACA-AATA--AAA-CTTACAATAAAAATA-GGTTGTAAACGTAAAGTAGGTA-GCG-TTCAT-GATATTT-TA-AAT---ATTAATCCAGA-T---TAACTCAA-C----------CTAT-G--TTAAATG-C----------ATG--------T-GAACCGA----GTGCGACAT-TT----TGCACTTATGACCCTTTTAA----Agatcc
gi|13 : atGCGTTTCACA-AA-A--ATGTCTTAAGACAAAAATC-A-TTGTAAACGTAAACCAACAA-TTAGTTTA--AATATTT-TA-AA----ATGTATCCAAA-T---TAATCCAA-A----------GT-T-GACTTAAAT--C----------GTG--------CAGTA---A----ATGACATTT-TTATC-CG-AAATACAACCATTTTAA----ACGTCAATTAAACTTTG-AA-ATACAACGgattgcattcatggtattttaaata
gi|14 : A-TTG-TTCAT-AATATTT-TA-AAT---ATTAATCCAAA-TCAAGAAATCAG-ATAGATAAGTTCT-T-G-TCCAAATGACAACAAACTTAATGGAAAAATTCAGGA---A----ATGGTATGA-TT-TC-TGAAAATACAATC---TTAA----ATa
gi|15 : gtaagtATCAAAATTTG-AATATATAACAAAGAAATT--G--TCAAGTCCGACTTG-CAAC--AATTTT----AAACGT-AAGTtcatgtggctg
gi|15 : aC--G--T-AAGT-AGACTTA-AAAC--AATTTT----AATCGT-AAGTTACTTTGTGAAAAGTAACCCAagacttaaaacaattttaatcgtaagttactttgtgaaaagtaacccaggtctct
gi|16 : aatcaaaatttgaatatataacaaagaaattgtcaagtccgacttgcaacaattttaaaTCTTATA-AA-A--AA----TACGATAAAATTCAG-TTTTAAACGTAAAGTAATAA-ACA-TACAT-AATATAT-TT-CAT---AGTCATTTGCA-T---GAggtctct
gi|17 : GCATTTCACA-AA-A--A-----CACGATGAAA-TA-G-ACTTAAACGTAAAGTAACAAACTA-T-CAT-AATATTTGTC-AATGGCATTCA
gi|19 : gGCATTTCACA-AA-A--AGA-CTTGCAATAAAAATA-GATTGTAAGCTTAAGGTAAGTA-TCG-GTCAT-AACATTT-Taa
gi|2 : ttGCGTTTCACA-AA-A--AAA-CTTACGACAAAAATT-G-ACGTAAACGTAAACCAACAA-TTA-TTAAC-AACATTT-TT-AAT---ATTCATCCAAA-T---GAACCCAA-A----------GT-TGG-GTCAAA---C----------ATG--------CAGAG---A----ATGATATAT-TT-CC-TGGAAATACAATCAGTTTAA----ATGTCAATCAAAATTCA-AACATTCCCTGAAAATAAT--G--TCAAAT-TGACTTA-CGGC--GATATT----TATCAT-AAGTTATTTTGTGAAACGCAGTCC
gi|20 : tAAT-TGACTTAATGGTATGATTTT----TAT--T-AAGTTATTTTGTGAAATGCTGCCCAtg
gi|23 : GT-AAGTTATTTTGTGAAACGCAGCCCAga
gi|3 : GTGTTTCA-A-AA-A--TAA-CTTCCAACAAATATT-T-CCGTAAAAGCAAACCAAGAA-TTG-TTCGT-AATATTT-T--AAT---ATTTATCAAAA-T---TAACCCAA-G----------GT-T-GACTCAAGT--C----------ATG--------CAGAA---A----ATAAAATAT-TT-TCGCGAAGA-ACGGCCATTTTAA----ATGTGGATCACAATTTG-ATCATACAATAAAGGCATT--G--TCAAAT-TGATTTA-CGAC--GATTTT----GATTTTGAAGTTCTTTTGTAAAACA-AGCCCAgatcat
gi|4 : gtGCGTTTCACA-AA-A--CAA-CTTACGACAAAATTC-G-TCGTAAACGTAAACCAACAA-ATA-TTCAT-AATATGT-TA-AAT---TTTCATCGAAA-T---GAAGCCAA-A----------AT-T-G-CTCAAAT--C----------ATG--------CTGAA---A----GTTACATAT-TT-TC-TGAAAATACAATCATTTCAA----ATGTCATTCAAAATTTG-AACACACAAAGGTGATATC--G--TCAAAT-TGACTTA-CGTC--GATTTT----TATCGT-AAGTTATTTTGTGAAACGCAGCCCA
gi|5 : GCGTTTCACA-AA-G--AAA-CTTACGACAAAAATC-G-TCGTAAACGTAAACAAACAA-TTA-TTCAT-AATAGTT-TT-AAT---TTTCCTCTAAA-T---GAAGCCAA-A----------TT-A-G-CTCAAAT--G----------ATG--------CAGAG---AGTTTATTAT-TAT-TT-TC-TGAAAATACAATCATTTTAA----ATGTCGATCAAAATTTG-AACACAAAACGGAGAATTT--G--TCAATT-T--------GTC--GATTTT----TATTGT-AAGTTATAATGTGAAACGCAGCCC
gi|6 : cgtGCGTTTCACA-AA-A--AAATCTTAAGACAAAAATT-G-ACGTAAACGTTAACCAACAA-TTA-CTCAT-AATATTT-TTTAAT---ATTTATCCAAA-T---TAACCCAATA----------TT-G-G-CTCAAAT--C----------ATG--------CAGAA---A----ATGATATAT-TT-TC-TGGAAATACAATCATTTTCA----ACGTCATTCAAAATTTA-AACATACCACGAAAACAAT--G--TCAAAT-TGACTTA-------------------TCGT-TAGTTATTTTGTGAAACGCACCCCt
gi|7 : ctTTTCATA-AA-G--AAA-GTTACTCCAATATTT-G-TTGTAAACATAG----------T--TTCAT-AATGTTT-TT-GTT---ATTCATCTAAAAT---TAACCAGC-A----------AT-T-G-CTTTAAT--C----------ATG--------C-GGA---A----ATG-TATATATT-TC-TGAAAATGATATAATTTTAA----ACATTTATT-TAATTTA-AACATACAGTGAGCAAATC--A--TGAAAT-GAATTTA-TGGC--AAATTTAATGTAT-AT-ACGTTTGTTTATGAATGGCACCCCt
gi|8 : cataAAAAA---G-TCGTAAACTTAAACCAACAA-TTA-TTCAT-AATATCT-TT-AAT----TTTATCCAAA-T---GCACCCGA-G----------TT-G-G-CTCAAAT--C----------ATG--------CAGAA---A----GTAAATTTT-TT-TC-TGAAAATACAATTATTTTAA----ATGTCGATTAAGATTTG-AACACACAACGGAAAAATG--G--TCAAAT-TGACTTA-CGTC--GATTT---------------TTATTTTGTGAAACGCAGTCCt
gi|9 : caaaaGTTTCAAA-AA-AAAAAA-CTTACGACAAAAATA-G-TCGTAAACTTAAACCAACAC-TTT-TTCAT-AATATTT-TT-AAT---ATT-ATACAAA-T---GAAGCCAA-T----------TT-C-G-CTAAAA--------------ATA--------TACAA---A----GTTACATAT-TT-TC-AGAAAATACAATTATTTTAA----ATGCCGATAAAAATTTG-AACACACAACGGAGAAAtgga
gi|9 : aatga-AAGGTATTTTGTGAAACGCAGCggtattttgtgaaacgcagcactg
blockSeqs : C T AA T CA G A AG . G TT GGC C A CAA ATAGATAAGTTC AT G GACAACAAACTTA GAAAAATT A CCG GTTT A A G A . A . T . . C AT T AT AATGT C G
blockSeqs : . . . T C A . A . . C . C . . TAT TG A GC . T . . . . . C . A . A . . . C A . T C .
blockSeqs : . . . T A . . T . . A . A . . AG T A C . A . . . . . A . G . T . . . C A . T C .
blockSeqs : . . . . C . . G . . A . T . . AA G . C . A . . . . . A . A . C . . . A G . A C .
blockSeqs : . . . . A . . G . . A . A . . CC T . C . A . . . . . A . G . T . . . C G . A C .
blockSeqs : . . . . A . . A . . A . C . . AG T . C . A . . . . . A . A . A . . . C A . T T .
blockSeqs : . . . . T . . A . . T . C . . AG T . C . T . . . . . A . T . C . . . C T . T C .
blockSeqs : . . . . T . . G . . C . C . . GG T . C . A . . . . . A . G . A . . . T T . G T .
blockSeqs : . . . . C . . A . . T . T . . AA A . G . A . . . . . A . G . A . . . C G . T C .
blockSeqs : . . . . C . . G . . A . C . . AT G . C . A . . . . . A . . . A . . . . T . T . .
blockSeqs : . . . . T . . A . . T . C . . AA T . C . A . . . . . A . . . . . . . . . .
blockSeqs : . . . . T . . A . . T . T . . GT G . C . . . . . . . . . . . . .
blockSeqs : . . . . A . . A . . T . C . . TT C . . . . . . . . . . . .
blockSeqs : . . . A . . T . T . . .
blockSeqs : . T . . . . .
blockSeqs : . . . .
blockSeqCons : T** **** ** ** **
originalCons : GCGTTTCACA-AA-A--AAA-CTTACGACAAAAATC-G-TCGTAAACGTAAACCAACAA-TTA-TTCAT-AATATTT-TN-AAT---ATTCATCCAAA-T---GAACCCAA-A----------NT-T-G-CTCAAAT--C----------ATG--------CAGAA---A----ATGATATAT-TT-TC-TGAAAATACAATCATTTTAA----ATGTCGATCAAAATTTG-AACATACAACGGAGANATC--G--TCAAAT-TGACTTA-CGNC--GATTTT----TATCGT-AAGTTATTTTGTGAAACGCAGCCCA
finalCons : GCGTTTCACA-AA-A--AAA-CTTACGACAAAAATC-G-TCGTAAACGTAAACCAACAA-TTA-TTCAT-AATATTT-TN-AAT---ATTCATCCAAA-T---GAACCCAA-A----------NTT--G-CTCAAAT--C----------ATG--------CAGAA---A----ATGATATAT-TT-TC-TGAAAATACAATCATTTTAA----ATGTCGATCAAAATTTG-AACATACAACGGAGANATC--G--TCAAAT-TGACTTA-CGNC--GATTTT----TATCGT-AAGTTATTTTGTGAAACGCAGCCCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CATATGGATAACCATGATATATTTTATGAATGTTTCATACTTTACGTTCACGACTAATTTTTTTGTGTGAAATGCAAC
Unaligned ( gi|21 ): ATGTGAGTGACCATGAAAAATAGTATAAAAGTTCCTTACGTTTACGACTGAT
Unaligned ( gi|22 ): TTCACGAATAAACTTACGATAAAAATAGGTTTTAAAAGCAAAGTAA
Alignments
lowQualScore : 1 1111111111111 1111111111111 11111111
lowQualScore : 2 2 33 1 0 66 8 0 2 33 2 2 55 444 1 2 444 0 4444444444444 888 8 4444444444444 00000000 1 555 6666 0 2 2 2 1 6666 1 3 1 55 55 6 44 2 77 77777 2 2
lowQualScore : . . .. . . .. . . . .. . . .. ... . . ... . ............. ... . ............. ........ . ... .... . . . . . .... . . . .. .. . .. . .. ..... . .
lowQualScore : 9 9 99 4 5 99 0 9 4 77 4 4 99 444 8 7 777 1 9999999999999 777 6 6666666666666 44444444 7 000 1111 7 9 9 9 4 1111 6 1 0 00 00 7 33 2 99 11111 1 7
consensus : GCGTTTCACA-AA-A--AAA-CTTACGACAAAAATC-G-TCGTAAACGTAAACCAACAA-TTA-TTCAT-AATATTT-TN-AAT---ATTCATCCAAA-T---GAACCCAA-A----------NT-T-G-CTCAAAT--C----------ATG--------CAGAA---A----ATGATATAT-TT-TC-TGAAAATACAATCATTTTAA----ATGTCGATCAAAATTTG-AACATACAACGGAGANATC--G--TCAAAT-TGACTTA-CGNC--GATTTT----TATCGT-AAGTTATTTTGTGAAACGCAGCCCA
Reference ( family-5292 ) : GCGTTTCACA-AA-A--AAA-CTTACGACAAAAATC-G-TCGTAAACGTAAACCAACAA-TTA-TTCAT-AATATTT-TN-AAT---ATTCATCCAAA-T---GAACCCAA-A----------NT-T-G-CTCAAAT--C----------ATG--------CAGAA---A----ATGATATAT-TT-TC-TGAAAATACAATCATTTTAA----ATGTCGATCAAAATTTG-AACATACAACGGAGANATC--G--TCAAAT-TGACTTA-CGNC--GATTTT----TATCGT-AAGTTATTTTGTGAAACGCAGCCCA
gi|1 : CATTTCACA-AA-A--AAAACTTACGTTAAAAGTA-GGTTGTAAACGTAAAGTAATTT-TTG-TTCATTAATATCT-TA-AAT---ATAAATCTAGA-T---TAACCCAA-T----------CT-CAG-ATTGAAT--A----------TTT--------CATAA---A----ATGGTATGT-TT-TC-TGAAAATACAATC---TTAAATTCATGTGGATGACCA--TGAAAAATAGTATGAAAGTTTCTTGCTTTAAATATG-TTTA-CGACT-GATTTT----TATCGT-AAGTTGTTTTATGAAATGCA
gi|10 : atGCGTTTCACACAA-A--AAATCTTACGACATAAATC-G-ACTTAAACGTAAAACAACAC-TTA-TTAAT-AACATTT-TC-AAT---ATTCATCTCAA-T---GAACCCAA-A----------GT-T-GGCTCTAAT--C----------GTG--------CAGAG---A----ATGATATAT-TT-TC-TGGAAATACAATCATT--------------ATCAAAAGTTG-a
gi|10 : agaacagggctT----TATCAA-AAGTTGTTTTGTGAAACCCAGCCCAttttgtgaaacccagcccagaacgc
gi|11 : agaacagggctgcgtttcacacaaaaaatcttacgacataaatcgacttaaacgtaaaacaacacttattaataacattttcaatattcatctcaatgaacccaaagttggctctaatcgtgcagagaatgatatattttctggaaatacaatcaGTAAACGTAAACCAACAA-ATT-TTCAT-AATATGT-TA-AAT---TTTCATCCAAA-T---GAAGCCAA-A----------AT-G-G-CTCATAT--C----------ATG--------CTTAA---A----GTTACATAT-TT-TC-CGAAAAT------------------------TCAAAATTTG-AACACACAACGGAGATATC--G--TCAAAT-TGACTTA-CGTC--GATTTT----TATCGT-AAGTTACTTTGTGAAACGCAGCCCAgaacgc
gi|12 : GCATTTCACA-AATA--AAA-CTTACAATAAAAATA-GGTTGTAAACGTAAAGTAGGTA-GCG-TTCAT-GATATTT-TA-AAT---ATTAATCCAGA-T---TAACTCAA-C----------CTAT-G--TTAAATG-C----------ATG--------T-GAACCGA----GTGCGACAT-TT----TGCACTTATGACCCTTTTAA----Agatcc
gi|13 : atGCGTTTCACA-AA-A--ATGTCTTAAGACAAAAATC-A-TTGTAAACGTAAACCAACAA-TTAGTTTA--AATATTT-TA-AA----ATGTATCCAAA-T---TAATCCAA-A----------GT-T-GACTTAAAT--C----------GTG--------CAGTA---A----ATGACATTT-TTATC-CG-AAATACAACCATTTTAA----ACGTCAATTAAACTTTG-AA-ATACAACGgattgcattcatggtattttaaata
gi|14 : A-TTG-TTCAT-AATATTT-TA-AAT---ATTAATCCAAA-TCAAGAAATCAG-ATAGATAAGTTCT-T-G-TCCAAATGACAACAAACTTAATGGAAAAATTCAGGA---A----ATGGTATGA-TT-TC-TGAAAATACAATC---TTAA----ATa
gi|15 : gtaagtATCAAAATTTG-AATATATAACAAAGAAATT--G--TCAAGTCCGACTTG-CAAC--AATTTT----AAACGT-AAGTtcatgtggctg
gi|15 : aC--G--T-AAGT-AGACTTA-AAAC--AATTTT----AATCGT-AAGTTACTTTGTGAAAAGTAACCCAagacttaaaacaattttaatcgtaagttactttgtgaaaagtaacccaggtctct
gi|16 : aatcaaaatttgaatatataacaaagaaattgtcaagtccgacttgcaacaattttaaaTCTTATA-AA-A--AA----TACGATAAAATTCAG-TTTTAAACGTAAAGTAATAA-ACA-TACAT-AATATAT-TT-CAT---AGTCATTTGCA-T---GAggtctct
gi|17 : GCATTTCACA-AA-A--A-----CACGATGAAA-TA-G-ACTTAAACGTAAAGTAACAAACTA-T-CAT-AATATTTGTC-AATGGCATTCA
gi|19 : gGCATTTCACA-AA-A--AGA-CTTGCAATAAAAATA-GATTGTAAGCTTAAGGTAAGTA-TCG-GTCAT-AACATTT-Taa
gi|2 : ttGCGTTTCACA-AA-A--AAA-CTTACGACAAAAATT-G-ACGTAAACGTAAACCAACAA-TTA-TTAAC-AACATTT-TT-AAT---ATTCATCCAAA-T---GAACCCAA-A----------GT-TGG-GTCAAA---C----------ATG--------CAGAG---A----ATGATATAT-TT-CC-TGGAAATACAATCAGTTTAA----ATGTCAATCAAAATTCA-AACATTCCCTGAAAATAAT--G--TCAAAT-TGACTTA-CGGC--GATATT----TATCAT-AAGTTATTTTGTGAAACGCAGTCC
gi|20 : tAAT-TGACTTAATGGTATGATTTT----TAT--T-AAGTTATTTTGTGAAATGCTGCCCAtg
gi|23 : GT-AAGTTATTTTGTGAAACGCAGCCCAga
gi|3 : GTGTTTCA-A-AA-A--TAA-CTTCCAACAAATATT-T-CCGTAAAAGCAAACCAAGAA-TTG-TTCGT-AATATTT-T--AAT---ATTTATCAAAA-T---TAACCCAA-G----------GT-T-GACTCAAGT--C----------ATG--------CAGAA---A----ATAAAATAT-TT-TCGCGAAGA-ACGGCCATTTTAA----ATGTGGATCACAATTTG-ATCATACAATAAAGGCATT--G--TCAAAT-TGATTTA-CGAC--GATTTT----GATTTTGAAGTTCTTTTGTAAAACA-AGCCCAgatcat
gi|4 : gtGCGTTTCACA-AA-A--CAA-CTTACGACAAAATTC-G-TCGTAAACGTAAACCAACAA-ATA-TTCAT-AATATGT-TA-AAT---TTTCATCGAAA-T---GAAGCCAA-A----------AT-T-G-CTCAAAT--C----------ATG--------CTGAA---A----GTTACATAT-TT-TC-TGAAAATACAATCATTTCAA----ATGTCATTCAAAATTTG-AACACACAAAGGTGATATC--G--TCAAAT-TGACTTA-CGTC--GATTTT----TATCGT-AAGTTATTTTGTGAAACGCAGCCCA
gi|5 : GCGTTTCACA-AA-G--AAA-CTTACGACAAAAATC-G-TCGTAAACGTAAACAAACAA-TTA-TTCAT-AATAGTT-TT-AAT---TTTCCTCTAAA-T---GAAGCCAA-A----------TT-A-G-CTCAAAT--G----------ATG--------CAGAG---AGTTTATTAT-TAT-TT-TC-TGAAAATACAATCATTTTAA----ATGTCGATCAAAATTTG-AACACAAAACGGAGAATTT--G--TCAATT-T--------GTC--GATTTT----TATTGT-AAGTTATAATGTGAAACGCAGCCC
gi|6 : cgtGCGTTTCACA-AA-A--AAATCTTAAGACAAAAATT-G-ACGTAAACGTTAACCAACAA-TTA-CTCAT-AATATTT-TTTAAT---ATTTATCCAAA-T---TAACCCAATA----------TT-G-G-CTCAAAT--C----------ATG--------CAGAA---A----ATGATATAT-TT-TC-TGGAAATACAATCATTTTCA----ACGTCATTCAAAATTTA-AACATACCACGAAAACAAT--G--TCAAAT-TGACTTA-------------------TCGT-TAGTTATTTTGTGAAACGCACCCCt
gi|7 : ctTTTCATA-AA-G--AAA-GTTACTCCAATATTT-G-TTGTAAACATAG----------T--TTCAT-AATGTTT-TT-GTT---ATTCATCTAAAAT---TAACCAGC-A----------AT-T-G-CTTTAAT--C----------ATG--------C-GGA---A----ATG-TATATATT-TC-TGAAAATGATATAATTTTAA----ACATTTATT-TAATTTA-AACATACAGTGAGCAAATC--A--TGAAAT-GAATTTA-TGGC--AAATTTAATGTAT-AT-ACGTTTGTTTATGAATGGCACCCCt
gi|8 : cataAAAAA---G-TCGTAAACTTAAACCAACAA-TTA-TTCAT-AATATCT-TT-AAT----TTTATCCAAA-T---GCACCCGA-G----------TT-G-G-CTCAAAT--C----------ATG--------CAGAA---A----GTAAATTTT-TT-TC-TGAAAATACAATTATTTTAA----ATGTCGATTAAGATTTG-AACACACAACGGAAAAATG--G--TCAAAT-TGACTTA-CGTC--GATTT---------------TTATTTTGTGAAACGCAGTCCt
gi|9 : caaaaGTTTCAAA-AA-AAAAAA-CTTACGACAAAAATA-G-TCGTAAACTTAAACCAACAC-TTT-TTCAT-AATATTT-TT-AAT---ATT-ATACAAA-T---GAAGCCAA-T----------TT-C-G-CTAAAA--------------ATA--------TACAA---A----GTTACATAT-TT-TC-AGAAAATACAATTATTTTAA----ATGCCGATAAAAATTTG-AACACACAACGGAGAAAtgga
gi|9 : aatga-AAGGTATTTTGTGAAACGCAGCggtattttgtgaaacgcagcactg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): CATATGGATAACCATGATATATTTTATGAATGTTTCATACTTTACGTTCACGACTAATTTTTTTGTGTGAAATGCAAC
Unaligned ( gi|21 ): ATGTGAGTGACCATGAAAAATAGTATAAAAGTTCCTTACGTTTACGACTGAT
Unaligned ( gi|22 ): TTCACGAATAAACTTACGATAAAAATAGGTTTTAAAAGCAAAGTAA