lowQualScore : 222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 11111111 11111 1 22 1 1 1 1 22 1 2222222 1111111 1 99999999999999999999999999999999999999999999999 2222222222222 1111111111 1 22222222 1111111111 000000000000000000000000000000000000000000000000000000000000 1
lowQualScore : 5 3 6 2 0 44 33333333 55555 1 7 3 77 11 0 6 2 33 888888 2 77 2 3 44 3 4 6 3 5 8 4 77 6 11 5 2222222 2 77 5 3333333 1 88 0 00000000000000000000000000000000000000000000000 9999999 1 1 4 777 2222222222222 2 1 33 1111111111 0 4 8 1 55 66666 8 1 44444444 3 5555555555 2 6666 555 0 3 2 99999 888888888888888888888888888888888888888888888888888888888888 3 555 9 888888 3
lowQualScore : . . . . . .. ........ ..... . . . .. .. . . . .. ...... . .. . . .. . . . . . . . .. . .. . ....... . .. . ....... . .. . ............................................... ....... . . . ... ............. . . .. .......... . . . . .. ..... . . ........ . .......... . .... ... . . . ..... ............................................................ . ... . ...... .
lowQualScore : 0 1 0 5 5 22 55555555 22222 8 6 1 66 33 7 6 5 99 222222 9 99 9 1 88 1 7 5 1 0 8 2 99 0 00 0 1111111 1 99 7 0000000 9 22 0 88888888888888888888888888888888888888888888888 3333333 2 2 0 000 7777777777777 1 1 22 2222222222 8 2 3 8 00 55555 3 9 00000000 8 1111111111 4 1111 000 2 1 7 99999 555555555555555555555555555555555555555555555555555555555555 1 444 3 888888 2
consensus : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTCCGTGCGGCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACG-GGC-GCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTT--ATACAAAT------TTG-AAAA--AATCGTA-AGCCCGT-AGCCCGTA-GACATGTCGTA-GGTGGCATTGCGCAATCCCCGCACGGGCACCGCGCGGAGGCCGCGTGGGCTTCGTACGCTCA-AATCATCTC--CGC-GCAGCCT-------CTGCACGGAAGCCGCAC-GG--GNTC-GCACG-------------------ATT---TCCGCGCAC-ATCT-------CCGCGCAGCCTCTGCACGGA-AGCCG---CACGG-GCTCCGT-----GCGATTTC-CGTGCGGAG--GCT--G-C--G--GAGACTGCACGGCA-AC--TG--CACTGNA-ATTGCA----CGG-TTNCCGTACAATCTCCGCG--------CAGCCTCCGTACG-GCT----TTGCCCC---GGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTA-CACAATGTGAACACATAC----GCC----------------------GTAGCC----GCCAC---------CT------C-A---AAAA-TCGT---ACGGAAAATCGTAGACCCATTT------ATCGCACGGCGCCCGGGGCAAATGTGA
Reference ( gi|1 ) : CCGAATTCACATTT-GACCTGCAATGGGTCTACGGAGCCCGTATCCTGC--CCATATTCCACTTTCCGTGCGGCATCTGTGCGGAGGCAGGAAGCGGCCGTGAGATTTTCGTACGGATTCACG-GGC-GCCGCGGCCTCTACGATTTTGTTTTGCGAGAAGTT--ATACAAAT------TTG-AAAA--AATCGTA-AGCCCGT-ATTCCGTA-GACAAGTCATA-GGGGGTATTGGGCAATCCCCGCACGGGCACTACGCGGAGGCCGCTTGGGACTCGGACACTCAAAATCATCTC--CGC-GCAGCCT-------CTGCACGGAAGCCACAC-GG--GCTCAGTACG-------------------ATT---NNNNNNNNNNATCT-------CCGCGCAGCCTCTGCACGGA-AGCCA---CACGG-GCTCAGT-----ACGATTTC-CGTGCGGAG--GCT--G-C--G--GAGACTGCACTGTA-AC--TG--CACTGTA-ATTGCA----CGA-TTTCCGTACAATCTCCGCA--------CAGCCTCTGTACG-GCT----TTGCCCC---GGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTA-CACAATGTGAACACATAT----GCC----------------------GT----------------------CT------C-A---AAAA-TCGT---ACGGAAAATCGTAGACCCGTTT------ATCGCACGGCTCCCGGGGCAAATGTGATC
gi|9 : CCTAATTCACATTT-GGCCTGCGATGGGTCTATGGAGCCCGTATCCTGC--CCGTTTTCGCCTTTCCGTGCGGCGTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACG-GGC-GCCGAG-----------TTTGTTAAGCGAGAAGTT--ATACAAAT------TTA-AAAAAAAATCGTA-AGCCCGT-AGCCCGTA-GACATGTCGTA-GGTGGCATTGCGCAATCCCCACACGGGCACCGCGCGGAGGCAGC
gi|4 : gCCTAATTCACATTT-GGCCTGCGATGGGTTTACGT-GCCCGTATCCTGC--CCGTATCCCCCTTTCCGTGCGGCCTCCTTGTGGAGGCAGGAGGCGGCCGTGAGCTTTTCGTACGGATTCATG-GGC-ACCTCGGCCTCTACGATTTTGTTAAGCGAGAAGTTTGA-ACAAAT------TTG-AAAA--AATCGTA-AGCCTGT-AGCCCGTA-GTCATGTCGTA-GGTGGCAATGTGCAGCCCCCGCACAGGCACTGCGCGGAGGTCACgcgctgatcgtgcagaaaacgcaagattttaggtggacattggggcaaaaaaaatcgtacggagattgtaggctcttgggacagtcgcacagctatcacatgttgccgctcgctgccggttcagtaaccgtgaaatcgcacggatattgatcagtcatcccgcagcaaccgcacaacagcacggcggctgcacggtcaccgcaccatctccgcgcagcctctgcacgg
gi|5 : ataCCTAATTCACATTT-GGCCTGCGATGGGTCTACAGAGCCCGTATCC------------CC-CTTTCCGTGCGGCCTCCATGCAGAGGCAGGAGGTGACCGTGAGATTT--GTACGGATTCACG-GGC-A---------CTACGATTTTGTTgcgctgatcgtcaagaaactgcaagatttaaggtgaacattgggtaaaaaacggcacggcggctgcacggtcatcgcaccagctccgcacagcctctgcacggaagccgcacggtttccgtgcggagaatgcacggcaactgcattgaaattgcgtacaattttcgcgtagcctctgtacggctttgccccggcctgtccccgaaggcccgtacgagaaattgcacgctgcttgcacacaatgtgaacacctacgccgtagcccgt
gi|2 : ttatgCCTAATTCACATTT-TGCCTGCAATGGGTCTAGGGAGCCCGTATCCTGT--CCGTATCCCCCTTTTTGTGTAGCCTCCGTACGGAGGCAGGAGGCGGCCGTGAGATTTTCCTACTGATTCACG-GGC-GCTACGGCCTCTACGATTTTGTTTAGCGAGAAGTT--AAGC-AAT------TTT-AAAA--AATCGTC-AGCCCGT-AGCCCGTA-GAC--GTCATA-Gaagtggaagccgcacgctgatcttccagaaaatgcaagattttaggtgaacattggggctcaaaaaaacggcacggcggctacacggtcaccgcaccatctccatgcagcctctgcactgtagccacatgggctccatatgatttctgtgtggaggctgcggagactgcatgtctactgcactgaaattgcacaatttctgtacaatctccgacagtctctgtacagctttgcctcggccttcacccgagggccgtacaagaattggcatgatgctcatacacaatgtgaacacatgttgtagccaccgtaacgatgcctcaaaattcatatggaaaatcaaacatccctttatcacacagcgcccagggcaaatgtgaaccaggta
gi|3 : gtgCCTAATTCACATTT-GGCCTACACTGGGTCTACGG-----GTAACCTGC--CCGTATCCCACTTTCCGTGCGGCCTCCGTGTGGAGGCAGGAGGCGGCCGTGAGATTTTTGAACGGATTCACG-CGC-GCCGCGGCCTCTACGATTTTGT-----------TT--ATACAAAT------TTG-AAAA--AATCGTA-AGTTCGT-GGCCCGTA-AACATGTCGTT-GATGGCATTGAGCAATCCCCtgatcatgcagataacgcaagatattagatgggcattggggaaaaaatcttacggagattgtaggctcttgggacaatcgcacggcccttgcacagccatcgcatttattttttcgtgatttccgtgcggatgctgcggagactgcacggcaactgcactgaaattgcatgatttccttaaaatctccgcgcagcctctgtacggctttgcaccggcctgtccccgagggcccgtaagagaaatcgcacgatgctcgtacacaatgtgctcacatacgccgtagcccgtagccacctacgatgcctaaaaatcgtatggaaaatcgtagacccatttatctcacggcgcccggggcaaatgttaacct
gi|17 : tgCCTAATTAACATTT-GGCCTGCGATGGGTCTATGGAGCCCGTATC---C--CC--------CTTCCCGTG------------------------CGGCCGTGAGATTTTCGTACGGATTCACG-GGC-GCCGCGGCCTCTACGAATTTGTTAAGCCAGAACTT--ATACAAAT------TTG-AAAA--AATCGTA-AGC--------CCGTA-GACATGTCGTA-GGTGGCATTTCGCAATCCCCGCACGGGCACCGCGCGatgtcgttgatggcaatgagaccgggcgctgatcgtgcaaaaaaacgcaagattttaggtggccattggggcaaaaacaatcgtacggagattgcaggctcttgtgacaatcgaacggctatcgcaactgtactgaaagtgcacaattcccgtacaatctctgcgcaacctctgtacggcattgctcaggcctgccccgggggcccgtacgagaaatcgcacgatgctcgtacacaatgtgaacacatacgccgtagccacctacgatgcctaaaaaaagtacgaaaaatcgtatatccatttatcgcacggcgcccatggcaaatgtgaatcaggca
gi|15 : tgCCTAATTCACATTT-GGCCTGCGATTGGTCTACGGAGCCCGTATCATGT--CCGTATCCCGCTTTCCGTGCGGC--CT-------------------CCGTGAGATTTTCGCACGGAAATACG-GTA-GCCGCGGCCTCTACGATTTTG-TTAGCGAAAAGTT--TTAAAAAA------CTG-AAAAATAATCGTT-AGCCCAT-A--CCAT-------GTCGTG-GGTGGCATTGCACAATCCCCGCACGGGAACCTCGCGGAAGCCGCctgatcttgcagaaaatgct
gi|8 : tgCCTAATTCACATTT-GGCCTACGATGGGTCTACGGTGTCTGTATCCTGC--CTGTATCCTACTTTCTGTGGGGTCTCCATGTGGAGGCAGGAGGCTGCTGCGAacgctgatcgtgcagaaaacgc
gi|21 : gAATTCACATTT-GGCCTTCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATTCCCCTTTCCGTGCGGCcctctacgatttcgtttagcgagtagttatacaaatttgaaaaaaatgtaagcccgtagccagtagacatgtcgtaggtggcattgcgcaatccccacacgggcaccgcgcagaagctgcacgctgattgtgcagaaaacgcaagatttaaggtggacatgggggaaaaacaaaatcaaacagagattttaggctcttgggacaaagtgcacggccttcgcacagctattgcaagggctccatatgatttccatgcgaagactgtacggcaactgcactgaaatttcacgatttctgtacaagctccgatggcccgtttgagaaatcgcacaatgctcgtactcaatgtgaacacatacaccgtagccacctacgatgcctaaaagattata
gi|19 : ttAATTCACAATG-GGCCTGCAATGAGGCTACGGAGCCCGTATCCTGC--CCGTA-TCCACCTTTCc
gi|11 : tATTCACATTT-GGCCTGCGATGGGTTTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTCCGTGCAGCATCCATGCGGAGACGGGAGGCGGCCGTGAGATTTTCGTATTGATTCACG-GGC-ACCGCGGCCTCTACGACTTTGTTTAGCGAGAAGTT--ATACAAAT------TTG-AAAA--AATCGTA-AGCCCGT-AGCCCGTA-GACATGTCGTA-GGTGGCATTGCGTAATCCCCGCACGGGCATCGCGCGGAGGCCGCacctacgatgcctaaaaatagtacggacaatcgtagaccatttatcgcacggtgcccgcggcaaatgtgaaccaag
gi|6 : tgatgcctgATTCACATTT-GGCCTGCGATTGGTCTA---AGCCCGTATCCTGT--CGGTATCCCCCTTTC--------A---GTGTGGAGGCAGGAGGCTTTCGTGAGTTTTTTGT--------ACA-GGC-TCTGCGGCATCCATGATTTTGTTTAGGGAGAAG------------------------AA--AATTGTA-AACCCAT-AT--------ACATGTCTTA-GGTGGCATTGCGCAATCTCCGCTC-GGTACCACGCTGAGTCCGgcgctgatcgtgcagaaaacgcaagattttaggtggacattgggggggaaaaaaattggacggaggaattgtaggctcttgggacaatctcacaggcctcgcacagctatcgcaaggttgctgctcactgccggagcagtaaccgtgaaatcgcactgatattgagcagt
gi|18 : cttATTTACATTTTGGCCTGCGATGGGTCTACGGAGCCCTTATCCTGCGGCC-----------TCCGTGCGGTCTCTtgcgctgatcatgcagaaaacacaagatttaagctggacatttgggacaaaaaaaaaattgtacagagattgtaggctcttgggacaatcacaaggttgccgtacgatttccgtgcggattgcatgattttcgtacaatctccgcacagcctctgtatgactatgccttggcctgcccccgtgggcccgtacaagaaaccgcataatgcccgcacacaatgtgaacatatatgttgtagccaactatgatgcttaaaaaatcgtacggaaaatcatagacccatttatcgcatggcgcccggggc
gi|7 : tgctttTCCATGTGGAGGCAGGAGGTGGCCGTGAGATTTTCGTACAGATTCAAG-GGC-ACCAAG--------GATATTGTTTAGCGAGATTTT--ATACAAAT------CTGTAAAA--AATCGTA-AGC--------CCGTA-GACATGTCGTA-GGTGGCATT------------CATGGGCAACGTGCGGAGGCTGCGTGacgattttgtttagcgataagttatacaaatttgaaaaaaatgttagcccgtagcccgtagacatgtcgtaggtggcagtgcgcaatccccgcatgggaagtgcgcgctgatcgtgcagaaaacgcaagcttttaggtg
gi|8 : ccCTGTGGGGTCTCCATGTGGAGGCAGGAGGCTGCTGCGACCTCTACGATTTCGTTTAGCGAGTAGTT--ATACAAAT------TTG-AAAA--AAATGTA-AGCCCGT-AGCCAGTA-GACATGTCGTA-GGTGGCATTGCGCAATCCCCACACGGGCACCGCGCAGAAGCTGCcttatcatgcagaatacgcaagattttaggtagacattgggggaaaaaaaaatacggagattgtaggctcttgcacagctaccgcaaggttgccactcgctgcccctgcgaagactgcacggcaactgcactgaaattgcacaatttctgtacaatctccacgcagccataaggctttgccccagcctgcccacaagggccagtaagagaaatcgcatgatgctcgtacattatgtgaacacatacgccgtagtctgtagccacctatgatgcctcaaaaattcgtacggaaaatagtataccatttatcacacagcgcctgggacaattgtgaaccaggc
gi|3 : gcctaattcacatttggcctacgatgggtctacggtgtctgtatcctgcctgtatcctactttTTTACG-GGC---CACGAACT-TACGATTTT-TTC-----AAATTT--GTATAAAC------------AA--AATCGTAGAGGCCGacgctgattgtgcagaaaacgcaagatttaaggtggacatgggggaaaaacaaaatcaaacagagattttaggctcttgggacaaagtgcacggccttcgcacagctattgcaagggctccatatgatttccatgcgaagactgtacggcaactgcactgaaatttcacgatttctgtacaagctccgatggcccgtttgagaaatcgcacaatgctcgtactcaatgtgaacacatacaccgtagccacctacgatgcctaaaagattata
gi|9 : tgcctaattcacatttggcctacactgggtctacgggtaacctgcccgtatcccactttccgtgcggcctccgtgtggaggcaggaggcggccgtgagatttttgaacggattcacgcgcgccgACG-GGC---TACGGGCT-TACGATTTTTTTTT----AAATTT--GTATAACTTCTCGCTTA-ACAA--ACTCG-G-CGCCCGTGAATCCGTACGA-AAATCTCACGGCCGCCTCCTGC---CTCCGCACGGACGCCGCACGGAcatgtcgttgatggcattgagcaatccccatgtcgttgatggcaatgagaccgggcgctgatcgtgcaaaaaaacgcaagattttaggtggccattggggcaaaaacaatcgtacggagattgcaggctcttgtgacaatcgaacggctatcgcaactgtactgaaagtgcacaattcccgtacaatctctgcgcaacctctgtacggcattgctcaggcctgccccgggggcccgtacgagaaatcgcacgatgctcgtacacaatgtgaacacatacgccgtagccacctacgatgcctaaaaaaagtacgaaaaatcgtatatccatttatcgcacggcgcccatggcaaatgtgaatcaggca
gi|18 : gcctaattcacatttggcctgcgatgggtctatggagcccgtatcctgcccgttttcgccttGCGGTCTCTACGATTTTGTTTAGCGATAAGTT--ATACAAAT------TTG-AAAA--AAATGTT-AGCCCGT-AGCCCGTA-GACATGTCGTA-GGTGGCAGTGCGCAATCCCCGCATGGGAAGTGCGCGagacatgtcgtaggtggcattgcgcaatccccacacgggcaccgcgcggaggcagcgcgctgatcgtgcagaaaacgcaagattttaggtggacattggggcaaaaaaaatcgtacggagattgtaggctcttgggacagtcgcacagctatcacatgttgccgctcgctgccggttcagtaaccgtgaaatcgcacggatattgatcagtcatcccgcagcaaccgcacaacagcacggcggctgcacggtcaccgcaccatctccgcgcagcctctgcacgg
gi|10 : tgctttatttacattttggcctgcgatgggtctacggagcccttatcctgcggcctccgtTTAGTTTAGCGAGAA-----------AT------TTG-AAAA--AATCGTT-AGCCCGT-AGCCCGTA-GAAGTGTCGTA-GGTGG-ATTGCACAATCCCCGCACGGGCACCGCGAAGAGGCCGCctgatcgtgcagaaaacgcaagcttttaggtg
gi|12 : ATCTCCGCGCAGCCTCTGCACGGAAGCCGCATGGGCTTCGTACG---------ATTTCAATGC-GGAGGCTAAGGAGACTGCACGGCAACTGCACTGA--AATT-GCACG-------------------ATT---TCCGTACA--ATCT-------CCGCGCAGCCTCTGTAAGGgcgctgatcgtgcagaaagatattaagcggatattaggggggaggggatcgtacggagattataggctctttggacaatcgcacggtcctcgcacaactatcgcaaggttgccactcgctgcctgtgcagtcagcgtgaaatcgcacagatactgagcagtcatcccgtggctttccttacaatctccgtgcagcttctgcaaggctttgcccctgccttgtcccgagaacccgtaccagaaattgcacgatgctcgtacataatgtaaatacatacgccgtagcctgtagccacctacaatgcctcaaaaatcgtagatccatttatcggacggt
gi|5 : acagcacggcggctgcacggtcaccgcaccCTCACGGTCACCTC--CT-----GCCT-------CTGCATGGAGGCCGCAC-GG--ctttgccccggcctgcccccgagggtccgtacgagaaatcgtacgatgctcgtacacaatgtgaacacatacgccgtagcccgtagtcacctatgatgcctcaaaaatcgtacgggaaatcgtagacccatttatcacacggcgcccggggcaaatgtgaaccaggca
gi|2 : ttatgcctaattcacatttggcctgcgatgggtctacagagcccgtatccccctttCTTAAAATC---TC--CGC-GCAGCCT-------CTGTACGGatttgtacggattcacgggcactacgattttgttaagtggaagccgcacgctgatcttccagaaaatgcaagattttaggtgaacattggggctcaaaaaaacggcacggcggctacacggtcaccgcaccatctccatgcagcctctgcactgtagccacatgggctccatatgatttctgtgtggaggctgcggagactgcatgtctactgcactgaaattgcacaatttctgtacaatctccgacagtctctgtacagctttgcctcggccttcacccgagggccgtacaagaattggcatgatgctcatacacaatgtgaacacatgttgtagccaccgtaacgatgcctcaaaattcatatggaaaatcaaacatccctttatcacacagcgcccagggcaaatgtgaaccaggta
gi|9 : gtgcctaattcacattttgcctgcaatgggtctagggagcccgtatcctgtccgtatccccctttttgtgtagcctccgtacggaggcaggaggcggccgtgagattttcctactgattcacgggcgctacggcctctacgattttgtttagcgagaagttaagcaattttaaaaaatcgtcagcccgtagcccgtagacgtcatagtgatcatgcagataacgcaagatattagatgggcattggggaaaaaatcttacggagattgtaggctcttgggacaatcgcacggcccttgcacagccatcgcatttattttttcgtgatttccgtgcggatgctgcggagactgcacggcaactgcactgaaattgcatgatttcAGTCATC-C--CGCAGCAACC----------GCACAACAGC---AC-GGCGGCT--GCACG-------------------GT-----CACCGCACCATCT-------CCGCGCAGCCTCTGCACGGctttgcaccggcctgtccccgagggcccgtaagagaaatcgcacgatgctcgtacacaatgtgctcacatacgccgtagcccgtagccacctacgatgcctaaaaatcgtatggaaaatcgtagacccatttatctcacggcgcccggggcaaatgttaacct
gi|12 : gcctaattcacatttggcctgcgatgggtctatggagcccgtatcctgcccgttttcgcctttccgtgcggcgtccgtgcggaggcaggaggcggccgtgagattttcgtacggattcacgggcgccgagtttgttaagcgagaagttatacaaatttaaaaaaaaatcgtaagcccgtagcccgtagacatgtcgtaggtggcattgcgcaatccccacacgggcaccgcgcggaggcagcgcgctgatcgtgcagaaaacgcaagattttaggtggacattggggcaaaaaaaatcgtacggagattgtaggctcttgggacagtcgcacagctatcacatgttgccgctcgctgccggttcagtaaccgtgaaatcgcacggatattgatcACCATCTC--CGC-GCAGCCT-------CTGCACGGAAGCCGCAT-GG--GCTTCGTACG-------------------ATT---TCAATGCGGAGGCTAAGGAGACTGCACGGCAACTGCACTGA-AATTG---CACGA-TTTCCGT-----ACAATCTC-CGCGCAG
gi|4 : acagcacggcggctgcacggtcaccgcACCAGCTC--CGC-ACAGCCT-------CTGCACGGAAGCCGCAC-GG--TTTCCGTGCGGAGAATGCACGGCAACTGCATTGAAATTGCGTACAATTT-------TCGCGTAGCCTCTGTACGGcctctgtaaggctttgccccggcctgcccccgagggtccgtacgagaaatcgtacgatgctcgtacacaatgtgaacacatacgccgtagcccgtagtcacctatgatgcctcaaaaatcgtacgggaaatcgtagacccatttatcacacggcgcccggggcaaatgtgaaccaggca
gi|16 : atacctaattcacatttggcctgcgatgggtttacgtgcccgtatcctgcccgtatccccctttccgtgcggcctccttgtggaggcaggaggcggccgtgagcttttcgtacggattcatgggcacctcggcctctacgattttgttaagcgagaagtttgaacaaatttgaaaaaatcgtaagcctgtagcccgtagtcatgtcgtaggtggcaatgtgcagcccccgcacaggcactgcgcggaggtcacgcgctgatcgtcaagaaactgcaagatttaaggtgaacattgggtaaaaaacggcacggcggctgcacggtcatcgcACCTC--TGC-GCAGCCT-------CTGTACGGctttgccccggcctgtccccgaaggcccgtacgagaaattgcacgctgcttgcacacaatgtgaacacctacgccgtagcccgt
gi|4 : agactgcactgcaactgcaatataattgcatgatttccataca-------CCGTACAGAGGCTACGC-GA--AAATTGTACGCA-----------------ATT---TCAATGCAG--TTG-------CCGTGCATTCTCCGCACGGA-AACCG---TGCGG-CTTCCGT-----GCAGAGGC-TGTGCGGAGCTGGT--G-C--G--ATGACCG---TGCA-GC--CG--Cctttgccacggcctgccccgagtgcttgtacaagaaatcgcacgatgctcgtacacaatgtgaacacatacgccgtagcctaataccacctacgatgcctctaaaatcgtacggaaaatcgtagacccatttatcacatggcatccggggcaaatgtgaaccaggca
gi|2 : atacctaattcacatttggcctgcgatgggtttacgtgcccgtatcctgcccgtatccccctttccgtgcggcctccttgtggaggcaggaggcggccgtgagcttttcgtacggattcatgggcacctcggcctctacgattttgttaagcgagaagtttgaacaaatttgaaaaaatcgtaagcctgtagcccgtagtcatgtcgtaggtggcaatgtgcagcccccgcacaggcactgcgcggaggtcacgcgctgatcgtcaagaaactgcaagatttaaggtgaacattgggtaaaaaacggcacg-------CTGCACGGCAACTGCACTGA--AATT-GCATG-------------------ATT---TCCTTAAA--ATCT-------CCGCGCAGCCTCTGTACGGctttgccccggcctgtccccgaaggcccgtacgagaaattgcacgctgcttgcacacaatgtgaacacctacgccgtagcccgt
gi|14 : gtgcctaattcacattttgcctgcaatgggtctagggagcccgtatcctgtccgtatccccctttttgtgtagcctccgtacggaggcaggaggcggccgtgagattttcctactgattcacgggcgctacggcctctacgattttgtttagcgagaagttaagcaattttaaaaaatcgtcagcccgtagcccgtagacgtcatagtgatcatgcagataacgcaagatattagatgggcattggggaaaaaatcttacggagattgtaggctcttgggacaatcgcacggcccttgcacagccatcgcatttattttttcgtgatttccgtgcggatgctgcggaga-------CTGCACGGCAACTGCACTGA--AATT-GCACG-------------------ATT---TCCGTACA--ATCT-------TCGCGCAGCCTCTGTAAGGctttgcaccggcctgtccccgagggcccgtaagagaaatcgcacgatgctcgtacacaatgtgctcacatacgccgtagcccgtagccacctacgatgcctaaaaatcgtatggaaaatcgtagacccatttatctcacggcgcccggggcaaatgttaacct
gi|12 : cactggccaatggatgattgtatcgggaccgcgatttagttgttgaTGTACGGAAATCGTGC-AA--TTTCAGTGCA-------------------GTT---GCCGTGCAG--TCT-------CCTT--AGCCTCCGCATTGA-AATCG---TACGAAGCCCA-T-----GCGGCTTC-CGTGCAGAG--GCTGCG-C--G--GAGATGGTGCGGTG-ACCGTG--CActttgtcccggctgcctccgagggcccgatgctcgtacacgatgtaaacacatacgccgaggcccgtagccacctacgatgtttcaaaaatcgtaaggaaaatcgtagacccatttagcgcacggggcccgggtcaaatgtgaaccaggcat
gi|5 : acagcacggcggcGCACGGCGGCTACAC-GG----TCA---------------------------------CCGCACCATCT-------CCATGCAGCCTCTGCACTGT-AGCCA---CATGG-GCTCCAT-----ATGATTTC-TGTGTGGAG--GCT--G-C--G--GAGACTGCA-TGTCTAC--TG--CACTGAA-ATTGCA----CAA-TTTCTGTACAATCTCCG-A--------CAGTCTCTGTACA-GCT----TTGCCTC---GGCCTTCACC-CGAGGG-CCGTACAAGAATTGGCATGATGCTCATA-CACAATGTGAACACATGTTGTAGCCACCGTAACGAT-----------GC----------------------CT------C-A---AAAT-TCAT---ATGGAAAATCAAACATCCCTTT------ATCACACAGCGCCCAGGGCAAATGTGAatctccgcgcagcctctgtaaggctttgccccggcctgcccccgagggtccgtacgagaaatcgtacgatgctcgtacacaatgtgaacacatacgccgtagcccgtagtcacctatgatgcctcaaaaatcgtacgggaaatcgtagacccatttatcacacggcgcccggggcaaatgtgaaccaggca
gi|4 : ttatgcctaattcacatttggcctgcgatgggtctacagagcccgtatccccctttccgtgcggcctccatgcagaggcaggaggtgaccgtgagatttgtacggattcacgggcactacgattttgttaagtggaagccgcacgctgatcttccagaaaatgcaagattttaggtgaacattggggctcaaaaaaacgAAACGGCAC-GGCGGCT--GCACG-------------------GT-----CATCGCACCAGCT-------CCGCACAGCCTCTGCACGGA-AGCCG---CACGG-----------------TTTC-CGTGCGGAG------------------AATGCACGGCA-AC--TG--CATTGAA-ATTGC--------------GTACAATTTTCGCG--------TAGCCTCTGTACG-GCT----TTGCCCC---GGCCTGTCCC-CGAAGGCCCGTACGAGAAATTGCACGCTGCTTGCA-CACAATGTGAACACCTAC----GCC----------------------GT----------------------accaggta
gi|12 : atacctaattcacatttggcctgcgatgggtttacgtgcccgtatcctgcccgtatccccctttccgtgcggcctccttgtggaggcaggaggcggccgtgagcttttcgtacggattcatgggcacctcggcctctacgattttgttaagcgagaagtttgaacaaatttgaaaaaatcgtaagcctgtagcccgtagtcatgtcgtaggtggcaatgtgcagcccccgcacaggcactgcgcggaggtcacgcgctgatcgtcaagaaactgcaagatttaaggtgaacattgggtaaaCAC-GGCGGCT--GCACG-------------------GT-----CACCGCACCATCT-------CCGCGCAGCCTCTGCACGGA-AGCCG---CATGG-GCTTCGT-----ACGATTTC-AATGCGGAG--GCT--A-A--G--GAGACTGCACGGCA-AC--TG--CACTGAA-ATTGCA----CGA-TTTCCGTACAATCTCCGCG--------CAGCCTCTGTAAG-GCT----TTGCCCC---GGCCTGCCCC-CGAGGGTCCGTACGAGAAATCGTACGATGCTCGTA-CACAATGTGAACACATAC----GCC----------------------GTAGCCCGTAGTCACCTATGATGCCT------C-A---AAAA-TCGT---ACGGGAAATCGTAGACCCATTT------ATCACACGGCGCCCGGGGCAAATGTGAagcccgt
gi|5 : acagTCAGTGCA-------------------GT-----AGACATGCAGTCT-------CCGC--AGCCTCCACACAGA-AATCA---TATGGAGCCCA-T-----GTGGCTAC-AGTGCAGAG--GCT--G-CATG--GAGATGGTGCGGTG-AC--CG-----TGTA-GCCGCaccaggca
gi|16 : ttatgcctaattcacatttggcctgcgatgggtctacagagcccgtatccccctttccgtgcggcctccatgcagaggcaggaggtgaccgtgagatttgtacggattcacgggcactacgattttgttaagtggaagccgcacgctgatcttccagaaaatgcaagattttaggtgaacattggggctcaaaaaaacggcacgGCATG-------------------ATT---TCCATACA--ACCT-------CTGCGCAGCCTCTGTACGGaattgcacaatttctgtacaatctccgacagtctctgtacagctttgcctcggccttcacccgagggccgtacaagaattggcatgatgctcatacacaatgtgaacacatgttgtagccaccgtaacgatgcctcaaaattcatatggaaaatcaaacatccctttatcacacagcgcccagggcaaatgtgaaccaggta
gi|6 : agactgcactgcaactgcaatataattGCATG-------------------ATT---TTCGTACA--ATCT-------CCGCACAGCCTCTGTATGctttgccacggcctgccccgagtgcttgtacaagaaatcgcacgatgctcgtacacaatgtgaacacatacgccgtagcctaataccacctacgatgcctctaaaatcgtacggaaaatcgtagacccatttatcacatggcatccggggcaaatgtgaaccaggca
gi|2 : cttattcacatttggcctgcgattggtctaagcccgtatcctgtcggtatccccctttcagtgtggaggcaggaggctttcgtgagttttttgtacaggctctgcggcatccatgattttgtttagggagaagaaaattgtaaacccatatacatgtcttaggtggcattgcgcaatctccgctcggtaccacgctgagtccgtgcgctgatcatgcagaaaacacaagatttaagctggacatttgggacaaaaaaaaaattgtacagagattgtaggctcttgggacaatcacaaggttgccgtacgatttccgtgcggattCGCACGGCCCTTGCAC----AGCCA---T-CGC-ATTTATTTTTTCGTGATTTC-CGTGCGGAT--GCT--G-C--G--GAGACTGCACGGCA-AC--TG--CACTGAA-ATTGCA----TGA-TTTCCTTAAAATCTCCGCG--------CAGCCTCTGTACG-GCT----TTGCACC---GGCCTGTCCC-CGAGGGCCCGTAAGAGAAATCGCACGATGCTCGTA-CACAATGTGCTCACATAC----GCC----------------------GTAGCCCGTAGCCACCTACGATG-CC------T-A---AAAA-TCGT---ATGGAAAATCGTAGACCCATTT------ATCTCACGGCGCCCGGGGCAAATGTactatgccttggcctgcccccgtgggcccgtacaagaaaccgcataatgcccgcacacaatgtgaacatatatgttgtagccaactatgatgcttaaaaaatcgtacggaaaatcatagacccatttatcgcatggcgcccggggc
gi|8 : gtgcctaattcacattttgcctgcaatgggtctagggagcccgtatcctgtccgtatccccctttttgtgtagcctccgtacggaggcaggaggcggccgtgagattttcctactgattcacgggcgctacggcctctacgattttgtttagcgagaagttaagcaattttaaaaaatcgtcagcccgtagcccgtagacgtcatagtgatcatgcagataacgcaagatattagatgggcattggggaaaaaatcttacggagattgtaggctcttgggacaatGCACGGCCTTCGCAC----AGCTATTGCAAGG-GCTCCAT-----ATGATTTC-CATGCGAAG------------------ACTGTACGGCA-AC--TG--CACTG-A-A-----------A-TTTC---ACGATTTC-------------------TGTACAAGCT-----------------------C-CGATGGCCCGTTTGAGAAATCGCACAATGCTCGTA-CTCAATGTGAACACATAC----ACC----------------------GT----------------------taacct
gi|6 : gcctaattcacatttggcctacgatgggtctacggtgtctgtatcctgcctgtatcctactttctgtggggtctccatgtggaggcaggaggctgctgcgacctctacgatttcgtttagcgagtagttatacaaatttgaaaaaaatgtaagcccgtagccagtagacatgtcgtaggtggcattgcgcaatccccacacgggcaccgcgcagaagctgcacgctgattgtgcagaaaacgcaagatttaaggtggacatgggggaaaaacaaaatcaaacagagattttaggctcttgggacaaagtGGACAATCA---CAAGG-TTGCCGT-----ACGATTTC-CGTGCGGAagccacctacgatgcctaaaagattata
gi|8 : cttattcacatttggcctgcgattggtctaagcccgtatcctgtcggtatccccctttcagtgtggaggcaggaggctttcgtgagttttttgtacaggctctgcggcatccatgattttgtttagggagaagaaaattgtaaacccatatacatgtcttaggtggcattgcgcaatctccgctcggtaccacgctgagtccgtgcgctgatcatgcagaaaacacaagatttaagctggacatttgggacaaaaaaaaaattgtacagagattgtaggctcttgACGA-GCATTGT-----GCGATTTCTCAAACGG----GCC--ATC--G--GAGCTTGTACAGAA-AT--CG-----TGAA-ATTTCAGTG-CAG-TTGCCGTACAGTCTTCGCA--------ttgcatgattttcgtacaatctccgcacagcctctgtatgactatgccttggcctgcccccgtgggcccgtacaagaaaccgcataatgcccgcacacaatgtgaacatatatgttgtagccaactatgatgcttaaaaaatcgtacggaaaatcatagacccatttatcgcatggcgcccggggc
gi|12 : gcctaattcacatttggcctacgatgggtctacggtgtctgtatcctgcctgtatcctactttctgtggggtctccatgtggaggcaggaggctgctgcgacctctacgatttcgtttagcgagtagttatacaaatttgaaaaaaatgtaagcccgtagccagtagacatgtcgtaggtggcattgcgcaatccccacacgggcaccgcgcagaagctgcacgctgattgtgcagaaaacgcaagatttaaggtggacatgggggaaaaacaaaatcaaacagagattttaggctcttgggacaaagtgcacggccttcgcacagctattgcaagggctccatatgatttccaC-CTTACAGAG--GCT--G-CGCG--GAGATTGTACGGAA-AT--CG-----TGCA-ATTTCAGTG-CAG-TTGCCGTGCAGTCTCCT----------TAGCCTCCGCAactcaatgtgaacacatacaccgtagccacctacgatgcctaaaagattata
gi|4 : acagcacggcggctgcacggtcaccgcaccatctccgcgcagcctctgcacggaagccgcatgggcttcgtacgatttcaaC-CGTACAGAG--GCTACG-C--G--AAAATTGTAC-GCA-AT--TT--CAATGCA-GTTGC-------------CGTGCATTCTCCGCA--------CGGAAACCGTGCG-GCT----T----CC---G---TGC------AGAGGCTGTGCG-GAGCTGGTGCGATGACCGTG-CActttgccccggcctgcccccgagggtccgtacgagaaatcgtacgatgctcgtacacaatgtgaacacatacgccgtagcccgtagtcacctatgatgcctcaaaaatcgtacgggaaatcgtagacccatttatcacacggcgcccggggcaaatgtgaaccaggca
gi|5 : atacctaattcacatttggcctgcgatgggtttacgtgcccgtatcctgcccgtatccccctttccgtgcggcctccttgtggaggcaggaggcggccgtgagcttttcgtacggattcatgggcacctcggcctctacgattttgttaagcgagaagtttgaacaaatttgaaaaaatcgtaagcctgtagcccgtagtcatgtcgtaggtggcaatgtgcagcccccgcacaggcactgcgcggaggtcacgcgctgatcgtcaagaaactgcaagatttaaggtgaacattgggtaaaaaacggcacggcggcC-TGTACAGAG--ACT--GTC--G--GAGATTGTACAGAA-AT--TG-----TGCA-ATTTCAGTG-CAG-TAGACATGCAGTCTCCG----------CAGCCTCCACACA-Gctttgccccggcctgtccccgaaggcccgtacgagaaattgcacgctgcttgcacacaatgtgaacacctacgccgtagcccgt
gi|2 : ttatgcctaattcacatttggcctgcgatgggtctacagagcccgtatccccctttccgtgcggcctccatgcagaggcaggaggtgaccgtgagatttgtacggattcacgggcactacgattttgttaagtggaagccgcacgctgatcttccagaaaatgcaagattttaggtgaacattggggctcaaaaaaacggcacggcggctacacggtcaccgcaccatctccatgcagcctctgcactgtagccacatgggctccatatgatttC-CGTACAGAG--GCT--G-C--GCGGAGATTTTAAGGAA-AT------CA-TGCA-ATTTCAGTG-CAG-TTGCCGTGCAGTCTCCG----------CAGCATCCGCACG-Gctttgcctcggccttcacccgagggccgtacaagaattggcatgatgctcatacacaatgtgaacacatgttgtagccaccgtaacgatgcctcaaaattcatatggaaaatcaaacatccctttatcacacagcgcccagggcaaatgtgaaccaggta
gi|16 : gtgcctaattcacattttgcctgcaatgggtctagggagcccgtatcctgtccgtatccccctttttgtgtagcctccgtacggaggcaggaggcggccgtgagattttcctactgattcacgggcgctacggcctctacgattttgtttagcgagaagttaagcaattttaaaaaatcgtcagcccgtagcccgtagacgtcatagtgatcatgcagataacgcaagatattagatgggcattggggaaaaaatcttacggagattgtaggctcttgggacaatcgcacggcccttgcacagccatcgcatttattttttcgtgatttC-CGTACAGAG--GCT--G-C--GCAGAGGTTGTATGGAA-ATCATG--CAAT-TATATTGCA------G-TTGCAGTGCAGTCTctttgcaccggcctgtccccgagggcccgtaagagaaatcgcacgatgctcgtacacaatgtgctcacatacgccgtagcccgtagccacctacgatgcctaaaaatcgtatggaaaatcgtagacccatttatctcacggcgcccggggcaaatgttaacct
gi|3 : C-CGTACAGAG--GTT--G-C--GCAGAGATTGTACGGGA-AT--TGTGCACTTTC-AGTACAGTTGCGA-TAGCCGTTCGATTGTCACAAGAGCCTGCAATCTCCGTACG-ATTGTTTTTGCCCCAATGGCCctttgccacggcctgccccgagtgcttgtacaagaaatcgcacgatgctcgtacacaatgtgaacacatacgccgtagcctaataccacctacgatgcctctaaaatcgtacggaaaatcgtagacccatttatcacatggcatccggggcaaatgtgaaccaggca
gi|14 : tgcctaattcacatttggcctacactgggtctacgggtaacctgcccgtatcccactttccgtgcggcctccgtgtggaggcaggaggcggccgtgagatttttgaacggattcacgcgcgccgcggcctctacgattttgtttatacaaatttgaaaaaatcgtaagttcgtggcccgtaaacatgtcgttgatggcattgagcaatccccatgtcgttgatggcaatgagaccgggcgctgatcgtgcaaaaaaacgcaagattttaggtC-CTTACAGAG--GCTGCG-C--G--AAGATTGTACGGAA-AT--CG-----TGCA-ATTTCAGTG-CAG-TTGCCGTGCAGTCcattgctcaggcctgccccgggggcccgtacgagaaatcgcacgatgctcgtacacaatgtgaacacatacgccgtagccacctacgatgcctaaaaaaagtacgaaaaatcgtatatccatttatcgcacggcgcccatggcaaatgtgaatcaggca
gi|10 : cactggccaatggatgattgtatcgggaccgcgatttagttgttC-TGTGC--AG--TCA--G-C--GT-GAAATCGCACAGAT-AC--TG--AGCAGTC-ATCCCG----TGGCTTTCCTTACAATCTCCGTG--------CAGCTTCTGCAAG-GCT----TTGCCCC---TGCCTTGTCC-CGAGAACCCGTACCAGAAATTGCACGATGCTCGTA-CATAATGTAAATACATAC----GCC----------------------GTAGC-------------------CTGTAGC-C-ACCTACAA-T-GC---CTCAAAAATCGTAGATCCATTT------ATCGGACGGctttgtcccggctgcctccgagggcccgatgctcgtacacgatgtaaacacatacgccgaggcccgtagccacctacgatgtttcaaaaatcgtaaggaaaatcgtagacccatttagcgcacggggcccgggtcaaatgtgaaccaggcat
gi|9 : ttagtttagcgagaaatttgaaaaaatcgttagcccgtagcccgtagaagtgtcgtaggtggattgcacaatccccgcacgggcaccgcgaagaggccgcgcgctgatcgtgcagaaagatattaagcggatattaggggggaggggatcgtacggagattataggctctttggacaatcgcacggtcctcgcacaactatcgcaaggttgccactcgctgcCC--G-C--A--GCAACCGCAC---A-AC--AG--CACGGCG-GCTGCA----CGG-TCACCGCACCATCTCCGCG--------CAGCCTCTGCACG-Gt
gi|7 : gcctaattcacatttggcctgcgatgggtctatggagcccgtatcctgcccgttttcgcctttccgtgcggcgtccgtgcggaggcaggaggcggccgtgagattttcgtacggattcacgggcgccgagtttgttaagcgagaagttatacaaatttaaaaaaaaatcgtaagcccgtagcccgtagacatgtcgtaggtggcattgcgcaatccccacacgggcaccgcgcggaggcagcgcgctgatcgtgcagaaaacgcaagattttaggtggacattggggcaaaaaaaatcgtacggagattgtaggctcttgggacagtcgcacagctatcacatgttgccgctcgctgccggttcagtaaccgtgaaatcgcacggatattgatcagtcatcCT--G-C--G--AAGACTGCACGGCA-AC--TG--CACTGAA-ATTGCA----CAA-TTTCTGTACAATCTCCACG--------CAGCC---ATAAG-GCT----TTGCCCC---AGCCTGCCCA-CAAGGGCCAGTAAGAGAAATCGCATGATGCTCGTA-CATTATGTGAACACATAC----GCC----------------------GTAGTCTGTAGCCACCTATGATGCCT------C-A---AAAATTCGT---ACGGAAAATAGTATA-CCATTT------ATCACACAGCGCCTGGGACAATTGTGA
gi|16 : cctccatgtggaggcaggaggtggccgtgagattttcgtacagattcaagggcaccaaggatattgtttagcgagattttatacaaatctgtaaaaaatcgtaagcccgtagacatgtcgtaggtggcattcatgggcaacgtgcggaggctgcgtgcttatcatgcagaatacgcaagattttaggtagacattgggggaaaaaaaaatacggagattgtaggctcttgcacagctaccgcaaggttgccactcgctgcccAGACTGCACTGCA-AC--TG--CAATATA-ATTGCA----TGA-TTTCCATACAACCTCTGCG--------CAGCCTCTGTACG-GCT----TTGCCAC---GGCCTG-CCC-CGAGTGCTTGTACAAGAAATCGCACGATGCTCGTA-CACAATGTGAACACATAC----GCC----------------------GTAGCCTAATACCACCTACGATGCCT------C-T---AAAA-TCGT---ACGGAAAATCGTAGACCCATTT------ATCACATGGCATCCGGGGCAAATGTGAaccaggc
gi|14 : GACTGCACGGCA-AC--TG--CACTGAA-ATTGCA----CGA-TTTCCGTACAATCTTCGCG--------CAGCCTCTGTAAG-GCT----TTGTCCC---GG-CTGCCTC-CGAGGGCC----------------CGATGCTCGTA-CACGATGTAAACACATAC----GCCGAGGCCCGTAGCCACCTACGATGT----------------------TT------C-A---AAAA-TCGT---AAGGAAAATCGTAGACCCATTT------AGCGCACGGGGCCCGGGTCAAATGTGAaccaggca
gi|3 : cactggccaatggatgattgtatcgggaccgcgatttagttgttGCA-AC--TG--TACTGAA-AGTGCA----CAA-TTCCCGTACAATCTCTGCG--------CAACCTCTGTACG-GCA----TTGCTCA---GGCCTGCCCC--GGGGGCCCGTACGAGAAATCGCACGATGCTCGTA-CACAATGTGAACACATAC----GCC----------------------GTAGCCACCTACGATG--------CC------T-A---AAAA-AAGT---ACGAAAAATCGTATATCCATTT------ATCGCACGGCGCCCATGGCAAATGTGAaccaggcat
gi|6 : tgcctaattcacatttggcctacactgggtctacgggtaacctgcccgtatcccactttccgtgcggcctccgtgtggaggcaggaggcggccgtgagatttttgaacggattcacgcgcgccgcggcctctacgattttgtttatacaaatttgaaaaaatcgtaagttcgtggcccgtaaacatgtcgttgatggcattgagcaatccccatgtcgttgatggcaatgagaccgggcgctgatcgtgcaaaaaaacgcaagattttaggtggccattggggcaaaaacaatcgtacggagattgcaggctcttgtgacaatcgaacggctatc-ATTGCA----TGA-TTTTCGTACAATCTCCGCA--------CAGCCTCTGTATG-ACT----ATGCCTT---GGCCTGCCCC-CGTGGGCCCGTACAAGAAACCGCATAATGCCCGCA-CACAATGTGAACATATAT----GTT----------------------GTAGCCAACTATGATG--------CT------TAA---AAAA-TCGT---ACGGAAAATCATAGACCCATTT------ATCGCATGGCGCCCGGGGCatcaggca
gi|13 : cttattcacatttggcctgcgattggtctaagcccgtatcctgtcggtatccccctttcagtgtggaggcaggaggctttcgtgagttttttgtacaggctctgcggcatccatgattttgtttagggagaagaaaattgtaaacccatatacatgtcttaggtggcattgcgcaatctccgctcggtaccacgctgagtccgtgcgctgatcatgcagaaaacacaagatttaagctggacatttgggacaaaaaaaaaattgtacagagattgtaggctcttgggacaatcacaaggttgccgtacgatttccgtgcggCCGCACCATGGCCGTG--------CAGCCTCTGTACG-GCT----TTGCCTC---GACCTACCCCCCGAGGGCCCGTACGAGAAATCGCACGATGCTCGTA-CACAATGTGAACACATAC----GCCTTATCCTGTAGCCACCTACGATGC----------------------CT------C-A---AAAA-TCGT---ACGGAAAATCGTAGACCCATTT------ATCGCGCGGCGCCCGGGGTAAATGTGA
gi|20 : ctatcgcaaggttgccgctcgcagcccgtgcagtaaccgtgaaatggcacggatattgagcagtcatcccgcgcaaacccacagcggAAATCACACG-TGCTCGTA-CACAATGTGAACACATAC----GCC----------------------ATAGCCAGTAGCCAC---------CTATGATGC-C---GAAA-TTTTTTTACGGAAAATCGTAGACCCATTT------ATTGCATGGCGCCCGGGGCAAATGTGAac
gi|19 : ATCGCACGGTGCCCGCGGCA-AATGTGAACacgaggca
gi|19 : taattcacaatgggcctgcaatgaggctacggagcccgtatcctgcccgtatccacctttcacctacgatgcctaaaaatagtacggacaatcgtagaccatttCACCTAC----GAT----------------------GC----------------------CT--------A---AAAA-TAGT---ACGGACAATCGTAGACC-ATTT------ATCGCACGGTGCCCGCGGCAAATGTGAcaag
gi|9 : taattcacaatgggcctgcaatgaggctacggagcccgtatcctgcccgtatccaccttt-A---AAAA-TCGT---ACGG-AGATTGTAGGCTC--TTGGGACAGTCGCACAGCTaccaag
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111
lowQualScore : 111111111 1111111 2222222 7777777777777777777777777777777777777777777777777777777777 333333 111 22 1111 111111 11111111111111111111111111111111111111111111111111 111111
lowQualScore : 2 33 2 33 2 0 3 33 0 5555 33 2 33 2 1 2 5555 000000000 2 0 33 0000000 6666 1 5555555 1111111111111111111111111111111111111111111111111111111111 2 8 6 111111 1 777 5 55 4 3 0 4444 1 3 111111 44 1 77 1 77 33 33 33 1 5555 77 2 4 444 99999999 5555 3 2 5555 555 0 3 9999999 44444444444444444444444444444444444444444444444444 666 0 555555
lowQualScore : . .. . .. . . . .. . .... .. . .. . . . .... ......... . . .. ....... .... . ....... .......................................................... . . . ...... . ... . .. . . . .... . . ...... .. . .. . .. .. .. .. . .... .. . . ... ........ .... . . .... ... . . ....... .................................................. ... . ......
lowQualScore : 9 99 9 99 9 8 6 99 9 7777 77 7 77 7 1 7 7777 777777777 7 1 99 0000000 5555 2 1111111 1111111111111111111111111111111111111111111111111111111111 8 2 7 333333 0 777 2 55 0 6 2 7777 2 6 666666 00 2 33 2 99 99 77 77 9 0000 11 6 7 111 11111111 3333 6 5 7777 000 2 1 3333333 77777777777777777777777777777777777777777777777777 999 1 333333
consensus : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTT--ATAC----AAATTT--G-AAAAA--ATCGTA-AGCCCGTAGCCCGTAGACA-TG----TC---------GTA-GGTGGCATTGCGCAA--TCCCCGCA-------CGGGCA----CCGCGCGGAGGCCGCGCGGGCTGATCGTGCGCT---AATCATCT-----CCGC-GCAGCCT-------C----TGCAC----GG----AAACGGCAC-GGCGGCT-GCACGGTC-ACCGCAC-CATCTCCGCGCGG-CCTCT-GCACGGAA--GCCGCACG-GGC---TCCGT-GCGATTTCCGTGCGGAGGCTGCG--GAGACTGC--ACGGCAAC--TG--CACTGAAATTGCA----CGA-TTTCCGTACAATC-TCC---GC--------GC----AGCCTCTGTACG-G----CTTTGCCCC---GGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCC-------GTAGCC-GTAGCC--------A---------C----C---------T--------CAAAAA---TCGTACGGAAAATCGTAGACCCATTT------ATCGCACGGCGCCCGGGGCAAATGTGA
Reference ( family-5232 ) : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTT--ATAC----AAATTT--G-AAAAA--ATCGTA-AGCCCGTAGCCCGTAGACA-TG----TC---------GTA-GGTGGCATTGCGCAA--TCCCCGCA-------CGGGCA----CCGCGCGGAGGCCGCGTGGGCT--TCGTACGCTC-AAATCATCT-----CCGC-GCAGCCT-------C----TGCAC----GG----AAGCCGCAC-GG-GNTC-GCACGATT-TCCGCGCACATCTCCGCGCAG-CCTCT-GCACGGAA--GCCGCACG-GGC---TCCGT-GCGATTTCCGTGCGGAGGCTGCG--GAGACTGC--ACGGCAAC--TG--CACTGNAATTGCA----CGG-TTNCCGTACAATC-TCC---GC--------GC----AGCCTCCGTACG-G----CTTTGCCCC---GGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCC-------GTAGCC----GCC--------A---------C----C---------T--------CAAAAA---TCGTACGGAAAATCGTAGACCCATTT------ATCGCACGGCGCCCGGGGCAAATGTGA
gi|1 : CCGAATTCACATTT-GACCTGCAATGGGTCTACGGAGCCCGTATCCTGC--CCATATTCCACTTTC-CGTGCG--GCATCTGTGCGGAGGCAGGAAGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTTGCGAGAAGTT--ATAC----AAATTT--G-AAAAA--ATCGTA-AGCCCGTATTCCGTAGACA-AG----TC---------ATA-GGGGGTATTGGGCAA--TCCCCGCA-------CGGGCA----CTACGCGGAGGCCGCTTGGGAC--TCGGACACTCAAAATCATCT-----CCGC-GCAGCCT-------C----TGCAC----GG----AAGCCACAC-GG-GCTCAGTACGATTNNNNNNNNNNATCTCCGCGCAG-CCTCT-GCACGGAA--GCCACACG-GGC---TCAGT-ACGATTTCCGTGCGGAGGCTGCG--GAGACTGC--ACTGTAAC--TG--CACTGTAATTGCA----CGA-TTTCCGTACAATC-TCC---GC--------AC----AGCCTCTGTACG-G----CTTTGCCCC---GGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATATGCC-------GT----------------------------------C---------T--------CAAAAA---TCGTACGGAAAATCGTAGACCCGTTT------ATCGCACGGCTCCCGGGGCAAATGTGA
gi|10 : TTAGTTTAGCGAGAA---------------ATTT--G-AAAAA--ATCGTT-AGCCCGTAGCCCGTAGAAG-TG----TC---------GTA-GGTGG-ATTGCACAA--TCCCCGCA-------CGGGCA----CCGCGAAGAGGCCGCGC--GCTGATCGTGCtc
gi|10 : CACGGGATGACTGCTCA-GTA---TCTGT-GCGATTT-CACGCTGA--CTGCA--CAGGCAGCGAGTGGCAACCTTG--CGAT--AGTTGTG----CGA-GGACCGTGCGATTGTCCAAAGA--------GCCTATAATCTCCGTACG-agaaagatattaagcggatattaggggggaggggatcgtacggagattataggctctttggacaatcgcacggtcctcgcacaactatcgcaaggttgccactcgctgcctgtgcagtcagcgtgaaatcgcacagatactgagcagtcatcccgtggctttccttacaatctccgtgcagcttctgcaaggctttgcccctgccttgtcccgagaacccgtaccagaaattgcacgatgctcgtacataatgtaaatacatacgccgtagcctgtagccacctacaatgcctcaaaaatcgtagatccatttatcggacggt
gi|10 : ttagtttagcgagaaatttgaaaaaatcgttagcccgtagcccgtagaagtgtcgtaggtggattgcacaatccccgcacgggcaccgcgaagaggccgcgcgctgatcgtgcagaaagatattaagcggatattaggggggaggggatCGCACGGTCCTC--GCAC--AACTATCGCAAG-GTT---GCCAC-TCGCTGCCTGTGC--AGTCAGCGT-GAAATCGC--ACAGATAC--TG--AGCAGTCATCCCG----TGGCTTTCCTTACAATC-TCC---GT--------GC----AGCTTCTGCAAG-G----CTTTGCCCC---TGCCTTGTCC-CGAGAACCCGTACCAGAAATTGCACGATGCTCGTACATAATGTAAATACATACGCC-------GTAGCCTGTAGCC--------A---------C----C---------T----------ACAA---T-GCCTCAAAAATCGTAGATCCATTT------ATCGGACGGgctttccttacaatctccgtgcagcttctgcaaggctttgcccctgccttgtcccgagaacccgtaccagaaattgcacgatgctcgtacataatgtaaatacatacgccgtagcctgtagccacctacaatgcctcaaaaatcgtagatccatttatcggacggt
gi|11 : ttagtttagcgagaaatttgaaaaaatcgttagcccgtagcccgtagaagtgtcgtaggtggattgcacaatccccgcacgggcaccgcgaagaggccgcgcgctgatcgtgcagaaagatattaagcggatattaggggggaggggatcgtacggagattataggctctttggacaatCCTGATTCACATTT-GGCCTGCGATGGGTTTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCA--GCATCCATGCGGAGACGGGAGGCGGCCGTGAGATTTTCGTATTGATTCACGGGCACCGCGGCCTCTACGACTTTGTTTAGCGAGAAGTT--ATAC----AAATTT--G-AAAAA--ATCGTA-AGCCCGTAGCCCGTAGACA-TG----TC---------GTA-GGTGGCATTGCGTAA--TCCCCGCA-------CGGGCA----TCGCGCGGAGGCCGCGC--GCTGATCGTGCt
gi|12 : tgatgGCAC-GGCGGCT-GCACGGTC-ACCGCAC-CATCTCCGCGCAG-CCTCT-GCACGGAA--GCCGCATG-GGC---TTCGT-ACGATTTCAATGCGGAGGCTAAG--GAGACTGC--ACGGCAAC--TG--CACTGAAATTGCA----CGA-TTTCCGTACAATC-TCC---GC--------GC----AGCCTCTGTAAG-G----CTTTGCCCC---GGCCTGCCCC-CGAGGGTCCGTACGAGAAATCGTACGATGCTCGTACACAATGTGAACACATACGCC-------GTAGCCCGTAGTC--------ACCTATGATGC----C---------T--------CAAAAA---TCGTACGGGAAATCGTAGACCCATTT------ATCACACGGCGCCCGGGGCAAATGTGAagaaaacgcaagattttaggtggacattgggggggaaaaaaattggacggaggaattgtaggctcttgggacaatctcacaggcctcgcacagctatcgcaaggttgctgctcactgccggagcagtaaccgtgaaatcgcactgatattgagcagt
gi|13 : aca--GCCGCTCGCAGC----CCGT-GCAGTAACCGTGAAATGGC-ACG--GATATTGA--GCAGTCAT--CC--CGC-GCAAACCCA----CAG-CGGCCGCACCATG-GCC---GT--------GC----AGCCTCTGTACG-G----CTTTGCCTC---GACCTACCCCCCGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCTTATCCTGTAGCC----ACCTACGAT--G---------C----C---------T--------CAAAAA---TCGTACGGAAAATCGTAGACCCATTT------ATCGCGCGGCGCCCGGGGTAAATGTGAaccaggca
gi|14 : ctatcgcaaggttCT-GCGCGAAG--ATTGTACG-GAA---ATCGT-GCAATTTCAGTGCAG---TTGCC--G----TGC--A-GTCAAC------AACT-AAATCGC------GG-TCCCGATACAATCATCC---ac
gi|14 : cactggccaatGACTGC--ACGGCAAC--TG--CACTGAAATTGCA----CGA-TTTCCGTACAATC-TTC---GC--------GC----AGCCTCTGTAAG-G----CTTTGTCCC---GG-CTGCCTC-CGAGGGCC----------------CGATGCTCGTACACGATGTAAACACATACGCC-------GAGGCCCGTAGCC--------A---------C----CTACGATGTTT--------CAAAAA---TCGTAAGGAAAATCGTAGACCCATTT------AGCGCACGGGGCCCGGGTCAAATGTGAcctctgtaaggctttgtcccggctgcctccgagggcccgatgctcgtacacgatgtaaacacatacgccgaggcccgtagccacctacgatgtttcaaaaatcgtaaggaaaatcgtagacccatttagcgcacggggcccgggtcaaatgtgaaccaggcat
gi|15 : cactggccaatggatgattgtatcgggaccgcgatttagttgttCCTAATTCACATTT-GGCCTGCGATTGGTCTACGGAGCCCGTATCATGT--CCGTATCCCGCTTTC-CGTGCG--GCCTCCGTG---------------------AGATTTTCGCACGGAAATACGGTAGCCGCGGCCTCTACGATTTTGTT-AGCGAAAAGTT--TTAA----AAAACT--G-AAAAATAATCGT--------TAGCCCATAC-CA-TG----TC---------GTG-GGTGGCATTGCACAA--TCCCCGCA-------CGGGAA----CCTCGCGGAAGCCGCaccaggcat
gi|16 : tgAGACTGC--ACTGCAAC--TG--CAATATAATTGCA----TGA-TTTCCATACAACC-TCT---GC--------GC----AGCCTCTGTACG-G----CTTTGCCAC---GGCCTG-CCC-CGAGTGCTTGTACAAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCC-------GTAGCCTAATACC--------ACCTACGATGC----C---------T--------CTAAAA---TCGTACGGAAAATCGTAGACCCATTT------ATCACATGGCATCCGGGGCAAATGTGAacgctgatcgtgcagaaaacgc
gi|17 : CCTAATTAACATTT-GGCCTGCGATGGGTCTATGGAGCCCGTATCC-------------CCCTTCC-CGTGCG--G------------------------CCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGAATTTGTTAAGCCAGAACTT--ATAC----AAATTT--G-AAAAA--ATCGTA--------AGCCCGTAGACA-TG----TC---------GTA-GGTGGCATTTCGCAA--TCCCCGCA-------CGGGCA----CCGCGCGaccaggca
gi|18 : tgATTTACATTTTGGCCTGCGATGGGTCTACGGAGCCCTTATCCTGCGGCC-----------TC-CGTGCG--GTCTCctgatcttgcagaaaatgct
gi|18 : tgctttGCGGTCTCTACGATTTTGTTTAGCGATAAGTT--ATAC----AAATTT--G-AAAAA--AATGTT-AGCCCGTAGCCCGTAGACA-TG----TC---------GTA-GGTGGCAGTGCGCAA--TCCCCGCA-------TGGGAA----GTGCGCGtacgattttgtttagcgataagttatacaaatttgaaaaaaatgttagcccgtagcccgtagacatgtcgtaggtggcagtgcgcaatccccgcatgggaagtgcgcgctgatcgtgcagaaaacgcaagcttttaggtg
gi|19 : tgctttatttacattttggcctgcgatgggtctacggagcccttatcctgcggcctccgtTAATTCACAATG-GGCCTGCAATGAGGCTACGGAGCCCGTATCCTGC--CCGTATCCACCTTTCACCTACGATGCCTctgatcgtgcagaaaacgcaagcttttaggtg
gi|19 : ---------C----C---------T---------AAAAA---TAGTACGGACAATCGTAGACC-ATTT------ATCGCACGGTGCCCGCGGCAAATGTGAaaaaatagtacggacaatcgtagaccatttatcgcacggtgcccgcggcaaatgtgaaccaag
gi|2 : taattcacaatgggcctgcaatgaggctacggagcccgtatcctgcccgtatccacctttcacctacgatgCCTAATTCACATTT-TGCCTGCAATGGGTCTAGGGAGCCCGTATCCTGT--CCGTATCCCCCTTTT-TGTGTA--GCCTCCGTACGGAGGCAGGAGGCGGCCGTGAGATTTTCCTACTGATTCACGGGCGCTACGGCCTCTACGATTTTGTTTAGCGAGAAGTT--AAGC-----AATTT--T-AAAAA--ATCGTC-AGCCCGTAGCCCGTAGAC---G----TC---------ATA-Gaccaag
gi|2 : gtgAAAAA---TCTTACGG-AGATTGTAGGCTC--TTGGGACAATCGCACGGCtgatcatgcagataacgcaagatattagatgggcattggggaaaaaatcttacggagattgtaggctcttgggacaatcgcacggcccttgcacagccatcgcatttattttttcgtgatttccgtgcggatgctgcggagactgcacggcaactgcactgaaattgcatgatttccttaaaatctccgcgcagcctctgtacggctttgcaccggcctgtccccgagggcccgtaagagaaatcgcacgatgctcgtacacaatgtgctcacatacgccgtagcccgtagccacctacgatgcctaaaaatcgtatggaaaatcgtagacccatttatctcacggcgcccggggcaaatgttaacct
gi|2 : gtgcctaattcacattttgcctgcaatgggtctagggagcccgtatcctgtccgtatccccctttttgtgtagcctccgtacggaggcaggaggcggccgtgagattttcctactgattcacgggcgctacggcctctacgattttgtttagcgagaagttaagcaattttaaaaaatcgtcagcccgtagcccgtagacgtcatagtgatcatgcagataacgcaagatattagatgggcattggggaCGCACGG-CCCTT-GCACAGCC--ATCGCATT-TAT---TTTTTCGTGATTTCCGTGCGGATGCTGCG--GAGACTGC--ACGGCAAC--TG--CACTGAAATTGCA----TGA-TTTCCTTAAAATC-TCC---GC--------GC----AGCCTCTGTACG-G----CTTTGCACC---GGCCTGTCCC-CGAGGGCCCGTAAGAGAAATCGCACGATGCTCGTACACAATGTGCTCACATACGCC-------GTAGCCCGTAGCC--------A---------C----C---------TACGATGCCTAAAAA---TCGTATGGAAAATCGTAGACCCATTT------ATCTCACGGCGCCCGGGGCAAATGTccttgcacagccatcgcatttattttttcgtgatttccgtgcggatgctgcggagactgcacggcaactgcactgaaattgcatgatttccttaaaatctccgcgcagcctctgtacggctttgcaccggcctgtccccgagggcccgtaagagaaatcgcacgatgctcgtacacaatgtgctcacatacgccgtagcccgtagccacctacgatgcctaaaaatcgtatggaaaatcgtagacccatttatctcacggcgcccggggcaaatgttaacct
gi|20 : gtgcctaattcacattttgcctgcaatgggtctagggagcccgtatcctgtccgtatccccctttttgtgtagcctccgtacggaggcaggaggcggccgtgagattttcctactgattcacgggcgctacggcctctacgattttgtttagcgagaagttaagcaattttaaaaaatcgtcagcccgtagcccgtagacgtcatagtgatcatgcagataacgcaagatattagatgggcattggggaaaaaatcttacggagattgtaggctcttgggacaatAAATCACACG-TGCTCGTACACAATGTGAACACATACGCC-------ATAGCCAGTAGCC--------A---------C----C---------TATGATG--CCGAAATTTTTTTACGGAAAATCGTAGACCCATTT------ATTGCATGGCGCCCGGGGCAAATGTGAtaacct
gi|21 : TAATTCACATTT-GGCCTTCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATTCCCCTTTC-CGTGCG--GCCacgaggca
gi|3 : tCCTAATTCACATTT-GGCCTACACTGGGTCTACGG-----GTAACCTGC--CCGTATCCCACTTTC-CGTGCG--GCCTCCGTGTGGAGGCAGGAGGCGGCCGTGAGATTTTTGAACGGATTCACGCGCGCCGCGGCCTCTACGATTTTGT-----------TT--ATAC----AAATTT--G-AAAAA--ATCGTA-AGTTCGTGGCCCGTAAACA-TG----TC---------GTT-GATGGCATTGAGCAA--TCCCC
gi|3 : tgCGTGCGA-TTTCTCGTACGG----GCCCCCGG-GGCAGGCCTGA-GCAATG-CCGTACAGAGGTTGCGCAGAGATTGT--ACGGGAAT--TGTGCACTTTCAGTACAGTTGCGA-TAGCCGTTCGATT-GTC---ACAAGAGCCTGC----AATCTCCGTACG-ATTGTTTTTGCCCCAATGGCCatgtcgttgatggcaatgagaccgggcgctgatcgtgcaaaaaaacgcaagattttaggtggccattggggcaaaaacaatcgtacggagattgcaggctcttgtgacaatcgaacggctatcgcaactgtactgaaagtgcacaattcccgtacaatctctgcgcaacctctgtacggcattgctcaggcctgccccgggggcccgtacgagaaatcgcacgatgctcgtacacaatgtgaacacatacgccgtagccacctacgatgcctaaaaaaagtacgaaaaatcgtatatccatttatcgcacggcgcccatggcaaatgtgaatcaggca
gi|3 : tgcctaattcacatttggcctacactgggtctacgggtaacctgcccgtatcccactttccgtgcggcctccgtgtggaggcaggaggcggccgtgagatttttgaacggattcacgcgcgccgcggcctctacgattttgtttatacaaatttgaaaaaatcgtaagttcgtggcccgtaaacatgtcgttgatggcattgagcaatccccatgtcgttgatggcaatgagaccgggcgctgatcgtgcaaaaaaacgcaagattttaggtGCAAC--TG--TACTGAAAGTGCA----CAA-TTCCCGTACAATC-TCT---GC--------GC----AACCTCTGTACG-G----CATTGCTCA---GGCCTGCCCC--GGGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCC-------GTAGCC----ACCT-------A---------CGATGC---------C--------TAAAAA---AAGTACGAAAAATCGTATATCCATTT------ATCGCACGGCGCCCATGGCAAATGTGAatgctcgtacacaatgtgaacacatacgccgtagccacctacgatgcctaaaaaaagtacgaaaaatcgtatatccatttatcgcacggcgcccatggcaaatgtgaatcaggca
gi|4 : tgcctaattcacatttggcctacactgggtctacgggtaacctgcccgtatcccactttccgtgcggcctccgtgtggaggcaggaggcggccgtgagatttttgaacggattcacgcgcgccgcggcctctacgattttgtttatacaaatttgaaaaaatcgtaagttcgtggcccgtaaacatgtcgttgatggcattgagcaatccccatgtcgttgatggcaatgagaccgggcgctgatcgtgcaaaaaaacgcaagattttaggtggccattggggcaaaaacaatcgtacggagattgcaggctcttgtgacaatcgaacggctatcCCTAATTCACATTT-GGCCTGCGATGGGTTTACGT-GCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCTTGTGGAGGCAGGAGGCGGCCGTGAGCTTTTCGTACGGATTCATGGGCACCTCGGCCTCTACGATTTTGTTAAGCGAGAAGTTTGA-AC----AAATTT--G-AAAAA--ATCGTA-AGCCTGTAGCCCGTAGTCA-TG----TC---------GTA-GGTGGCAATGTGCAG--CCC----------------------CCGCACAGGCACTGCGCGGAGG--TCACGCGCT---GATCGTCAAGAAACTGC-A-AGATT-------TAAGGTGAACATTGGGTAAAAAACGGCAC-GGCGGCT-GCACGGTC-ATCGCAC-CAGCTCCGCACAG-CCTCT-GCACGGAA--GCCGCACG-G---------------TTTCCGTGCGGAG-----------AATGC--ACGGCAAC--TG--CATTGAAATTGC--------------GTACAATT-TTC---GC--------GT----AGCCTCTGTACG-G----CTTTGCCCC---GGCCTGTCCC-CGAAGGCCCGTACGAGAAATTGCACGCTGCTTGCACACAATGTGAACACCTACGCC-------GTAGCC----atcaggca
gi|5 : ataCCTAATTCACATTT-GGCCTGCGATGGGTCTACAGAGCCC-------------GTATCCCCCTTTC-CGTGCG--GCCTCCATGCAGAGGCAGGAGGTGACCGTGAGATTT--GTACGGATTCACGGGCA---------CTACGATTTTGTTAAGTG-GAAGCC--GCACGCTGATCTTC--C-AGAAA--AT-GCA-AGATTTTAG---GTGAACATTGGGGCTCAAAAAAACGGCACGGCGGC--TACACGG--TCACCGCACCATCTCCATGCAGCCTCTGCACTGTAGCCACATGGGCT--CCATATG------ATT-TCT-----GTGT-GGAGGCTGCGGAGAC----TGCAT----GT----CTACTGCACTGA-AATT-GCACAATT-TCTGTACA-ATCTCCG-ACAG-TCTCT-GTACAGcgt
gi|5 : ttatg----AAACGGCAC-GGCGGCT-ACACGGTC-ACCGCAC-CATCTCCATGCAG-CCTCT-GCACTGTA--GCCACATG-GGC---TCCAT-ATGATTTCTGTGTGGAGGCTGCG--GAGACTGC--ATGTCTAC--TG--CACTGAAATTGCA----CAA-TTTCTGTACAATC-TCC---G---------AC----AGTCTCTGTACA-G----CTTTGCCTC---GGCCTTCACC-CGAGGG-CCGTACAAGAATTGGCATGATGCTCATACACAATGTGAACACAT--GTT-------GTAGCC----ACCGTAACGATG---------C----C---------T--------CAAAAT---TCATATGGAAAATCAAACATCCCTTT------ATCACACAGCGCCCAGGGCAAATGTGActttgcctcggccttcacccgagggccgtacaagaattggcatgatgctcatacacaatgtgaacacatgttgtagccaccgtaacgatgcctcaaaattcatatggaaaatcaaacatccctttatcacacagcgcccagggcaaatgtgaaccaggta
gi|6 : ttatgcctaattcacatttggcctgcgatgggtctacagagcccgtatccccctttccgtgcggcctccatgcagaggcaggaggtgaccgtgagatttgtacggattcacgggcactacgattttgttaagtggaagccgcacgctgatcttccagaaaatgcaagattttaggtgaacattggggctcaaaaCTTATTCACATTT-GGCCTGCGATTGGTCTA---AGCCCGTATCCTGT--CGGTATCCCCCTT--------------TCAGTGTGGAGGCAGGAGGCTTTCGTGAGTTTTTTGT--------ACAGGCTCTGCGGCATCCATGATTTTGTTTAGGGAGAAG------------------------AAA--ATTGTA-AACCCATA-----T--ACA-TG----TC---------TTA-GGTGGCATTGCGCAA--TCTCCGCT-------C-GGTA----CCACGCTGAGTCCGTGCGaccaggta
gi|6 : AC----AAA-----A-AAAAA--ATTGTACAG-----AGATTGTAGGC--------TC---------TTG-GG--ACAAT-CACAAGGTTGCCGTA-------CGATTT----CCGTGCGGA--TTGCATGATTT--TCGTACA---------ATCT-----CCGC-ACAGCCT-------C----TGTAT----Gctgatcatgcagaaaacacaagatttaagctggacatttgggacaaaaaaaaaattgtacagagattgtaggctcttgggacaatcacaaggttgccgtacgatttccgtgcggattgcatgattttcgtacaatctccgcacagcctctgtatgactatgccttggcctgcccccgtgggcccgtacaagaaaccgcataatgcccgcacacaatgtgaacatatatgttgtagccaactatgatgcttaaaaaatcgtacggaaaatcatagacccatttatcgcatggcgcccggggc
gi|6 : cttattcacatttggcctgcgattggtctaagcccgtatcctgtcggtatccccctttcagtgtggaggcaggaggctttcgtgagttttttgtacaggctctgcggcatccatgattttgtttagggagaagaaaattgtaaacccatatacatgtcttaggtggcattgcgcaatctccgctcggtaccacgctgagtccgtgcgctgatcatgcagaaaacacaagatttaagctggacatttgggATTGCA----TGA-TTTTCGTACAATC-TCC---GC--------AC----AGCCTCTGTATG-A----CTATGCCTT---GGCCTGCCCC-CGTGGGCCCGTACAAGAAACCGCATAATGCCCGCACACAATGTGAACATATATGTT-------GTAGCCA---ACT--------ATGATG----C----T---------T--------AAAAAA---TCGTACGGAAAATCATAGACCCATTT------ATCGCATGGCGCCCGGGGCactatgccttggcctgcccccgtgggcccgtacaagaaaccgcataatgcccgcacacaatgtgaacatatatgttgtagccaactatgatgcttaaaaaatcgtacggaaaatcatagacccatttatcgcatggcgcccggggc
gi|7 : cttattcacatttggcctgcgattggtctaagcccgtatcctgtcggtatccccctttcagtgtggaggcaggaggctttcgtgagttttttgtacaggctctgcggcatccatgattttgtttagggagaagaaaattgtaaacccatatacatgtcttaggtggcattgcgcaatctccgctcggtaccacgctgagtccgtgcgctgatcatgcagaaaacacaagatttaagctggacatttgggacaaaaaaaaaattgtacagagattgtaggctcttgggacaatcacaaggttgccgtacgatttccgtgcggCCTCCATGTGGAGGCAGGAGGTGGCCGTGAGATTTTCGTACAGATTCAAGGGCACCAAG--------GATATTGTTTAGCGAGATTTT--ATAC----AAATCT--GTAAAAA--ATCGTA--------AGCCCGTAGACA-TG----TC---------GTA-GGTGGCATT--------------CA-------TGGGCA----ACGTGCGGAGGCTGCGTG
gi|7 : CTGCG--AAGACTGC--ACGGCAAC--TG--CACTGAAATTGCA----CAA-TTTCTGTACAATC-TCC---AC--------GC----AGCC---ATAAG-G----CTTTGCCCC---AGCCTGCCCA-CAAGGGCCAGTAAGAGAAATCGCATGATGCTCGTACATTATGTGAACACATACGCC-------GTAGTCTGTAGCC--------ACCTATGATGC----C---------T--------CAAAAAT--TCGTACGGAAAATAGTATA-CCATTT------ATCACACAGCGCCTGGGACAATTGTGActtatcatgcagaatacgcaagattttaggtagacattgggggaaaaaaaaatacggagattgtaggctcttgcacagctaccgcaaggttgccactcgctgcccctgcgaagactgcacggcaactgcactgaaattgcacaatttctgtacaatctccacgcagccataaggctttgccccagcctgcccacaagggccagtaagagaaatcgcatgatgctcgtacattatgtgaacacatacgccgtagtctgtagccacctatgatgcctcaaaaattcgtacggaaaatagtataccatttatcacacagcgcctgggacaattgtgaaccaggc
gi|8 : cctccatgtggaggcaggaggtggccgtgagattttcgtacagattcaagggcaccaaggatattgtttagcgagattttatacaaatctgtaaaaaatcgtaagcccgtagacatgtcgtaggtggcattcatgggcaacgtgcggaggctgcgtgcttatcatgcagaatacgcaagattttaggtagacattgggggaaaaaaaaatacggagattgtaggctcttgcacagctaccgcaaggttgccactcgctgcccCCTAATTCACATTT-GGCCTACGATGGGTCTACGGTGTCTGTATCCTGC--CTGTATCCTACTTTC-TGTGGG--GTCTCCATGTGG-------AGGCAG----GAGGCT-------------------GCTGCGACCTCTACGATTTCGTTTAGCGAGTAGTT--ATAC----AAATTT--G-AAAAA--AATGTA-AGCCCGTAGCCAGTAGACA-TG----TC---------GTA-GGTGGCATTGCGCAA--TCCCCACA-------CGGGCA----CCGCGCAGAAGCTGCaccaggc
gi|8 : gGCACGG-CCTTC-GCACAGCT--ATTGCAAG-GGC---TCCAT-ATGATTTCCATGCGAA-----------GACTGT--ACG---------------GCAACTGCA----C---------TGAAATT-TC--------------AC----GATTTCTGTACAAG----CT-------------------C-CGATGGCCCGTTTGAGAAATCGCACAATGCTCGTACTCAATGTGAACACATACACC-------GTAGCC----ACCTACGAT--G---------C----C---------T--------AAAAGA---TTATAacgctgattgtgcagaaaacgcaagatttaaggtggacatgggggaaaaacaaaatcaaacagagattttaggctcttgggacaaagtgcacggccttcgcacagctattgcaagggctccatatgatttccatgcgaagactgtacggcaactgcactgaaatttcacgatttctgtacaagctccgatggcccgtttgagaaatcgcacaatgctcgtactcaatgtgaacacatacaccgtagccacctacgatgcctaaaagattata
gi|9 : gcctaattcacatttggcctacgatgggtctacggtgtctgtatcctgcctgtatcctactttctgtggggtctccatgtggaggcaggaggctgctgcgacctctacgatttcgtttagcgagtagttatacaaatttgaaaaaaatgtaagcccgtagccagtagacatgtcgtaggtggcattgcgcaatccccacacgggcaccgcgcagaagctgcacgctgattgtgcagaaaacgcaagatttaaggtggacatgggggaaaaacaaaatcaaacagagattttaggctcttgggacaaagtCCTAATTCACATTT-GGCCTGCGATGGGTCTATGGAGCCCGTATCCTGC--CCGTTTTCGCCTTTC-CGTGCG--GCGTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGAG-----------TTTGTTAAGCGAGAAGTT--ATAC----AAATTTAAA-AAAAA--ATCGTA-AGCCCGTAGCCCGTAGACA-TG----TC---------GTA-GGTGGCATTGCGCAA--TCCCCACA-------CGGGCA----CCGCGCGGAGGCAGCGC--GCTGATCGTGC
gi|9 : gCTAAAATCTTG----CGT-TTTCTGCACGATC-AGC---GC--------GC----TGCCTCCGCGCG-G-------TGCCCagaaaacgcaagattttaggtggacattggggcaaaaaaaatcgtacggagattgtaggctcttgggacagtcgcacagctatcacatgttgccgctcgctgccggttcagtaaccgtgaaatcgcacggatattgatcagtcatcccgcagcaaccgcacaacagcacggcggctgcacggtcaccgcaccatctccgcgcagcctctgcacgg
gi|9 : gcctaattcacatttggcctgcgatgggtctatggagcccgtatcctgcccgttttcgcctttccgtgcggcgtccgtgcggaggcaggaggcggccgtgagattttcgtacggattcacgggcgccgagtttgttaagcgagaagttatacaaatttaaaaaaaaatcgtaagcccgtagcccgtagacatgtcgtaggtggcattgcgcaatccccacacAAAAA---TCGTACGG-AGATTGTAGGCTC--TTGGGACAGTCGCACAGCgtggacattggggcaaaaaaaatcgtacggagattgtaggctcttgggacagtcgcacagctatcacatgttgccgctcgctgccggttcagtaaccgtgaaatcgcacggatattgatcagtcatcccgcagcaaccgcacaacagcacggcggctgcacggtcaccgcaccatctccgcgcagcctctgcacgg
gi|9 : gcctaattcacatttggcctgcgatgggtctatggagcccgtatcctgcccgttttcgcctttccgtgcggcgtccgtgcggaggcaggaggcggccgtgagattttcgtacggattcacgggcgccgagtttgttaagcgagaagttatacaaatttaaaaaaaaatcgtaagcccgtagcccgtagacatgtcgtaggtggcattgcgcaatccccacacgggcaccgcgcggaggcagcgcgctgatcgtgcagaaaacgcaagattttaggtggacattggggcaaaAGTCATC------CCGCAGCAACC--------------GCAC-----------AACAGCAC-GGCGGCT-GCACGGTC-ACCGCAC-CATCTCCGCGCAG-CCTCT-GCACGGtatcacatgttgccgctcgctgccggttcagtaaccgtgaaatcgcacggatattgatcagtcatcccgcagcaaccgcacaacagcacggcggctgcacggtcaccgcaccatctccgcgcagcctctgcacgg
Alignments
lowQualScore : 33 333333 4444444444444444444444444444444444 11 11 2222222222222222222222 111111111 111 1111 777777777777777777777777777777 111111
lowQualScore : 2 33 2 33 2 0 3 44 0 44 2 33 555 2 2 33 6666 3 3 77777 6666 3 0 0 11 3 44 111111 9999999999999999999999999999999999 3 11 11 5 1 0 66 0 7777777777777777777777 5 3 222222222 44 2 3 0 3 777 4444 77 000000000000000000000000000000 777 0 444444
lowQualScore : . .. . .. . . . .. . .. . .. ... . . .. .... . . ..... .... . . . .. . .. ...... .................................. . .. .. . . . .. . ...................... . . ......... .. . . . . ... .... .. .............................. ... . ......
lowQualScore : 9 99 9 99 9 8 6 22 5 22 9 99 000 9 9 99 5555 1 1 77777 5555 1 2 6 99 1 22 555555 8888888888888888888888888888888888 7 00 00 0 9 2 11 9 1111111111111111111111 7 3 444444444 22 9 1 2 1 555 9999 99 444444444444444444444444444444 333 1 333333
consensus : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTT--ATACAAATTT--G-AAAAA--ATCGTA---AGCCCGTAG-CCCGTAG-ACATGTCGTA--GGTGGCA----TTGC-GCAATCCCCGCA-CG-----G----GCA-CCGCGCGGAGGCCGCGCG-G-C--TGATCGTGCGNN---AATCATCTCCGC-GCAGCCTC----CGCAC----GG----AAACGGCACGGCGGCT--GCACGGT--CACCGCACCATCTCCGCGCGG-CCTCTGCACGGAA--GCCGCACG--GGC--TCCG-----T-GC--GATTTCCGTGCGGAGGCTGCG-G-------AGACTGCACGGCAA--CTGCACTGAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC-G--TA--GCCAC--------CC---------T--------CAAAAA---TCGTACGGAAAATCGTAGACCCATTT------ATCGCACGGCGCCCGGGGCAAATGTGA
Reference ( family-5232 ) : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTT--ATACAAATTT--G-AAAAA--ATCGTA---AGCCCGTAG-CCCGTAG-ACATGTCGTA--GGTGGCA----TTGC-GCAATCCCCGCA-CG-----G----GCA-CCGCGCGGAGGCCGCGCGGG-C--TGATCGTGCGCT---AATCATCTCCGC-GCAGCCTC----TGCAC----GG----AAACGGCACGGCGGCT--GCACGGT--CACCGCACCATCTCCGCGCGG-CCTCTGCACGGAA--GCCGCACG--GGC--TCCG-----T-GC--GATTTCCGTGCGGAGGCTGCG-G-------AGACTGCACGGCAA--CTGCACTGAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC-G--TA--GCCA---------CC---------T--------CAAAAA---TCGTACGGAAAATCGTAGACCCATTT------ATCGCACGGCGCCCGGGGCAAATGTGA
gi|1 : CCGAATTCACATTT-GACCTGCAATGGGTCTACGGAGCCCGTATCCTGC--CCATATTCCACTTTC-CGTGCG--GCATCTGTGCGGAGGCAGGAAGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTTGCGAGAAGTT--ATACAAATTT--G-AAAAA--ATCGTA---AGCCCGTAT-TCCGTAG-ACAAGTCATA--GGGGGTA----TTGG-GCAATCCCCGCA-CG-----G----GCA-CTACGCGGAGGCCGCTTGGGAC--T---CGGACACTCAAAATCATCTCCGC-GCAGCCTC----TGCAC----GG----AAGCCACACGG--GCTCAGTACGATTNNNNNNNNNNATCTCCGCGCAG-CCTCTGCACGGAA--GCCACACG--GGC--TCAG-----T-AC--GATTTCCGTGCGGAGGCTGCG-G-------AGACTGCACTGTAA--CTGCACTGTAATTGCACGA-TTTCCGTACAATCTCCGCACAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATATGCCGT-----------------------------C---------T--------CAAAAA---TCGTACGGAAAATCGTAGACCCGTTT------ATCGCACGGCTCCCGGGGCAAATGTGA
gi|10 : TTAGTTTAGCGAGAA-----------ATTT--G-AAAAA--ATCGTT---AGCCCGTAG-CCCGTAG-AAGTGTCGTA--GGTGG-A----TTGC-ACAATCCCCGCA-CG-----G----GCA-CCGCGAAGAGGCCGCGC--G-C--TGATCGTGCtc
gi|10 : A---TCGTACGG-AGATTATAGGCTC-TTTGGACA-ATCGCACGGTCCTCGagaaagatattaagcggatattaggggggaggggatcgtacggagattataggctctttggacaatcgcacggtcctcgcacaactatcgcaaggttgccactcgctgcctgtgcagtcagcgtgaaatcgcacagatactgagcagtcatcccgtggctttccttacaatctccgtgcagcttctgcaaggctttgcccctgccttgtcccgagaacccgtaccagaaattgcacgatgctcgtacataatgtaaatacatacgccgtagcctgtagccacctacaatgcctcaaaaatcgtagatccatttatcggacggt
gi|10 : ttagtttagcgagaaatttgaaaaaatcgttagcccgtagcccgtagaagtgtcgtaggtggattgcacaatccccgcacgggcaccgcgaagaggccgcgcgctgatcgtgcagaaagatattaagcggatattaggggggaggggCGCACGGTCCTC-GCAC--AACTATCGCAAG--GTT--GCCA-----C-TC--GCTGCCTGTGC--AGTCAGCGTG-------AAATCGCACAGATA--CTGAGCAGTCATCCCGTGGCTTTCCTTACAATCTCCGTGCAGCTTCTGCAAG-GCTTTGCCCCTGCCTTGTCC-CGAGAACCCGTACCAGAAATTGCACGATGCTCGTACATAATGTAAATACATACGCCGTAG---CCTG--TA--GCCA---------CC---------T----------ACAA---T-GCCTCAAAAATCGTAGATCCATTT------ATCGGACGGcacaactatcgcaaggttgccactcgctgcctgtgcagtcagcgtgaaatcgcacagatactgagcagtcatcccgtggctttccttacaatctccgtgcagcttctgcaaggctttgcccctgccttgtcccgagaacccgtaccagaaattgcacgatgctcgtacataatgtaaatacatacgccgtagcctgtagccacctacaatgcctcaaaaatcgtagatccatttatcggacggt
gi|11 : ttagtttagcgagaaatttgaaaaaatcgttagcccgtagcccgtagaagtgtcgtaggtggattgcacaatccccgcacgggcaccgcgaagaggccgcgcgctgatcgtgcagaaagatattaagcggatattaggggggaggggatcgtacggagattataggctctttggacaatCCTGATTCACATTT-GGCCTGCGATGGGTTTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCA--GCATCCATGCGGAGACGGGAGGCGGCCGTGAGATTTTCGTATTGATTCACGGGCACCGCGGCCTCTACGACTTTGTTTAGCGAGAAGTT--ATACAAATTT--G-AAAAA--ATCGTA---AGCCCGTAG-CCCGTAG-ACATGTCGTA--GGTGGCA----TTGC-GTAATCCCCGCA-CG-----G----GCA-TCGCGCGGAGGCCGCGC--G-C--TGATCGTGCt
gi|12 : tgatgACAGCACGGCGGCT--GCACGGT--CACCGCACCATCTCCGCGCAG-CCTCTGCACGGAA--GCCGCATG--GGC--TTCG-----T-AC--GATTTCAATGCGGAGGCTAAG-G-------AGACTGCACGGCAA--CTGCACTGAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTAAG-GCTTTGCCCCGGCCTGCCCC-CGAGGGTCCGTACGAGAAATCGTACGATGCTCGTACACAATGTGAACACATACGCCGTAGC--CC-G--TA--GTCACCTATGATGCC---------T--------CAAAAA---TCGTACGGGAAATCGTAGACCCATTT------ATCACACGGCGCCCGGGGCAAATGTGAagaaaacgcaagattttaggtggacattgggggggaaaaaaattggacggaggaattgtaggctcttgggacaatctcacaggcctcgcacagctatcgcaaggttgctgctcactgccggagcagtaaccgtgaaatcgcactgatattgagcagt
gi|13 : --GCCGCTCGC-AGC---CCG-----T-GC--AGTAACCGTGAAATGGC-ACG-G-------ATATTGAGCAGTCATCCCGCGC--AAACC-CACAG-CGGCCGCACCATGGCCGTGCAGCCTCTGTACG-GCTTTGCCTCGACCTACCCCCCGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCTTAT---CCTG--TA--GCCACCTACGATGCC---------T--------CAAAAA---TCGTACGGAAAATCGTAGACCCATTT------ATCGCGCGGCGCCCGGGGTAAATGTGAaccaggca
gi|14 : ctatcgcaaggttGACTGCACGGCAA--CTGCACTGAAATTGCACGA-TTTCCGTACAATCTTCGCGCAGCCTCTGTAAG-GCTTTGTCCCGG-CTGCCTC-CGAGGGCC----------------CGATGCTCGTACACGATGTAAACACATACGCCG-AGGC-CC-G--TA--GCCA---------CCTACGATGTTT--------CAAAAA---TCGTAAGGAAAATCGTAGACCCATTT------AGCGCACGGGGCCCGGGTCAAATGTGAac
gi|15 : cactggccaatggatgattgtatcgggaccgcgatttagttgttCCTAATTCACATTT-GGCCTGCGATTGGTCTACGGAGCCCGTATCATGT--CCGTATCCCGCTTTC-CGTGCG--GCCTCCGTG---------------------AGATTTTCGCACGGAAATACGGTAGCCGCGGCCTCTACGATTTTGTT-AGCGAAAAGTT--TTAAAAAACT--G-AAAAATAATCGT----------TAG-CCCATAC--CATGTCGTG--GGTGGCA----TTGC-ACAATCCCCGCA-CG-----G----GAA-CCTCGCGGAAGCCGCAC--G-C--TGATCGTGCaccaggcat
gi|16 : tg-------AGACTGCACTGCAA--CTGCAATATAATTGCATGA-TTTCCATACAACCTCTGCGCAGCCTCTGTACG-GCTTTGCCACGGCCTG-CCC-CGAGTGCTTGTACAAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC----TAATACCACCTACGATGCC---------T--------CTAAAA---TCGTACGGAAAATCGTAGACCCATTT------ATCACATGGCATCCGGGGCAAATGTGAagaaaacgc
gi|17 : CCTAATTAACATTT-GGCCTGCGATGGGTCTATGGAGCCCGTATCC-------------CCCTTCC-CGTGCG--G------------------------CCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGAATTTGTTAAGCCAGAACTT--ATACAAATTT--G-AAAAA--ATCGTA----------AG-CCCGTAG-ACATGTCGTA--GGTGGCA----TTTC-GCAATCCCCGCA-CG-----G----GCA-CCGCGCGaccaggca
gi|18 : tgATTTACATTTTGGCCTGCGATGGGTCTACGGAGCCCTTATCCTGCGGCC-----------TC-CGTGCG--GTCTCctgatcttgcagaaaatgct
gi|18 : tgctttGCGGTCTCTACGATTTTGTTTAGCGATAAGTT--ATACAAATTT--G-AAAAA--AATGTT---AGCCCGTAG-CCCGTAG-ACATGTCGTA--GGTGGCA----GTGC-GCAATCCCCGCA-TG-----G----GAA--------------GTGCGCG-C--TGATCGTGCtacgattttgtttagcgataagttatacaaatttgaaaaaaatgttagcccgtagcccgtagacatgtcgtaggtggcagtgcgcaatccccgcatgggaagtgcgcgctgatcgtgcagaaaacgcaagcttttaggtg
gi|19 : tgctttatttacattttggcctgcgatgggtctacggagcccttatcctgcggcctccgtTAATTCACAATG-GGCCTGCAATGAGGCTACGGAGCCCGTATCCTGC--CCGTATCCACCTTTCACCTACGATGCCTagaaaacgcaagcttttaggtg
gi|19 : ---------CC---------T---------AAAAA---TAGTACGGACAATCGTAGACC-ATTT------ATCGCACGGTGCCCGCGGCAAATGTGAaaaaatagtacggacaatcgtagaccatttatcgcacggtgcccgcggcaaatgtgaaccaag
gi|2 : taattcacaatgggcctgcaatgaggctacggagcccgtatcctgcccgtatccacctttcacctacgatgCCTAATTCACATTT-TGCCTGCAATGGGTCTAGGGAGCCCGTATCCTGT--CCGTATCCCCCTTTT-TGTGTA--GCCTCCGTACGGAGGCAGGAGGCGGCCGTGAGATTTTCCTACTGATTCACGGGCGCTACGGCCTCTACGATTTTGTTTAGCGAGAAGTT--AAGC-AATTT--T-AAAAA--ATCGTC---AGCCCGTAG-CCCGTAG-AC--GTCATA--Gaccaag
gi|2 : gtgAAAAA---TCTTACGG-AGATTGTAGGCTC--TTGGGACAATCGCACGGCtgatcatgcagataacgcaagatattagatgggcattggggaaaaaatcttacggagattgtaggctcttgggacaatcgcacggcccttgcacagccatcgcatttattttttcgtgatttccgtgcggatgctgcggagactgcacggcaactgcactgaaattgcatgatttccttaaaatctccgcgcagcctctgtacggctttgcaccggcctgtccccgagggcccgtaagagaaatcgcacgatgctcgtacacaatgtgctcacatacgccgtagcccgtagccacctacgatgcctaaaaatcgtatggaaaatcgtagacccatttatctcacggcgcccggggcaaatgttaacct
gi|2 : gtgcctaattcacattttgcctgcaatgggtctagggagcccgtatcctgtccgtatccccctttttgtgtagcctccgtacggaggcaggaggcggccgtgagattttcctactgattcacgggcgctacggcctctacgattttgtttagcgagaagttaagcaattttaaaaaatcgtcagcccgtagcccgtagacgtcatagtgatcatgcagataacgcaagatattagatgggcattggggaCGCACGG-CCCTTGCACAGCC--ATCGCATT--TAT--TTTT-----TCGT--GATTTCCGTGCGGATGCTGCG-G-------AGACTGCACGGCAA--CTGCACTGAAATTGCATGA-TTTCCTTAAAATCTCCGCGCAGCCTCTGTACG-GCTTTGCACCGGCCTGTCCC-CGAGGGCCCGTAAGAGAAATCGCACGATGCTCGTACACAATGTGCTCACATACGCCGTAGC--CC-G--TA--GCCA---------CC---------TACGATGCCTAAAAA---TCGTATGGAAAATCGTAGACCCATTT------ATCTCACGGCGCCCGGGGCAAATGTccttgcacagccatcgcatttattttttcgtgatttccgtgcggatgctgcggagactgcacggcaactgcactgaaattgcatgatttccttaaaatctccgcgcagcctctgtacggctttgcaccggcctgtccccgagggcccgtaagagaaatcgcacgatgctcgtacacaatgtgctcacatacgccgtagcccgtagccacctacgatgcctaaaaatcgtatggaaaatcgtagacccatttatctcacggcgcccggggcaaatgttaacct
gi|20 : gtgcctaattcacattttgcctgcaatgggtctagggagcccgtatcctgtccgtatccccctttttgtgtagcctccgtacggaggcaggaggcggccgtgagattttcctactgattcacgggcgctacggcctctacgattttgtttagcgagaagttaagcaattttaaaaaatcgtcagcccgtagcccgtagacgtcatagtgatcatgcagataacgcaagatattagatgggcattggggaaaaaatcttacggagattgtaggctcttgggacaatAAATCACACG-TGCTCGTACACAATGTGAACACATACGCCATAG---CCAG--TA--GCCA---------CC---------TATGATG--CCGAAATTTTTTTACGGAAAATCGTAGACCCATTT------ATTGCATGGCGCCCGGGGCAAATGTGAtaacct
gi|21 : TAATTCACATTT-GGCCTTCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATTCCCCTTTC-CGTGCG--GCCacgaggca
gi|3 : tCCTAATTCACATTT-GGCCTACACTGGGTCTACGG-----GTAACCTGC--CCGTATCCCACTTTC-CGTGCG--GCCTCCGTGTGGAGGCAGGAGGCGGCCGTGAGATTTTTGAACGGATTCACGCGCGCCGCGGCCTCTACGATTTTGT-----------TT--ATACAAATTT--G-AAAAA--ATCGTA---AGTTCGTGG-CCCGTAA-ACATGTCGTT--GATGGCA----TTGA-GCAATCCCCATGTCGTTGATG----GCA-AT-----GAGACCGGGC--G-C--TGATCGTGC
gi|3 : tgGCAA--CTGTACTGAAAGTGCACAA-TTCCCGTACAATCTCTGCGCAACCTCTGTACG-GCATTGCTCAGGCCTGCCCC--GGGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC-ACCTAC-GATG---------CC---------T--------AAAAAA----AGTACGAAAAATCGTATATCCATTT------ATCGCACGGCGCCCATGGCAAATGTGAaaaaaaacgcaagattttaggtggccattggggcaaaaacaatcgtacggagattgcaggctcttgtgacaatcgaacggctatcgcaactgtactgaaagtgcacaattcccgtacaatctctgcgcaacctctgtacggcattgctcaggcctgccccgggggcccgtacgagaaatcgcacgatgctcgtacacaatgtgaacacatacgccgtagccacctacgatgcctaaaaaaagtacgaaaaatcgtatatccatttatcgcacggcgcccatggcaaatgtgaatcaggca
gi|4 : tgcctaattcacatttggcctacactgggtctacgggtaacctgcccgtatcccactttccgtgcggcctccgtgtggaggcaggaggcggccgtgagatttttgaacggattcacgcgcgccgcggcctctacgattttgtttatacaaatttgaaaaaatcgtaagttcgtggcccgtaaacatgtcgttgatggcattgagcaatccccatgtcgttgatggcaatgagaccgggcgctgatcgtgcaaaaaaacgcaagattttaggtggccattggggcaaaaacaatcgtacggagattgcaggctcttgtgacaatcgaacggctatcCCTAATTCACATTT-GGCCTGCGATGGGTTTACGT-GCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCTTGTGGAGGCAGGAGGCGGCCGTGAGCTTTTCGTACGGATTCATGGGCACCTCGGCCTCTACGATTTTGTTAAGCGAGAAGTTTGA-ACAAATTT--G-AAAAA--ATCGTA---AGCCTGTAG-CCCGTAG-TCATGTCGTA--GGTGGCA----ATGT-GCAGCCCCCGCA-CA-----G----GCA-CTGCGCGGAGGTCACGCG---C--TGAT----CGTC---AAGAAACT--GC-A-AGATTTAAGGTGAACATTGGGTAAAAAACGGCACGGCGGCT--GCACGGT--CATCGCACCAGCTCCGCACAG-CCTCTGCACGGAA--GCCGCACG--G---------------------TTTCCGTGCGGAG-----------------AATGCACGGCAA--CTGCATTGAAATTGC----------GTACAATTTTCGCGTAGCCTCTGTACG-GCTTTGCCCCGGCCTGTCCC-CGAAGGCCCGTACGAGAAATTGCACGCTGCTTGCACACAATGTGAACACCTACGCCGTAG---CC-atcaggca
gi|5 : ataCCTAATTCACATTT-GGCCTGCGATGGGTCTACAGAGCCC-------------GTATCCCCCTTTC-CGTGCG--GCCTCCATGCAGAGGCAGGAGGTGACCGTGAGATTT--GTACGGATTCACGGGCA---------CTACGATTTTGTTAAGTG-GAAGcgt
gi|5 : ttatgGGAA--GCCGCACGCTGATCTTCCAGAAAAT-GCAAGATTTTAG-GTGAACATTGGG-GCTCAAAAAAACGGCACGGCGG--C-----------TACACGG-TCACCGCACCATCTCCATGCAGCCTCTGCACccgcacgctgatcttccagaaaatgcaagattttaggtgaacattggggctcaaaaaaacggcacggcggctacacggtcaccgcaccatctccatgcagcctctgcactgtagccacatgggctccatatgatttctgtgtggaggctgcggagactgcatgtctactgcactgaaattgcacaatttctgtacaatctccgacagtctctgtacagctttgcctcggccttcacccgagggccgtacaagaattggcatgatgctcatacacaatgtgaacacatgttgtagccaccgtaacgatgcctcaaaattcatatggaaaatcaaacatccctttatcacacagcgcccagggcaaatgtgaaccaggta
gi|5 : ttatgcctaattcacatttggcctgcgatgggtctacagagcccgtatccccctttccgtgcggcctccatgcagaggcaggaggtgaccgtgagatttgtacggattcacgggcactacgattttgttaagt----AAACGGCACGGCGGCT--ACACGGT--CACCGCACCATCTCCATGCAG-CCTCTGCACTGTA--GCCACATG--GGC--TCCA-----T-AT--GATTTCTGTGTGGAGGCTGCG-G-------AGACTGCATGTCTA--CTGCACTGAAATTGCACAA-TTTCTGTACAATCTCCG-ACAGTCTCTGTACA-GCTTTGCCTCGGCCTTCACC-CGAGGG-CCGTACAAGAATTGGCATGATGCTCATACACAATGTGAACACAT--GTTGTAGCCACC-G--TA--ACGATG-------CC---------T--------CAAAAT---TCATATGGAAAATCAAACATCCCTTT------ATCACACAGCGCCCAGGGCAAATGTGAtgtagccacatgggctccatatgatttctgtgtggaggctgcggagactgcatgtctactgcactgaaattgcacaatttctgtacaatctccgacagtctctgtacagctttgcctcggccttcacccgagggccgtacaagaattggcatgatgctcatacacaatgtgaacacatgttgtagccaccgtaacgatgcctcaaaattcatatggaaaatcaaacatccctttatcacacagcgcccagggcaaatgtgaaccaggta
gi|6 : ttatgcctaattcacatttggcctgcgatgggtctacagagcccgtatccccctttccgtgcggcctccatgcagaggcaggaggtgaccgtgagatttgtacggattcacgggcactacgattttgttaagtggaagccgcacgctgatcttccagaaaatgcaagattttaggtgaacattggggctcaaaaCTTATTCACATTT-GGCCTGCGATTGGTCTA---AGCCCGTATCCTGT--CGGTATCCCCCTT--------------TCAGTGTGGAGGCAGGAGGCTTTCGTGAGTTTTTTGT--------ACAGGCTCTGCGGCATCCATGATTTTGTTTAGGGAGAAG--------------------AAA--ATTGTA---AACCCATA------T---ACATGTCTTA--GGTGGCA----TTGC-GCAATCTCCGCT-C------G----GTA-CCACGCTGAGTCCGTGC--G-C--TGATCATGCaccaggta
gi|6 : CAGAGGCTGTGCGGA-----GATTGTACGAA---AATCAT-------GCAA--TC----CGCAC----GG----AAATCGTACGGCagaaaacacaagatttaagctggacatttgggacaaaaaaaaaattgtacagagattgtaggctcttgggacaatcacaaggttgccgtacgatttccgtgcggattgcatgattttcgtacaatctccgcacagcctctgtatgactatgccttggcctgcccccgtgggcccgtacaagaaaccgcataatgcccgcacacaatgtgaacatatatgttgtagccaactatgatgcttaaaaaatcgtacggaaaatcatagacccatttatcgcatggcgcccggggc
gi|6 : cttattcacatttggcctgcgattggtctaagcccgtatcctgtcggtatccccctttcagtgtggaggcaggaggctttcgtgagttttttgtacaggctctgcggcatccatgattttgtttagggagaagaaaattgtaaacccatatacatgtcttaggtggcattgcgcaatctccgctcggtaccacgctgagtccgtgcgctgatcatgcagaaaacacaagatttaagctggacatttgggacaaaaaaaaaattgtacagagattgtaggctcttgggacaatcacaaggttATTGCATGA-TTTTCGTACAATCTCCGCACAGCCTCTGTATG-ACTATGCCTTGGCCTGCCCC-CGTGGGCCCGTACAAGAAACCGCATAATGCCCGCACACAATGTGAACATATATGTTGTAG---CC-----A--ACTATGATG----CT---------T--------AAAAAA---TCGTACGGAAAATCATAGACCCATTT------ATCGCATGGCGCCCGGGGCtatgactatgccttggcctgcccccgtgggcccgtacaagaaaccgcataatgcccgcacacaatgtgaacatatatgttgtagccaactatgatgcttaaaaaatcgtacggaaaatcatagacccatttatcgcatggcgcccggggc
gi|7 : cttattcacatttggcctgcgattggtctaagcccgtatcctgtcggtatccccctttcagtgtggaggcaggaggctttcgtgagttttttgtacaggctctgcggcatccatgattttgtttagggagaagaaaattgtaaacccatatacatgtcttaggtggcattgcgcaatctccgctcggtaccacgctgagtccgtgcgctgatcatgcagaaaacacaagatttaagctggacatttgggacaaaaaaaaaattgtacagagattgtaggctcttgggacaatcacaaggttgccgtacgatttccgtgcggCCTCCATGTGGAGGCAGGAGGTGGCCGTGAGATTTTCGTACAGATTCAAGGGCACCAAG--------GATATTGTTTAGCGAGATTTT--ATACAAATCT--GTAAAAA--ATCGTA----------AG-CCCGTAG-ACATGTCGTA--GGTGGCA----TT-------------CA-TG-----G----GCA-ACGTGCGGAGGCTGCGT--G-C--TTATCATGC
gi|7 : CTGCG-A-------AGACTGCACGGCAA--CTGCACTGAAATTGCACAA-TTTCTGTACAATCTCCACGCAGCC---ATAAG-GCTTTGCCCCAGCCTGCCCA-CAAGGGCCAGTAAGAGAAATCGCATGATGCTCGTACATTATGTGAACACATACGCCGTAGT--CT-G--TA--GCCACCTATGATGCC---------T--------CAAAAAT--TCGTACGGAAAATAGTATA-CCATTT------ATCACACAGCGCCTGGGACAATTGTGAagaatacgcaagattttaggtagacattgggggaaaaaaaaatacggagattgtaggctcttgcacagctaccgcaaggttgccactcgctgcccctgcgaagactgcacggcaactgcactgaaattgcacaatttctgtacaatctccacgcagccataaggctttgccccagcctgcccacaagggccagtaagagaaatcgcatgatgctcgtacattatgtgaacacatacgccgtagtctgtagccacctatgatgcctcaaaaattcgtacggaaaatagtataccatttatcacacagcgcctgggacaattgtgaaccaggc
gi|8 : cctccatgtggaggcaggaggtggccgtgagattttcgtacagattcaagggcaccaaggatattgtttagcgagattttatacaaatctgtaaaaaatcgtaagcccgtagacatgtcgtaggtggcattcatgggcaacgtgcggaggctgcgtgcttatcatgcagaatacgcaagattttaggtagacattgggggaaaaaaaaatacggagattgtaggctcttgcacagctaccgcaaggttgccactcgctgcccCCTAATTCACATTT-GGCCTACGATGGGTCTACGGTGTCTGTATCCTGC--CTGTATCCTACTTTC-TGTGGG--GTCTCCATGTGG-------AGGCAG----GAGGCT-------------------GCTGCGACCTCTACGATTTCGTTTAGCGAGTAGTT--ATACAAATTT--G-AAAAA--AATGTA---AGCCCGTAG-CCAGTAG-ACATGTCGTA--GGTGGCA----TTGC-GCAATCCCCACA-CG-----G----GCA-CCGCGCAGAAGCTGCAC--G-C--TGATTGTGCaccaggc
gi|8 : gGCACGG-CCTTCGCACAGCT--ATTGCAAG--GGC--TCCA-----T-AT--GATTTCCATGCGAAG-----------------ACTGTACGGCAA--CTGCACTGAAA---------TTTC---ACGATTTC-----------TGTACAAGCT----------------C-CGATGGCCCGTTTGAGAAATCGCACAATGCTCGTACTCAATGTGAACACATACACCGTAG---CC-agaaaacgcaagatttaaggtggacatgggggaaaaacaaaatcaaacagagattttaggctcttgggacaaagtgcacggccttcgcacagctattgcaagggctccatatgatttccatgcgaagactgtacggcaactgcactgaaatttcacgatttctgtacaagctccgatggcccgtttgagaaatcgcacaatgctcgtactcaatgtgaacacatacaccgtagccacctacgatgcctaaaagattata
gi|9 : gcctaattcacatttggcctacgatgggtctacggtgtctgtatcctgcctgtatcctactttctgtggggtctccatgtggaggcaggaggctgctgcgacctctacgatttcgtttagcgagtagttatacaaatttgaaaaaaatgtaagcccgtagccagtagacatgtcgtaggtggcattgcgcaatccccacacgggcaccgcgcagaagctgcacgctgattgtgcagaaaacgcaagatttaaggtggacatgggggaaaaacaaaatcaaacagagattttaggctcttgggacaaagtCCTAATTCACATTT-GGCCTGCGATGGGTCTATGGAGCCCGTATCCTGC--CCGTTTTCGCCTTTC-CGTGCG--GCGTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGAG-----------TTTGTTAAGCGAGAAGTT--ATACAAATTTAAA-AAAAA--ATCGTA---AGCCCGTAG-CCCGTAG-ACATGTCGTA--GGTGGCA----TTGC-GCAATCCCCACA-CG-----G----GCA-CCGCGCGGAGGCAGCGC--G-C--TGATCGTGCacctacgatgcctaaaagattata
gi|9 : g-AAAAA--ATCGTACGGAGATTGTAGGCTCTTGGGACA-GTCGCACAGCTATCACATGTTGCCGC--TCGCTGC--CG-----GTTCAGTAACCGTG---AAATCGCACGGA-TATTGATC----------AGTCATC-CCGCAGCAACC-------GCAC-----------AACAGCACGGCGGCT--GCACGGT--CACCGCACCATCTCCGCGCAG-CCTCTGCACGGagaaaacgcaagattttaggtggacattggggcaaaaaaaatcgtacggagattgtaggctcttgggacagtcgcacagctatcacatgttgccgctcgctgccggttcagtaaccgtgaaatcgcacggatattgatcagtcatcccgcagcaaccgcacaacagcacggcggctgcacggtcaccgcaccatctccgcgcagcctctgcacgg
Alignments
lowQualScore : 11111111111 1 1111111 33333333333 1111 111 33333333333333333333 111111111111 1111111 777777777777777777777777 111111
lowQualScore : 2 33 2 33 2 0 3 0 33 33 2 33 777 1 2 2 33 2 5555 2 33 2 66666 5555 5 11111111111 3 0 9 444 2 7777777 5 00000000000 5 4444 333 5 0 99 99 1 4 0 5555 4 00000000000000000000 555555555555 0 33 2 555 2 0 3 8888888 44 666666666666666666666666 0 2 33 0 444444
lowQualScore : . .. . .. . . . . .. .. . .. ... . . . .. . .... . .. . ..... .... . ........... . . . ... . ....... . ........... . .... ... . . .. .. . . . .... . .................... ............ . .. . ... . . . ....... .. ........................ . . .. . ......
lowQualScore : 9 99 9 99 9 8 6 5 99 99 7 77 333 1 7 7 44 7 7777 7 77 5 22222 3333 0 22222222222 1 1 4 111 4 5555555 7 66666666666 2 2222 555 3 7 22 22 2 0 7 6666 0 55555555555555555555 999999999999 2 99 7 000 9 2 1 1111111 22 777777777777777777777777 1 5 44 1 333333
consensus : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTTAT--ACAAATTT--G-AAAAA--ATCGTA---AGCCCGTAG-CCCGTAG-ACATGTCGTA--GGTGGC-A----TTGC-GCAA--TCCCCGCA-CG-----G----GCA-CCGCG-----------CGGAGGCCGCGC-G---CTGA-TCGTGC-AGA---AAT-CA----TCTC-GCGCAGCNTCCG----CACGGAAACCGCACGGCGGCT--GCACGGT--CACCGCACCATCTCCGCGCGG-CCTCTGCACGGAA--GCCGCACG-GGCT--CCGT---------GC--GATTTCCGTGCGGAGGCTGCG-G----AGACTGCACGGCAA--CTGCACTGAAATCGCACGA-TTTCCGTACAATCTCCGCGC---AGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC-GTA--GCCAC--------C--------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTT------ATCGCACGGCGCCCGGGGCAAATGTGA
Reference ( family-5232 ) : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTTAT--ACAAATTT--G-AAAAA--ATCGTA---AGCCCGTAG-CCCGTAG-ACATGTCGTA--GGTGGC-A----TTGC-GCAA--TCCCCGCA-CG-----G----GCA-CCGCG-----------CGGAGGCCGCGCGG---CTGA-TCGTGC-GNN---AAT-CA----TCTCCGCGCAGCCTCCG----CACGGAAACGGCACGGCGGCT--GCACGGT--CACCGCACCATCTCCGCGCGG-CCTCTGCACGGAA--GCCGCACG-GGCT--CCGT---------GC--GATTTCCGTGCGGAGGCTGCG-G----AGACTGCACGGCAA--CTGCACTGAAATTGCACGA-TTTCCGTACAATCTCCGCGC---AGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC-GTA--GCCAC--------C--------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTT------ATCGCACGGCGCCCGGGGCAAATGTGA
gi|1 : CCGAATTCACATTT-GACCTGCAATGGGTCTACGGAGCCCGTATCCTGC--CCATATTCCACTTTC-CGTGCG--GCATCTGTGCGGAGGCAGGAAGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTTGCGAGAAGTTAT--ACAAATTT--G-AAAAA--ATCGTA---AGCCCGTAT-TCCGTAG-ACAAGTCATA--GGGGGT-A----TTGG-GCAA--TCCCCGCA-CG-----G----GCA-CTACG-----------CGGAGGCCGCTTGG-----GACTCGGAC-ACTCAAAAT-CA----TCTCCGCGCAGCCTCTG----CACGGAAGCCACACGG--GCTCAGTACGATTNNNNNNNNNNATCTCCGCGCAG-CCTCTGCACGGAA--GCCACACG-GGCT--CAGT---------AC--GATTTCCGTGCGGAGGCTGCG-G----AGACTGCACTGTAA--CTGCACTGTAATTGCACGA-TTTCCGTACAATCTCCGCAC---AGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATATGCCGT-----------------------------------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCGTTT------ATCGCACGGCTCCCGGGGCAAATGTGA
gi|10 : TTAGTTTAGCGAGAA-----------ATTT--G-AAAAA--ATCGTT---AGCCCGTAG-CCCGTAG-AAGTGTCGTA--GGTGG--A----TTGC-ACAA--TCCCCGCA-CG-----G----GCA-CCGCG-----------AAGAGGCCGCGC-G---CTGA-TCGTGC-AGA---AAtc
gi|10 : A-TCGT--ACGG-AGATTATAGGCTC-TTTGGACA-ATCGCACGGTCCTCGgatattaagcggatattaggggggaggggatcgtacggagattataggctctttggacaatcgcacggtcctcgcacaactatcgcaaggttgccactcgctgcctgtgcagtcagcgtgaaatcgcacagatactgagcagtcatcccgtggctttccttacaatctccgtgcagcttctgcaaggctttgcccctgccttgtcccgagaacccgtaccagaaattgcacgatgctcgtacataatgtaaatacatacgccgtagcctgtagccacctacaatgcctcaaaaatcgtagatccatttatcggacggt
gi|10 : ttagtttagcgagaaatttgaaaaaatcgttagcccgtagcccgtagaagtgtcgtaggtggattgcacaatccccgcacgggcaccgcgaagaggccgcgcgctgatcgtgcagaaagatattaagcggatattaggggggaggggCGCACGGTCCTC-GCAC--AACTATCGCAAG-GTTG--CCAC---------TC--GCTGCCTGTGC--AGTCAGCGTG----AAATCGCACAGATA--CTGAGCAGTCATCCCGTGGCTTTCCTTACAATCTCCGTGC---AGCTTCTGCAAG-GCTTTGCCCCTGCCTTGTCC-CGAGAACCCGTACCAGAAATTGCACGATGCTCGTACATAATGTAAATACATACGCCGTAG---CCTGTA--GCCAC--------C--------T------ACAA-----TGC--CTCAAAAATCGTAGATCCATTT------ATCGGACGGcacaactatcgcaaggttgccactcgctgcctgtgcagtcagcgtgaaatcgcacagatactgagcagtcatcccgtggctttccttacaatctccgtgcagcttctgcaaggctttgcccctgccttgtcccgagaacccgtaccagaaattgcacgatgctcgtacataatgtaaatacatacgccgtagcctgtagccacctacaatgcctcaaaaatcgtagatccatttatcggacggt
gi|11 : ttagtttagcgagaaatttgaaaaaatcgttagcccgtagcccgtagaagtgtcgtaggtggattgcacaatccccgcacgggcaccgcgaagaggccgcgcgctgatcgtgcagaaagatattaagcggatattaggggggaggggatcgtacggagattataggctctttggacaatCCTGATTCACATTT-GGCCTGCGATGGGTTTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCA--GCATCCATGCGGAGACGGGAGGCGGCCGTGAGATTTTCGTATTGATTCACGGGCACCGCGGCCTCTACGACTTTGTTTAGCGAGAAGTTAT--ACAAATTT--G-AAAAA--ATCGTA---AGCCCGTAG-CCCGTAG-ACATGTCGTA--GGTGGC-A----TTGC-GTAA--TCCCCGCA-CG-----G----GCA-TCGCG-----------CGGAGGCCGCGC-G---CTGA-TCGTGC-AGA---AAt
gi|12 : tgatgACAGCACGGCGGCT--GCACGGT--CACCGCACCATCTCCGCGCAG-CCTCTGCACGGAA--GCCGCATG-GGCT--TCGT---------AC--GATTTCAATGCGGAGGCTAAG-G----AGACTGCACGGCAA--CTGCACTGAAATTGCACGA-TTTCCGTACAATCTCCGCGC---AGCCTCTGTAAG-GCTTTGCCCCGGCCTGCCCC-CGAGGGTCCGTACGAGAAATCGTACGATGCTCGTACACAATGTGAACACATACGCCGTAGC--CC-GTA--GTCACCTATGATGC--------C------TCAAAAA-TCGT--ACGGGAAATCGTAGACCCATTT------ATCACACGGCGCCCGGGGCAAATGTGAacgcaagattttaggtggacattgggggggaaaaaaattggacggaggaattgtaggctcttgggacaatctcacaggcctcgcacagctatcgcaaggttgctgctcactgccggagcagtaaccgtgaaatcgcactgatattgagcagt
gi|13 : --GCCGCTCGCAGC---CCGT---------GC--AGTAACCGTGAAATGGC-ACG-G----ATATTGAGCAGTCATCCCGCGC--AAACC-CACAG-CGGCCGCACCATGGCCGTGC---AGCCTCTGTACG-GCTTTGCCTCGACCTACCCCCCGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCTTAT---CCTGTA--GCCACCTACGATGC--------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTT------ATCGCGCGGCGCCCGGGGTAAATGTGAaccaggca
gi|14 : ctatcgcaaggttGACTGCACGGCAA--CTGCACTGAAATTGCACGA-TTTCCGTACAATCTTCGCGC---AGCCTCTGTAAG-GCTTTGTCCCGG-CTGCCTC-CGAGGGCC----------------CGATGCTCGTACACGATGTAAACACATACGCCG-AGGC-CC-GTA--GCCAC--------CTACGATGTT------TCAAAAA-TCGT--AAGGAAAATCGTAGACCCATTT------AGCGCACGGGGCCCGGGTCAAATGTGAac
gi|15 : cactggccaatggatgattgtatcgggaccgcgatttagttgttCCTAATTCACATTT-GGCCTGCGATTGGTCTACGGAGCCCGTATCATGT--CCGTATCCCGCTTTC-CGTGCG--GCCTCCGTG---------------------AGATTTTCGCACGGAAATACGGTAGCCGCGGCCTCTACGATTTTGTT-AGCGAAAAGTTTT--AAAAAACT--G-AAAAATAATCGT----------TAG-CCCATAC--CATGTCGTG--GGTGGC-A----TTGC-ACAA--TCCCCGCA-CG-----G----GAA-CCTCG-----------CGGAAGCCGCAC-G---CTGA-TCGTGC-AGA---AAaccaggcat
gi|16 : tg----AGACTGCACTGCAA--CTGCAATATAATTGCATGA-TTTCCATACAACCTCTGCGC---AGCCTCTGTACG-GCTTTGCCACGGCCTG-CCC-CGAGTGCTTGTACAAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC--TAATACCACCTACGATGC--------C------TCTAAAA-TCGT--ACGGAAAATCGTAGACCCATTT------ATCACATGGCATCCGGGGCAAATGTGAacgc
gi|17 : CCTAATTAACATTT-GGCCTGCGATGGGTCTATGGAGCCCGTATCC-------------CCCTTCC-CGTGCG--G------------------------CCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGAATTTGTTAAGCCAGAACTTAT--ACAAATTT--G-AAAAA--ATCGTA----------AG-CCCGTAG-ACATGTCGTA--GGTGGC-A----TTTC-GCAA--TCCCCGCA-CG-----G----GCA-CCGCG-----------C------------G---CTGA-TCTTGC-AGA---AAaccaggca
gi|18 : tgATTTACATTTTGGCCTGCGATGGGTCTACGGAGCCCTTATCCTGCGGCC-----------TC-CGTGCG--GTCTCatgct
gi|18 : tgctttGCGGTCTCTACGATTTTGTTTAGCGATAAGTTAT--ACAAATTT--G-AAAAA--AATGTT---AGCCCGTAG-CCCGTAG-ACATGTCGTA--GGTGGC-A----GTGC-GCAA--TCCCCGCA-TG-----G----GAA-GTGCG-----------C------------G---CTGA-TCGTGC-AGA---AAtacgattttgtttagcgataagttatacaaatttgaaaaaaatgttagcccgtagcccgtagacatgtcgtaggtggcagtgcgcaatccccgcatgggaagtgcgcgctgatcgtgcagaaaacgcaagcttttaggtg
gi|19 : tgctttatttacattttggcctgcgatgggtctacggagcccttatcctgcggcctccgtTAATTCACAATG-GGCCTGCAATGAGGCTACGGAGCCCGTATCCTGC--CCGTATCCACCTTTCACCTACGATGCCTacgcaagcttttaggtg
gi|19 : --------C--------C------T-AAAAA-TAGT--ACGGACAATCGTAGACC-ATTT------ATCGCACGGTGCCCGCGGCAAATGTGAaaaaatagtacggacaatcgtagaccatttatcgcacggtgcccgcggcaaatgtgaaccaag
gi|2 : taattcacaatgggcctgcaatgaggctacggagcccgtatcctgcccgtatccacctttcacctacgatgCCTAATTCACATTT-TGCCTGCAATGGGTCTAGGGAGCCCGTATCCTGT--CCGTATCCCCCTTTT-TGTGTA--GCCTCCGTACGGAGGCAGGAGGCGGCCGTGAGATTTTCCTACTGATTCACGGGCGCTACGGCCTCTACGATTTTGTTTAGCGAGAAGTTAA--GC-AATTT--T-AAAAA--ATCGTC---AGCCCGTAG-CCCGTAG-AC--GTCATA--Gaccaag
gi|2 : gtgAAAAA-TCTT--ACGG-AGATTGTAGGCTC--TTGGGACAATCGCACGGCtgatcatgcagataacgcaagatattagatgggcattggggaaaaaatcttacggagattgtaggctcttgggacaatcgcacggcccttgcacagccatcgcatttattttttcgtgatttccgtgcggatgctgcggagactgcacggcaactgcactgaaattgcatgatttccttaaaatctccgcgcagcctctgtacggctttgcaccggcctgtccccgagggcccgtaagagaaatcgcacgatgctcgtacacaatgtgctcacatacgccgtagcccgtagccacctacgatgcctaaaaatcgtatggaaaatcgtagacccatttatctcacggcgcccggggcaaatgttaacct
gi|2 : gtgcctaattcacattttgcctgcaatgggtctagggagcccgtatcctgtccgtatccccctttttgtgtagcctccgtacggaggcaggaggcggccgtgagattttcctactgattcacgggcgctacggcctctacgattttgtttagcgagaagttaagcaattttaaaaaatcgtcagcccgtagcccgtagacgtcatagtgatcatgcagataacgcaagatattagatgggcattggggaCGCACGG-CCCTTGCACAGCC--ATCGCATT-TATT--TTTTC--------GT--GATTTCCGTGCGGATGCTGCG-G----AGACTGCACGGCAA--CTGCACTGAAATTGCATGA-TTTCCTTAAAATCTCCGCGC---AGCCTCTGTACG-GCTTTGCACCGGCCTGTCCC-CGAGGGCCCGTAAGAGAAATCGCACGATGCTCGTACACAATGTGCTCACATACGCCGTAGC--CC-GTA--GCCAC--------CTACGATG-C------CTAAAAA-TCGT--ATGGAAAATCGTAGACCCATTT------ATCTCACGGCGCCCGGGGCAAATGTccttgcacagccatcgcatttattttttcgtgatttccgtgcggatgctgcggagactgcacggcaactgcactgaaattgcatgatttccttaaaatctccgcgcagcctctgtacggctttgcaccggcctgtccccgagggcccgtaagagaaatcgcacgatgctcgtacacaatgtgctcacatacgccgtagcccgtagccacctacgatgcctaaaaatcgtatggaaaatcgtagacccatttatctcacggcgcccggggcaaatgttaacct
gi|20 : gtgcctaattcacattttgcctgcaatgggtctagggagcccgtatcctgtccgtatccccctttttgtgtagcctccgtacggaggcaggaggcggccgtgagattttcctactgattcacgggcgctacggcctctacgattttgtttagcgagaagttaagcaattttaaaaaatcgtcagcccgtagcccgtagacgtcatagtgatcatgcagataacgcaagatattagatgggcattggggaaaaaatcttacggagattgtaggctcttgggacaatAAATCACACG-TGCTCGTACACAATGTGAACACATACGCCATAG---CCAGTA--GCCAC--------C--------TATGATGCCGAAAT-TTTTTTACGGAAAATCGTAGACCCATTT------ATTGCATGGCGCCCGGGGCAAATGTGAtaacct
gi|21 : TAATTCACATTT-GGCCTTCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATTCCCCTTTC-CGTGCG--GCCacgaggca
gi|3 : tCCTAATTCACATTT-GGCCTACACTGGGTCTACGG-----GTAACCTGC--CCGTATCCCACTTTC-CGTGCG--GCCTCCGTGTGGAGGCAGGAGGCGGCCGTGAGATTTTTGAACGGATTCACGCGCGCCGCGGCCTCTACGATTTTGT-----------TTAT--ACAAATTT--G-AAAAA--ATCGTA---AGTTCGTGG-CCCGTAA-ACATGTCGTT--GATGGC-A----TTGA-GCAA--TCCCCATGTCGTTGATG----GCA-AT----------------GAGACCGGGC-G---CTGA-TCGTGC-AAA---AA
gi|3 : tgTA--GGTGGCCA----TTGG-G----------GCA-AA-----A----ACAATCGTA-----------CGGAGATTGCA-GG---CT----CTTGT-GAC---AAT-C----------GAACGGCTATCG----CA-----ACTGTACTGAAAGT--GCACAAT--TCCCGTACAATCTCTGCGCAA-CCTCTGTACGGCA---TTGCTCA-GGCC-----T---------GC-------CC---CGGGGGC-------------CCGTACGA------------GAAATCGCACGA-TGCTCGTACAaacgcaagattttaggtggccattggggcaaaaacaatcgtacggagattgcaggctcttgtgacaatcgaacggctatcgcaactgtactgaaagtgcacaattcccgtacaatctctgcgcaacctctgtacggcattgctcaggcctgccccgggggcccgtacgagaaatcgcacgatgctcgtacacaatgtgaacacatacgccgtagccacctacgatgcctaaaaaaagtacgaaaaatcgtatatccatttatcgcacggcgcccatggcaaatgtgaatcaggca
gi|3 : tgcctaattcacatttggcctacactgggtctacgggtaacctgcccgtatcccactttccgtgcggcctccgtgtggaggcaggaggcggccgtgagatttttgaacggattcacgcgcgccgcggcctctacgattttgtttatacaaatttgaaaaaatcgtaagttcgtggcccgtaaacatgtcgttgatggcattgagcaatccccatgtcgttgatggcaatgagaccgggcgctgatcgtgcaaaaaaacgcaagatttGCAA--CTGTACTGAAAGTGCACAA-TTCCCGTACAATCTCTGCGC---AACCTCTGTACG-GCATTGCTCAGGCCTGCCCC--GGGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC---A--CCTACGATG----C--------C------TAAAAAA--AGT--ACGAAAAATCGTATATCCATTT------ATCGCACGGCGCCCATGGCAAATGTGAcaatgtgaacacatacgccgtagccacctacgatgcctaaaaaaagtacgaaaaatcgtatatccatttatcgcacggcgcccatggcaaatgtgaatcaggca
gi|4 : tgcctaattcacatttggcctacactgggtctacgggtaacctgcccgtatcccactttccgtgcggcctccgtgtggaggcaggaggcggccgtgagatttttgaacggattcacgcgcgccgcggcctctacgattttgtttatacaaatttgaaaaaatcgtaagttcgtggcccgtaaacatgtcgttgatggcattgagcaatccccatgtcgttgatggcaatgagaccgggcgctgatcgtgcaaaaaaacgcaagattttaggtggccattggggcaaaaacaatcgtacggagattgcaggctcttgtgacaatcgaacggctatcCCTAATTCACATTT-GGCCTGCGATGGGTTTACGT-GCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCTTGTGGAGGCAGGAGGCGGCCGTGAGCTTTTCGTACGGATTCATGGGCACCTCGGCCTCTACGATTTTGTTAAGCGAGAAGTT-TGAACAAATTT--G-AAAAA--ATCGTA---AGCCTGTAG-CCCGTAG-TCATGTCGTA--GGTGGC-A----ATGT-GCAG--CCCCCGCA-CA-----G----GCA-CTGCG-----------CGGAGGTCACGC-G---CTGA-TCGTatcaggca
gi|4 : ataCCCCGCACAG-GCACTGCGCGGAG--GTC--ACG-CGCTGATCGTCAAGAAACTGCAAGATTTAAG-GTGAACATTG-G-GTAAAAAACGGCACGGCGG--CTGCACGGTCATCGCACCA-GCTCCGCACAGCCTCTGCACGGAAGCC---GCACG-GTTTcaagaaactgcaagatttaaggtgaacattgggtaaaaaacggcacggcggctgcacggtcatcgcaccagctccgcacagcctctgcacggaagccgcacggtttccgtgcggagaatgcacggcaactgcattgaaattgcgtacaattttcgcgtagcctctgtacggctttgccccggcctgtccccgaaggcccgtacgagaaattgcacgctgcttgcacacaatgtgaacacctacgccgtagcccgt
gi|4 : atacctaattcacatttggcctgcgatgggtttacgtgcccgtatcctgcccgtatccccctttccgtgcggcctccttgtggaggcaggaggcggccgtgagcttttcgtacggattcatgggcacctcggcctctacgattttgttaagcgagaagtttgaacaaatttgaaaaaatcgtaagcctgtagcccgtagtcatgtcgtaggtggcaatgtgcagcAAACGGCACGGCGGCT--GCACGGT--CATCGCACCAGCTCCGCACAG-CCTCTGCACGGAA--GCCGCACG-G------------------------TTTCCGTGCGGAG--------------AATGCACGGCAA--CTGCATTGAAATTGC----------GTACAATTTTCGCGT---AGCCTCTGTACG-GCTTTGCCCCGGCCTGTCCC-CGAAGGCCCGTACGAGAAATTGCACGCTGCTTGCACACAATGTGAACACCTACGCCGTAG---CC-ccgtgcggagaatgcacggcaactgcattgaaattgcgtacaattttcgcgtagcctctgtacggctttgccccggcctgtccccgaaggcccgtacgagaaattgcacgctgcttgcacacaatgtgaacacctacgccgtagcccgt
gi|5 : atacctaattcacatttggcctgcgatgggtttacgtgcccgtatcctgcccgtatccccctttccgtgcggcctccttgtggaggcaggaggcggccgtgagcttttcgtacggattcatgggcacctcggcctctacgattttgttaagcgagaagtttgaacaaatttgaaaaaatcgtaagcctgtagcccgtagtcatgtcgtaggtggcaatgtgcagcccccgcacaggcactgcgcggaggtcacgcgctgatcgtcaagaaactgcaagatttaaggtgaacattgggtaaaCCTAATTCACATTT-GGCCTGCGATGGGTCTACAGAGCCC-------------GTATCCCCCTTTC-CGTGCG--GCCTCCATGCAGAGGCAGGAGGTGACCGTGAGATTT--GTACGGATTCACGGGCA---------CTACGATTTTGTTAAGTG-GAAGcgt
gi|5 : ttatgCA-CG-----G----GCA-CTACGATTTTGTTAAGTGGAAGCCGCACG----CTGA-TCTTCCAGAA---AATGCAAGATTTTAGGTG-AACATTGGGGCTCAAAAAAACGGCACGGCGGCT--ACACGGT--CACCGCACCATCTCCATGCAG-CCTCTGCACTGTA--GCCACATG-GGCT--CCAT---------AT--GATTTCTGTGTGGAGGCTGCG-G----AGACTGCATGTCTA--CTGCACTGAAATTGCACAA-TTTCTGTACAATCTCCG-AC---AGTCTCTGTACA-GCTTTGCCTCGGCCTTCACC-CGAGGG-CCGTACAAGAATTGGCATGATGCTCATACACAATGTGAACACAT--GTTGTAGCCACC-GTA--ACGATG-------C--------C------TCAAAAT-TCAT--ATGGAAAATCAAACATCCCTTT------ATCACACAGCGCCCAGGGCAAATGTGAccgcacgctgatcttccagaaaatgcaagattttaggtgaacattggggctcaaaaaaacggcacggcggctacacggtcaccgcaccatctccatgcagcctctgcactgtagccacatgggctccatatgatttctgtgtggaggctgcggagactgcatgtctactgcactgaaattgcacaatttctgtacaatctccgacagtctctgtacagctttgcctcggccttcacccgagggccgtacaagaattggcatgatgctcatacacaatgtgaacacatgttgtagccaccgtaacgatgcctcaaaattcatatggaaaatcaaacatccctttatcacacagcgcccagggcaaatgtgaaccaggta
gi|6 : ttatgcctaattcacatttggcctgcgatgggtctacagagcccgtatccccctttccgtgcggcctccatgcagaggcaggaggtgaccgtgagatttgtacggattCTTATTCACATTT-GGCCTGCGATTGGTCTA---AGCCCGTATCCTGT--CGGTATCCCCCTT--------------TCAGTGTGGAGGCAGGAGGCTTTCGTGAGTTTTTTGT--------ACAGGCTCTGCGGCATCCATGATTTTGTTTAGGGAGAAG--------------------AAA--ATTGTA---AACCCATA------T---ACATGTCTTA--GGTGGC-A----TTGC-GCAA--TCTCCGCT-C------G----GTA-CCACG-----------CTGAGTCCGTGC-G---CTGA-TCATGC-AGA---AAA-CA----accaggta
gi|6 : --ACAAA-----A-AAAAA--ATTGTAC--AG-----AG-ATTGTAG-GC---TCTTG--GG--AC-A----AT-C-ACAAGGTTGCCGTA-CG-----A----TTT-CCGTG-----------CGGA--TTGCATGA---TTT--TCGTAC-A----------A----TCTCCGCACAGCCTCTG----TATGcaagatttaagctggacatttgggacaaaaaaaaaattgtacagagattgtaggctcttgggacaatcacaaggttgccgtacgatttccgtgcggattgcatgattttcgtacaatctccgcacagcctctgtatgactatgccttggcctgcccccgtgggcccgtacaagaaaccgcataatgcccgcacacaatgtgaacatatatgttgtagccaactatgatgcttaaaaaatcgtacggaaaatcatagacccatttatcgcatggcgcccggggc
gi|6 : cttattcacatttggcctgcgattggtctaagcccgtatcctgtcggtatccccctttcagtgtggaggcaggaggctttcgtgagttttttgtacaggctctgcggcatccatgattttgtttagggagaagaaaattgtaaacccatatacatgtcttaggtggcattgcgcaatctccgctcggtaccacgctgagtccgtgcgctgatcatgcagaaaacacaagatttaagctggacatttggg-----------CAGAGGCTGTGCGG---A-GA-TTGTAC-GAA---AAT-CA----T------GCAA--TCCG----CACGGAAATCGTACGGCactatgccttggcctgcccccgtgggcccgtacaagaaaccgcataatgcccgcacacaatgtgaacatatatgttgtagccaactatgatgcttaaaaaatcgtacggaaaatcatagacccatttatcgcatggcgcccggggc
gi|6 : cttattcacatttggcctgcgattggtctaagcccgtatcctgtcggtatccccctttcagtgtggaggcaggaggctttcgtgagttttttgtacaggctctgcggcatccatgattttgtttagggagaagaaaattgtaaacccatatacatgtcttaggtggcattgcgcaatctccgctcggtaccacgctgagtccgtgcgctgatcatgcagaaaacacaagatttaagctggacatttgggacaaaaaaaaaattgtacagagattgtaggctcttgggacaatcacaaggttATTGCATGA-TTTTCGTACAATCTCCGCAC---AGCCTCTGTATG-ACTATGCCTTGGCCTGCCCC-CGTGGGCCCGTACAAGAAACCGCATAATGCCCGCACACAATGTGAACATATATGTTGTAG---CC---A--ACTATGATG----C--------T------TAAAAAA-TCGT--ACGGAAAATCATAGACCCATTT------ATCGCATGGCGCCCGGGGCtatgactatgccttggcctgcccccgtgggcccgtacaagaaaccgcataatgcccgcacacaatgtgaacatatatgttgtagccaactatgatgcttaaaaaatcgtacggaaaatcatagacccatttatcgcatggcgcccggggc
gi|7 : cttattcacatttggcctgcgattggtctaagcccgtatcctgtcggtatccccctttcagtgtggaggcaggaggctttcgtgagttttttgtacaggctctgcggcatccatgattttgtttagggagaagaaaattgtaaacccatatacatgtcttaggtggcattgcgcaatctccgctcggtaccacgctgagtccgtgcgctgatcatgcagaaaacacaagatttaagctggacatttgggacaaaaaaaaaattgtacagagattgtaggctcttgggacaatcacaaggttgccgtacgatttccgtgcggCCTCCATGTGGAGGCAGGAGGTGGCCGTGAGATTTTCGTACAGATTCAAGGGCACCAAG--------GATATTGTTTAGCGAGATTTTAT--ACAAATCT--GTAAAAA--ATCGTA----------AG-CCCGTAG-ACATGTCGTA--GGTGGC-A----TT---------------CA-TG-----G----GCA-ACGTG-----------CGGAGGCTGCGT-G---CTTA-TCATGC-AGA---A
gi|7 : CTGCG-A----AGACTGCACGGCAA--CTGCACTGAAATTGCACAA-TTTCTGTACAATCTCCACGC---AGCC---ATAAG-GCTTTGCCCCAGCCTGCCCA-CAAGGGCCAGTAAGAGAAATCGCATGATGCTCGTACATTATGTGAACACATACGCCGTAGT--CT-GTA--GCCACCTATGATGC--------C------TCAAAAATTCGT--ACGGAAAATAGTATA-CCATTT------ATCACACAGCGCCTGGGACAATTGTGAtacgcaagattttaggtagacattgggggaaaaaaaaatacggagattgtaggctcttgcacagctaccgcaaggttgccactcgctgcccctgcgaagactgcacggcaactgcactgaaattgcacaatttctgtacaatctccacgcagccataaggctttgccccagcctgcccacaagggccagtaagagaaatcgcatgatgctcgtacattatgtgaacacatacgccgtagtctgtagccacctatgatgcctcaaaaattcgtacggaaaatagtataccatttatcacacagcgcctgggacaattgtgaaccaggc
gi|8 : cctccatgtggaggcaggaggtggccgtgagattttcgtacagattcaagggcaccaaggatattgtttagcgagattttatacaaatctgtaaaaaatcgtaagcccgtagacatgtcgtaggtggcattcatgggcaacgtgcggaggctgcgtgcttatcatgcagaatacgcaagattttaggtagacattgggggaaaaaaaaatacggagattgtaggctcttgcacagctaccgcaaggttgccactcgctgcccCCTAATTCACATTT-GGCCTACGATGGGTCTACGGTGTCTGTATCCTGC--CTGTATCCTACTTTC-TGTGGG--GTCTCCATGTGG-------AGGCAG----GAGGCT-------------------GCTGCGACCTCTACGATTTCGTTTAGCGAGTAGTTAT--ACAAATTT--G-AAAAA--AATGTA---AGCCCGTAG-CCAGTAG-ACATGTCGTA--GGTGGC-A----TTGC-GCAA--TCCCCACA-CG-----G----GCA-CCGCG-----------CAGAAGCTGCAC-G---CTGA-TTGTGC-AGA---AAaccaggc
gi|8 : gGCACGG-CCTTCGCACAGCT--ATTGCAAG-GGCT--CCAT---------AT--GATTTCCATGCGAAG--------------ACTGTACGGCAA--CTGCACTGAAA---------TTTC---ACGATTTC--------------TGTACAAGCT----------------C-CGATGGCCCGTTTGAGAAATCGCACAATGCTCGTACTCAATGTGAACACATACACCGTAG---CC---A--CCTACGATG----C--------C------TAAAAGA-TTAT--Aacgcaagatttaaggtggacatgggggaaaaacaaaatcaaacagagattttaggctcttgggacaaagtgcacggccttcgcacagctattgcaagggctccatatgatttccatgcgaagactgtacggcaactgcactgaaatttcacgatttctgtacaagctccgatggcccgtttgagaaatcgcacaatgctcgtactcaatgtgaacacatacaccgtagccacctacgatgcctaaaagattata
gi|9 : gcctaattcacatttggcctacgatgggtctacggtgtctgtatcctgcctgtatcctactttctgtggggtctccatgtggaggcaggaggctgctgcgacctctacgatttcgtttagcgagtagttatacaaatttgaaaaaaatgtaagcccgtagccagtagacatgtcgtaggtggcattgcgcaatccccacacgggcaccgcgcagaagctgcacgctgattgtgcagaaaacgcaagatttaaggtggacatgggggaaaaacaaaatcaaacagagattttaggctcttgggacaaagtCCTAATTCACATTT-GGCCTGCGATGGGTCTATGGAGCCCGTATCCTGC--CCGTTTTCGCCTTTC-CGTGCG--GCGTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGAG-----------TTTGTTAAGCGAGAAGTTAT--ACAAATTTAAA-AAAAA--ATCGTA---AGCCCGTAG-CCCGTAG-ACATGTCGTA--GGTGGC-A----TTGC-GCAA--TCCCCACA-CG-----G----GCA-CCGCG-----------CGGAGGCAGCGC-G---CTGA-TCGTGC-AGA---AA
gi|9 : g-AAAAA--ATCGTACGGAGATTGTAGGCTCTTGGGACA-GTCGCACAGCTATC-ACATGTTGCCGC----TCGCTGC--CG-----GTTCAGTAACCGTG--------------AAATCGCACGGATATTGA-TC-----------AGT-CA----TCCC---GCAGCAACCG----CAC---AACAGCACGGCGGCT--GCACGGT--CACCGCACCATCTCCGCGCAG-CCTCTGCACGGacgcaagattttaggtggacattggggcaaaaaaaatcgtacggagattgtaggctcttgggacagtcgcacagctatcacatgttgccgctcgctgccggttcagtaaccgtgaaatcgcacggatattgatcagtcatcccgcagcaaccgcacaacagcacggcggctgcacggtcaccgcaccatctccgcgcagcctctgcacgg
Alignments
lowQualScore : 111111111111 77777777777777777777777777777777777777777777 11111 11111111111 1111111 777777777777777777777777
lowQualScore : 2 33 2 33 2 0 3 0 44 44 2 33 555 2 2 33 6666 3 2 77777 6666 3333 333333333333 2 33 444 66666666666666666666666666666666666666666666 5 777 8888 1 66 66 1 5 1 4 4 11111 4 0 66 0 55555 0 88 77777777777 1 666 4 3 7777 0 44 3 3 2 3 0 3 8888888 44 666666666666666666666666 0 2 33 888888
lowQualScore : . .. . .. . . . . .. .. . .. ... . . .. .... . . ..... .... .... ............ . .. ... ............................................ . ... .... . .. .. . . . . . ..... . . .. . ..... . .. ........... . ... . . .... . .. . . . . . . ....... .. ........................ . . .. ......
lowQualScore : 9 99 9 99 9 8 6 5 22 22 9 99 000 9 9 99 5555 1 9 11111 1111 4444 777777777777 7 77 777 11111111111111111111111111111111111111111111 0 888 9999 1 99 99 6 0 4 4 4 11111 7 2 11 9 22222 9 99 44444444444 1 444 0 3 1111 6 22 1 2 9 1 2 1 1111111 22 777777777777777777777777 1 7 77 222222
consensus : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTTAT--ACAAATTT--G-AAAAA--ATCGTA---AGCCCGTAG-CCCGTAG-ACATGTCGTA--GGTGGCA----TTGC-GCAATCCCCGCA-CG-----G----GCA-CCGCG-----------CGGAGGCCGCGCGCTGA-TCGTG--CA---GAAA---N-C-----A---TTT--C--GCGCAG-CATCGG----CGCGGA-A---AC---CGCACGGCGGCT--GCACGGT--CACCGC-ACCATCTCCGCGCGG-CC-T-----CTGCACGGAA--GCCGCACG-GGCTCCGT-ACGATTTCCGTGC-------GGA-GGC--TGCG-GAGA-CTGCAC----GGCAA--CTGCACT-GAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC-GTA--GCCAC--------C--------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTT------ATCGCACGGCGCCCGGGGCAAATGTGA
Reference ( family-5232 ) : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTTAT--ACAAATTT--G-AAAAA--ATCGTA---AGCCCGTAG-CCCGTAG-ACATGTCGTA--GGTGGCA----TTGC-GCAATCCCCGCA-CG-----G----GCA-CCGCG-----------CGGAGGCCGCGCGCTGA-TCGTG--CA---GAAA---T-C-----A---TCT--C--GCGCAG-CNTCCG----CACGGA-A---AC---CGCACGGCGGCT--GCACGGT--CACCGC-ACCATCTCCGCGCGG-CC-T-----CTGCACGGAA--GCCGCACG-GGCTCCGT-GCGATTTCCGTGC-------GGA-GGC--TGCG-GAGA-CTGCAC----GGCAA--CTGCACT-GAAATCGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC-GTA--GCCAC--------C--------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTT------ATCGCACGGCGCCCGGGGCAAATGTGA
gi|1 : CCGAATTCACATTT-GACCTGCAATGGGTCTACGGAGCCCGTATCCTGC--CCATATTCCACTTTC-CGTGCG--GCATCTGTGCGGAGGCAGGAAGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTTGCGAGAAGTTAT--ACAAATTT--G-AAAAA--ATCGTA---AGCCCGTAT-TCCGTAG-ACAAGTCATA--GGGGGTA----TTGG-GCAATCCCCGCA-CG-----G----GCA-CTACG-----------CGGAGGCCGCTTGG-GACTCGGA--CACTCAAAA---T-C-----A---TCT--CC-GCGCAG-CCTCTG----CACGGA-A---GC---CACACGG--GCTCAGTACGATTNNNNNNN-NNNATCTCCGCGCAG-CC-T-----CTGCACGGAA--GCCACACG-GGCTCAGT-ACGATTTCCGTGC-------GGA-GGC--TGCG-GAGA-CTGCAC----TGTAA--CTGCACT-GTAATTGCACGA-TTTCCGTACAATCTCCGCACAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATATGCCGT-----------------------------------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCGTTT------ATCGCACGGCTCCCGGGGCAAATGTGA
gi|10 : TTAGTTTAGCGAGAA-----------ATTT--G-AAAAA--ATCGTT---AGCCCGTAG-CCCGTAG-AAGTGTCGTA--GGTGG-A----TTGC-ACAATCCCCGCA-CG-----G----GCA-CCGCG-----------AAGAGGCCGCGCGCTGA-TCGTG--CA---GAAA---G-------A---TAT--T--AAGCGGATATTAG----GGGGGA-GGGGAT---CGTACGGAGATT--ATAGGCT--CTTTGG-ACAATC---GCACGGTCC-T-----C-GCAC--AACTATCGCAAG-GTTGCCAC-TCGCTGCCTGTGC---------A-GTC--AGCGTGAAA-TCGCAC----AGATA--CTGAGCA-GTCATCCCGTGGCTTTCCTTACAATCTCCGTGCAGCTTCTGCAAG-GCTTTGCCCCTGCCTTGTCC-CGAGAACCCGTACCAGAAATTGCACGATGCTCGTACATAATGTAAATACATACGCCGTAG---CCTGTA--GCCAC--------C--------T------ACAA-----TGC--CTCAAAAATCGTAGATCCATTT------ATCGGACGGtc
gi|11 : CCTGATTCACATTT-GGCCTGCGATGGGTTTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCA--GCATCCATGCGGAGACGGGAGGCGGCCGTGAGATTTTCGTATTGATTCACGGGCACCGCGGCCTCTACGACTTTGTTTAGCGAGAAGTTAT--ACAAATTT--G-AAAAA--ATCGTA---AGCCCGTAG-CCCGTAG-ACATGTCGTA--GGTGGCA----TTGC-GTAATCCCCGCA-CG-----G----GCA-TCGCG-----------CGGAGGCCGCGCGCTGA-TCGTG--CA---GAAA---t
gi|12 : tgatg---AC---AGCACGGCGGCT--GCACGGT--CACCGC-ACCATCTCCGCGCAG-CC-T-----CTGCACGGAA--GCCGCATG-GGCTTCGT-ACGATTTCAATGC-------GGA-GGC--TAAG-GAGA-CTGCAC----GGCAA--CTGCACT-GAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTAAG-GCTTTGCCCCGGCCTGCCCC-CGAGGGTCCGTACGAGAAATCGTACGATGCTCGTACACAATGTGAACACATACGCCGTAGC--CC-GTA--GTCACCTATGATGC--------C------TCAAAAA-TCGT--ACGGGAAATCGTAGACCCATTT------ATCACACGGCGCCCGGGGCAAATGTGAacgcaagattttaggtggacattgggggggaaaaaaattggacggaggaattgtaggctcttgggacaatctcacaggcctcgcacagctatcgcaaggttgctgctcactgccggagcagtaaccgtgaaatcgcactgatattgagcagt
gi|13 : --GCCGCTCGCAGC-CCGT-GCAGTAACCGTGA-------AAT-GGC---ACG-GATA-TTGAGC----AGTCATCCCGCGC---AAACC-CACAG-CGGCCGCACCATGGCCGTGCAGCCTCTGTACG-GCTTTGCCTCGACCTACCCCCCGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCTTAT---CCTGTA--GCCACCTACGATGC--------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTT------ATCGCGCGGCGCCCGGGGTAAATGTGAaccaggca
gi|14 : ctatcgcaaggttGA-CTGCAC----GGCAA--CTGCACT-GAAATTGCACGA-TTTCCGTACAATCTTCGCGCAGCCTCTGTAAG-GCTTTGTCCCGG-CTGCCTC-CGAGGGCC----------------CGATGCTCGTACACGATGTAAACACATACGCCG-AGGC-CC-GTA--GCCAC--------CTACGATGTT------TCAAAAA-TCGT--AAGGAAAATCGTAGACCCATTT------AGCGCACGGGGCCCGGGTCAAATGTGAac
gi|15 : cactggccaatggatgattgtatcgggaccgcgatttagttgttCCTAATTCACATTT-GGCCTGCGATTGGTCTACGGAGCCCGTATCATGT--CCGTATCCCGCTTTC-CGTGCG--GCCTCCGTG---------------------AGATTTTCGCACGGAAATACGGTAGCCGCGGCCTCTACGATTTTGTT-AGCGAAAAGTTTT--AAAAAACT--G-AAAAATAATCGT----------TAG-CCCATAC--CATGTCGTG--GGTGGCA----TTGC-ACAATCCCCGCA-CG-----G----GAA-CCTCG-----------CGGAAGCCGCACGCTGA-TCGTG--CA---GAAA---accaggcat
gi|16 : tgAGA-CTGCAC----TGCAA--CTGCAAT-ATAATTGCATGA-TTTCCATACAACCTCTGCGCAGCCTCTGTACG-GCTTTGCCACGGCCTG-CCC-CGAGTGCTTGTACAAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC--TAATACCACCTACGATGC--------C------TCTAAAA-TCGT--ACGGAAAATCGTAGACCCATTT------ATCACATGGCATCCGGGGCAAATGTGAacgc
gi|17 : CCTAATTAACATTT-GGCCTGCGATGGGTCTATGGAGCCCGTATCC-------------CCCTTCC-CGTGCG--G------------------------CCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGAATTTGTTAAGCCAGAACTTAT--ACAAATTT--G-AAAAA--ATCGTA----------AG-CCCGTAG-ACATGTCGTA--GGTGGCA----TTTC-GCAATCCCCGCA-CG-----G----GCA-----------------------CCGCGCGCTGA-TCTTG--CA---GAAA---accaggca
gi|18 : tgATTTACATTTTGGCCTGCGATGGGTCTACGGAGCCCTTATCCTGCGGCC-----------TC-CGTGCG--GTCTCatgct
gi|18 : tgctttGCGGTCTCTACGATTTTGTTTAGCGATAAGTTAT--ACAAATTT--G-AAAAA--AATGTT---AGCCCGTAG-CCCGTAG-ACATGTCGTA--GGTGGCA----GTGC-GCAATCCCCGCA-TG-----G-------------------------GAAG--TGCGCGCTGA-TCGTG--CA---GAAA---tacgattttgtttagcgataagttatacaaatttgaaaaaaatgttagcccgtagcccgtagacatgtcgtaggtggcagtgcgcaatccccgcatgggaagtgcgcgctgatcgtgcagaaaacgcaagcttttaggtg
gi|19 : tgctttatttacattttggcctgcgatgggtctacggagcccttatcctgcggcctccgtTAATTCACAATG-GGCCTGCAATGAGGCTACGGAGCCCGTATCCTGC--CCGTATCCACCTTTCACCTACGATGCCTacgcaagcttttaggtg
gi|19 : --------C--------C------T-AAAAA-TAGT--ACGGACAATCGTAGACC-ATTT------ATCGCACGGTGCCCGCGGCAAATGTGAaaaaatagtacggacaatcgtagaccatttatcgcacggtgcccgcggcaaatgtgaaccaag
gi|2 : taattcacaatgggcctgcaatgaggctacggagcccgtatcctgcccgtatccacctttcacctacgatgCCTAATTCACATTT-TGCCTGCAATGGGTCTAGGGAGCCCGTATCCTGT--CCGTATCCCCCTTTT-TGTGTA--GCCTCCGTACGGAGGCAGGAGGCGGCCGTGAGATTTTCCTACTGATTCACGGGCGCTACGGCCTCTACGATTTTGTTTAGCGAGAAGTTAA--GC-AATTT--T-AAAAA--ATCGTC---AGCCCGTAG-CCCGTAG-AC--GTCATA--Gaccaag
gi|2 : gtgAAAAA-TCTT--ACGG-AGATTGTAGGCTC--TTGGGACAATCGCACGGCtgatcatgcagataacgcaagatattagatgggcattggggaaaaaatcttacggagattgtaggctcttgggacaatcgcacggcccttgcacagccatcgcatttattttttcgtgatttccgtgcggatgctgcggagactgcacggcaactgcactgaaattgcatgatttccttaaaatctccgcgcagcctctgtacggctttgcaccggcctgtccccgagggcccgtaagagaaatcgcacgatgctcgtacacaatgtgctcacatacgccgtagcccgtagccacctacgatgcctaaaaatcgtatggaaaatcgtagacccatttatctcacggcgcccggggcaaatgttaacct
gi|2 : gtgcctaattcacattttgcctgcaatgggtctagggagcccgtatcctgtccgtatccccctttttgtgtagcctccgtacggaggcaggaggcggccgtgagattttcctactgattcacgggcgctacggcctctacgattttgtttagcgagaagttaagcaattttaaaaaatcgtcagcccgtagcccgtagacgtcatagtgatcatgcagataacgcaagatattagatgggcattggggaGGACA---AT---CGCACGGCCCTT--GCACAGC--CATCGC-Accttgcacagccatcgcatttattttttcgtgatttccgtgcggatgctgcggagactgcacggcaactgcactgaaattgcatgatttccttaaaatctccgcgcagcctctgtacggctttgcaccggcctgtccccgagggcccgtaagagaaatcgcacgatgctcgtacacaatgtgctcacatacgccgtagcccgtagccacctacgatgcctaaaaatcgtatggaaaatcgtagacccatttatctcacggcgcccggggcaaatgttaacct
gi|2 : gtgcctaattcacattttgcctgcaatgggtctagggagcccgtatcctgtccgtatccccctttttgtgtagcctccgtacggaggcaggaggcggccgtgagattttcctactgattcacgggcgctacggcctctacgattttgtttagcgagaagttaagcaattttaaaaaatcgtcagcccgtagcccgtagacgtcatagtgatcatgcagataacgcaagatattagatgggcattggggaaaaaatcttacggagattgtaggctcttgCGCACGG-CC-C-----TTGCACAGCC--ATCGCATT-TATTTTTTCGTGATTTCCGTGC-------GGA-TGC--TGCG-GAGA-CTGCAC----GGCAA--CTGCACT-GAAATTGCATGA-TTTCCTTAAAATCTCCGCGCAGCCTCTGTACG-GCTTTGCACCGGCCTGTCCC-CGAGGGCCCGTAAGAGAAATCGCACGATGCTCGTACACAATGTGCTCACATACGCCGTAGC--CC-GTA--GCCAC--------CTACGATG-C------CTAAAAA-TCGT--ATGGAAAATCGTAGACCCATTT------ATCTCACGGCGCCCGGGGCAAATGTtttattttttcgtgatttccgtgcggatgctgcggagactgcacggcaactgcactgaaattgcatgatttccttaaaatctccgcgcagcctctgtacggctttgcaccggcctgtccccgagggcccgtaagagaaatcgcacgatgctcgtacacaatgtgctcacatacgccgtagcccgtagccacctacgatgcctaaaaatcgtatggaaaatcgtagacccatttatctcacggcgcccggggcaaatgttaacct
gi|20 : gtgcctaattcacattttgcctgcaatgggtctagggagcccgtatcctgtccgtatccccctttttgtgtagcctccgtacggaggcaggaggcggccgtgagattttcctactgattcacgggcgctacggcctctacgattttgtttagcgagaagttaagcaattttaaaaaatcgtcagcccgtagcccgtagacgtcatagtgatcatgcagataacgcaagatattagatgggcattggggaaaaaatcttacggagattgtaggctcttgggacaatAAATCACACG-TGCTCGTACACAATGTGAACACATACGCCATAG---CCAGTA--GCCAC--------C--------TATGATGCCGAAAT-TTTTTTACGGAAAATCGTAGACCCATTT------ATTGCATGGCGCCCGGGGCAAATGTGAtaacct
gi|21 : TAATTCACATTT-GGCCTTCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATTCCCCTTTC-CGTGCG--GCCacgaggca
gi|3 : tCCTAATTCACATTT-GGCCTACACTGGGTCTACGG-----GTAACCTGC--CCGTATCCCACTTTC-CGTGCG--GCCTCCGTGTGGAGGCAGGAGGCGGCCGTGAGATTTTTGAACGGATTCACGCGCGCCGCGGCCTCTACGATTTTGT-----------TTAT--ACAAATTT--G-AAAAA--ATCGTA---AGTTCGTGG-CCCGTAA-ACATGTCGTT--GATGGCA----TTGA-GCAATCCCCATGTCGTTGATG----GCA-AT----------------GAGACCGGGCGCTGA-TCGTG--CA---AAAAAACG-CAAG--A---TTT--T--AGGTGGCCATTGG----GGCAAA-A---ACAATCGTACGGAGATT--GCAGGCT--C-TTGTGACAAT---CGAACGG-CTATCGCAACTGTACTGAA--AGTGCACA-ATTCCCGT-ACAATCTCTGCGCAACCTCTGTACGGCATTGCT-CAGGCCTGCCCCGGGGGC----CCGTACGAGAAATCGCACGA-TGCTCGTACA
gi|3 : tgGCAA--CTGTACT-GAAAGTGCACAA-TTCCCGTACAATCTCTGCGCAACCTCTGTACG-GCATTGCTCAGGCCTGCCCC--GGGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC---A--CCTACGATG----C--------C------TAAAAAA--AGT--ACGAAAAATCGTATATCCATTT------ATCGCACGGCGCCCATGGCAAATGTGAcaatgtgaacacatacgccgtagccacctacgatgcctaaaaaaagtacgaaaaatcgtatatccatttatcgcacggcgcccatggcaaatgtgaatcaggca
gi|4 : tgcctaattcacatttggcctacactgggtctacgggtaacctgcccgtatcccactttccgtgcggcctccgtgtggaggcaggaggcggccgtgagatttttgaacggattcacgcgcgccgcggcctctacgattttgtttatacaaatttgaaaaaatcgtaagttcgtggcccgtaaacatgtcgttgatggcattgagcaatccccatgtcgttgatggcaatgagaccgggcgctgatcgtgcaaaaaaacgcaagattttaggtggccattggggcaaaaacaatcgtacggagattgcaggctcttgtgacaatcgaacggctatcCCTAATTCACATTT-GGCCTGCGATGGGTTTACGT-GCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCTTGTGGAGGCAGGAGGCGGCCGTGAGCTTTTCGTACGGATTCATGGGCACCTCGGCCTCTACGATTTTGTTAAGCGAGAAGTT-TGAACAAATTT--G-AAAAA--ATCGTA---AGCCTGTAG-CCCGTAG-TCATGTCGTA--GGTGGCA----ATGT-GCAGCCCCCGCA-CA-----G----GCA-CTGCG-----------CGGAGGTCACGCGCTGA-TCGTC--AA---GAAA---C-TGCAAGA---TTTAAG--GTG-AA-CATTGG----GTAAAA-A---AC---GGCACGGCGGCT--GCACGGT--CATCGC-ACCAGCTCCGCACAG-CC-T-----CTGCACGGAA--GCCGCACG-G------------TTTCCG-------------------TGCG-GAGA-ATGCAC----GGCAA--CTGCATT-GAAATTG----------CGTACAATTTTCGCGTAGCCTCTGTACG-GCTTTGCCCCGGCCTGTCCC-CGAAGGCCCGTACGAGAAATTGCACGCTGCTTGCACACAATGTGAACACCTACGCCGTAG---CC-atcaggca
gi|5 : ataCCTAATTCACATTT-GGCCTGCGATGGGTCTACAGAGCCC-------------GTATCCCCCTTTC-CGTGCG--GCCTCCATGCAGAGGCAGGAGGTGACCGTGAGATTT--GTACGGATTCACGGGCA---------CTACGATTTTGTTAAGTG-GAAGcgt
gi|5 : ttatgCA-CG-----G----GCA-CTACGATTTTGTTAAGTGGAAGCCGCACGCTGA-TCTTC--CA---GAAAA--TGC-----AAGATTT--TAGGTG-AA-CATTGGGGCTCAAAAA-A---AC---GGCACGGCGGCT--ACACGGT--CACCGC-ACCATCTCCATGCAG-CC-T-----CTGCACTGTA--GCCACATG-GGCTCCAT-ATGATTTCTGTGT-------GGA-GGC--TGCG-GAGA-CTGCAT----GTCTA--CTGCACT-GAAATTGCACAA-TTTCTGTACAATCTCCG-ACAGTCTCTGTACA-GCTTTGCCTCGGCCTTCACC-CGAGGG-CCGTACAAGAATTGGCATGATGCTCATACACAATGTGAACACAT--GTTGTAGCCACC-GTA--ACGATG-------C--------C------TCAAAAT-TCAT--ATGGAAAATCAAACATCCCTTT------ATCACACAGCGCCCAGGGCAAATGTGAccgcacgctgatcttccagaaaatgcaagattttaggtgaacattggggctcaaaaaaacggcacggcggctacacggtcaccgcaccatctccatgcagcctctgcactgtagccacatgggctccatatgatttctgtgtggaggctgcggagactgcatgtctactgcactgaaattgcacaatttctgtacaatctccgacagtctctgtacagctttgcctcggccttcacccgagggccgtacaagaattggcatgatgctcatacacaatgtgaacacatgttgtagccaccgtaacgatgcctcaaaattcatatggaaaatcaaacatccctttatcacacagcgcccagggcaaatgtgaaccaggta
gi|6 : ttatgcctaattcacatttggcctgcgatgggtctacagagcccgtatccccctttccgtgcggcctccatgcagaggcaggaggtgaccgtgagatttgtacggattCTTATTCACATTT-GGCCTGCGATTGGTCTA---AGCCCGTATCCTGT--CGGTATCCCCCTT--------------TCAGTGTGGAGGCAGGAGGCTTTCGTGAGTTTTTTGT--------ACAGGCTCTGCGGCATCCATGATTTTGTTTAGGGAGAAG--------------------AAA--ATTGTA---AACCCATA------T---ACATGTCTTA--GGTGGCA----TTGC-GCAATCTCCGCT-C------G----GTA-CCACG-----------CTGAGTCCGTGCGCTGA-TCATG--CA---GAAA---A-C-----A---accaggta
gi|6 : -----------CAGAGGCTGTGCGGAGA-TTGTA--CG---AAAA---T-C-----A---T---------GCA---ATCCG----CACGGA-A---AT---CGTACGGCcaagatttaagctggacatttgggacaaaaaaaaaattgtacagagattgtaggctcttgggacaatcacaaggttgccgtacgatttccgtgcggattgcatgattttcgtacaatctccgcacagcctctgtatgactatgccttggcctgcccccgtgggcccgtacaagaaaccgcataatgcccgcacacaatgtgaacatatatgttgtagccaactatgatgcttaaaaaatcgtacggaaaatcatagacccatttatcgcatggcgcccggggc
gi|6 : cttattcacatttggcctgcgattggtctaagcccgtatcctgtcggtatccccctttcagtgtggaggcaggaggctttcgtgagttttttgtacaggctctgcggcatccatgattttgtttagggagaagaaaattgtaaacccatatacatgtcttaggtggcattgcgcaatctccgctcggtaccacgctgagtccgtgcgctgatcatgcagaaaacacaagatttaagctggacatttgggacaaaaaaaaaattgtacagagattgtaggctcttgggacaatcacaaggttATTGCATGA-TTTTCGTACAATCTCCGCACAGCCTCTGTATG-ACTATGCCTTGGCCTGCCCC-CGTGGGCCCGTACAAGAAACCGCATAATGCCCGCACACAATGTGAACATATATGTTGTAG---CC---A--ACTATGATG----C--------T------TAAAAAA-TCGT--ACGGAAAATCATAGACCCATTT------ATCGCATGGCGCCCGGGGCtatgactatgccttggcctgcccccgtgggcccgtacaagaaaccgcataatgcccgcacacaatgtgaacatatatgttgtagccaactatgatgcttaaaaaatcgtacggaaaatcatagacccatttatcgcatggcgcccggggc
gi|7 : cttattcacatttggcctgcgattggtctaagcccgtatcctgtcggtatccccctttcagtgtggaggcaggaggctttcgtgagttttttgtacaggctctgcggcatccatgattttgtttagggagaagaaaattgtaaacccatatacatgtcttaggtggcattgcgcaatctccgctcggtaccacgctgagtccgtgcgctgatcatgcagaaaacacaagatttaagctggacatttgggacaaaaaaaaaattgtacagagattgtaggctcttgggacaatcacaaggttgccgtacgatttccgtgcggCCTCCATGTGGAGGCAGGAGGTGGCCGTGAGATTTTCGTACAGATTCAAGGGCACCAAG--------GATATTGTTTAGCGAGATTTTAT--ACAAATCT--GTAAAAA--ATCGTA----------AG-CCCGTAG-ACATGTCGTA--GGTGGCA----TT-------------CA-TG-----G----GCA-ACGTG-----------CGGAGGCTGCGTGCTTA-TCATG--CA---GAA
gi|7 : C--TGCG-AAGA-CTGCAC----GGCAA--CTGCACT-GAAATTGCACAA-TTTCTGTACAATCTCCACGCAGCC---ATAAG-GCTTTGCCCCAGCCTGCCCA-CAAGGGCCAGTAAGAGAAATCGCATGATGCTCGTACATTATGTGAACACATACGCCGTAGT--CT-GTA--GCCACCTATGATGC--------C------TCAAAAATTCGT--ACGGAAAATAGTATA-CCATTT------ATCACACAGCGCCTGGGACAATTGTGAtacgcaagattttaggtagacattgggggaaaaaaaaatacggagattgtaggctcttgcacagctaccgcaaggttgccactcgctgcccctgcgaagactgcacggcaactgcactgaaattgcacaatttctgtacaatctccacgcagccataaggctttgccccagcctgcccacaagggccagtaagagaaatcgcatgatgctcgtacattatgtgaacacatacgccgtagtctgtagccacctatgatgcctcaaaaattcgtacggaaaatagtataccatttatcacacagcgcctgggacaattgtgaaccaggc
gi|8 : cctccatgtggaggcaggaggtggccgtgagattttcgtacagattcaagggcaccaaggatattgtttagcgagattttatacaaatctgtaaaaaatcgtaagcccgtagacatgtcgtaggtggcattcatgggcaacgtgcggaggctgcgtgcttatcatgcagaatacgcaagattttaggtagacattgggggaaaaaaaaatacggagattgtaggctcttgcacagctaccgcaaggttgccactcgctgcccCCTAATTCACATTT-GGCCTACGATGGGTCTACGGTGTCTGTATCCTGC--CTGTATCCTACTTTC-TGTGGG--GTCTCCATGTGG-------AGGCAG----GAGGCT-------------------GCTGCGACCTCTACGATTTCGTTTAGCGAGTAGTTAT--ACAAATTT--G-AAAAA--AATGTA---AGCCCGTAG-CCAGTAG-ACATGTCGTA--GGTGGCA----TTGC-GCAATCCCCACA-CG-----G----GCA-CCGCG-----------CAGAAGCTGCACGCTGA-TTGTG--CA---GAAA---accaggc
gi|8 : gGCACGG-CC-T-----TCGCACAGCT--ATTGCAAG-GGCTCCAT-ATGATTTCCATGC-------GAA-G------------A-CTGTAC----GGCAA--CTGCACT-GAAA---------TTTC---ACGATTTC-----------TGTACAAGCT----------------C-CGATGGCCCGTTTGAGAAATCGCACAATGCTCGTACTCAATGTGAACACATACACCGTAG---CC---A--CCTACGATG----C--------C------TAAAAGA-TTAT--Aacgcaagatttaaggtggacatgggggaaaaacaaaatcaaacagagattttaggctcttgggacaaagtgcacggccttcgcacagctattgcaagggctccatatgatttccatgcgaagactgtacggcaactgcactgaaatttcacgatttctgtacaagctccgatggcccgtttgagaaatcgcacaatgctcgtactcaatgtgaacacatacaccgtagccacctacgatgcctaaaagattata
gi|9 : gcctaattcacatttggcctacgatgggtctacggtgtctgtatcctgcctgtatcctactttctgtggggtctccatgtggaggcaggaggctgctgcgacctctacgatttcgtttagcgagtagttatacaaatttgaaaaaaatgtaagcccgtagccagtagacatgtcgtaggtggcattgcgcaatccccacacgggcaccgcgcagaagctgcacgctgattgtgcagaaaacgcaagatttaaggtggacatgggggaaaaacaaaatcaaacagagattttaggctcttgggacaaagtCCTAATTCACATTT-GGCCTGCGATGGGTCTATGGAGCCCGTATCCTGC--CCGTTTTCGCCTTTC-CGTGCG--GCGTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGAG-----------TTTGTTAAGCGAGAAGTTAT--ACAAATTTAAA-AAAAA--ATCGTA---AGCCCGTAG-CCCGTAG-ACATGTCGTA--GGTGGCA----TTGC-GCAATCCCCACA-CG-----G----GCA-CCGCG-----------CGGAGGCAGCGCGCTGA-TCGTG--CA---GAAA---
gi|9 : g-AAAAA--ATCGTACGGAGATTGTAGGCTCTTGGGACA-GTCGCACAGCTATCACATGTTGCCGC--TCGCTGC--CG-----GTTCAGTAACCGTG--------------AAATCGCACG--GA-TATTGATCA---G------T-C-----A---TCC--C--GC--AG-CAACCG----CAC----A---AC---AGCACGGCGGCT--GCACGGT--CACCGC-ACCATCTCCGCGCAG-CC-T-----CTGCACGGacgcaagattttaggtggacattggggcaaaaaaaatcgtacggagattgtaggctcttgggacagtcgcacagctatcacatgttgccgctcgctgccggttcagtaaccgtgaaatcgcacggatattgatcagtcatcccgcagcaaccgcacaacagcacggcggctgcacggtcaccgcaccatctccgcgcagcctctgcacgg
Alignments
lowQualScore : 11111111111 999999999999999999999999999999999999999999999999999999999999 222222222222222222222222222222222222222 111111111 222222222222222222 22222222222222 111 1111111 777777777777777777777777
lowQualScore : 2 33 2 33 2 0 3 0 44 44 3 44 11 2 77777 0 2 33333333333 0 2 2 444 66666 33 444444444444444444444444444444444444444444444444444444444444 666 5 55 55 3 5 55 222222222222222222222222222222222222222 44 7777 3 111111111 2 44 55 0 55 999999999999999999 2 55 44444444444444 3 2 55 000 3 6666 2 8888 2 2 0 3 8888888 44 666666666666666666666666 0 2 33
lowQualScore : . .. . .. . . . . .. .. . .. .. . ..... . . ........... . . . ... ..... .. ............................................................ ... . .. .. . . .. ....................................... .. .... . ......... . .. .. . .. .................. . .. .............. . . .. ... . .... . .... . . . . ....... .. ........................ . . ..
lowQualScore : 9 99 9 99 9 8 6 5 22 22 1 22 00 9 11111 1 4 66666666666 1 7 7 777 77777 77 000000000000000000000000000000000000000000000000000000000000 444 9 00 00 6 1 00 666666666666666666666666666666666666666 66 1111 3 999999999 6 66 77 8 55 666666666666666666 2 00 33333333333333 6 5 00 000 1 5555 9 9999 7 9 2 1 1111111 22 777777777777777777777777 1 9 99
consensus : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTTAT--ACAAATTT--G-AAAAA--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCGCA-CG-----GGCACCGCG-----------CGGAGGCCGCGCGCTGA-TCGTGC-A---GAA-----A-ACGCAAGA----T-TT--T--GNGCGG-CATT---GGGG------------C----GG----AAAC---CGCACGGNGG--CT--GCACGNT--C-----AC---CGC-A------C--------CA-TCT--CCG--C----GCGG-CC---T-----CTGCA--CG-GAA--ACCGCACGG-----GC------TC---CGTACGATT--TCCGTGC-------GG-----A-GGC--TGCG---GAGA-CTGCAC----GGCAACTG-CACT----GAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC-GTA--GCCAC--------C--------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTTATCGCACGGCGCCCGGGGCAAATGTGA
Reference ( family-5232 ) : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTTAT--ACAAATTT--G-AAAAA--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCGCA-CG-----GGCACCGCG-----------CGGAGGCCGCGCGCTGA-TCGTGC-A---GAA-----A-NC-----A----T-TT--C--GCGCAG-CATC---GGCG------------C----GG----AAAC---CGCACGGCGG--CT--GCACGGT--C-----AC---CGC-A------C--------CA-TCT--CCG--C----GCGG-CC---T-----CTGCA--CG-GAA--GCCGCACGG-----GC------TC---CGTACGATT--TCCGTGC-------GG-----A-GGC--TGCG---GAGA-CTGCAC----GGCAACTG-CACT----GAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC-GTA--GCCAC--------C--------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTTATCGCACGGCGCCCGGGGCAAATGTGA
gi|1 : CCGAATTCACATTT-GACCTGCAATGGGTCTACGGAGCCCGTATCCTGC--CCATATTCCACTTTC-CGTGCG--GCATCTGTGCGGAGGCAGGAAGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTTGCGAGAAGTTAT--ACAAATTT--G-AAAAA--ATCGTAAGCCCGTATTCCGTAGACAAGTCATAGGGGGTATTGGGCAATCCCCGCA-CG-----GGCACTACG-----------CGGAGGCCGCTTGG-GACTCGGAC-ACTCAAA-----A-TC-----A----T-CT--CC-GCGCAG-CCTC---TGCA------------C----GG----AAGC---CACACGG--G--CTCAGTACGATTNN-----NN---NNN-N------N--------NA-TCT--CCG--C----GCAG-CC---T-----CTGCA--CG-GAA--GCCACACGG-----GC------TC---AGTACGATT--TCCGTGC-------GG-----A-GGC--TGCG---GAGA-CTGCAC----TGTAACTG-CACT----GTAATTGCACGA-TTTCCGTACAATCTCCGCACAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATATGCCGT-----------------------------------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCGTTTATCGCACGGCTCCCGGGGCAAATGTGA
gi|10 : TTAGTTTAGCGAGAA-----------ATTT--G-AAAAA--ATCGTTAGCCCGTAGCCCGTAGAAGTGTCGTAGGTGG-ATTGCACAATCCCCGCA-CG-----GGCACCGCG-----------AAGAGGCCGCGCGCTGA-TCGTGC-A---GAA-----AGAT-----A----T-TA--A--GCGGA--TATTAGGGGGG------------A----GG----GGAT---CGTACGGAGA--TT--ATAGGCT--C-----TT---TGG-A------C--------AA-T-----CG--C----ACGGTCC---T-----C-GCA--C---AACTATCGCAAGG-----TT------GC---CACTCGCTG--CCTGTGC--------------A-GTC--AGCGT--GAAA-TCGCAC----AGATACTG-AGCA----GTCATCCCGTGGCTTTCCTTACAATCTCCGTGCAGCTTCTGCAAG-GCTTTGCCCCTGCCTTGTCC-CGAGAACCCGTACCAGAAATTGCACGATGCTCGTACATAATGTAAATACATACGCCGTAG---CCTGTA--GCCAC--------C--------T------ACAA-----TGC--CTCAAAAATCGTAGATCCATTTATCGGACGGtc
gi|11 : CCTGATTCACATTT-GGCCTGCGATGGGTTTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCA--GCATCCATGCGGAGACGGGAGGCGGCCGTGAGATTTTCGTATTGATTCACGGGCACCGCGGCCTCTACGACTTTGTTTAGCGAGAAGTTAT--ACAAATTT--G-AAAAA--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGTAATCCCCGCA-CG-----GGCATCGCG-----------CGGAGGCCGCGCGCTGA-TCGTGC-A---GAA-----A-ACGCAAGA----T-TT--T--AGGTGGACATT---GGGG------------G----GGAAAAAAAT---TGGACGGAGGAATT--GTAGGCT--C-----TT---GGG-A------C--------AA-TCT---CA--C----A-GG-CC---T-----C-GCA--CA-Gt
gi|12 : tgatgAC---AGCACGGCGG--CT--GCACGGT--C-----AC---CGC-A------C--------CA-TCT--CCG--C----GCAG-CC---T-----CTGCA--CG-GAA--GCCGCATGG-----GC------TT---CGTACGATT--TCAATGC-------GG-----A-GGC--TAAG---GAGA-CTGCAC----GGCAACTG-CACT----GAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTAAG-GCTTTGCCCCGGCCTGCCCC-CGAGGGTCCGTACGAGAAATCGTACGATGCTCGTACACAATGTGAACACATACGCCGTAGC--CC-GTA--GTCACCTATGATGC--------C------TCAAAAA-TCGT--ACGGGAAATCGTAGACCCATTTATCACACGGCGCCCGGGGCAAATGTGActatcgcaaggttgctgctcactgccggagcagtaaccgtgaaatcgcactgatattgagcagt
gi|13 : CGCA-AG-----GTTGCCGCT-----------CGCAGCCCGTGCAGTAA-CCGTG--A---AAT-----G-GC-----ACGGAT-AT--T--GAGCAGTCATC---C-CG------------C----GC----AAAC---C-CACAGCGG--C-----------------------CGC-A------C--------CA-TGG--CCG--T----GCAG-CC---T-----CTGTA--CG-Gaccaggca
gi|13 : ctatCCGCACCATGGCCGTGCAGCCTCTGTACG-GCTTTGCCTCGACCTACCCCCCGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCTTAT---CCTGTA--GCCACCTACGATGC--------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTTATCGCGCGGCGCCCGGGGTAAATGTGActttgcctcgacctaccccccgagggcccgtacgagaaatcgcacgatgctcgtacacaatgtgaacacatacgccttatcctgtagccacctacgatgcctcaaaaatcgtacggaaaatcgtagacccatttatcgcgcggcgcccggggtaaatgtgaac
gi|14 : ctatcgcaaggttgccgctcgcagcccgtgcagtaaccgtgaaatggcacggatattgagcagtcatcccgcgcaaacccacagcggGA-CTGCAC----GGCAACTG-CACT----GAAATTGCACGA-TTTCCGTACAATCTTCGCGCAGCCTCTGTAAG-GCTTTGTCCCGG-CTGCCTC-CGAGGGCC----------------CGATGCTCGTACACGATGTAAACACATACGCCG-AGGC-CC-GTA--GCCAC--------CTACGATGTT------TCAAAAA-TCGT--AAGGAAAATCGTAGACCCATTTAGCGCACGGGGCCCGGGTCAAATGTGAac
gi|15 : cactggccaatggatgattgtatcgggaccgcgatttagttgttCCTAATTCACATTT-GGCCTGCGATTGGTCTACGGAGCCCGTATCATGT--CCGTATCCCGCTTTC-CGTGCG--GCCTCCGTG---------------------AGATTTTCGCACGGAAATACGGTAGCCGCGGCCTCTACGATTTTGTT-AGCGAAAAGTTTT--AAAAAACT--G-AAAAATAATCGT-------TAGCCCATAC-CATGTCGTGGGTGGCATTGCACAATCCCCGCA-CG-----GGAACCTCG-----------CGGAAGCCGCACGCTGA-TCGTGC-A---GAA-----A-AC-----accaggcat
gi|16 : tgAGA-CTGCAC----TGCAACTG-CAAT----ATAATTGCATGA-TTTCCATACAACCTCTGCGCAGCCTCTGTACG-GCTTTGCCACGGCCTG-CCC-CGAGTGCTTGTACAAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC--TAATACCACCTACGATGC--------C------TCTAAAA-TCGT--ACGGAAAATCGTAGACCCATTTATCACATGGCATCCGGGGCAAATGTGAgc
gi|17 : CCTAATTAACATTT-GGCCTGCGATGGGTCTATGGAGCCCGTATCC-------------CCCTTCC-CGTGCG--G------------------------CCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGAATTTGTTAAGCCAGAACTTAT--ACAAATTT--G-AAAAA--ATCGTA-------AGCCCGTAGACATGTCGTAGGTGGCATTTCGCAATCCCCGCA-CG-----GGCA----------------------CCGCGCGCTGA-TCTTGC-A---GAA-----A-accaggca
gi|18 : tgATTTACATTTTGGCCTGCGATGGGTCTACGGAGCCCTTATCCTGCGGCC-----------TC-CGTGCG--GTCTCatgct
gi|18 : tgctttGCGGTCTCTACGATTTTGTTTAGCGATAAGTTAT--ACAAATTT--G-AAAAA--AATGTTAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCAGTGCGCAATCCCCGCA-TG-----G--------------------GAAG--TGCGCGCTGA-TCGTGC-A---GAA-----A-AC-----tacgattttgtttagcgataagttatacaaatttgaaaaaaatgttagcccgtagcccgtagacatgtcgtaggtggcagtgcgcaatccccgcatgggaagtgcgcgctgatcgtgcagaaaacgcaagcttttaggtg
gi|19 : tgctttatttacattttggcctgcgatgggtctacggagcccttatcctgcggcctccgtTAATTCACAATG-GGCCTGCAATGAGGCTACGGAGCCCGTATCCTGC--CCGTATCCACCTTTCACCTACGATGCCTgcaagcttttaggtg
gi|19 : --------C--------C------T-AAAAA-TAGT--ACGGACAATCGTAGACC-ATTTATCGCACGGTGCCCGCGGCAAATGTGAaaaaatagtacggacaatcgtagaccatttatcgcacggtgcccgcggcaaatgtgaaccaag
gi|2 : taattcacaatgggcctgcaatgaggctacggagcccgtatcctgcccgtatccacctttcacctacgatgCCTAATTCACATTT-TGCCTGCAATGGGTCTAGGGAGCCCGTATCCTGT--CCGTATCCCCCTTTT-TGTGTA--GCCTCCGTACGGAGGCAGGAGGCGGCCGTGAGATTTTCCTACTGATTCACGGGCGCTACGGCCTCTACGATTTTGTTTAGCGAGAAGTTAA--GC-AATTT--T-AAAAA--ATCGTCAGCCCGTAGCCCGTAGAC--GTCATAGaccaag
gi|2 : gtgTGA-TCATGC-A---GAT-----A-ACGCAAGA----TATT--A--GATGGG-CATT---GGGG------------A----AA----AAAT---CTTACGGAGA--TT--GTAGGCT--C-----TT---GGG-A------C--------AA-TC-----G--C----ACGG-CC---C-----TTGCA--CA-GCC--ATCGCATTT-----AT------TTTTTCGT--GATT--TCCGTGC-------GG-----A-TGC--TGCG---GAGA-CTGCAC----GGCAACTG-CACT----GAAATTGCATGA-TTTCCTTAAAATCTCCGCGCAGCCTCTGTACG-GCTTTGCACCGGCCTGTCCC-CGAGGGCCCGTAAGAGAAATCGCACGATGCTCGTACACAATGTGCTCACATACGCCGTAGC--CC-GTA--GCCAC--------CTACGATG-C------CTAAAAA-TCGT--ATGGAAAATCGTAGACCCATTTATCTCACGGCGCCCGGGGCAAATGTtgatcatgcagataacgcaagatattagatgggcattggggaaaaaatcttacggagattgtaggctcttgggacaatcgcacggcccttgcacagccatcgcatttattttttcgtgatttccgtgcggatgctgcggagactgcacggcaactgcactgaaattgcatgatttccttaaaatctccgcgcagcctctgtacggctttgcaccggcctgtccccgagggcccgtaagagaaatcgcacgatgctcgtacacaatgtgctcacatacgccgtagcccgtagccacctacgatgcctaaaaatcgtatggaaaatcgtagacccatttatctcacggcgcccggggcaaatgttaacct
gi|20 : gtgcctaattcacattttgcctgcaatgggtctagggagcccgtatcctgtccgtatccccctttttgtgtagcctccgtacggaggcaggaggcggccgtgagattttcctactgattcacgggcgctacggcctctacgattttgtttagcgagaagttaagcaattttaaaaaatcgtcagcccgtagcccgtagacgtcatagAAATCACACG-TGCTCGTACACAATGTGAACACATACGCCATAG---CCAGTA--GCCAC--------C--------TATGATGCCGAAAT-TTTTTTACGGAAAATCGTAGACCCATTTATTGCATGGCGCCCGGGGCAAATGTGAtaacct
gi|21 : TAATTCACATTT-GGCCTTCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATTCCCCTTTC-CGTGCG--GCCacgaggca
gi|3 : tCCTAATTCACATTT-GGCCTACACTGGGTCTACGG-----GTAACCTGC--CCGTATCCCACTTTC-CGTGCG--GCCTCCGTGTGGAGGCAGGAGGCGGCCGTGAGATTTTTGAACGGATTCACGCGCGCCGCGGCCTCTACGATTTTGT-----------TTAT--ACAAATTT--G-AAAAA--ATCGTAAGTTCGTGGCCCGTAAACATGTCGTTGATGGCATTGAGCAATCCCCATGTCGTTGATGGCAAT----------------GAGACCGGGCGCTGA-TCGTGCAA---AAA-----A-ACGCAAGA----T-TT--T--AGGTGGCCATT---GGGG------------C----AA----AAACAATCGTACGGAGA--TT--GCAGGCT--C------T---TGTGA------C--------AA-T-----CG--A----ACGG-CTA--TCGCAACTGTA--CT-GAA--AGTGCACAA-----TT------CC---CGTACAATC--TCTGCGCAACCTCTGT-----ACGGCATTGCT---CAGGCCTGCCCCGGGGGC--CCG-TACGA---GAAATCGCACGA-TGCTCGTACA
gi|3 : tgGCAACTG-TACT----GAAAGTGCACAA-TTCCCGTACAATCTCTGCGCAACCTCTGTACG-GCATTGCTCAGGCCTGCCCC--GGGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC---A--CCTACGATG----C--------C------TAAAAAA--AGT--ACGAAAAATCGTATATCCATTTATCGCACGGCGCCCATGGCAAATGTGAcaatgtgaacacatacgccgtagccacctacgatgcctaaaaaaagtacgaaaaatcgtatatccatttatcgcacggcgcccatggcaaatgtgaatcaggca
gi|4 : tgcctaattcacatttggcctacactgggtctacgggtaacctgcccgtatcccactttccgtgcggcctccgtgtggaggcaggaggcggccgtgagatttttgaacggattcacgcgcgccgcggcctctacgattttgtttatacaaatttgaaaaaatcgtaagttcgtggcccgtaaacatgtcgttgatggcattgagcaatccccatgtcgttgatggcaatgagaccgggcgctgatcgtgcaaaaaaacgcaagattttaggtggccattggggcaaaaacaatcgtacggagattgcaggctcttgtgacaatcgaacggctatcCCTAATTCACATTT-GGCCTGCGATGGGTTTACGT-GCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCTTGTGGAGGCAGGAGGCGGCCGTGAGCTTTTCGTACGGATTCATGGGCACCTCGGCCTCTACGATTTTGTTAAGCGAGAAGTT-TGAACAAATTT--G-AAAAA--ATCGTAAGCCTGTAGCCCGTAGTCATGTCGTAGGTGGCAATGTGCAGCCCCCGCA-CA-----GGCACTGCG-----------CGGAGGTCACGCGCTGA-TCGTCA-A---GAA-----A-CTGCAAGA----T-TTAAG--GTG-AA-CATT---GGGT------------A----AA----AAAC---GGCACGGCGG--CT--GCACGGT--C-----AT---CGC-A------C--------CA-GCT--CCG--C----ACAG-CC---T-----CTGCA--CG-GAA--GCCGCACGG-------------------------TT--TCCG------------------------TGCG---GAGA-ATGCAC----GGCAACTG-CATT----GAAATTG----------CGTACAATTTTCGCGTAGCCTCTGTACG-GCTTTGCCCCGGCCTGTCCC-CGAAGGCCCGTACGAGAAATTGCACGCTGCTTGCACACAATGTGAACACCTACGCCGTAG---CC-atcaggca
gi|5 : ataCCTAATTCACATTT-GGCCTGCGATGGGTCTACAGAGCCC-------------GTATCCCCCTTTC-CGTGCG--GCCTCCATGCAGAGGCAGGAGGTGACCGTGAGATTT--GTACGGATTCACGGGCA---------CTACGATTTTGTTAAGTG-GAAGcgt
gi|5 : ttatgCA-CG-----GGCACTACGATTTTGTTAAGTGGAAGCCGCACGCTGA-TCTTCC-A---GAA-----A-ATGCAAGA----T-TT--TAGGTG-AA-CATT---GGGG------------CTCAAAA----AAAC---GGCACGGCGG--CT--ACACGGT--C-----AC---CGC-A------C--------CA-TCT--CCA--T----GCAG-CC---T-----CTGCA--CT-GTA--GCCACATGG-----GC------TC---CATATGATT--TCTGTGT-------GG-----A-GGC--TGCG---GAGA-CTGCAT----GTCTACTG-CACT----GAAATTGCACAA-TTTCTGTACAATCTCCG-ACAGTCTCTGTACA-GCTTTGCCTCGGCCTTCACC-CGAGGG-CCGTACAAGAATTGGCATGATGCTCATACACAATGTGAACACAT--GTTGTAGCCACC-GTA--ACGATG-------C--------C------TCAAAAT-TCAT--ATGGAAAATCAAACATCCCTTTATCACACAGCGCCCAGGGCAAATGTGAccgcacgctgatcttccagaaaatgcaagattttaggtgaacattggggctcaaaaaaacggcacggcggctacacggtcaccgcaccatctccatgcagcctctgcactgtagccacatgggctccatatgatttctgtgtggaggctgcggagactgcatgtctactgcactgaaattgcacaatttctgtacaatctccgacagtctctgtacagctttgcctcggccttcacccgagggccgtacaagaattggcatgatgctcatacacaatgtgaacacatgttgtagccaccgtaacgatgcctcaaaattcatatggaaaatcaaacatccctttatcacacagcgcccagggcaaatgtgaaccaggta
gi|6 : ttatgcctaattcacatttggcctgcgatgggtctacagagcccgtatccccctttccgtgcggcctccatgcagaggcaggaggtgaccgtgagatttgtacggattCTTATTCACATTT-GGCCTGCGATTGGTCTA---AGCCCGTATCCTGT--CGGTATCCCCCTT--------------TCAGTGTGGAGGCAGGAGGCTTTCGTGAGTTTTTTGT--------ACAGGCTCTGCGGCATCCATGATTTTGTTTAGGGAGAAG--------------------AAA--ATTGTAAACCCATA-----T--ACATGTCTTAGGTGGCATTGCGCAATCTCCGCT-C------GGTACCACG-----------CTGAGTCCGTGCGCTGA-TCATGC-A---GAA-----A-AC-----A----accaggta
gi|6 : C---CGTACGATT--TCCGTGC-------GG-----A-caagatttaagctggacatttgggacaaaaaaaaaattgtacagagattgtaggctcttgggacaatcacaaggttgccgtacgatttccgtgcggattgcatgattttcgtacaatctccgcacagcctctgtatgactatgccttggcctgcccccgtgggcccgtacaagaaaccgcataatgcccgcacacaatgtgaacatatatgttgtagccaactatgatgcttaaaaaatcgtacggaaaatcatagacccatttatcgcatggcgcccggggc
gi|6 : cttattcacatttggcctgcgattggtctaagcccgtatcctgtcggtatccccctttcagtgtggaggcaggaggctttcgtgagttttttgtacaggctctgcggcatccatgattttgtttagggagaagaaaattgtaaacccatatacatgtcttaggtggcattgcgcaatctccgctcggtaccacgctgagtccgtgcgctgatcatgcagaaaacacaagatttaagctggacatttgggacaaaaaaaaaattgtacagagattgtaggctcttgggacaatcacaaggttgATTGCATGA-TTTTCGTACAATCTCCGCACAGCCTCTGTATG-ACTATGCCTTGGCCTGCCCC-CGTGGGCCCGTACAAGAAACCGCATAATGCCCGCACACAATGTGAACATATATGTTGTAG---CC---A--ACTATGATG----C--------T------TAAAAAA-TCGT--ACGGAAAATCATAGACCCATTTATCGCATGGCGCCCGGGGCttgcatgattttcgtacaatctccgcacagcctctgtatgactatgccttggcctgcccccgtgggcccgtacaagaaaccgcataatgcccgcacacaatgtgaacatatatgttgtagccaactatgatgcttaaaaaatcgtacggaaaatcatagacccatttatcgcatggcgcccggggc
gi|7 : cttattcacatttggcctgcgattggtctaagcccgtatcctgtcggtatccccctttcagtgtggaggcaggaggctttcgtgagttttttgtacaggctctgcggcatccatgattttgtttagggagaagaaaattgtaaacccatatacatgtcttaggtggcattgcgcaatctccgctcggtaccacgctgagtccgtgcgctgatcatgcagaaaacacaagatttaagctggacatttgggacaaaaaaaaaattgtacagagattgtaggctcttgggacaatcacaaggttgccgtacgatttccgtgcggCCTCCATGTGGAGGCAGGAGGTGGCCGTGAGATTTTCGTACAGATTCAAGGGCACCAAG--------GATATTGTTTAGCGAGATTTTAT--ACAAATCT--GTAAAAA--ATCGTA-------AGCCCGTAGACATGTCGTAGGTGGCATT------------CA-TG-----GGCAACGTG-----------CGGAGGCTGCGTGCTTA-TCATGC-A---GAATACGCA-AG-----A----T-TT--T--AGGTAGACATT---GGGGGAAAAAAAAATAC----GG----AGAT---TGTA-GGCTC--TT--GCACAGC--T-----AC---CGC-AAGGTTGC--------CACTCG--CTG--CCCCTGCGA-AG---A-----CTGCA--CG-GCA--ACTGCACTGAAATTGCACAATTTC---TGTACAATC--TCCACGC-------AGCCATAA-GGC--TTTGCCCCAGC-CTGC-C----CACAAGGGCCAGTAAGAGAAATCGCATGA-TGCTCGTACA
gi|7 : C--TGCG---AAGA-CTGCAC----GGCAACTG-CACT----GAAATTGCACAA-TTTCTGTACAATCTCCACGCAGCC---ATAAG-GCTTTGCCCCAGCCTGCCCA-CAAGGGCCAGTAAGAGAAATCGCATGATGCTCGTACATTATGTGAACACATACGCCGTAGT--CT-GTA--GCCACCTATGATGC--------C------TCAAAAATTCGT--ACGGAAAATAGTATA-CCATTTATCACACAGCGCCTGGGACAATTGTGAttatgtgaacacatacgccgtagtctgtagccacctatgatgcctcaaaaattcgtacggaaaatagtataccatttatcacacagcgcctgggacaattgtgaaccaggc
gi|8 : cctccatgtggaggcaggaggtggccgtgagattttcgtacagattcaagggcaccaaggatattgtttagcgagattttatacaaatctgtaaaaaatcgtaagcccgtagacatgtcgtaggtggcattcatgggcaacgtgcggaggctgcgtgcttatcatgcagaatacgcaagattttaggtagacattgggggaaaaaaaaatacggagattgtaggctcttgcacagctaccgcaaggttgccactcgctgcccCCTAATTCACATTT-GGCCTACGATGGGTCTACGGTGTCTGTATCCTGC--CTGTATCCTACTTTC-TGTGGG--GTCTCCATGTGG-------AGGCAG----GAGGCT-------------------GCTGCGACCTCTACGATTTCGTTTAGCGAGTAGTTAT--ACAAATTT--G-AAAAA--AATGTAAGCCCGTAGCCAGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCACA-CG-----GGCACCGCG-----------CAGAAGCTGCACGCTGA-TTGTGC-A---GAA-----A-AC-----accaggc
gi|8 : gG--C----ACGG-CC---T-----TCGCA--CA-GCT--ATTGCAAGG-----GC------TC---CATATGATT--TCCATGC-------GA-----A-G--------------A-CTGTAC----GGCAACTG-CACT----GAAA---------TTTC---ACGATTTC-----------TGTACAAGCT----------------C-CGATGGCCCGTTTGAGAAATCGCACAATGCTCGTACTCAATGTGAACACATACACCGTAG---CC---A--CCTACGATG----C--------C------TAAAAGA-TTAT--gcaagatttaaggtggacatgggggaaaaacaaaatcaaacagagattttaggctcttgggacaaagtgcacggccttcgcacagctattgcaagggctccatatgatttccatgcgaagactgtacggcaactgcactgaaatttcacgatttctgtacaagctccgatggcccgtttgagaaatcgcacaatgctcgtactcaatgtgaacacatacaccgtagccacctacgatgcctaaaagattata
gi|9 : gcctaattcacatttggcctacgatgggtctacggtgtctgtatcctgcctgtatcctactttctgtggggtctccatgtggaggcaggaggctgctgcgacctctacgatttcgtttagcgagtagttatacaaatttgaaaaaaatgtaagcccgtagccagtagacatgtcgtaggtggcattgcgcaatccccacacgggcaccgcgcagaagctgcacgctgattgtgcagaaaacgcaagatttaaggtggacatgggggaaaaacaaaatcaaacagagattttaggctcttgggacaaagtCCTAATTCACATTT-GGCCTGCGATGGGTCTATGGAGCCCGTATCCTGC--CCGTTTTCGCCTTTC-CGTGCG--GCGTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGAG-----------TTTGTTAAGCGAGAAGTTAT--ACAAATTTAAA-AAAAA--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCACA-CG-----GGCACCGCG-----------CGGAGGCAGCGCGCTGA-TCGTGC-A---GAA-----A-ACGCAAGA----T-TT--T--AGGTGGACATT---GGGG------------CAAA-AA----AAAT---CGTACGGAGA--TT--GTAGGCT--CTTGGGACAGTCGC-A------CAGCTATCACA-TGTTGCCGCTC----GCTG-CCGGTT-----CAGTAACCGTGAA--ATCGCACGG-----AT-----------------ATTGATCAGT-C--------------A-TCC--CGCA---GCAA-CCGCA-------CAACAG-CACG----GCGGCTGCACGG-TCACCGCACCATCTCCGCGCAGCCTCTGCACG-G
Alignments
lowQualScore : 11111111111 3 3333333333333333 111111111111 666666666666666666666666666666666666666 111111111 1111111 2222222222222222222222 2222222 777777777777777777777777
lowQualScore : 2 33 2 33 1 3 3 44 0 44 3 44 0 2 77777 0 2 33333333333 0 2 2 3 6666 44 555 3 999 5555555555555555 44 333333333333 4 44 44 1 000000000000000000000000000000000000000 44 1 3 000000000 1 44 55 88888 0 4 6666666 0 4 55 9999999999999999999999 3 6666 2 2 2 0 3 2222222 33 666666666666666666666666 0 2 33
lowQualScore : . .. . .. . . . .. . .. . .. . . ..... . . ........... . . . . .... .. ... . ... ................ .. ............ . .. .. . ....................................... .. . . ......... . .. .. ..... . . ....... . . .. ...................... . .... . . . . . ....... .. ........................ . . ..
lowQualScore : 9 99 9 99 6 7 6 22 5 22 1 22 6 9 11111 1 4 66666666666 1 7 7 1 5555 55 333 3 222 7777777777777777 22 222222222222 0 22 22 8 777777777777777777777777777777777777777 22 2 1 666666666 7 22 77 66666 1 4 9999999 4 5 00 7777777777777777777777 1 5555 9 9 9 2 1 2222222 99 777777777777777777777777 1 9 99
consensus : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTT--ATACAAATTT--G-AAAAA--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCGCA-CG-----GGCACCGCG-----------CGGAGGCCGCGCGCTGA-TCGTGC-AGAAAACGCA-AGAT----TTTAGGC--GGACATT---GGGG-----C----GA----AA--A-----C---CGCACGGAGG--TT--GTAGGCT--C-----NT---CGC-AC--------NATCT--CCG--CGCGG-CC---T-----CTGCA--CG-GA-A--ACCGCACGGNTTC---CGTACGATT--TCCGTGC-------GGA-GGC--TGCG-GAGA-CTGCAC----GGCAACTGCACT-GAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC-GTA--GCCAC--------C--------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTTATCGCACGGCGCCCGGGGCAAATGTGA
Reference ( family-5232 ) : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTT--ATACAAATTT--G-AAAAA--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCGCA-CG-----GGCACCGCG-----------CGGAGGCCGCGCGCTGA-TCGTGC-AGAAAACGCA-AGAT----TTTGNGC--GG-CATT---GGGG-----C----GG----AA--A-----C---CGCACGGNGG--CT--GCACGNT--C-----AC---CGC-AC--------CATCT--CCG--CGCGG-CC---T-----CTGCA--CG-GA-A--ACCGCACGGGCTC---CGTACGATT--TCCGTGC-------GGA-GGC--TGCG-GAGA-CTGCAC----GGCAACTGCACT-GAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC-GTA--GCCAC--------C--------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTTATCGCACGGCGCCCGGGGCAAATGTGA
gi|1 : CCGAATTCACATTT-GACCTGCAATGGGTCTACGGAGCCCGTATCCTGC--CCATATTCCACTTTC-CGTGCG--GCATCTGTGCGGAGGCAGGAAGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTTGCGAGAAGTT--ATACAAATTT--G-AAAAA--ATCGTAAGCCCGTATTCCGTAGACAAGTCATAGGGGGTATTGGGCAATCCCCGCA-CG-----GGCACTACG-----------CGGAGGCCGCTTGG-GACTCGGAC-A-----CTCA-AAATCATCTCCGCGC--AG-CCTC---TGCA-----C----GG----AA--G-----C---CACACGG--G--CTCAGTACGATTNN-----NN---NNN-NN--------NATCT--CCG--CGCAG-CC---T-----CTGCA--CG-GA-A--GCCACACGGGCTC---AGTACGATT--TCCGTGC-------GGA-GGC--TGCG-GAGA-CTGCAC----TGTAACTGCACT-GTAATTGCACGA-TTTCCGTACAATCTCCGCACAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATATGCCGT-----------------------------------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCGTTTATCGCACGGCTCCCGGGGCAAATGTGA
gi|10 : TTAGTTTAGCGAGAA-----------ATTT--G-AAAAA--ATCGTTAGCCCGTAGCCCGTAGAAGTGTCGTAGGTGG-ATTGCACAATCCCCGCA-CG-----GGCACCGCG-----------AAGAGGCCGCGCGCTGA-TCGTGC-AGA------A-AGAT----ATTAAGC--GGATATTAGGGGGG-----A----GG----GG--A-----T---CGTACGGAGA--TT--ATAGGCT--C-----TT---TGG-AC--------AAT-----CG--CACGGTCC---T-----C-GCA--C---A-ACTATCGCAAGGTTGC---CACTCGCTG--CCTGTGC---------A-GTC--AGCGTGAAA-TCGCAC----AGATACTGAGCA-GTCATCCCGTGGCTTTCCTTACAATCTCCGTGCAGCTTCTGCAAG-GCTTTGCCCCTGCCTTGTCC-CGAGAACCCGTACCAGAAATTGCACGATGCTCGTACATAATGTAAATACATACGCCGTAG---CCTGTA--GCCAC--------C--------T------ACAA-----TGC--CTCAAAAATCGTAGATCCATTTATCGGACGGtc
gi|11 : CCTGATTCACATTT-GGCCTGCGATGGGTTTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCA--GCATCCATGCGGAGACGGGAGGCGGCCGTGAGATTTTCGTATTGATTCACGGGCACCGCGGCCTCTACGACTTTGTTTAGCGAGAAGTT--ATACAAATTT--G-AAAAA--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGTAATCCCCGCA-CG-----GGCATCGCG-----------CGGAGGCCGCGCGCTGA-TCGTGC-AGAAAACGCA-AGAT----TTTAGGT--GGACATT---GGGG-----G----GGAAAAAA--A-----T---TGGACGGAGGAATT--GTAGGCT--C-----TT---GGG-AC--------AATCT---CA--CA-GG-CC---T-----C-GCA--CA-GC-T--ATCGCAAGGt
gi|12 : tgatg--A-----C---AGCACGGCGG--CT--GCACGGT--C-----AC---CGC-AC--------CATCT--CCG--CGCAG-CC---T-----CTGCA--CG-GA-A--GCCGCATGGGCTT---CGTACGATT--TCAATGC-------GGA-GGC--TAAG-GAGA-CTGCAC----GGCAACTGCACT-GAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTAAG-GCTTTGCCCCGGCCTGCCCC-CGAGGGTCCGTACGAGAAATCGTACGATGCTCGTACACAATGTGAACACATACGCCGTAGC--CC-GTA--GTCACCTATGATGC--------C------TCAAAAA-TCGT--ACGGGAAATCGTAGACCCATTTATCACACGGCGCCCGGGGCAAATGTGAttgctgctcactgccggagcagtaaccgtgaaatcgcactgatattgagcagt
gi|13 : CGCA-AG-----GTTGCCGCT-----------CGCAGCCCGTGCAGTAA-CCGTG----AAATGGCACGGAT----ATTGAGC--AGTCATC---CCG------C----GC----AA--A-----C---C-CACAGCGG--C-----------------------CGC-AC--------CATGG--CCG--TGCAG-CC---T-----CTGTA--CG-Gaccaggca
gi|13 : ctatCCGCACCATGGCCGTGCAGCCTCTGTACG-GCTTTGCCTCGACCTACCCCCCGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCTTAT---CCTGTA--GCCACCTACGATGC--------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTTATCGCGCGGCGCCCGGGGTAAATGTGActttgcctcgacctaccccccgagggcccgtacgagaaatcgcacgatgctcgtacacaatgtgaacacatacgccttatcctgtagccacctacgatgcctcaaaaatcgtacggaaaatcgtagacccatttatcgcgcggcgcccggggtaaatgtgaac
gi|14 : ctatcgcaaggttgccgctcgcagcccgtgcagtaaccgtgaaatggcacggatattgagcagtcatcccgcgcaaacccacagcggGA-CTGCAC----GGCAACTGCACT-GAAATTGCACGA-TTTCCGTACAATCTTCGCGCAGCCTCTGTAAG-GCTTTGTCCCGG-CTGCCTC-CGAGGGCC----------------CGATGCTCGTACACGATGTAAACACATACGCCG-AGGC-CC-GTA--GCCAC--------CTACGATGTT------TCAAAAA-TCGT--AAGGAAAATCGTAGACCCATTTAGCGCACGGGGCCCGGGTCAAATGTGAac
gi|15 : cactggccaatggatgattgtatcgggaccgcgatttagttgttCCTAATTCACATTT-GGCCTGCGATTGGTCTACGGAGCCCGTATCATGT--CCGTATCCCGCTTTC-CGTGCG--GCCTCCGTG---------------------AGATTTTCGCACGGAAATACGGTAGCCGCGGCCTCTACGATTTTGTT-AGCGAAAAGTT--TTAAAAAACT--G-AAAAATAATCGT-------TAGCCCATAC-CATGTCGTGGGTGGCATTGCACAATCCCCGCA-CG-----GGAACCTCG-----------CGGAAGCCGCACGCTGA-TCGTGC-AGAAAACGCaccaggcat
gi|16 : tgAGA-CTGCAC----TGCAACTGCAAT-ATAATTGCATGA-TTTCCATACAACCTCTGCGCAGCCTCTGTACG-GCTTTGCCACGGCCTG-CCC-CGAGTGCTTGTACAAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC--TAATACCACCTACGATGC--------C------TCTAAAA-TCGT--ACGGAAAATCGTAGACCCATTTATCACATGGCATCCGGGGCAAATGTGA
gi|17 : CCTAATTAACATTT-GGCCTGCGATGGGTCTATGGAGCCCGTATCC-------------CCCTTCC-CGTGCG--G------------------------CCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGAATTTGTTAAGCCAGAACTT--ATACAAATTT--G-AAAAA--ATCGTA-------AGCCCGTAGACATGTCGTAGGTGGCATTTCGCAATCCCCGCA-CG-----GGCA----------------------CCGCGCGCTGA-TCTTGC-AGAAAATGCaccaggca
gi|18 : tgATTTACATTTTGGCCTGCGATGGGTCTACGGAGCCCTTATCCTGCGGCC-----------TC-CGTGCG--GTCTCt
gi|18 : tgctttGCGGTCTCTACGATTTTGTTTAGCGATAAGTT--ATACAAATTT--G-AAAAA--AATGTTAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCAGTGCGCAATCCCCGCA-TG-----G--------------------GAAG--TGCGCGCTGA-TCGTGC-AGAAAACGCA-AGCT----TTTAGGT--Gtacgattttgtttagcgataagttatacaaatttgaaaaaaatgttagcccgtagcccgtagacatgtcgtaggtggcagtgcgcaatccccgcatgggaagtgcgcgctgatcgtgcagaaaacgcaagcttttaggtg
gi|19 : tgctttatttacattttggcctgcgatgggtctacggagcccttatcctgcggcctccgtTAATTCACAATG-GGCCTGCAATGAGGCTACGGAGCCCGTATCCTGC--CCGTATCCACCTTTCACCTACGATGCCT
gi|19 : --------C--------C------T-AAAAA-TAGT--ACGGACAATCGTAGACC-ATTTATCGCACGGTGCCCGCGGCAAATGTGAaaaaatagtacggacaatcgtagaccatttatcgcacggtgcccgcggcaaatgtgaaccaag
gi|2 : taattcacaatgggcctgcaatgaggctacggagcccgtatcctgcccgtatccacctttcacctacgatgCCTAATTCACATTT-TGCCTGCAATGGGTCTAGGGAGCCCGTATCCTGT--CCGTATCCCCCTTTT-TGTGTA--GCCTCCGTACGGAGGCAGGAGGCGGCCGTGAGATTTTCCTACTGATTCACGGGCGCTACGGCCTCTACGATTTTGTTTAGCGAGAAGTT--AAGC-AATTT--T-AAAAA--ATCGTCAGCCCGTAGCCCGTAGAC--GTCATAGaccaag
gi|2 : gtgTGA-TCATGC-AGATAACGCA-AGAT----ATTAGAT--GGGCATT---GGGG-----A----AA----AA--A-----T---CTTACGGAGA--TT--GTAGGCT--C-----TT---GGG-AC--------AATC-----G--CACGG-CC---C-----TTGCA--CA-GC-C--ATCGCATTTATTTTTTCGT--GATT--TCCGTGC-------GGA-TGC--TGCG-GAGA-CTGCAC----GGCAACTGCACT-GAAATTGCATGA-TTTCCTTAAAATCTCCGCGCAGCCTCTGTACG-GCTTTGCACCGGCCTGTCCC-CGAGGGCCCGTAAGAGAAATCGCACGATGCTCGTACACAATGTGCTCACATACGCCGTAGC--CC-GTA--GCCAC--------CTACGATG-C------CTAAAAA-TCGT--ATGGAAAATCGTAGACCCATTTATCTCACGGCGCCCGGGGCAAATGTtgatcatgcagataacgcaagatattagatgggcattggggaaaaaatcttacggagattgtaggctcttgggacaatcgcacggcccttgcacagccatcgcatttattttttcgtgatttccgtgcggatgctgcggagactgcacggcaactgcactgaaattgcatgatttccttaaaatctccgcgcagcctctgtacggctttgcaccggcctgtccccgagggcccgtaagagaaatcgcacgatgctcgtacacaatgtgctcacatacgccgtagcccgtagccacctacgatgcctaaaaatcgtatggaaaatcgtagacccatttatctcacggcgcccggggcaaatgttaacct
gi|20 : gtgcctaattcacattttgcctgcaatgggtctagggagcccgtatcctgtccgtatccccctttttgtgtagcctccgtacggaggcaggaggcggccgtgagattttcctactgattcacgggcgctacggcctctacgattttgtttagcgagaagttaagcaattttaaaaaatcgtcagcccgtagcccgtagacgtcatagAAATCACACG-TGCTCGTACACAATGTGAACACATACGCCATAG---CCAGTA--GCCAC--------C--------TATGATGCCGAAAT-TTTTTTACGGAAAATCGTAGACCCATTTATTGCATGGCGCCCGGGGCAAATGTGAtaacct
gi|21 : TAATTCACATTT-GGCCTTCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATTCCCCTTTC-CGTGCG--GCCacgaggca
gi|3 : tCCTAATTCACATTT-GGCCTACACTGGGTCTACGG-----GTAACCTGC--CCGTATCCCACTTTC-CGTGCG--GCCTCCGTGTGGAGGCAGGAGGCGGCCGTGAGATTTTTGAACGGATTCACGCGCGCCGCGGCCTCTACGATTTTGT-----------TT--ATACAAATTT--G-AAAAA--ATCGTAAGTTCGTGGCCCGTAAACATGTCGTTGATGGCATTGAGCAATCCCCATGTCGTTGATGGCAAT----------------GAGACCGGGCGCTGA-TCGTGCAAAAAAACGCA-AGAT----TTTAGGT--GGCCATT---GGGG-----C----AA----AA--A-----CAATCGTACGGAGA--TT--GCAGGCT--C------T---TGTGAC--------AAT-----CG--AACGG-CTA--TCGCAACTGTA--CT-GA-A--AGTGCACAATTCC---CGTACAATC--TCTGCGCAACCTCTGTACGGCATTGCT-CAGGCCTGCCCCGGGGGC--CCGTACGAGAAATCGCACGA-TGCTCGTACA
gi|3 : tgGCAACTGTACT-GAAAGTGCACAA-TTCCCGTACAATCTCTGCGCAACCTCTGTACG-GCATTGCTCAGGCCTGCCCC--GGGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC---A--CCTACGATG----C--------C------TAAAAAA--AGT--ACGAAAAATCGTATATCCATTTATCGCACGGCGCCCATGGCAAATGTGAcaatgtgaacacatacgccgtagccacctacgatgcctaaaaaaagtacgaaaaatcgtatatccatttatcgcacggcgcccatggcaaatgtgaatcaggca
gi|4 : tgcctaattcacatttggcctacactgggtctacgggtaacctgcccgtatcccactttccgtgcggcctccgtgtggaggcaggaggcggccgtgagatttttgaacggattcacgcgcgccgcggcctctacgattttgtttatacaaatttgaaaaaatcgtaagttcgtggcccgtaaacatgtcgttgatggcattgagcaatccccatgtcgttgatggcaatgagaccgggcgctgatcgtgcaaaaaaacgcaagattttaggtggccattggggcaaaaacaatcgtacggagattgcaggctcttgtgacaatcgaacggctatcCCTAATTCACATTT-GGCCTGCGATGGGTTTACGT-GCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCTTGTGGAGGCAGGAGGCGGCCGTGAGCTTTTCGTACGGATTCATGGGCACCTCGGCCTCTACGATTTTGTTAAGCGAGAAGTTTGA-ACAAATTT--G-AAAAA--ATCGTAAGCCTGTAGCCCGTAGTCATGTCGTAGGTGGCAATGTGCAGCCCCCGCA-CA-----GGCACTGCG-----------CGGAGGTCACGCGCTGA-TCGTCA-AGAAACTGCA-AGAT----TTAAGGT--GAACATT---GGGT-----A----AA----AA--A-----C---GGCACGGCGG--CT--GCACGGT--C-----AT---CGC-AC--------CAGCT--CCG--CACAG-CC---T-----CTGCA--CG-GA-A--GCCGCACGG--------------TT--TCCGTGC-------GGA-G------------A-ATGCAC----GGCAACTGCATT-GAAATTGC----------GTACAATTTTCGCGTAGCCTCTGTACG-GCTTTGCCCCGGCCTGTCCC-CGAAGGCCCGTACGAGAAATTGCACGCTGCTTGCACACAATGTGAACACCTACGCCGTA------------GCCatcaggca
gi|5 : ataCCTAATTCACATTT-GGCCTGCGATGGGTCTACAGAGCCC-------------GTATCCCCCTTTC-CGTGCG--GCCTCCATGCAGAGGCAGGAGGTGACCGTGAGATTT--GTACGGATTCACGGGCA---------CTACGATTTTGTTAAGTG-GAAGcgt
gi|5 : ttatgCA-CG-----GGCACTACGATTTTGTTAAGTGGAAGCCGCACGCTGA-TCTTCC-AGAAAATGCA-AGAT----TTTAGGT--GAACATT---GGGG-----CTCAAAA----AA--A-----C---GGCACGGCGG--CT--ACACGGT--C-----AC---CGC-AC--------CATCT--CCA--TGCAG-CC---T-----CTGCA--CT-GT-A--GCCACATGGGCTC---CATATGATT--TCTGTGT-------GGA-GGC--TGCG-GAGA-CTGCAT----GTCTACTGCACT-GAAATTGCACAA-TTTCTGTACAATCTCCG-ACAGTCTCTGTACA-GCTTTGCCTCGGCCTTCACC-CGAGGG-CCGTACAAGAATTGGCATGATGCTCATACACAATGTGAACACAT--GTTGTAGCCACC-GTA--ACGATG-------C--------C------TCAAAAT-TCAT--ATGGAAAATCAAACATCCCTTTATCACACAGCGCCCAGGGCAAATGTGAccgcacgctgatcttccagaaaatgcaagattttaggtgaacattggggctcaaaaaaacggcacggcggctacacggtcaccgcaccatctccatgcagcctctgcactgtagccacatgggctccatatgatttctgtgtggaggctgcggagactgcatgtctactgcactgaaattgcacaatttctgtacaatctccgacagtctctgtacagctttgcctcggccttcacccgagggccgtacaagaattggcatgatgctcatacacaatgtgaacacatgttgtagccaccgtaacgatgcctcaaaattcatatggaaaatcaaacatccctttatcacacagcgcccagggcaaatgtgaaccaggta
gi|6 : ttatgcctaattcacatttggcctgcgatgggtctacagagcccgtatccccctttccgtgcggcctccatgcagaggcaggaggtgaccgtgagatttgtacggattCTTATTCACATTT-GGCCTGCGATTGGTCTA---AGCCCGTATCCTGT--CGGTATCCCCCTTTC-AGTGTG--G-----------AGGCAGGAGGCTTTCGTGAGTTTTTTGTACAG--------GCTCTGCGGCATCCATGATTTTGTTTAGGGAGAAG--------------------AAA--ATTGTAAACCCATA-----TA--CATGTCTTAGGTGGCATTGCGCAATCTCCGCT-CG-----G-TACCACG-----------CTGAGTCCGTGCGCTGA-TCATGC-AGAAAACACA-AGAT----TT-AAGCTGGA-CATTT--GGGA-----C----AA----AA--AAAAAAT---TGTACAGAGA--TT--GTA----------------------------------------------GG-CT---C-----TTG-----G-GACA--ATCACAAGGTTGC---CGTACGATT--TCCGTGC-------G---------------GA-TTGCAT----G---ATT----T-----TCGTACAA-TCTCC-----------GCACAGCCTCTGTATG-ACTATGCCTTGGCCTGCCCC-CGTGGGCCCGTACAAGAAACCGCATAATGCCCGCACACAATGTGAACATATATGTTGTAG---CC---A--ACTATGATG----C--------T------TAAAAAA-TCGT--ACGGAAAATCATAGACCCATTTATCGCATGGCGCCCGGGGCaccaggta
gi|7 : CCTCCATGTGGAGGCAGGAGGTGGCCGTGAGATTTTCGTACAGATTCAAGGGCACCAAGG--------ATATTGTTTAGCGAGATTTT--ATACAAATCT--GTAAAAA--ATCGTAAGCCCGTAG-------ACATGTCGTAGGTGGCATT------------CA-TG-----GGCAACGTG-----------CGGAGGCTGCGTGCTTA-TCATGC-AGAATACGCA-AGAT----TTTAGGT--AGACATT---GGGG----------GA----AAAAA-----A---AATACGGAGA--TT--GTA----------------------------------------------GG-CT---C-----TTGCA--CA-GC-T--ACCGCAAGGTTGC---CACTCGCTG--CCC-----------------C--TGCG-AAGA-CTGCAC----GGCAACTGCACT-GAAATTGCACAA-TTTCTGTACAATCTCCACGCAGCC---ATAAG-GCTTTGCCCCAGCCTGCCCA-CAAGGGCCAGTAAGAGAAATCGCATGATGCTCGTACATTATGTGAACACATACGCCGTAGT--CT-GTA--GCCACCTATGATGC--------C------TCAAAAATTCGT--ACGGAAAATAGTATA-CCATTTATCACACAGCGCCTGGGACAATTGTGA
gi|8 : CCTAATTCACATTT-GGCCTACGATGGGTCTACGGTGTCTGTATCCTGC--CTGTATCCTACTTTC-TGTGGG--GTCTCCATGTGG-------AGGCAG----GAGGCT-------------------GCTGCGACCTCTACGATTTCGTTTAGCGAGTAGTT--ATACAAATTT--G-AAAAA--AATGTAAGCCCGTAGCCAGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCACA-CG-----GGCACCGCG-----------CAGAAGCTGCACGCTGA-TTGTGC-AGAAAACGCA-AGAT----TTAAGGT--GGACATG---GGGGAAAAAC----A-----AA--A-----T---CAAACAGAGA--TT--TTAGGCT--C-----TT---GGG-AC--------AAAGT----G--CACGG-CC---T-----TCGCA--CA-GC-T--ATTGCAAGGGCTC---CATATGATT--TCCATGC-------GAA-G------------A-CTGTAC----GGCAACTGCACT-GAAA---------TTTC---ACGATTTC-----------TGTACAAGCT----------------C-CGATGGCCCGTTTGAGAAATCGCACAATGCTCGTACTCAATGTGAACACATACACCGTAG---CC---A--CCTACGATG----C--------C------TAAAAGA-TTAT--accaggc
gi|9 : gCCTAATTCACATTT-GGCCTGCGATGGGTCTATGGAGCCCGTATCCTGC--CCGTTTTCGCCTTTC-CGTGCG--GCGTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGAG-----------TTTGTTAAGCGAGAAGTT--ATACAAATTTAAA-AAAAA--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCACA-CG-----GGCACCGCG-----------CGGAGGCAGCGCGCTGA-TCGTGC-AGAAAACGCA-AGAT----TTTAGGT--GGACATT---GGGG-----CAAA-AA----AA--A-----T---CGTACGGAGA--TT--GTAGGCT--CTTGGGACAGTCGC-ACAGCTATCACATGTTGCCGCTCGCTG-CCGGTT-----CAGTAACCGTGA-A--ATCGCACGGAT-----------ATTGATCAGT-C---------A-TCC--CGCA-GCAA-CCGCA-------CAACAGCACG-GCGGCTGCACGG-TCACCGCACCATCTCCGCGCAGCCTCTGCACG-G
Alignments
lowQualScore : 11111111111 555555555555555555555555555 11111111 11111111111 3333333333 11111111111 111111111 33333333333333333 2222222 777777777777777777777777
lowQualScore : 2 33 2 33 1 3 3 44 0 3 44 44 0 3 77777 0 3 44444444444 2 2 44 666 3 3 555 000000000000000000000000000 00000000 2 44 44 44 44444444444 4 555 2 0000000000 44 0 1 3 55555555555 44 222222222 4 1 3 666 6 55 1 44444444444444444 3 3 6666 2 2 2 0 3 2222222 33 666666666666666666666666 0 2 33
lowQualScore : . .. . .. . . . .. . . .. .. . . ..... . . ........... . . .. ... . . ... ........................... ........ . .. .. .. ........... . ... . .......... .. . . . ........... .. ......... . . . ... . .. . ................. . . .... . . . . . ....... .. ........................ . . ..
lowQualScore : 9 99 9 99 6 7 6 22 5 1 22 22 6 1 77777 8 3 66666666666 7 7 22 555 3 3 888 777777777777777777777777777 55555555 2 22 22 22 77777777777 3 444 1 5555555555 22 5 2 1 66666666666 22 000000000 4 0 4 444 8 00 2 44444444444444444 6 1 5555 9 9 9 2 1 2222222 99 777777777777777777777777 1 9 99
consensus : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTT--ATACAAATTTG-AAAA--A--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCGCA-CG-----GGCACCGCG-----------CGGAGGCCGCGCGCTGA-TCGTGC-AGAAAACGCAAGAT--TTTAGGT--GGA-CA-TT---GGG----------G-----C-----G----AAAAC---CG--CACGGAGG--TT--GTAGGCT--C--------TTCGGA---CNATC---T----CCG--CGCGG-CC---T-----CTGCA--CG-GAA--ACCGCACGGNTTC---CGTACGATT--TCCGTGC-------GGA-GGC--TGCG-GAGA-CTGCAC----GGCAACTGCACT-GAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC-GTA--GCCAC--------C--------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTTATCGCACGGCGCCCGGGGCAAATGTGA
Reference ( family-5232 ) : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTT--ATACAAATTTG-AAAA--A--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCGCA-CG-----GGCACCGCG-----------CGGAGGCCGCGCGCTGA-TCGTGC-AGAAAACGCAAGAT--TTTAGGC--GGA-CA-TT---GGG----------G-----C-----G----AAAAC---CG--CACGGAGG--TT--GTAGGCT--C--------NTCGCA---CNATC---T----CCG--CGCGG-CC---T-----CTGCA--CG-GAA--ACCGCACGGNTTC---CGTACGATT--TCCGTGC-------GGA-GGC--TGCG-GAGA-CTGCAC----GGCAACTGCACT-GAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC-GTA--GCCAC--------C--------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTTATCGCACGGCGCCCGGGGCAAATGTGA
gi|1 : CCGAATTCACATTT-GACCTGCAATGGGTCTACGGAGCCCGTATCCTGC--CCATATTCCACTTTC-CGTGCG--GCATCTGTGCGGAGGCAGGAAGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTTGCGAGAAGTT--ATACAAATTTG-AAAA--A--ATCGTAAGCCCGTATTCCGTAGACAAGTCATAGGGGGTATTGGGCAATCCCCGCA-CG-----GGCACTACG-----------CGGAGGCCGCTTGG-GACTCGGAC-A-----CTCAAAATCATCTCCGC--GCAGCC-TC---TGC----------A-----C-----G----GAAGC---CA--CACGG--G--CTCAGTACGATTNN--------NNNNNN---NNATC---T----CCG--CGCAG-CC---T-----CTGCA--CG-GAA--GCCACACGGGCTC---AGTACGATT--TCCGTGC-------GGA-GGC--TGCG-GAGA-CTGCAC----TGTAACTGCACT-GTAATTGCACGA-TTTCCGTACAATCTCCGCACAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATATGCCGT-----------------------------------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCGTTTATCGCACGGCTCCCGGGGCAAATGTGA
gi|10 : TTAGTTTAGCGAGAA-----------ATTTG-AAAA--A--ATCGTTAGCCCGTAGCCCGTAGAAGTGTCGTAGGTGG-ATTGCACAATCCCCGCA-CG-----GGCACCGCG-----------AAGAGGCCGCGCGCTGA-TCGTGC-AGA------AAGAT--ATTAAGC--GGA-TA-TTAGGGGG----------G-----A-----G----GGGAT---CG--TACGGAGA--TT--ATAGGCT--C--------TTTGGA---CAAT----------CG--CACGGTCC---T-----C-GCA--C---AACTATCGCAAGGTTGC---CACTCGCTG--CCTGTGC---------A-GTC--AGCGTGAAA-TCGCAC----AGATACTGAGCA-GTCATCCCGTGGCTTTCCTTACAATCTCCGTGCAGCTTCTGCAAG-GCTTTGCCCCTGCCTTGTCC-CGAGAACCCGTACCAGAAATTGCACGATGCTCGTACATAATGTAAATACATACGCCGTAG---CCTGTA--GCCAC--------C--------T------ACAA-----TGC--CTCAAAAATCGTAGATCCATTTATCGGACGGtc
gi|11 : CCTGATTCACATTT-GGCCTGCGATGGGTTTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCA--GCATCCATGCGGAGACGGGAGGCGGCCGTGAGATTTTCGTATTGATTCACGGGCACCGCGGCCTCTACGACTTTGTTTAGCGAGAAGTT--ATACAAATTTG-AAAA--A--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGTAATCCCCGCA-CG-----GGCATCGCG-----------CGGAGGCCGCGCGCTGA-TCGTGC-AGAAAACGCAAGAT--TTTAGGT--GGA-CA-TT---GGG----------G-----G-----GGAAAAAAAT---TG--GACGGAGGAATT--GTAGGCT--C--------TTGGGA---CAATC---T-----CA--CA-GG-CC---T-----C-GCA--CA-GCT--ATCGCAAGGTTt
gi|12 : tgatgAC---AG--CACGGCGG--CT--GCACGGT--C--------ACCGCA---CCATC---T----CCG--CGCAG-CC---T-----CTGCA--CG-GAA--GCCGCATGGGCTT---CGTACGATT--TCAATGC-------GGA-GGC--TAAG-GAGA-CTGCAC----GGCAACTGCACT-GAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTAAG-GCTTTGCCCCGGCCTGCCCC-CGAGGGTCCGTACGAGAAATCGTACGATGCTCGTACACAATGTGAACACATACGCCGTAGC--CC-GTA--GTCACCTATGATGC--------C------TCAAAAA-TCGT--ACGGGAAATCGTAGACCCATTTATCACACGGCGCCCGGGGCAAATGTGAgctgctcactgccggagcagtaaccgtgaaatcgcactgatattgagcagt
gi|13 : GCCGCTCGCAGC-CCGTGC-AGTAACCGTGAAAT------GGCACGGA-TA-TT---GAGCAGTCATCCCG-----C-----G----CAAAC---C---CACAGCGG--C-----------------------CGCA---CCATG---G----CCG--TGCAG-CC---T-----CTGTA--CG-Gaccaggca
gi|13 : ctatcgcaaggttCCGCACCATGGCCGTGCAGCCTCTGTACG-GCTTTGCCTCGACCTACCCCCCGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCTTAT---CCTGTA--GCCACCTACGATGC--------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTTATCGCGCGGCGCCCGGGGTAAATGTGActttgcctcgacctaccccccgagggcccgtacgagaaatcgcacgatgctcgtacacaatgtgaacacatacgccttatcctgtagccacctacgatgcctcaaaaatcgtacggaaaatcgtagacccatttatcgcgcggcgcccggggtaaatgtgaac
gi|14 : ctatcgcaaggttgccgctcgcagcccgtgcagtaaccgtgaaatggcacggatattgagcagtcatcccgcgcaaacccacagcggGA-CTGCAC----GGCAACTGCACT-GAAATTGCACGA-TTTCCGTACAATCTTCGCGCAGCCTCTGTAAG-GCTTTGTCCCGG-CTGCCTC-CGAGGGCC----------------CGATGCTCGTACACGATGTAAACACATACGCCG-AGGC-CC-GTA--GCCAC--------CTACGATGTT------TCAAAAA-TCGT--AAGGAAAATCGTAGACCCATTTAGCGCACGGGGCCCGGGTCAAATGTGAac
gi|15 : cactggccaatggatgattgtatcgggaccgcgatttagttgttCCTAATTCACATTT-GGCCTGCGATTGGTCTACGGAGCCCGTATCATGT--CCGTATCCCGCTTTC-CGTGCG--GCCTCCGTG---------------------AGATTTTCGCACGGAAATACGGTAGCCGCGGCCTCTACGATTTTGTT-AGCGAAAAGTT--TTAAAAAACTG-AAAA--ATAATCGT-------TAGCCCATAC-CATGTCGTGGGTGGCATTGCACAATCCCCGCA-CG-----GGAACCTCG-----------CGGAAGCCGCACGCTGA-TCGTGC-AGAAAACGCaccaggcat
gi|16 : tgAGA-CTGCAC----TGCAACTGCAAT-ATAATTGCATGA-TTTCCATACAACCTCTGCGCAGCCTCTGTACG-GCTTTGCCACGGCCTG-CCC-CGAGTGCTTGTACAAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC--TAATACCACCTACGATGC--------C------TCTAAAA-TCGT--ACGGAAAATCGTAGACCCATTTATCACATGGCATCCGGGGCAAATGTGA
gi|17 : CCTAATTAACATTT-GGCCTGCGATGGGTCTATGGAGCCCGTATCC-------------CCCTTCC-CGTGCG--G------------------------CCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGAATTTGTTAAGCCAGAACTT--ATACAAATTTG-AAAA--A--ATCGTA-------AGCCCGTAGACATGTCGTAGGTGGCATTTCGCAATCCCCGCA-CG-----GGCA----------------------CCGCGCGCTGA-TCTTGC-AGAAAATGCaccaggca
gi|18 : tgATTTACATTTTGGCCTGCGATGGGTCTACGGAGCCCTTATCCTGCGGCC-----------TC-CGTGCG--GTCTCt
gi|18 : tgctttGCGGTCTCTACGATTTTGTTTAGCGATAAGTT--ATACAAATTTG-AAAA--A--AATGTTAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCAGTGCGCAATCCCCGCA-TG-----G--------------------GAAG--TGCGCGCTGA-TCGTGC-AGAAAACGCAAGCT--TTTAGGT--Gtacgattttgtttagcgataagttatacaaatttgaaaaaaatgttagcccgtagcccgtagacatgtcgtaggtggcagtgcgcaatccccgcatgggaagtgcgcgctgatcgtgcagaaaacgcaagcttttaggtg
gi|19 : tgctttatttacattttggcctgcgatgggtctacggagcccttatcctgcggcctccgtTAATTCACAATG-GGCCTGCAATGAGGCTACGGAGCCCGTATCCTGC--CCGTATCCACCTTTCACCTACGATGCCT
gi|19 : --------C--------C------T-AAAAA-TAGT--ACGGACAATCGTAGACC-ATTTATCGCACGGTGCCCGCGGCAAATGTGAaaaaatagtacggacaatcgtagaccatttatcgcacggtgcccgcggcaaatgtgaaccaag
gi|2 : taattcacaatgggcctgcaatgaggctacggagcccgtatcctgcccgtatccacctttcacctacgatgCCTAATTCACATTT-TGCCTGCAATGGGTCTAGGGAGCCCGTATCCTGT--CCGTATCCCCCTTTT-TGTGTA--GCCTCCGTACGGAGGCAGGAGGCGGCCGTGAGATTTTCCTACTGATTCACGGGCGCTACGGCCTCTACGATTTTGTTTAGCGAGAAGTT--AAGC-AATTTT-AAAA--A--ATCGTCAGCCCGTAGCCCGTAGAC--GTCATAGaccaag
gi|2 : gtgTGA-TCATGC-AGATAACGCAAGAT--ATTAGAT--GGG-CA-TT---GGG----------G-----A-----A----AAAAT---CT--TACGGAGA--TT--GTAGGCT--C--------TTGGGA---CAATC----------G--CACGG-CC---C-----TTGCA--CA-GCC--ATCGCATTTATTTTTTCGT--GATT--TCCGTGC-------GGA-TGC--TGCG-GAGA-CTGCAC----GGCAACTGCACT-GAAATTGCATGA-TTTCCTTAAAATCTCCGCGCAGCCTCTGTACG-GCTTTGCACCGGCCTGTCCC-CGAGGGCCCGTAAGAGAAATCGCACGATGCTCGTACACAATGTGCTCACATACGCCGTAGC--CC-GTA--GCCAC--------CTACGATG-C------CTAAAAA-TCGT--ATGGAAAATCGTAGACCCATTTATCTCACGGCGCCCGGGGCAAATGTtgatcatgcagataacgcaagatattagatgggcattggggaaaaaatcttacggagattgtaggctcttgggacaatcgcacggcccttgcacagccatcgcatttattttttcgtgatttccgtgcggatgctgcggagactgcacggcaactgcactgaaattgcatgatttccttaaaatctccgcgcagcctctgtacggctttgcaccggcctgtccccgagggcccgtaagagaaatcgcacgatgctcgtacacaatgtgctcacatacgccgtagcccgtagccacctacgatgcctaaaaatcgtatggaaaatcgtagacccatttatctcacggcgcccggggcaaatgttaacct
gi|20 : gtgcctaattcacattttgcctgcaatgggtctagggagcccgtatcctgtccgtatccccctttttgtgtagcctccgtacggaggcaggaggcggccgtgagattttcctactgattcacgggcgctacggcctctacgattttgtttagcgagaagttaagcaattttaaaaaatcgtcagcccgtagcccgtagacgtcatagAAATCACACG-TGCTCGTACACAATGTGAACACATACGCCATAG---CCAGTA--GCCAC--------C--------TATGATGCCGAAAT-TTTTTTACGGAAAATCGTAGACCCATTTATTGCATGGCGCCCGGGGCAAATGTGAtaacct
gi|21 : TAATTCACATTT-GGCCTTCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATTCCCCTTTC-CGTGCG--GCCacgaggca
gi|3 : tCCTAATTCACATTT-GGCCTACACTGGGTCTACGG-----GTAACCTGC--CCGTATCCCACTTTC-CGTGCG--GCCTCCGTGTGGAGGCAGGAGGCGGCCGTGAGATTTTTGAACGGATTCACGCGCGCCGCGGCCTCTACGATTTTGT-----------TT--ATACAAATTTG-AAAA--A--ATCGTAAGTTCGTGGCCCGTAAACATGTCGTTGATGGCATTGAGCAATCCCCATGTCGTTGATGGCAAT----------------GAGACCGGGCGCTGA-TCGTGCAAAAAAACGCAAGAT--TTTAGGT--GGC-CA-TT---GGG----------G-----C-----A----AAAACAATCG--TACGGAGA--TT--GCAGGCT--C--------TTGTGA---CAAT----------CG--AACGG-CTA--TCGCAACTGTA--CT-GAA--AGTGCACAATTCC---CGTACAATC--TCTGCGCAACCTCTGTACGGCATTGCT-CAGGCCTGCCCCGGGGGC--CCGTACGAGAAATCGCACGA-TGCTCGTACA
gi|3 : tgGCAACTGTACT-GAAAGTGCACAA-TTCCCGTACAATCTCTGCGCAACCTCTGTACG-GCATTGCTCAGGCCTGCCCC--GGGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC---A--CCTACGATG----C--------C------TAAAAAA--AGT--ACGAAAAATCGTATATCCATTTATCGCACGGCGCCCATGGCAAATGTGAcaatgtgaacacatacgccgtagccacctacgatgcctaaaaaaagtacgaaaaatcgtatatccatttatcgcacggcgcccatggcaaatgtgaatcaggca
gi|4 : tgcctaattcacatttggcctacactgggtctacgggtaacctgcccgtatcccactttccgtgcggcctccgtgtggaggcaggaggcggccgtgagatttttgaacggattcacgcgcgccgcggcctctacgattttgtttatacaaatttgaaaaaatcgtaagttcgtggcccgtaaacatgtcgttgatggcattgagcaatccccatgtcgttgatggcaatgagaccgggcgctgatcgtgcaaaaaaacgcaagattttaggtggccattggggcaaaaacaatcgtacggagattgcaggctcttgtgacaatcgaacggctatcCCTAATTCACATTT-GGCCTGCGATGGGTTTACGT-GCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCTTGTGGAGGCAGGAGGCGGCCGTGAGCTTTTCGTACGGATTCATGGGCACCTCGGCCTCTACGATTTTGTTAAGCGAGAAGTTTGA-ACAAATTTG-AAAA--A--ATCGTAAGCCTGTAGCCCGTAGTCATGTCGTAGGTGGCAATGTGCAGCCCCCGCA-CA-----GGCACTGCG-----------CGGAGGTCACGCGCTGA-TCGTCA-AGAAACTGCAAGAT--TTAAGGT--GAA-CA-TT---GGG----------T-----A-----A----AAAAC---GG--CACGGCGG--CT--GCACGGT--C--------ATCGCA---CCAGC---T----CCG--CACAG-CC---T-----CTGCA--CG-GAA--GCCGCACGGTTTC---CGT--------------------------------GCG-GAGA-ATGCAC----GGCAACTGCATT-GAAATTGC----------GTACAATTTTCGCGTAGCCTCTGTACG-GCTTTGCCCCGGCCTGTCCC-CGAAGGCCCGTACGAGAAATTGCACGCTGCTTGCACACAATGTGAACACCTACGCCGTA------------GCCatcaggca
gi|5 : ataCCTAATTCACATTT-GGCCTGCGATGGGTCTACAGAGCCC-------------GTATCCCCCTTTC-CGTGCG--GCCTCCATGCAGAGGCAGGAGGTGACCGTGAGATTT--GTACGGATTCACGGGCA---------CTACGATTTTGTTAAGTG-GAAGcgt
gi|5 : ttatgCA-CG-----GGCACTACGATTTTGTTAAGTGGAAGCCGCACGCTGA-TCTTCC-AGAAAATGCAAGAT--TTTAGGT--GAA-CA-TT---GGG----------G-----CTCAA-A----AAAAC---GG--CACGGCGG--CT--ACACGGT--C--------ACCGCA---CCATC---T----CCA--TGCAG-CC---T-----CTGCA--CT-GTA--GCCACATGGGCTC---CATATGATT--TCTGTGT-------GGA-GGC--TGCG-GAGA-CTGCAT----GTCTACTGCACT-GAAATTGCACAA-TTTCTGTACAATCTCCG-ACAGTCTCTGTACA-GCTTTGCCTCGGCCTTCACC-CGAGGG-CCGTACAAGAATTGGCATGATGCTCATACACAATGTGAACACAT--GTTGTAGCCACC-GTA--ACGATG-------C--------C------TCAAAAT-TCAT--ATGGAAAATCAAACATCCCTTTATCACACAGCGCCCAGGGCAAATGTGAccgcacgctgatcttccagaaaatgcaagattttaggtgaacattggggctcaaaaaaacggcacggcggctacacggtcaccgcaccatctccatgcagcctctgcactgtagccacatgggctccatatgatttctgtgtggaggctgcggagactgcatgtctactgcactgaaattgcacaatttctgtacaatctccgacagtctctgtacagctttgcctcggccttcacccgagggccgtacaagaattggcatgatgctcatacacaatgtgaacacatgttgtagccaccgtaacgatgcctcaaaattcatatggaaaatcaaacatccctttatcacacagcgcccagggcaaatgtgaaccaggta
gi|6 : ttatgcctaattcacatttggcctgcgatgggtctacagagcccgtatccccctttccgtgcggcctccatgcagaggcaggaggtgaccgtgagatttgtacggattCTTATTCACATTT-GGCCTGCGATTGGTCTA---AGCCCGTATCCTGT--CGGTATCCCCCTTTC-AGTGTG--G-----------AGGCAGGAGGCTTTCGTGAGTTTTTTGTACAG--------GCTCTGCGGCATCCATGATTTTGTTTAGGGAGAAG------------------AA--A--ATTGTAAACCCATA-----TA--CATGTCTTAGGTGGCATTGCGCAATCTCCGCT-CG-----G-TACCACG-----------CTGAGTCCGTGCGCTGA-TCATGC-AGAAAACACAAGAT--TTAAGCT--GGA-CATTT---GGG----------A-----CAAAAAA----AAAAT---TG--TACAGAGA--TT--GTAGGCT--C--------TTGGGA---CAAT----------------------------------CA--C---AA---------GGTTGC---CGTACGATT--TCCGTGC-------G---------------GA-TTGCAT----G---ATT----T-----TCGTACAA-TCTCCGCACA-----------GCCTCTGTATG-ACTATGCCTTGGCCTGCCCC-CGTGGGCCCGTACAAGAAACCGCATAATGCCCGCACACAATGTGAACATATATGTTGTAG---CC---A--ACTATGATG----C--------T------TAAAAAA-TCGT--ACGGAAAATCATAGACCCATTTATCGCATGGCGCCCGGGGCaccaggta
gi|7 : CCTCCATGTGGAGGCAGGAGGTGGCCGTGAGATTTTCGTACAGATTCAAGGGCACCAAGG--------ATATTGTTTAGCGAGATTTT--ATACAAATCTGTAAAA--A--ATCGTAAGCCCGTAG-------ACATGTCGTAGGTGGCATT------------CA-TG-----GGCAACGTG-----------CGGAGGCTGCGTGCTTA-TCATGC-AGAATACGCAAGAT--TTTAGGT--AGA-CA-TT---GGG----------G-----------G----AAAAA---AAAATACGGAGA--TT--GTAGGCT--C--------TT----------------------G--CACAG-CT------------------------ACCGCAAGGTTGC---CACTCGCTG--CCC-----------------C--TGCG-AAGA-CTGCAC----GGCAACTGCACT-GAAATTGCACAA-TTTCTGTACAATCTCCACGCAGCC---ATAAG-GCTTTGCCCCAGCCTGCCCA-CAAGGGCCAGTAAGAGAAATCGCATGATGCTCGTACATTATGTGAACACATACGCCGTAGT--CT-GTA--GCCACCTATGATGC--------C------TCAAAAATTCGT--ACGGAAAATAGTATA-CCATTTATCACACAGCGCCTGGGACAATTGTGA
gi|8 : CCTAATTCACATTT-GGCCTACGATGGGTCTACGGTGTCTGTATCCTGC--CTGTATCCTACTTTC-TGTGGG--GTCTCCATGTGG-------AGGCAG----GAGGCT-------------------GCTGCGACCTCTACGATTTCGTTTAGCGAGTAGTT--ATACAAATTTG-AAAA--A--AATGTAAGCCCGTAGCCAGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCACA-CG-----GGCACCGCG-----------CAGAAGCTGCACGCTGA-TTGTGC-AGAAAACGCAAGAT--TTAAGGT--GGA-CA-TG---GGG----------GAAAAAC----------AAAAT---CA--AACAGAGA--TT--TTAGGCT--C--------TTGGGA---CAAAG---T------G--CACGG-CC---T-----TCGCA--CA-GCT--ATTGCAAGGGCTC---CATATGATT--TCCATGC-------GAA-G------------A-CTGTAC----GGCAACTGCACT-GAAA---------TTTC---ACGATTTC-----------TGTACAAGCT----------------C-CGATGGCCCGTTTGAGAAATCGCACAATGCTCGTACTCAATGTGAACACATACACCGTAG---CC---A--CCTACGATG----C--------C------TAAAAGA-TTAT--accaggc
gi|9 : gCCTAATTCACATTT-GGCCTGCGATGGGTCTATGGAGCCCGTATCCTGC--CCGTTTTCGCCTTTC-CGTGCG--GCGTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGAG-----------TTTGTTAAGCGAGAAGTT--ATACAAATTTA-AAAAAAA--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCACA-CG-----GGCACCGCG-----------CGGAGGCAGCGCGCTGA-TCGTGC-AGAAAACGCAAGAT--TTTAGGT--GGA-CA-TT---GGG----------G-----CAAA--A----AAAAT---CG--TACGGAGA--TT--GTAGGCT--CTTGGGACAGTCGCACAGCTATCACATGTTGCCGCTCGCTG-CCGGTT-----CAGTAACCGTGAA--ATCGCACGGAT-----------ATTGATCAGT-C---------A-TCC--CGCA-GCAA-CCGCA-------CAACAGCACG-GCGGCTGCACGG-TCACCGCACCATCTCCGCGCAGCCTCTGCACG-G
Alignments
lowQualScore : 11111111111 4444444444444444 444444444444444444444 11111111111 111111111 33333333333333333 2222222 777777777777777777777777
lowQualScore : 2 33 2 33 1 3 3 44 0 3 44 44 0 3 77777 0 3 44444444444 2 2 44 44 3 3 555 1111111111111111 77777777 0 44 44 44 7 0 2 000000000000000000000 44 0 1 3 55555555555 44 222222222 4 1 3 666 6 55 1 44444444444444444 3 3 6666 2 2 2 0 3 2222222 33 666666666666666666666666 0 2 33
lowQualScore : . .. . .. . . . .. . . .. .. . . ..... . . ........... . . .. .. . . ... ................ ........ . .. .. .. . . . ..................... .. . . . ........... .. ......... . . . ... . .. . ................. . . .... . . . . . ....... .. ........................ . . ..
lowQualScore : 9 99 9 99 6 7 6 22 5 1 22 22 6 1 77777 8 3 66666666666 7 7 22 22 3 3 888 3333333333333333 88888888 3 22 22 22 5 5 1 777777777777777777777 22 5 2 1 66666666666 22 000000000 4 0 4 444 8 00 2 44444444444444444 6 1 5555 9 9 9 2 1 2222222 99 777777777777777777777777 1 9 99
consensus : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTT--ATACAAATTTG-AAAA--A--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCGCA-CG-----GGCACCGCG-----------CGGAGGCCGCGCGCTGA-TCGTGC-AGAAAACGCAAGAT--TTTAGGTG--GA-CA-TT---GGGG-----C-----G----AAAAC---CG--CACGGAGA--TT--GTAGGCT--CTTGGGACAAT-------CT-----------CCG--CGCGG-CC---T-----CTGCA--CG-GAA--ACCGCACGGNTTC---CGTACGATT--TCCGTGC-------GGA-GGC--TGCG-GAGA-CTGCAC----GGCAACTGCACT-GAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC-GTA--GCCAC--------C--------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTTATCGCACGGCGCCCGGGGCAAATGTGA
Reference ( family-5232 ) : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTT--ATACAAATTTG-AAAA--A--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCGCA-CG-----GGCACCGCG-----------CGGAGGCCGCGCGCTGA-TCGTGC-AGAAAACGCAAGAT--TTTAGGTG--GA-CA-TT---GGGG-----C-----G----AAAAC---CG--CACGGAGG--TT--GTAGGCT--CTTCGGACNAT-------CT-----------CCG--CGCGG-CC---T-----CTGCA--CG-GAA--ACCGCACGGNTTC---CGTACGATT--TCCGTGC-------GGA-GGC--TGCG-GAGA-CTGCAC----GGCAACTGCACT-GAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC-GTA--GCCAC--------C--------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTTATCGCACGGCGCCCGGGGCAAATGTGA
gi|1 : CCGAATTCACATTT-GACCTGCAATGGGTCTACGGAGCCCGTATCCTGC--CCATATTCCACTTTC-CGTGCG--GCATCTGTGCGGAGGCAGGAAGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTTGCGAGAAGTT--ATACAAATTTG-AAAA--A--ATCGTAAGCCCGTATTCCGTAGACAAGTCATAGGGGGTATTGGGCAATCCCCGCA-CG-----GGCACTACG-----------CGGAGGCCGCTTGG-GACTCGGAC-A-----CTCAAAATCATCTCCGCG--CAGCC-TC---TGCA-----C-----G----GAAGC---CA--CACGG--G--CTCAGTACGATTNNNNNNNNNNAT-------CT-----------CCG--CGCAG-CC---T-----CTGCA--CG-GAA--GCCACACGGGCTC---AGTACGATT--TCCGTGC-------GGA-GGC--TGCG-GAGA-CTGCAC----TGTAACTGCACT-GTAATTGCACGA-TTTCCGTACAATCTCCGCACAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATATGCCGT-----------------------------------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCGTTTATCGCACGGCTCCCGGGGCAAATGTGA
gi|10 : TTAGTTTAGCGAGAA-----------ATTTG-AAAA--A--ATCGTTAGCCCGTAGCCCGTAGAAGTGTCGTAGGTGG-ATTGCACAATCCCCGCA-CG-----GGCACCGCG-----------AAGAGGCCGCGCGCTGA-TCGTGC-AGA------AAGAT--ATTAAGCG--GA-TA-TTAGGGGGG-----A-----G----GGGAT---CG--TACGGAGA--TT--ATAGGCT--CTTTGGACAAT---------------------CG--CACGGTCC---T-----C-GCA--C---AACTATCGCAAGGTTGC---CACTCGCTG--CCTGTGC---------A-GTC--AGCGTGAAA-TCGCAC----AGATACTGAGCA-GTCATCCCGTGGCTTTCCTTACAATCTCCGTGCAGCTTCTGCAAG-GCTTTGCCCCTGCCTTGTCC-CGAGAACCCGTACCAGAAATTGCACGATGCTCGTACATAATGTAAATACATACGCCGTAG---CCTGTA--GCCAC--------C--------T------ACAA-----TGC--CTCAAAAATCGTAGATCCATTTATCGGACGGtc
gi|11 : CCTGATTCACATTT-GGCCTGCGATGGGTTTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCA--GCATCCATGCGGAGACGGGAGGCGGCCGTGAGATTTTCGTATTGATTCACGGGCACCGCGGCCTCTACGACTTTGTTTAGCGAGAAGTT--ATACAAATTTG-AAAA--A--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGTAATCCCCGCA-CG-----GGCATCGCG-----------CGGAGGCCGCGCGCTGA-TCGTGC-AGAAAACGCAAGAT--TTTAGGTG--GA-CA-TT---GGGG-----G-----GGAAAAAAAT---TG--GACGGAGGAATT--GTAGGCT--CTTGGGACAAT-------CT------------CA--CA-GG-CC---T-----C-GCA--CA-GCT--ATCGCAAGGTTt
gi|12 : tgatgAC---AG--CACGGCGG--CT--GCACGGT--CACCGCACCAT-------CT-----------CCG--CGCAG-CC---T-----CTGCA--CG-GAA--GCCGCATGGGCTT---CGTACGATT--TCAATGC-------GGA-GGC--TAAG-GAGA-CTGCAC----GGCAACTGCACT-GAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTAAG-GCTTTGCCCCGGCCTGCCCC-CGAGGGTCCGTACGAGAAATCGTACGATGCTCGTACACAATGTGAACACATACGCCGTAGC--CC-GTA--GTCACCTATGATGC--------C------TCAAAAA-TCGT--ACGGGAAATCGTAGACCCATTTATCACACGGCGCCCGGGGCAAATGTGAgctgctcactgccggagcagtaaccgtgaaatcgcactgatattgagcagt
gi|13 : CCGCACCATGGCCGTGCAGCCTCTGTACG-GCTTTGCCTCGACCTACCCCCCGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCTTAT---CCTGTA--GCCACCTACGATGC--------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTTATCGCGCGGCGCCCGGGGTAAATGTGAaccaggca
gi|14 : ctatcgcaaggttgccgctcgcagcccgtgcagtaaccgtgaaatggcacggatattgagcagtcatcccgcgcaaacccacagcggTGA-TTGTAT-CGGGACCGCGA-----TTTAGTTGTTGA-C---T---GCA------C-----G----GCAAC---TG--CACTGAAA--TT--GCACGAT--TTCCGTACAAT-------CT-----------TCG--CGCAG-CC---T-----CTGTA--AG-Gac
gi|14 : cactggccaatggaGA-CTGCAC----GGCAACTGCACT-GAAATTGCACGA-TTTCCGTACAATCTTCGCGCAGCCTCTGTAAG-GCTTTGTCCCGG-CTGCCTC-CGAGGGCC----------------CGATGCTCGTACACGATGTAAACACATACGCCG-AGGC-CC-GTA--GCCAC--------CTACGATGTT------TCAAAAA-TCGT--AAGGAAAATCGTAGACCCATTTAGCGCACGGGGCCCGGGTCAAATGTGActttgtcccggctgcctccgagggcccgatgctcgtacacgatgtaaacacatacgccgaggcccgtagccacctacgatgtttcaaaaatcgtaaggaaaatcgtagacccatttagcgcacggggcccgggtcaaatgtgaaccaggcat
gi|15 : cactggccaatggatgattgtatcgggaccgcgatttagttgttCCTAATTCACATTT-GGCCTGCGATTGGTCTACGGAGCCCGTATCATGT--CCGTATCCCGCTTTC-CGTGCG--GCCTCCGTG---------------------AGATTTTCGCACGGAAATACGGTAGCCGCGGCCTCTACGATTTTGTT-AGCGAAAAGTT--TTAAAAAACTG-AAAA--ATAATCGT-------TAGCCCATAC-CATGTCGTGGGTGGCATTGCACAATCCCCGCA-CG-----GGAACCTCG-----------CGGAAGCCGCACGCTGA-TCGTGC-AGAAAACGCaccaggcat
gi|16 : tgAGA-CTGCAC----TGCAACTGCAAT-ATAATTGCATGA-TTTCCATACAACCTCTGCGCAGCCTCTGTACG-GCTTTGCCACGGCCTG-CCC-CGAGTGCTTGTACAAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC--TAATACCACCTACGATGC--------C------TCTAAAA-TCGT--ACGGAAAATCGTAGACCCATTTATCACATGGCATCCGGGGCAAATGTGA
gi|17 : CCTAATTAACATTT-GGCCTGCGATGGGTCTATGGAGCCCGTATCC-------------CCCTTCC-CGTGCG--G------------------------CCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGAATTTGTTAAGCCAGAACTT--ATACAAATTTG-AAAA--A--ATCGTA-------AGCCCGTAGACATGTCGTAGGTGGCATTTCGCAATCCCCGCA-CG-----GGCA----------------------CCGCGCGCTGA-TCTTGC-AGAAAATGCaccaggca
gi|18 : tgATTTACATTTTGGCCTGCGATGGGTCTACGGAGCCCTTATCCTGCGGCC-----------TC-CGTGCG--GTCTCt
gi|18 : tgctttGCGGTCTCTACGATTTTGTTTAGCGATAAGTT--ATACAAATTTG-AAAA--A--AATGTTAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCAGTGCGCAATCCCCGCA-TG-----G--------------------GAAG--TGCGCGCTGA-TCGTGC-AGAAAACGCAAGCT--TTTAGGTG--tacgattttgtttagcgataagttatacaaatttgaaaaaaatgttagcccgtagcccgtagacatgtcgtaggtggcagtgcgcaatccccgcatgggaagtgcgcgctgatcgtgcagaaaacgcaagcttttaggtg
gi|19 : tgctttatttacattttggcctgcgatgggtctacggagcccttatcctgcggcctccgtTAATTCACAATG-GGCCTGCAATGAGGCTACGGAGCCCGTATCCTGC--CCGTATCCACCTTTCACCTACGATGCCT
gi|19 : --------C--------C------T-AAAAA-TAGT--ACGGACAATCGTAGACC-ATTTATCGCACGGTGCCCGCGGCAAATGTGAaaaaatagtacggacaatcgtagaccatttatcgcacggtgcccgcggcaaatgtgaaccaag
gi|2 : taattcacaatgggcctgcaatgaggctacggagcccgtatcctgcccgtatccacctttcacctacgatgCCTAATTCACATTT-TGCCTGCAATGGGTCTAGGGAGCCCGTATCCTGT--CCGTATCCCCCTTTT-TGTGTA--GCCTCCGTACGGAGGCAGGAGGCGGCCGTGAGATTTTCCTACTGATTCACGGGCGCTACGGCCTCTACGATTTTGTTTAGCGAGAAGTT--AAGC-AATTTT-AAAA--A--ATCGTCAGCCCGTAGCCCGTAGAC--GTCATAGaccaag
gi|2 : gtgTGA-TCATGC-AGATAACGCAAGAT--ATTAGATG--GG-CA-TT---GGGG-----A-----A----AAAAT---CT--TACGGAGA--TT--GTAGGCT--CTTGGGACAAT-------C--------------G--CACGG-CC---C-----TTGCA--CA-GCC--ATCGCATTTATTTTTTCGT--GATT--TCCGTGC-------GGA-TGC--TGCG-GAGA-CTGCAC----GGCAACTGCACT-GAAATTGCATGA-TTTCCTTAAAATCTCCGCGCAGCCTCTGTACG-GCTTTGCACCGGCCTGTCCC-CGAGGGCCCGTAAGAGAAATCGCACGATGCTCGTACACAATGTGCTCACATACGCCGTAGC--CC-GTA--GCCAC--------CTACGATG-C------CTAAAAA-TCGT--ATGGAAAATCGTAGACCCATTTATCTCACGGCGCCCGGGGCAAATGTtgatcatgcagataacgcaagatattagatgggcattggggaaaaaatcttacggagattgtaggctcttgggacaatcgcacggcccttgcacagccatcgcatttattttttcgtgatttccgtgcggatgctgcggagactgcacggcaactgcactgaaattgcatgatttccttaaaatctccgcgcagcctctgtacggctttgcaccggcctgtccccgagggcccgtaagagaaatcgcacgatgctcgtacacaatgtgctcacatacgccgtagcccgtagccacctacgatgcctaaaaatcgtatggaaaatcgtagacccatttatctcacggcgcccggggcaaatgttaacct
gi|20 : gtgcctaattcacattttgcctgcaatgggtctagggagcccgtatcctgtccgtatccccctttttgtgtagcctccgtacggaggcaggaggcggccgtgagattttcctactgattcacgggcgctacggcctctacgattttgtttagcgagaagttaagcaattttaaaaaatcgtcagcccgtagcccgtagacgtcatagAAATCACACG-TGCTCGTACACAATGTGAACACATACGCCATAG---CCAGTA--GCCAC--------C--------TATGATGCCGAAAT-TTTTTTACGGAAAATCGTAGACCCATTTATTGCATGGCGCCCGGGGCAAATGTGAtaacct
gi|21 : TAATTCACATTT-GGCCTTCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATTCCCCTTTC-CGTGCG--GCCacgaggca
gi|3 : tCCTAATTCACATTT-GGCCTACACTGGGTCTACGG-----GTAACCTGC--CCGTATCCCACTTTC-CGTGCG--GCCTCCGTGTGGAGGCAGGAGGCGGCCGTGAGATTTTTGAACGGATTCACGCGCGCCGCGGCCTCTACGATTTTGT-----------TT--ATACAAATTTG-AAAA--A--ATCGTAAGTTCGTGGCCCGTAAACATGTCGTTGATGGCATTGAGCAATCCCCATGTCGTTGATGGCAAT----------------GAGACCGGGCGCTGA-TCGTGCAAAAAAACGCAAGAT--TTTAGGTG--GC-CA-TT---GGGG-----C-----A----AAAACAATCG--TACGGAGA--TT--GCAGGCT--CTTGTGACAAT---------------------CG--AACGG-CTA--TCGCAACTGTA--CT-GAA--AGTGCACAATTCC---CGTACAATC--TCTGCGCAACCTCTGTACGGCATTGCT-CAGGCCTGCCCCGGGGGC--CCGTACGAGAAATCGCACGA-TGCTCGTACA
gi|3 : tgGCAACTGTACT-GAAAGTGCACAA-TTCCCGTACAATCTCTGCGCAACCTCTGTACG-GCATTGCTCAGGCCTGCCCC--GGGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC---A--CCTACGATG----C--------C------TAAAAAA--AGT--ACGAAAAATCGTATATCCATTTATCGCACGGCGCCCATGGCAAATGTGAcaatgtgaacacatacgccgtagccacctacgatgcctaaaaaaagtacgaaaaatcgtatatccatttatcgcacggcgcccatggcaaatgtgaatcaggca
gi|4 : tgcctaattcacatttggcctacactgggtctacgggtaacctgcccgtatcccactttccgtgcggcctccgtgtggaggcaggaggcggccgtgagatttttgaacggattcacgcgcgccgcggcctctacgattttgtttatacaaatttgaaaaaatcgtaagttcgtggcccgtaaacatgtcgttgatggcattgagcaatccccatgtcgttgatggcaatgagaccgggcgctgatcgtgcaaaaaaacgcaagattttaggtggccattggggcaaaaacaatcgtacggagattgcaggctcttgtgacaatcgaacggctatcCCTAATTCACATTT-GGCCTGCGATGGGTTTACGT-GCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCTTGTGGAGGCAGGAGGCGGCCGTGAGCTTTTCGTACGGATTCATGGGCACCTCGGCCTCTACGATTTTGTTAAGCGAGAAGTTTGA-ACAAATTTG-AAAA--A--ATCGTAAGCCTGTAGCCCGTAGTCATGTCGTAGGTGGCAATGTGCAGCCCCCGCA-CA-----GGCACTGCG-----------CGGAGGTCACGCGCTGA-TCGTCA-AGAAACTGCAAGAT--TTAAGGTG--AA-CA-TT---GGGT-----A-----A----AAAAC---GG--CACGGCGG--CT--GCACGGT--CATCGCACCAG-------CT-----------CCG--CACAG-CC---T-----CTGCA--CG-GAA--GCCGCACGGTTTC---CGT--------------------------------GCG-GAGA-ATGCAC----GGCAACTGCATT-GAAATTGC----------GTACAATTTTCGCGTAGCCTCTGTACG-GCTTTGCCCCGGCCTGTCCC-CGAAGGCCCGTACGAGAAATTGCACGCTGCTTGCACACAATGTGAACACCTACGCCGTA------------GCCatcaggca
gi|5 : ataCCTAATTCACATTT-GGCCTGCGATGGGTCTACAGAGCCC-------------GTATCCCCCTTTC-CGTGCG--GCCTCCATGCAGAGGCAGGAGGTGACCGTGAGATTT--GTACGGATTCACGGGCA---------CTACGATTTTGTTAAGTG-GAAGcgt
gi|5 : ttatgCA-CG-----GGCACTACGATTTTGTTAAGTGGAAGCCGCACGCTGA-TCTTCC-AGAAAATGCAAGAT--TTTAGGTG--AA-CA-TT---GGGG-----CTCAA-A----AAAAC---GG--CACGGCGG--CT--ACACGGT--CACCGCACCAT-------CT-----------CCA--TGCAG-CC---T-----CTGCA--CT-GTA--GCCACATGGGCTC---CATATGATT--TCTGTGT-------GGA-GGC--TGCG-GAGA-CTGCAT----GTCTACTGCACT-GAAATTGCACAA-TTTCTGTACAATCTCCG-ACAGTCTCTGTACA-GCTTTGCCTCGGCCTTCACC-CGAGGG-CCGTACAAGAATTGGCATGATGCTCATACACAATGTGAACACAT--GTTGTAGCCACC-GTA--ACGATG-------C--------C------TCAAAAT-TCAT--ATGGAAAATCAAACATCCCTTTATCACACAGCGCCCAGGGCAAATGTGAccgcacgctgatcttccagaaaatgcaagattttaggtgaacattggggctcaaaaaaacggcacggcggctacacggtcaccgcaccatctccatgcagcctctgcactgtagccacatgggctccatatgatttctgtgtggaggctgcggagactgcatgtctactgcactgaaattgcacaatttctgtacaatctccgacagtctctgtacagctttgcctcggccttcacccgagggccgtacaagaattggcatgatgctcatacacaatgtgaacacatgttgtagccaccgtaacgatgcctcaaaattcatatggaaaatcaaacatccctttatcacacagcgcccagggcaaatgtgaaccaggta
gi|6 : ttatgcctaattcacatttggcctgcgatgggtctacagagcccgtatccccctttccgtgcggcctccatgcagaggcaggaggtgaccgtgagatttgtacggattCTTATTCACATTT-GGCCTGCGATTGGTCTA---AGCCCGTATCCTGT--CGGTATCCCCCTTTC-AGTGTG--G-----------AGGCAGGAGGCTTTCGTGAGTTTTTTGTACAG--------GCTCTGCGGCATCCATGATTTTGTTTAGGGAGAAG------------------AA--A--ATTGTAAACCCATA-----TA--CATGTCTTAGGTGGCATTGCGCAATCTCCGCT-CG-----G-TACCACG-----------CTGAGTCCGTGCGCTGA-TCATGC-AGAAAACACAAGAT--TTAAGCTG--GA-CATTT---GGGA-----CAAAAAA----AAAAT---TG--TACAGAGA--TT--GTAGGCT--CTTGGGACAAT---------------------------------------------CA--C---AA---------GGTTGC---CGTACGATT--TCCGTGC-------G---------------GA-TTGCAT----G---ATT----T-----TCGTACAA-TCTCCGCACA-----------GCCTCTGTATG-ACTATGCCTTGGCCTGCCCC-CGTGGGCCCGTACAAGAAACCGCATAATGCCCGCACACAATGTGAACATATATGTTGTAG---CC---A--ACTATGATG----C--------T------TAAAAAA-TCGT--ACGGAAAATCATAGACCCATTTATCGCATGGCGCCCGGGGCaccaggta
gi|7 : CCTCCATGTGGAGGCAGGAGGTGGCCGTGAGATTTTCGTACAGATTCAAGGGCACCAAGG--------ATATTGTTTAGCGAGATTTT--ATACAAATCTGTAAAA--A--ATCGTAAGCCCGTAG-------ACATGTCGTAGGTGGCATT------------CA-TG-----GGCAACGTG-----------CGGAGGCTGCGTGCTTA-TCATGC-AGAATACGCAAGAT--TTTAGGTA--GA-CA-TT---GGGG-----------G----AAAAA---AAAATACGGAGA--TT--GTAGGCT--CTT------------------------------G--CACAG-CT------------------------ACCGCAAGGTTGC---CACTCGCTG--CCC-----------------C--TGCG-AAGA-CTGCAC----GGCAACTGCACT-GAAATTGCACAA-TTTCTGTACAATCTCCACGCAGCC---ATAAG-GCTTTGCCCCAGCCTGCCCA-CAAGGGCCAGTAAGAGAAATCGCATGATGCTCGTACATTATGTGAACACATACGCCGTAGT--CT-GTA--GCCACCTATGATGC--------C------TCAAAAATTCGT--ACGGAAAATAGTATA-CCATTTATCACACAGCGCCTGGGACAATTGTGA
gi|8 : CCTAATTCACATTT-GGCCTACGATGGGTCTACGGTGTCTGTATCCTGC--CTGTATCCTACTTTC-TGTGGG--GTCTCCATGTGG-------AGGCAG----GAGGCT-------------------GCTGCGACCTCTACGATTTCGTTTAGCGAGTAGTT--ATACAAATTTG-AAAA--A--AATGTAAGCCCGTAGCCAGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCACA-CG-----GGCACCGCG-----------CAGAAGCTGCACGCTGA-TTGTGC-AGAAAACGCAAGAT--TTAAGGTG--GA-CA-TG---GGGGAAAAAC----------AAAAT---CA--AACAGAGA--TT--TTAGGCT--CTTGGGACAAA-------GT-------------G--CACGG-CC---T-----TCGCA--CA-GCT--ATTGCAAGGGCTC---CATATGATT--TCCATGC-------GAA-G------------A-CTGTAC----GGCAACTGCACT-GAAA---------TTTC---ACGATTTC-----------TGTACAAGCT----------------C-CGATGGCCCGTTTGAGAAATCGCACAATGCTCGTACTCAATGTGAACACATACACCGTAG---CC---A--CCTACGATG----C--------C------TAAAAGA-TTAT--accaggc
gi|9 : gCCTAATTCACATTT-GGCCTGCGATGGGTCTATGGAGCCCGTATCCTGC--CCGTTTTCGCCTTTC-CGTGCG--GCGTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGAG-----------TTTGTTAAGCGAGAAGTT--ATACAAATTTA-AAAAAAA--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCACA-CG-----GGCACCGCG-----------CGGAGGCAGCGCGCTGA-TCGTGC-AGAAAACGCAAGAT--TTTAGGTG--GA-CA-TT---GGGG-----CAAA--A----AAAAT---CG--TACGGAGA--TT--GTAGGCT--CTTGGGACAGTCGCACAGCTATCACATGTTGCCGCTCGCTG-CCGGTT-----CAGTAACCGTGAA--ATCGCACGGAT-----------ATTGATCAGT-C---------A-TCC--CGCA-GCAA-CCGCA-------CAACAGCACG-GCGGCTGCACGG-TCACCGCACCATCTCCGCGCAGCCTCTGCACG-G
Alignments
lowQualScore : 11111111111 4444444444444444 444444444444444444444 11111111111 111111111 1111 33333333333333333 2222222 777777777777777777777777
lowQualScore : 2 33 2 33 1 3 3 44 0 3 44 44 0 3 77777 0 3 44444444444 2 2 44 44 3 3 555 1111111111111111 77777777 0 44 3 44 0 0 222222222222222222222 44 0 1 3 55555555555 44 222222222 0000 1 3 6 55 1 44444444444444444 3 3 6666 2 2 2 0 3 2222222 33 666666666666666666666666 0 2 33
lowQualScore : . .. . .. . . . .. . . .. .. . . ..... . . ........... . . .. .. . . ... ................ ........ . .. . .. . . ..................... .. . . . ........... .. ......... .... . . . .. . ................. . . .... . . . . . ....... .. ........................ . . ..
lowQualScore : 9 99 9 99 6 7 6 22 5 1 22 22 6 1 77777 8 3 66666666666 7 7 22 22 3 3 888 3333333333333333 88888888 3 22 1 22 5 5 666666666666666666666 22 5 2 1 66666666666 22 000000000 2222 0 4 8 00 2 44444444444444444 6 1 5555 9 9 9 2 1 2222222 99 777777777777777777777777 1 9 99
consensus : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTT--ATACAAATTTG-AAAA--A--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCGCA-CG-----GGCACCGCG-----------CGGAGGCCGCGCGCTGA-TCGTGC-AGAAAACGCAAGAT--TTTAGGTG--GA-CA-TT---GGGG-----C-----G----AAAAC---CG--CACGGAG--ATT-GTAGGCT--CTTGGGACAAT-------CT-----------CCG--CGCGG-CC---T-----CTGCA--CG-GAA--ACCGCAC---GGTTTCCGTACGATT--TCCGTGC-------GGA-GGC--TGCG-GAGA-CTGCAC----GGCAACTGCACT-GAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC-GTA--GCCAC--------C--------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTTATCGCACGGCGCCCGGGGCAAATGTGA
Reference ( family-5232 ) : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTT--ATACAAATTTG-AAAA--A--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCGCA-CG-----GGCACCGCG-----------CGGAGGCCGCGCGCTGA-TCGTGC-AGAAAACGCAAGAT--TTTAGGTG--GA-CA-TT---GGGG-----C-----G----AAAAC---CG--CACGGAG--ATT-GTAGGCT--CTTGGGACAAT-------CT-----------CCG--CGCGG-CC---T-----CTGCA--CG-GAA--ACCGCAC---GGNTTCCGTACGATT--TCCGTGC-------GGA-GGC--TGCG-GAGA-CTGCAC----GGCAACTGCACT-GAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC-GTA--GCCAC--------C--------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTTATCGCACGGCGCCCGGGGCAAATGTGA
gi|1 : CCGAATTCACATTT-GACCTGCAATGGGTCTACGGAGCCCGTATCCTGC--CCATATTCCACTTTC-CGTGCG--GCATCTGTGCGGAGGCAGGAAGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTTGCGAGAAGTT--ATACAAATTTG-AAAA--A--ATCGTAAGCCCGTATTCCGTAGACAAGTCATAGGGGGTATTGGGCAATCCCCGCA-CG-----GGCACTACG-----------CGGAGGCCGCTTGG-GACTCGGAC-A-----CTCAAAATCATCTCCGCG--CAGCC-TC---TGCA-----C-----G----GAAGC---CA--CACGG-G--CTCAGTACGATTNNNNNNNNNNAT-------CT-----------CCG--CGCAG-CC---T-----CTGCA--CG-GAA--GCCACAC---GGGCTCAGTACGATT--TCCGTGC-------GGA-GGC--TGCG-GAGA-CTGCAC----TGTAACTGCACT-GTAATTGCACGA-TTTCCGTACAATCTCCGCACAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATATGCCGT-----------------------------------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCGTTTATCGCACGGCTCCCGGGGCAAATGTGA
gi|10 : TTAGTTTAGCGAGAA-----------ATTTG-AAAA--A--ATCGTTAGCCCGTAGCCCGTAGAAGTGTCGTAGGTGG-ATTGCACAATCCCCGCA-CG-----GGCACCGCG-----------AAGAGGCCGCGCGCTGA-TCGTGC-AGA------AAGAT--ATTAAGCG--GA-TA-TTAGGGGGG-----A-----G----GGGAT---CG--TACGGAG--ATT-ATAGGCT--CTTTGGACAAT---------------------CG--CACGGTCC---T-----C-GCA--C---AACTATCGCAA---GGTTGCCACTCGCTG--CCTGTGC---------A-GTC--AGCGTGAAA-TCGCAC----AGATACTGAGCA-GTCATCCCGTGGCTTTCCTTACAATCTCCGTGCAGCTTCTGCAAG-GCTTTGCCCCTGCCTTGTCC-CGAGAACCCGTACCAGAAATTGCACGATGCTCGTACATAATGTAAATACATACGCCGTAG---CCTGTA--GCCAC--------C--------T------ACAA-----TGC--CTCAAAAATCGTAGATCCATTTATCGGACGGtc
gi|11 : CCTGATTCACATTT-GGCCTGCGATGGGTTTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCA--GCATCCATGCGGAGACGGGAGGCGGCCGTGAGATTTTCGTATTGATTCACGGGCACCGCGGCCTCTACGACTTTGTTTAGCGAGAAGTT--ATACAAATTTG-AAAA--A--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGTAATCCCCGCA-CG-----GGCATCGCG-----------CGGAGGCCGCGCGCTGA-TCGTGC-AGAAAACGCAAGAT--TTTAGGTG--GA-CA-TT---GGGG-----G-----GGAAAAAAAT---TG--GACGGAGGAATT-GTAGGCT--CTTGGGACAAT-------CT------------CA--CA-GG-CC---T-----C-GCA--CA-GCT--ATCGCAA---GGTTt
gi|12 : tgatgAC---AG--CACGGCG--GCT-GCACGGT--CACCGCACCAT-------CT-----------CCG--CGCAG-CC---T-----CTGCA--CG-GAA--GCCGCAT---GGGCTTCGTACGATT--TCAATGC-------GGA-GGC--TAAG-GAGA-CTGCAC----GGCAACTGCACT-GAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTAAG-GCTTTGCCCCGGCCTGCCCC-CGAGGGTCCGTACGAGAAATCGTACGATGCTCGTACACAATGTGAACACATACGCCGTAGC--CC-GTA--GTCACCTATGATGC--------C------TCAAAAA-TCGT--ACGGGAAATCGTAGACCCATTTATCACACGGCGCCCGGGGCAAATGTGAgctgctcactgccggagcagtaaccgtgaaatcgcactgatattgagcagt
gi|13 : CCGCACCATGGCCGTGCAGCCTCTGTACG-GCTTTGCCTCGACCTACCCCCCGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCTTAT---CCTGTA--GCCACCTACGATGC--------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTTATCGCGCGGCGCCCGGGGTAAATGTGAaccaggca
gi|14 : ctatcgcaaggttgccgctcgcagcccgtgcagtaaccgtgaaatggcacggatattgagcagtcatcccgcgcaaacccacagcggTGA-TTGTAT-CGGGACCGCGA-----TTTAGTTGTTGA-C---T---GCA------C-----G----GCAAC---TG--CACTGAA--ATT-GCACGAT--TTCCGTACAAT-------CT-----------TCG--CGCAG-CC---T-----CTGTA--AG-Gac
gi|14 : cactggccaatggaGA-CTGCAC----GGCAACTGCACT-GAAATTGCACGA-TTTCCGTACAATCTTCGCGCAGCCTCTGTAAG-GCTTTGTCCCGG-CTGCCTC-CGAGGGCC----------------CGATGCTCGTACACGATGTAAACACATACGCCG-AGGC-CC-GTA--GCCAC--------CTACGATGTT------TCAAAAA-TCGT--AAGGAAAATCGTAGACCCATTTAGCGCACGGGGCCCGGGTCAAATGTGActttgtcccggctgcctccgagggcccgatgctcgtacacgatgtaaacacatacgccgaggcccgtagccacctacgatgtttcaaaaatcgtaaggaaaatcgtagacccatttagcgcacggggcccgggtcaaatgtgaaccaggcat
gi|15 : cactggccaatggatgattgtatcgggaccgcgatttagttgttCCTAATTCACATTT-GGCCTGCGATTGGTCTACGGAGCCCGTATCATGT--CCGTATCCCGCTTTC-CGTGCG--GCCTCCGTG---------------------AGATTTTCGCACGGAAATACGGTAGCCGCGGCCTCTACGATTTTGTT-AGCGAAAAGTT--TTAAAAAACTG-AAAA--ATAATCGT-------TAGCCCATAC-CATGTCGTGGGTGGCATTGCACAATCCCCGCA-CG-----GGAACCTCG-----------CGGAAGCCGCACGCTGA-TCGTGC-AGAAAACGCaccaggcat
gi|16 : tgAGA-CTGCAC----TGCAACTGCAAT-ATAATTGCATGA-TTTCCATACAACCTCTGCGCAGCCTCTGTACG-GCTTTGCCACGGCCTG-CCC-CGAGTGCTTGTACAAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC--TAATACCACCTACGATGC--------C------TCTAAAA-TCGT--ACGGAAAATCGTAGACCCATTTATCACATGGCATCCGGGGCAAATGTGA
gi|17 : CCTAATTAACATTT-GGCCTGCGATGGGTCTATGGAGCCCGTATCC-------------CCCTTCC-CGTGCG--G------------------------CCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGAATTTGTTAAGCCAGAACTT--ATACAAATTTG-AAAA--A--ATCGTA-------AGCCCGTAGACATGTCGTAGGTGGCATTTCGCAATCCCCGCA-CG-----GGCA----------------------CCGCGCGCTGA-TCTTGC-AGAAAATGCaccaggca
gi|18 : tgATTTACATTTTGGCCTGCGATGGGTCTACGGAGCCCTTATCCTGCGGCC-----------TC-CGTGCG--GTCTCt
gi|18 : tgctttGCGGTCTCTACGATTTTGTTTAGCGATAAGTT--ATACAAATTTG-AAAA--A--AATGTTAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCAGTGCGCAATCCCCGCA-TG-----G--------------------GAAG--TGCGCGCTGA-TCGTGC-AGAAAACGCAAGCT--TTTAGGTG--tacgattttgtttagcgataagttatacaaatttgaaaaaaatgttagcccgtagcccgtagacatgtcgtaggtggcagtgcgcaatccccgcatgggaagtgcgcgctgatcgtgcagaaaacgcaagcttttaggtg
gi|19 : tgctttatttacattttggcctgcgatgggtctacggagcccttatcctgcggcctccgtTAATTCACAATG-GGCCTGCAATGAGGCTACGGAGCCCGTATCCTGC--CCGTATCCACCTTTCACCTACGATGCCT
gi|19 : --------C--------C------T-AAAAA-TAGT--ACGGACAATCGTAGACC-ATTTATCGCACGGTGCCCGCGGCAAATGTGAaaaaatagtacggacaatcgtagaccatttatcgcacggtgcccgcggcaaatgtgaaccaag
gi|2 : taattcacaatgggcctgcaatgaggctacggagcccgtatcctgcccgtatccacctttcacctacgatgCCTAATTCACATTT-TGCCTGCAATGGGTCTAGGGAGCCCGTATCCTGT--CCGTATCCCCCTTTT-TGTGTA--GCCTCCGTACGGAGGCAGGAGGCGGCCGTGAGATTTTCCTACTGATTCACGGGCGCTACGGCCTCTACGATTTTGTTTAGCGAGAAGTT--AAGC-AATTTT-AAAA--A--ATCGTCAGCCCGTAGCCCGTAGAC--GTCATAGaccaag
gi|2 : gtgTGA-TCATGC-AGATAACGCAAGAT--ATTAGATG--GG-CA-TT---GGGG-----A-----A----AAAAT---CT--TACGGAG--ATT-GTAGGCT--CTTGGGACAAT---------------------CG--CACGG-CC---C-----TTGCA--CA-GCC--ATCGCATTTATTTTTTCGT--GATT--TCCGTGC-------GGA-TGC--TGCG-GAGA-CTGCAC----GGCAACTGCACT-GAAATTGCATGA-TTTCCTTAAAATCTCCGCGCAGCCTCTGTACG-GCTTTGCACCGGCCTGTCCC-CGAGGGCCCGTAAGAGAAATCGCACGATGCTCGTACACAATGTGCTCACATACGCCGTAGC--CC-GTA--GCCAC--------CTACGATG-C------CTAAAAA-TCGT--ATGGAAAATCGTAGACCCATTTATCTCACGGCGCCCGGGGCAAATGTtgatcatgcagataacgcaagatattagatgggcattggggaaaaaatcttacggagattgtaggctcttgggacaatcgcacggcccttgcacagccatcgcatttattttttcgtgatttccgtgcggatgctgcggagactgcacggcaactgcactgaaattgcatgatttccttaaaatctccgcgcagcctctgtacggctttgcaccggcctgtccccgagggcccgtaagagaaatcgcacgatgctcgtacacaatgtgctcacatacgccgtagcccgtagccacctacgatgcctaaaaatcgtatggaaaatcgtagacccatttatctcacggcgcccggggcaaatgttaacct
gi|20 : gtgcctaattcacattttgcctgcaatgggtctagggagcccgtatcctgtccgtatccccctttttgtgtagcctccgtacggaggcaggaggcggccgtgagattttcctactgattcacgggcgctacggcctctacgattttgtttagcgagaagttaagcaattttaaaaaatcgtcagcccgtagcccgtagacgtcatagAAATCACACG-TGCTCGTACACAATGTGAACACATACGCCATAG---CCAGTA--GCCAC--------C--------TATGATGCCGAAAT-TTTTTTACGGAAAATCGTAGACCCATTTATTGCATGGCGCCCGGGGCAAATGTGAtaacct
gi|21 : TAATTCACATTT-GGCCTTCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATTCCCCTTTC-CGTGCG--GCCacgaggca
gi|3 : tCCTAATTCACATTT-GGCCTACACTGGGTCTACGG-----GTAACCTGC--CCGTATCCCACTTTC-CGTGCG--GCCTCCGTGTGGAGGCAGGAGGCGGCCGTGAGATTTTTGAACGGATTCACGCGCGCCGCGGCCTCTACGATTTTGT-----------TT--ATACAAATTTG-AAAA--A--ATCGTAAGTTCGTGGCCCGTAAACATGTCGTTGATGGCATTGAGCAATCCCCATGTCGTTGATGGCAAT----------------GAGACCGGGCGCTGA-TCGTGCAAAAAAACGCAAGAT--TTTAGGTG--GC-CA-TT---GGGG-----C-----A----AAAACAATCG--TACGGAG--ATT-GCAGGCT--CTTGTGACAAT---------------------CG--AACGG-CTA--TCGCAACTGTA--CT-GAA--AGTGCAC---AATTCCCGTACAATC--TCTGCGCAACCTCTGTACGGCATTGCT-CAGGCCTGCCCCGGGGGC--CCGTACGAGAAATCGCACGA-TGCTCGTACA
gi|3 : tgGCAACTGTACT-GAAAGTGCACAA-TTCCCGTACAATCTCTGCGCAACCTCTGTACG-GCATTGCTCAGGCCTGCCCC--GGGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC---A--CCTACGATG----C--------C------TAAAAAA--AGT--ACGAAAAATCGTATATCCATTTATCGCACGGCGCCCATGGCAAATGTGAcaatgtgaacacatacgccgtagccacctacgatgcctaaaaaaagtacgaaaaatcgtatatccatttatcgcacggcgcccatggcaaatgtgaatcaggca
gi|4 : tgcctaattcacatttggcctacactgggtctacgggtaacctgcccgtatcccactttccgtgcggcctccgtgtggaggcaggaggcggccgtgagatttttgaacggattcacgcgcgccgcggcctctacgattttgtttatacaaatttgaaaaaatcgtaagttcgtggcccgtaaacatgtcgttgatggcattgagcaatccccatgtcgttgatggcaatgagaccgggcgctgatcgtgcaaaaaaacgcaagattttaggtggccattggggcaaaaacaatcgtacggagattgcaggctcttgtgacaatcgaacggctatcCCTAATTCACATTT-GGCCTGCGATGGGTTTACGT-GCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCTTGTGGAGGCAGGAGGCGGCCGTGAGCTTTTCGTACGGATTCATGGGCACCTCGGCCTCTACGATTTTGTTAAGCGAGAAGTTTGA-ACAAATTTG-AAAA--A--ATCGTAAGCCTGTAGCCCGTAGTCATGTCGTAGGTGGCAATGTGCAGCCCCCGCA-CA-----GGCACTGCG-----------CGGAGGTCACGCGCTGA-TCGTCA-AGAAACTGCAAGAT--TTAAGGTG--AA-CA-TT---GGGT-----A-----A----AAAAC---GG--CACGGCG--GCT-GCACGGT--CATCGCACCAG-------CT-----------CCG--CACAG-CC---T-----CTGCA--CG-GAA--GCCGCAC---GGTTTCCGT--------------------------------GCG-GAGA-ATGCAC----GGCAACTGCATT-GAAATTGC----------GTACAATTTTCGCGTAGCCTCTGTACG-GCTTTGCCCCGGCCTGTCCC-CGAAGGCCCGTACGAGAAATTGCACGCTGCTTGCACACAATGTGAACACCTACGCCGTA------------GCCatcaggca
gi|5 : ataCCTAATTCACATTT-GGCCTGCGATGGGTCTACAGAGCCC-------------GTATCCCCCTTTC-CGTGCG--GCCTCCATGCAGAGGCAGGAGGTGACCGTGAGATTT--GTACGGATTCACGGGCA---------CTACGATTTTGTTAAGTG-GAAGcgt
gi|5 : ttatgCA-CG-----GGCACTACGATTTTGTTAAGTGGAAGCCGCACGCTGA-TCTTCC-AGAAAATGCAAGAT--TTTAGGTG--AA-CA-TT---GGGG-----CTCAA-A----AAAAC---GG--CACGGCG--GCT-ACACGGT--CACCGCACCAT-------CT-----------CCA--TGCAG-CC---T-----CTGCA--CT-GTA--GCCACAT---GGGCTCCATATGATT--TCTGTGT-------GGA-GGC--TGCG-GAGA-CTGCAT----GTCTACTGCACT-GAAATTGCACAA-TTTCTGTACAATCTCCG-ACAGTCTCTGTACA-GCTTTGCCTCGGCCTTCACC-CGAGGG-CCGTACAAGAATTGGCATGATGCTCATACACAATGTGAACACAT--GTTGTAGCCACC-GTA--ACGATG-------C--------C------TCAAAAT-TCAT--ATGGAAAATCAAACATCCCTTTATCACACAGCGCCCAGGGCAAATGTGAccgcacgctgatcttccagaaaatgcaagattttaggtgaacattggggctcaaaaaaacggcacggcggctacacggtcaccgcaccatctccatgcagcctctgcactgtagccacatgggctccatatgatttctgtgtggaggctgcggagactgcatgtctactgcactgaaattgcacaatttctgtacaatctccgacagtctctgtacagctttgcctcggccttcacccgagggccgtacaagaattggcatgatgctcatacacaatgtgaacacatgttgtagccaccgtaacgatgcctcaaaattcatatggaaaatcaaacatccctttatcacacagcgcccagggcaaatgtgaaccaggta
gi|6 : ttatgcctaattcacatttggcctgcgatgggtctacagagcccgtatccccctttccgtgcggcctccatgcagaggcaggaggtgaccgtgagatttgtacggattCTTATTCACATTT-GGCCTGCGATTGGTCTA---AGCCCGTATCCTGT--CGGTATCCCCCTTTC-AGTGTG--G-----------AGGCAGGAGGCTTTCGTGAGTTTTTTGTACAG--------GCTCTGCGGCATCCATGATTTTGTTTAGGGAGAAG------------------AA--A--ATTGTAAACCCATA-----TA--CATGTCTTAGGTGGCATTGCGCAATCTCCGCT-CG-----G-TACCACG-----------CTGAGTCCGTGCGCTGA-TCATGC-AGAAAACACAAGAT--TTAAGCTG--GA-CATTT---GGGA-----CAAAAAA----AAAAT---TG--TACAGAG--ATT-GTAGGCT--CTTGGGACAAT---------------------------------------------CA--C---AA------------GGTTGCCGTACGATT--TCCGTGC-------G---------------GA-TTGCAT----G---ATT----T-----TCGTACAA-TCTCCGCACA-----------GCCTCTGTATG-ACTATGCCTTGGCCTGCCCC-CGTGGGCCCGTACAAGAAACCGCATAATGCCCGCACACAATGTGAACATATATGTTGTAG---CC---A--ACTATGATG----C--------T------TAAAAAA-TCGT--ACGGAAAATCATAGACCCATTTATCGCATGGCGCCCGGGGCaccaggta
gi|7 : CCTCCATGTGGAGGCAGGAGGTGGCCGTGAGATTTTCGTACAGATTCAAGGGCACCAAGG--------ATATTGTTTAGCGAGATTTT--ATACAAATCTGTAAAA--A--ATCGTAAGCCCGTAG-------ACATGTCGTAGGTGGCATT------------CA-TG-----GGCAACGTG-----------CGGAGGCTGCGTGCTTA-TCATGC-AGAATACGCAAGAT--TTTAGGTA--GA-CA-TT---GGGG-----------G----AAAAA---AAAATACGGAG--ATT-GTAGGCT--CTTG--------------------------------CACAG-CT------------------------ACCGCAA---GGTTGCCACTCGCTG--CCC-----------------C--TGCG-AAGA-CTGCAC----GGCAACTGCACT-GAAATTGCACAA-TTTCTGTACAATCTCCACGCAGCC---ATAAG-GCTTTGCCCCAGCCTGCCCA-CAAGGGCCAGTAAGAGAAATCGCATGATGCTCGTACATTATGTGAACACATACGCCGTAGT--CT-GTA--GCCACCTATGATGC--------C------TCAAAAATTCGT--ACGGAAAATAGTATA-CCATTTATCACACAGCGCCTGGGACAATTGTGA
gi|8 : CCTAATTCACATTT-GGCCTACGATGGGTCTACGGTGTCTGTATCCTGC--CTGTATCCTACTTTC-TGTGGG--GTCTCCATGTGG-------AGGCAG----GAGGCT-------------------GCTGCGACCTCTACGATTTCGTTTAGCGAGTAGTT--ATACAAATTTG-AAAA--A--AATGTAAGCCCGTAGCCAGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCACA-CG-----GGCACCGCG-----------CAGAAGCTGCACGCTGA-TTGTGC-AGAAAACGCAAGAT--TTAAGGTG--GA-CA-TG---GGGGAAAAAC----------AAAAT---CA--AACAGAG--ATT-TTAGGCT--CTTGGGACAAA-------GT-------------G--CACGG-CC---T-----TCGCA--CA-GCT--ATTGCAA---GGGCTCCATATGATT--TCCATGC-------GAA-G------------A-CTGTAC----GGCAACTGCACT-GAAA---------TTTC---ACGATTTC-----------TGTACAAGCT----------------C-CGATGGCCCGTTTGAGAAATCGCACAATGCTCGTACTCAATGTGAACACATACACCGTAG---CC---A--CCTACGATG----C--------C------TAAAAGA-TTAT--accaggc
gi|9 : gCCTAATTCACATTT-GGCCTGCGATGGGTCTATGGAGCCCGTATCCTGC--CCGTTTTCGCCTTTC-CGTGCG--GCGTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGAG-----------TTTGTTAAGCGAGAAGTT--ATACAAATTTA-AAAAAAA--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCACA-CG-----GGCACCGCG-----------CGGAGGCAGCGCGCTGA-TCGTGC-AGAAAACGCAAGAT--TTTAGGTG--GA-CA-TT---GGGG-----CAAA--A----AAAAT---CG--TACGGAG--ATT-GTAGGCT--CTTGGGACAGTCGCACAGCTATCACATGTTGCCGCTCGCTG-CCGGTT-----CAGTAACCGTGAA--ATCGCAC---GGAT--------ATTGATCAGT-C---------A-TCC--CGCA-GCAA-CCGCA-------CAACAGCACG-GCGGCTGCACGG-TCACCGCACCATCTCCGCGCAGCCTCTGCACG-G
blockSeqs : T GG A AT A C T TG T AA TA T TTGAT G ATTTTGTTAAG . A . TT . T AGG CAAAAAA AATCGT GA . . CGCACAGCTATCACATGTTGC CT G T ATCGCAACT AC GTGAAAT TTTA T G T GA T AACCTCTGTACGGCATT T C CGGG A C A C CCACCG AT CTATGATGCC T TT
blockSeqs : . . . . G C T . . . . . . G . . . . . . . . GGGAAA AAAAT . . . CTC . G . GGTTCA . AACTAT A T T A . A GGAGGCT . . . . . . . GCCCG . CTACGATGCC . .
blockSeqs : . . . . G T A . . . . . . T . . . . . . . . CTCAAA CGT . . . CTT . A . TCT . AGCTAT A G T A . C GGATGCT . . . . . . . CCTG . CTACGATGTT . .
blockSeqs : . . . . G T T . . . . . . G . . . . . . . . AAAAAC TGG . . . CTC . A . TCT . GGAAGC T T C A . T GGAGGCT . . . . . . . CCCG . CTACGATGCC . .
blockSeqs : . . . . T C T . . . . . . A . . . . . . . . CAAAA AGC . . . CTC . G . CTT . AGCCAT C T T A . T AGTCA . . . . . . . CCTG . CTATGATGCC . .
blockSeqs : . . . . A T A . . . . . . A . . . . . . . . AG TGC . . . CT . G . TCT . TGAAAG C T T T . C ATCCC . . . . . . . CCCG . CTACGATGC . .
blockSeqs : . . . . A T A . . . . . . G . . . . . . . . CG CTT . . . GT . A . TCT . GGAAGC T G G A . C GAAG . . . . . . . CCAG . CTATGATG . .
blockSeqs : . . . . A C T . . . . . . G . . . . . . . . AA GGC . . . . . A . TTC . TGTAGC A T G . . C CT . . . . . . . TCTG . GATGCC . .
blockSeqs : . . . . G . T . . . . . . G . . . . . . . . CA GGC . . . . . A . TC . AGCTAT A T T . . A G . . . . . . . CC . GATGCT . .
blockSeqs : . . . . . . T . . . . . . . . . . . . . . . AA TGT . . . . . G . TC . AA C G . . . . . . . . . . . . CC . GATGCC . .
blockSeqs : . . . . . . A . . . . . . . . . . . . . . . G CAA . . . . . T . . . AC . A . . . . . . CC . GCC . .
blockSeqs : . . . . . . . . . . . . . . . . . CGT . . . . . . . . . . . . . . . CC . CT . .
blockSeqs : . . . . . . . . . . . . CC . .
blockSeqs : . .
blockSeqCons : ** ** CT******************* CCCG*** CTACGATGCC**************
originalCons : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTT--ATACAAATTTG-AAAA--A--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCGCA-CG-----GGCACCGCG-----------CGGAGGCCGCGCGCTGA-TCGTGC-AGAAAACGCAAGAT--TTTAGGTG--GA-CA-TT---GGGG-----C-----G----AAAAC---CG--CACGGAG--ATT-GTAGGCT--CTTGGGACAAT-------CT-----------CCG--CGCGG-CC---T-----CTGCA--CG-GAA--ACCGCAC---GGTTTCCGTACGATT--TCCGTGC-------GGA-GGC--TGCG-GAGA-CTGCAC----GGCAACTGCACT-GAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAG---CC-GTA--GCCAC--------C--------C------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTTATCGCACGGCGCCCGGGGCAAATGTGA
finalCons : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTT--ATACAAATTTG-AAAA--A--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCGCA-CG-----GGCACCGCG-----------CGGAGGCCGCGCGCTGA-TCGTGC-AGAAAACGCAAGAT--TTTAGGTG--GA-CA-TT---GGGG-----C-----G----AAAAC---CG--CACGGAG--ATT-GTAGGCT--CTTGGGACAATCT-------------------CG--CGCGG-CC---T-----CTGCA--CG-GAA--ACCGCAC---GGTTTCCGTACGATT--TCCGTGC-------GGA-GGC--TGCG-GAGA-CTGCAC----GGCAACTGCACT-GAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTAGCCCG---TA--GCCACCTACGATGCC--------------TCAAAAA-TCGT--ACGGAAAATCGTAGACCCATTTATCGCACGGCGCCCGGGGCAAATGTGA
Alignments
lowQualScore : 11111111111 4444444444444444 2222222 2222222222222222222222222 11111111111 33333333333333333333333333333333 111111111
lowQualScore : 2 33 2 33 1 3 3 44 0 3 44 44 0 3 77777 0 3 44444444444 2 2 44 44 3 3 555 1111111111111111 77777777 0 44 3 44 0 0 4444444 1 0 3 0000000000000000000000000 4 00000000000 6 3 66666666666666666666666666666666 3 44 3 6666 1 2 2 2 3 1 000000000 33 9999999 4 777
lowQualScore : . .. . .. . . . .. . . .. .. . . ..... . . ........... . . .. .. . . ... ................ ........ . .. . .. . . ....... . . . ......................... . ........... . . ................................ . .. . .... . . . . . . ......... .. ....... . ...
lowQualScore : 9 99 9 99 6 7 6 22 5 1 22 22 6 1 77777 8 3 66666666666 7 7 22 22 3 3 888 3333333333333333 88888888 3 22 1 22 5 5 9999999 8 5 1 7777777777777777777777777 4 22222222222 0 4 00000000000000000000000000000000 3 22 1 5555 6 9 9 9 1 1 555555555 00 3333333 3 999
consensus : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTT--ATACAAATTTG-AAAA--A--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCGCA-CG-----GGCACCGCG-----------CGGAGGCCGCGCGCTGA-TCGTGC-AGAAAACGCAAGAT--TTTAGGTG--GA-CA-TT---GGGG-----C-----G----AAAAC---CG--CACGGAG--ATT-GTAGGCT--CTTGGGACAATC-T-C-GCGCGG-CC-T-----C------TGCACGGNA--GCCGCACGG---TTT-----CCGTACGATTTCCGTGC-------GGA-GGC--TG-----------C--G-GAG--A-CTGCAC----GGCAACTGCACT-GAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTA----GC--CC-GTAGCCACCT-------ACGATGCCTCAAAAA---TCGTACGGAAAATCGTAGACCCATTTATCGCACGGCGCCCGGGGCAAATGTGA
Reference ( family-5232 ) : CCTAATTCACATTT-GGCCTGCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTAGCGAGAAGTT--ATACAAATTTG-AAAA--A--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCGCA-CG-----GGCACCGCG-----------CGGAGGCCGCGCGCTGA-TCGTGC-AGAAAACGCAAGAT--TTTAGGTG--GA-CA-TT---GGGG-----C-----G----AAAAC---CG--CACGGAG--ATT-GTAGGCT--CTTGGGACAATC-T-C-GCGCGG-CC-T-----C------TGCACGGAA--ACCGCACGG---TTT-----CCGTACGATTTCCGTGC-------GGA-GGC--TG-----------C--G-GAG--A-CTGCAC----GGCAACTGCACT-GAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTA----GC--CC-GTAGCCACCT-------ACGATGCCTCAAAAA---TCGTACGGAAAATCGTAGACCCATTTATCGCACGGCGCCCGGGGCAAATGTGA
gi|1 : CCGAATTCACATTT-GACCTGCAATGGGTCTACGGAGCCCGTATCCTGC--CCATATTCCACTTTC-CGTGCG--GCATCTGTGCGGAGGCAGGAAGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGATTTTGTTTTGCGAGAAGTT--ATACAAATTTG-AAAA--A--ATCGTAAGCCCGTATTCCGTAGACAAGTCATAGGGGGTATTGGGCAATCCCCGCA-CG-----GGCACTACG-----------CGGAGGCCGCTTG-GGACTCGGAC------ACTCAAAATCATCTCCGCG--CAGCC-TC---TGCA-----C-----G----GAAGC---CA--CACGG-G--CTCAGTACGATTNNNNNNNNNNATC-TCC-GCGCAG-CC-T-----C------TGCACGGAA--GCCACACGG---GCT-----CAGTACGATTTCCGTGC-------GGA-GGC--TG-----------C--G-GAG--A-CTGCAC----TGTAACTGCACT-GTAATTGCACGA-TTTCCGTACAATCTCCGCACAGCCTCTGTACG-GCTTTGCCCCGGCCTGCCCC-CGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATATGCCGT------------------------------------CTCAAAAA---TCGTACGGAAAATCGTAGACCCGTTTATCGCACGGCTCCCGGGGCAAATGTGA
gi|10 : TTAGTTTAGCGAGAA-----------ATTTG-AAAA--A--ATCGTTAGCCCGTAGCCCGTAGAAGTGTCGTAGGTGG-ATTGCACAATCCCCGCA-CG-----GGCACCGCG-----------AAGAGGCCGCGCGCTGA-TCGTGC-AGA------AAGAT--ATTAAGCG--GA-TA-TTAGGGGGG-----A-----G----GGGAT---CG--TACGGAG--ATT-ATAGGCT--CTTTGGACAA---T-C-GCACGGTCC-T-----C-------GCAC--AACTATCGCAAGG---TTG-----CCACTCGCTGCCTGTGC---------A-GTC--AG-----------C--GTGAA--A-TCGCAC----AGATACTGAGCA-GTCATCCCGTGGCTTTCCTTACAATCTCCGTGCAGCTTCTGCAAG-GCTTTGCCCCTGCCTTGTCC-CGAGAACCCGTACCAGAAATTGCACGATGCTCGTACATAATGTAAATACATACGCCGTA----GC--CT-GTAGCCACCT-------ACAATGCCTCA---------------AAAATCGTAGATCCATTTATCGGACGGtc
gi|11 : CCTGATTCACATTT-GGCCTGCGATGGGTTTACGGAGCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCA--GCATCCATGCGGAGACGGGAGGCGGCCGTGAGATTTTCGTATTGATTCACGGGCACCGCGGCCTCTACGACTTTGTTTAGCGAGAAGTT--ATACAAATTTG-AAAA--A--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGTAATCCCCGCA-CG-----GGCATCGCG-----------CGGAGGCCGCGCGCTGA-TCGTGC-AGAAAACGCAAGAT--TTTAGGTG--GA-CA-TT---GGGG-----G-----GGAAAAAAAT---TG--GACGGAGGAATT-GTAGGCT--CTTGGGACAATC-T-C-ACA-GG-CC-T-----C-------GCACAGCT--ATCGCAAGG---TTt
gi|12 : tgatgAC---AG--CACGGCG--GCT-GCACGGT--CACCGCACCATC-T-CCGCGCAG-CC-T-----C------TGCACGGAA--GCCGCATGG---GCT-----TCGTACGATTTCAATGC-------GGA-GGC--TA-----------A--G-GAG--A-CTGCAC----GGCAACTGCACT-GAAATTGCACGA-TTTCCGTACAATCTCCGCGCAGCCTCTGTAAG-GCTTTGCCCCGGCCTGCCCC-CGAGGGTCCGTACGAGAAATCGTACGATGCTCGTACACAATGTGAACACATACGCCGTA----GC--CC-GTAGTCACCT-------ATGATGCCTCAAAAA---TCGTACGGGAAATCGTAGACCCATTTATCACACGGCGCCCGGGGCAAATGTGAgctgctcactgccggagcagtaaccgtgaaatcgcactgatattgagcagt
gi|13 : CCGCACCATGGCCGTGCAGCCTCTGTACG-GCTTTGCCTCGACCTACCCCCCGAGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCTTA----TC--CT-GTAGCCACCT-------ACGATGCCTCAAAAA---TCGTACGGAAAATCGTAGACCCATTTATCGCGCGGCGCCCGGGGTAAATGTGAaccaggca
gi|14 : ctatcgcaaggttgccgctcgcagcccgtgcagtaaccgtgaaatggcacggatattgagcagtcatcccgcgcaaacccacagcggTGA-TTGTAT-CGGGACCGCGA-----TTTAGTTGTTGA-C---T---GCA------C-----G----GCAAC---TG--CACTGAA--ATT-GCACGAT--TTCCGTACAATCTT-C-GCGCAG-CC-T-----C------TGTAAGGac
gi|14 : cactggccaatgga-GAC--TG-----------CACG-GCA--A-CTGC---------------ACT-GAAATTGCACGA-TTTCCGTACAATCTTCGCGCAGCCTCTGTAAG-GCTTTGTCCCGG-CTGCCTC-CGAGGGCC----------------CGATGCTCGTACACGATGTAAACACATACGCCGAG----GC--CC-GTAGCCACCT-------ACGATGTTTCAAAAA---TCGTAAGGAAAATCGTAGACCCATTTAGCGCACGGGGCCCGGGTCAAATGTGActttgtcccggctgcctccgagggcccgatgctcgtacacgatgtaaacacatacgccgaggcccgtagccacctacgatgtttcaaaaatcgtaaggaaaatcgtagacccatttagcgcacggggcccgggtcaaatgtgaaccaggcat
gi|15 : cactggccaatggatgattgtatcgggaccgcgatttagttgttCCTAATTCACATTT-GGCCTGCGATTGGTCTACGGAGCCCGTATCATGT--CCGTATCCCGCTTTC-CGTGCG--GCCTCCGTG---------------------AGATTTTCGCACGGAAATACGGTAGCCGCGGCCTCTACGATTTTGTT-AGCGAAAAGTT--TTAAAAAACTG-AAAA--ATAATCGT-------TAGCCCATAC-CATGTCGTGGGTGGCATTGCACAATCCCCGCA-CG-----GGAACCTCG-----------CGGAAGCCGCACGCTGA-TCGTGC-AGAAAACGCaccaggcat
gi|16 : tgAG--A-CTGCAC----TGCAACTGCAAT-ATAATTGCATGA-TTTCCATACAACCTCTGCGCAGCCTCTGTACG-GCTTTGCCACGGCCTGCCCC--GAGTGCTTGTACAAGAAATCGCACGATGCTCGTACACAATGTGAACACATACGCCGTA----GC--CTAATA-CCACCT-------ACGATGCCTCTAAAA---TCGTACGGAAAATCGTAGACCCATTTATCACATGGCATCCGGGGCAAATGTGA
gi|17 : CCTAATTAACATTT-GGCCTGCGATGGGTCTATGGAGCCCGTATCC-------------CCCTTCC-CGTGCG--G------------------------CCGTGAGATTTTCGTACGGATTCACGGGCGCCGCGGCCTCTACGAATTTGTTAAGCCAGAACTT--ATACAAATTTG-AAAA--A--ATCGTA-------AGCCCGTAGACATGTCGTAGGTGGCATTTCGCAATCCCCGCA-CG-----GGCA----------------------CCGCGCGCTGA-TCTTGC-AGAAAATGCaccaggca
gi|18 : tgATTTACATTTTGGCCTGCGATGGGTCTACGGAGCCCTTATCCTGCGGCC-----------TC-CGTGCG--GTCTCt
gi|18 : tgctttGCGGTCTCTACGATTTTGTTTAGCGATAAGTT--ATACAAATTTG-AAAA--A--AATGTTAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCAGTGCGCAATCCCCGCA-TG-----G--------------------GAAG--TGCGCGCTGA-TCGTGC-AGAAAACGCAAGCT--TTTAGGTG--tacgattttgtttagcgataagttatacaaatttgaaaaaaatgttagcccgtagcccgtagacatgtcgtaggtggcagtgcgcaatccccgcatgggaagtgcgcgctgatcgtgcagaaaacgcaagcttttaggtg
gi|19 : tgctttatttacattttggcctgcgatgggtctacggagcccttatcctgcggcctccgtTAATTCACAATG-GGCCTGCAATGAGGCTACGGAGCCCGTATCCTGC--CCGTATCCACCTTTCACCTACGATGCCT
gi|19 : CCGTATCCTGC--CC-GTATCCACCTTTCACCTACGATGCCT-AAAAA---TAGTACGGACAATCGTAGACC-ATTTATCGCACGGTGCCCGCGGCAAATGTGAaaaaatagtacggacaatcgtagaccatttatcgcacggtgcccgcggcaaatgtgaaccaag
gi|2 : taattcacaatgggcctgcaatgaggctacggagcCCTAATTCACATTT-TGCCTGCAATGGGTCTAGGGAGCCCGTATCCTGT--CCGTATCCCCCTTTT-TGTGTA--GCCTCCGTACGGAGGCAGGAGGCGGCCGTGAGATTTTCCTACTGATTCACGGGCGCTACGGCCTCTACGATTTTGTTTAGCGAGAAGTT--AAGC-AATTTT-AAAA--A--ATCGTCAGCCCGTAGCCCGTAGAC--GTCATAGaccaag
gi|2 : gtgTGA-TCATGC-AGATAACGCAAGAT--ATTAGATG--GG-CA-TT---GGGG-----A-----A----AAAAT---CT--TACGGAG--ATT-GTAGGCT--CTTGGGACAATC-----GCACGG-CC-C-----T------TGCACAGCC--ATCGCATTTATTTTT-----TCGT--GATTTCCGTGC-------GGA-TGC--TG-----------C--G-GAG--A-CTGCAC----GGCAACTGCACT-GAAATTGCATGA-TTTCCTTAAAATCTCCGCGCAGCCTCTGTACG-GCTTTGCACCGGCCTGTCCC-CGAGGGCCCGTAAGAGAAATCGCACGATGCTCGTACACAATGTGCTCACATACGCCGTA----GC--CC-GTAGCCACCT-------ACGATGCCT-AAAAA---TCGTATGGAAAATCGTAGACCCATTTATCTCACGGCGCCCGGGGCAAATGTtgatcatgcagataacgcaagatattagatgggcattggggaaaaaatcttacggagattgtaggctcttgggacaatcgcacggcccttgcacagccatcgcatttattttttcgtgatttccgtgcggatgctgcggagactgcacggcaactgcactgaaattgcatgatttccttaaaatctccgcgcagcctctgtacggctttgcaccggcctgtccccgagggcccgtaagagaaatcgcacgatgctcgtacacaatgtgctcacatacgccgtagcccgtagccacctacgatgcctaaaaatcgtatggaaaatcgtagacccatttatctcacggcgcccggggcaaatgttaacct
gi|20 : gtgcctaattcacattttgcctgcaatgggtctagggagcccgtatcctgtccgtatccccctttttgtgtagcctccgtacggaggcaggaggcggccgtgagattttcctactgattcacgggcgctacggcctctacgattttgtttagcgagaagttaagcaattttaaaaaatcgtcagcccgtagcccgtagacgtcatagAAATCACACG-TGCTCGTACACAATGTGAACACATACGCCATA----GC--CA-GTAGCCACCT-------ATGATGCC---GAAATTTTTTTACGGAAAATCGTAGACCCATTTATTGCATGGCGCCCGGGGCAAATGTGAtaacct
gi|21 : TAATTCACATTT-GGCCTTCGATGGGTCTACGGAGCCCGTATCCTGC--CCGTATTCCCCTTTC-CGTGCG--GCCacgaggca
gi|3 : tCCTAATTCACATTT-GGCCTACACTGGGTCTACGG-----GTAACCTGC--CCGTATCCCACTTTC-CGTGCG--GCCTCCGTGTGGAGGCAGGAGGCGGCCGTGAGATTTTTGAACGGATTCACGCGCGCCGCGGCCTCTACGATTTTGT-----------TT--ATACAAATTTG-AAAA--A--ATCGTAAGTTCGTGGCCCGTAAACATGTCGTTGATGGCATTGAGCAATCCCCATGTCGTTGATGGCAAT----------------GAGACCGGGCGCTGA-TCGTGCAAAAAAACGCAAGAT--TTTAGGTG--GC-CA-TT---GGGG-----C-----A----AAAACAATCG--TACGGAG--ATT-GCAGGCT--CTTGTGACAA---T-C-GAACGG-CTATCGCAAC------TGTACTGAA--AGTGCACAA---TTC-----CCGTACAATCTCTGCGCAACCTCTGTACGGCATTG-----------C--T-CAG--GCCTGCCCCGGGGGC--CCGTACGAGAAATCGCACGA-TGCTCGTACA
gi|3 : tgGCAACTGTACT-GAAAGTGCACAA-TTCCCGTACAATCTCTGCGCAACCTCTGTACG-GCATTGCTCAGGCCTGCCCC--GGGGGCCCGTACGAGAAATCGCACGATGCTCGTACACAATGTGAACACATACG-------------CC-GTAGCCACCT-------ACGATGCCTAAAAAA----AGTACGAAAAATCGTATATCCATTTATCGCACGGCGCCCATGGCAAATGTGAcaatgtgaacacatacgccgtagccacctacgatgcctaaaaaaagtacgaaaaatcgtatatccatttatcgcacggcgcccatggcaaatgtgaatcaggca
gi|4 : tgcctaattcacatttggcctacactgggtctacgggtaacctgcccgtatcccactttccgtgcggcctccgtgtggaggcaggaggcggccgtgagatttttgaacggattcacgcgcgccgcggcctctacgattttgtttatacaaatttgaaaaaatcgtaagttcgtggcccgtaaacatgtcgttgatggcattgagcaatccccatgtcgttgatggcaatgagaccgggcgctgatcgtgcaaaaaaacgcaagattttaggtggccattggggcaaaaacaatcgtacggagattgcaggctcttgtgacaatcgaacggctatcCCTAATTCACATTT-GGCCTGCGATGGGTTTACGT-GCCCGTATCCTGC--CCGTATCCCCCTTTC-CGTGCG--GCCTCCTTGTGGAGGCAGGAGGCGGCCGTGAGCTTTTCGTACGGATTCATGGGCACCTCGGCCTCTACGATTTTGTTAAGCGAGAAGTTTGA-ACAAATTTG-AAAA--A--ATCGTAAGCCTGTAGCCCGTAGTCATGTCGTAGGTGGCAATGTGCAGCCCCCGCA-CA-----GGCACTGCG-----------CGGAGGTCACGCGCTGA-TCGTCA-AGAAACTGCAAGAT--TTAAGGTG--AA-CA-TT---GGGT-----A-----A----AAAAC---GG--CACGGCG--GCT-GCACGGT--CATCGCACCAGC-T-CCGCACAG-CC-T-----C------TGCACGGAA--GCCGCACGG---TTT-----CCGT------------------------------G-----------C--G-GAG--A-ATGCAC----GGCAACTGCATT-GAAATTGC----------GTACAATTTTCGCGTAGCCTCTGTACG-GCTTTGCCCCGGCCTGTCCC-CGAAGGCCCGTACGAGAAATTGCACGCTGCTTGCACACAATGTGAACACCTACGCCGTA--------------GCCatcaggca
gi|5 : ataCCTAATTCACATTT-GGCCTGCGATGGGTCTACAGAGCCC-------------GTATCCCCCTTTC-CGTGCG--GCCTCCATGCAGAGGCAGGAGGTGACCGTGAGATTT--GTACGGATTCACGGGCA---------CTACGATTTTGTTAAGTG-GAAGcgt
gi|5 : ttatgCA-CG-----GGCACTACGATTTTGTTAAGTGGAAGCCGCACGCTGA-TCTTCC-AGAAAATGCAAGAT--TTTAGGTG--AA-CA-TT---GGGG-----CTCAA-A----AAAAC---GG--CACGGCG--GCT-ACACGGT--CACCGCACCATC-T-CCATGCAG-CC-T-----C------TGCACTGTA--GCCACATGG---GCT-----CCATATGATTTCTGTGT-------GGA-GGC--TG-----------C--G-GAG--A-CTGCAT----GTCTACTGCACT-GAAATTGCACAA-TTTCTGTACAATCTCCG-ACAGTCTCTGTACA-GCTTTGCCTCGGCCTTCACC-CGAGGG-CCGTACAAGAATTGGCATGATGCTCATACACAATGTGAACACAT--GTTGTA----GCCACC-GTA--------------ACGATGCCTCAAAAT---TCATATGGAAAATCAAACATCCCTTTATCACACAGCGCCCAGGGCAAATGTGAccgcacgctgatcttccagaaaatgcaagattttaggtgaacattggggctcaaaaaaacggcacggcggctacacggtcaccgcaccatctccatgcagcctctgcactgtagccacatgggctccatatgatttctgtgtggaggctgcggagactgcatgtctactgcactgaaattgcacaatttctgtacaatctccgacagtctctgtacagctttgcctcggccttcacccgagggccgtacaagaattggcatgatgctcatacacaatgtgaacacatgttgtagccaccgtaacgatgcctcaaaattcatatggaaaatcaaacatccctttatcacacagcgcccagggcaaatgtgaaccaggta
gi|6 : ttatgcctaattcacatttggcctgcgatgggtctacagagcccgtatccccctttccgtgcggcctccatgcagaggcaggaggtgaccgtgagatttgtacggattCTTATTCACATTT-GGCCTGCGATTGGTCTA---AGCCCGTATCCTGT--CGGTATCCCCCTTTC-AGTGTG--G-----------AGGCAGGAGGCTTTCGTGAGTTTTTTGTACAG--------GCTCTGCGGCATCCATGATTTTGTTTAGGGAGAAG------------------AA--A--ATTGTAAACCCATA-----TA--CATGTCTTAGGTGGCATTGCGCAATCTCCGCT-CG-----G-TACCACG-----------CTGAGTCCGTGCGCTGA-TCATGC-AGAAAACACAAGAT--TTAAGCTG--GA-CATTT---GGGA-----CAAAAAA----AAAAT---TG--TACAGAG--ATT-GTAGGCT--CTTGGGACAAT------------------------------------------CACAAGG---TTG-----CCGTACGATTTCCGTGC-------G----------------------------G--A-TTGCAT----G---ATT----T-----TCGTACAA-TCTCCGCA-----------CAGCCTCTGTATG-ACTATGCCTTGGCCTGCCCC-CGTGGGCCCGTACAAGAAACCGCATAATGCCCGCACACAATGTGAACATATATG-------------TT-GTAGCCAACT-------ATGATGCTTAAAAAA---TCGTACGGAAAATCATAGACCCATTTATCGCATGGCGCCCGGGGCaccaggta
gi|7 : CCTCCATGTGGAGGCAGGAGGTGGCCGTGAGATTTTCGTACAGATTCAAGGGCACCAAGG--------ATATTGTTTAGCGAGATTTT--ATACAAATCTGTAAAA--A--ATCGTAAGCCCGTAG-------ACATGTCGTAGGTGGCATT------------CA-TG-----GGCAACGTG-----------CGGAGGCTGCGTGCTTA-TCATGC-AGAATACGCAAGAT--TTTAGGTA--GA-CA-TT---GGGG-----------G----AAAAA---AAAATACGGAG--ATT-GTAGGCT--CTTG--------------CACAG-CT-------------------------ACCGCAAGG---TTG-----CCACTCGCTGCCC-----------------C--TG-----------C--G-AAG--A-CTGCAC----GGCAACTGCACT-GAAATTGCACAA-TTTCTGTACAATCTCCACGCAGCC---ATAAG-GCTTTGCCCCAGCCTGCCCA-CAAGGGCCAGTAAGAGAAATCGCATGATGCTCGTACATTATGTGAACACATACGCCGTA----GT--CT-GTAGCCACCT-------ATGATGCCTCAAAAAT--TCGTACGGAAAATAGTATA-CCATTTATCACACAGCGCCTGGGACAATTGTGA
gi|8 : CCTAATTCACATTT-GGCCTACGATGGGTCTACGGTGTCTGTATCCTGC--CTGTATCCTACTTTC-TGTGGG--GTCTCCATGTGG-------AGGCAG----GAGGCT-------------------GCTGCGACCTCTACGATTTCGTTTAGCGAGTAGTT--ATACAAATTTG-AAAA--A--AATGTAAGCCCGTAGCCAGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCACA-CG-----GGCACCGCG-----------CAGAAGCTGCACGCTGA-TTGTGC-AGAAAACGCAAGAT--TTAAGGTG--GA-CA-TG---GGGGAAAAAC----------AAAAT---CA--AACAGAG--ATT-TTAGGCT--CTTGGGACAAAG-T---GCACGG-CC-T-----T------CGCACAGCT--ATTGCAAGG---GCT-----CCATATGATTTCCATGC-------GAA-G---------------------------A-CTGTAC----GGCAACTGCACT-GAAA---------TTTC---ACGATTTC-----------TGTACAAGCT----------------C-CGATGGCCCGTTTGAGAAATCGCACAATGCTCGTACTCAATGTGAACACATACA-------------CC-GTAGCCACCT-------ACGATGCCTAAAAGA---TTATAaccaggc
gi|9 : gCCTAATTCACATTT-GGCCTGCGATGGGTCTATGGAGCCCGTATCCTGC--CCGTTTTCGCCTTTC-CGTGCG--GCGTCCGTGCGGAGGCAGGAGGCGGCCGTGAGATTTTCGTACGGATTCACGGGCGCCGAG-----------TTTGTTAAGCGAGAAGTT--ATACAAATTTA-AAAAAAA--ATCGTAAGCCCGTAGCCCGTAGACATGTCGTAGGTGGCATTGCGCAATCCCCACA-CG-----GGCACCGCG-----------CGGAGGCAGCGCGCTGA-TCGTGC-AGAAAACGCAAGAT--TTTAGGTG--GA-CA-TT---GGGG-----CAAA--A----AAAAT---CG--TACGGAG--ATT-GTAGGCT--CTTGGGACAG---T-C-GCACAG-CTAT-----CACATGTTGC-CGCTC--GCTGC-CGG---TTCAGTAACCGTGAAAT---CGCAC-------GGA-TAT--TGATCAGTCATCCC--G-CAGCAA-CCGCA-------CAACAGCACG-GCGGCTGCACGG-TCACCGCACCATCTCCGCGCAGCCTCTGCACG-G