lowQualScore : 444444 1111111111 1 3333 11 1111 1
lowQualScore : 6 333333 7777 999999 4444444444 8 6 6 8 3333 2 6 00 3 4 6 3 3 3 3 1 8888 2 4
lowQualScore : . ...... .... ...... .......... . . . . .... . . .. . . . . . . . . .... . .
lowQualScore : 0 666666 7777 666666 6666666666 8 2 0 9 2222 8 0 88 1 8 2 1 1 3 3 8 2222 5 5
consensus : TGTCAACACCTTCAGTTGCTTATCAAAACAATCGCACATGGTGCG----TGTGTGT----GTGT------AC----------CGCTGGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCG-TTCTATGAAAGAATAATATGANAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTGTATACGCATATTGGAAATTACCTAACGACGCGTGTAGTGTCTACGGTCTGATTAGCCAATAAAG-GAACACAGCGGGGAGGTACCGTTTATTCTTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGCGTGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCGGCCCGCCCCGCCATGCCGCTTTAGGGGAAACAC
Reference ( gi|4 ) : TGTCAATACCTTCAGTTGCTTATCAAAACAATCGCACATGGTG------TGTGTGT----GTGT------AC----------CGCTGGCTTCCTAGTTTGTTCTAATTGTATAACTAGAAATGAGAACCATTCTAATGGTTCCGCA-T-CTATGAAAGAATAATATGATAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTGTGTACGCATATTGGAAATTACCTAACGACGCGTGTGGTGTCTACGGTCTGATTAATCAATAAAG-GAACACAGCGAGGAGGTACCGTTTATTCTTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGCGTGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCTGCCCGCCCTGCCATGCCGCTTAAGGGGAAACAC
gi|3 : TGTCAACACCTTCAGTTGCTTATCAAAACAATCACACATGGTGCGTGTGTGTGTGT----GTGT------AC----------CGCTGGCTTCCTAGTTTGTTCTAATTGTATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCAGT-CTATGAAAGAATAATATGATAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTATGTACGCATATTGGAAATTACCTAACAACGCATGTAGTGTCTACGGTCTGATTAGTCAATAAA------ACAGCGGGGAGGTACCGTTTATTCTTCACAGCGTTGTC-TTTCATTGTTTAT-T---AA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGCAAGGCGGTATAAGAAAAGGGCAGGGCGGCATAGGAAAAGGGCGGGGCAGCCCGCCCTGCCATGCCGCTTCAGGGGAAACAC
gi|7 : TGTCAACACCTTCAGTTGCTTATCAAAACAATTGCACATGGTGCATG--TGTGTGT----GTGT------AC----------CGCTGGCTTCCTAGTTTGTTATAATTAGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGGG-TTCTATGAAAGAATAATATGAAAATGCACTAAAAGCGGGAACCATGTGATAATCAAGTGTATACACATATTGGAAATTACCTAACGACGCGTGTAGTGTCTACAGTCTGATTAGCCAATAAAG-GAACACAGCGGGGAGGTACTGTTTATTCTTCACAGCAGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTATATTAAGCGTGGCAGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCAGGGCAGCCTGCCCCACCATGCCGCta
gi|2 : TGTCAACACCTTCAGTTGCTTATCAAAACAATCATACATGGTGCGTGTGTGTGTGT----GTGT------GC----------CACTCGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCG-TTCTATGAACGAATAATATGAAAATGCACTAAAAGCGAGAACCATGTGTTAATCGAGTGTATACGCATATTGGAAATTACCAAACGACGTGTGTAGTGTCTATGGTCTGATAAGCCAATAAAAAGAACACAGCGGGGAGGTACCGTTTATTCATCACAGCGGTGTT-TATCATTGTTTAC-TAAAAA-GGGCACTGC-AGGGCAGTAATTAT-TTAAGCGTGGCTGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCGGCCCGCCCCGCCATGCCGCTTTAGGGGAAACAC
gi|6 : TGTCAACACCTTCAGTTGCTTATCAAAACAATCGCACATGGTGCA----TGTGTGT----GTGC------AC----------CGCTTGCTTC-TAGTCTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCG-TTCTATGAAAGAATAATATGAAAATACACTAAAAGCGGGAACCATGTGTTAATCGAGTGTATACGCATATTGGAAATTACCTAATGATGTGTGTAGTGTCTATGGTCTGATTAGCCAATAAAG-AAACACAGCGGGGAGGTACCGTTTATTCATCACAGCGGTGTT-TATCATTGTTTAC-TCAAAA-GGGCACTGCAGGGGCGGTAATTAT-TTAAGCAGGGCGGTATAAGAAAAGGGTAGGGCGGCATA-AAAAAGGG-GG------CCGCCCCGCCATGCCGCTTTAGGGGAAACA
gi|11 : TGTCAACACCTTCAGTTGCTTATCAAAACAATCGCACATGGTGCA----TGTGTGT----GTGT------AC----------CGCTGGCTTCCTAGTTTGTTCTAATTGTATAGCTTGAAATGAGAACCATTCTAATGGTTCCTCAGT-CTATGAAAGAATAATATGATAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTGTGTACGCATATTGGAAATTACCTAACGACACGTGTAGTGTCTACGGTCTGATTAGCCAATAAAG-GAAAACAGCGGGGAGGTACCGTTTATTCTTCACAGTGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTAT-
gi|1 : TGTCAGCACCTTCAGTTGTTTATCAAAACAATCGCACATGGTatcag
gi|16 : TGTCAACACGTTCAGTTGCTTATCAAAACAATCGCACATGGTG------CGTGTGT----GTAT------AC----------TGCTGGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTT-CTATGAAAGAATAATATGtcgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcgctggcttcctagtttgatataattggatagcttgaaatgagaaccattctaatggttccgcgttctataaaagaataaaatgaaaatggactaaaagtgggaaccatgtattaaccgtgtgtacatgcatattggaaattacctaacgacgcgtgtattatctacggtctgattagccaataaaggaacacagcggggaggtaccatttattcctcacagcggtgtctatcattgtttattaaaaagggcactgcggggcggtaattatttaagcgtggcagtttaaaaaagggcagagtggcataaaaaagggcggggccatgccgctttaggggaaacac
gi|8 : GTCAACACCTTCAGTTGCTTATCAAAACAATCGCACATGGTG------CGTGTGTTTGTGTGT------AC----------CGCTGGCTTCCTAGTTTGTTATAATTGTATAGCT-GAAATGAGAACCATTCTAATGGTTCCGCGGT-CTATAAAAGAATAATATGAAAATGCACTAAAAGCGGGAACCATGTGTTAATCGCGTGTGTAGGCATATTGGAAATTACCTAATGACGCGTGTAGTGT-----------TTAGCCAATAAAG-GAACACAGCGGGGAGGTACC-TTTATTCTTCACAGCGGTGTCTTATCATTGTTTAT-TGAAAA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGAGTGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGTGGGGCAGCCCGCCCTGCCATGCCGCTTTAGGG
gi|5 : GTCAACACCTTCAGTTGCTTATCAAAACAATCACACATGGTGCG----TGTGTGT----GTGT------AC----------CACTGGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCG-TTCTATGAAAGAATAATATGATAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTGTATATGCATATTGGAAATTACCTAACAACGCGTGAAGTGTCTACGGTCTGATTAGCCAATAAAG-GAACACAGTGGGGAGGTAGCGTTTATTTTTCACAGCGGTGTC-TATCATTGTTTATAAAAAAA-GAGCACTGC-AGGGCAGTAATTAT-TTTAGCATGGTGGTATAAGAAAAGGGCAGGGCGTTATAGAAAAAGGGCGG------------------GTCGCTTTAGGGGAAACAC
gi|10 : GTCAACACCTTCAGTTGCTTGTCAAAACAATCGCACATGGTG------CGTGTGT----GTGTGTGTATAC----------CGCTGGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTTCGCG-TTCTATGAAAAAATAATATGATAATGCACTAAAAGCAGGAACCATGTGTTAATCGAGGGTATACGCATATAGGAAATTACCTAACGACGCATGTAGTGTCTATGGTCTGATTAGCCAATATAA-GAACAAAGCGAGGAGGTACCGTTTATTCTTCACAGTGGTGTC-TATCGTTGTTTAT-TAAAAA-GGGCATTtatagttccacaca
gi|15 : TTCAGTTGCTTATCAAAACAATCACACATGGTG------TGCGTGT----GTGT------ATGTGAGTGTGTCACTGGCTTCCTAGTTTGTTATAATTGCTTAGCTTGGAATGAGAACCATTTTAAGGGTTCCGCATT-CTTTGAAAGGATAATAaagaaaagggcagggtggccgccccgccatgccgcttatggggaaac
gi|9 : G------TGTGTGT----GTGT------AC----------CGCTGGCTTCCTAGTTTGTTCTAATAGTATAGCTTGAAATGAGAACCATTCTAATGGTTCAGCGGT-CTATAAAAGAATAATATGATAATGCACTAAAAGCGAGAACCATGTGTTAAT-GAGTGTGTACGCATATTGGAAATTACGTAACGACGCGTGTAGTGTCTACGGTCTGATTAGCCAATAAAA-GAACACAGTGGGGAGGTACCGTTTATTCTTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAAGGGGCACTGC-GGGGCGGTAATTAT-TTAAGCATGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCGGCCCGCCCTGCCATGCTGCTTTAGGGGAAACACggggaaacact
gi|1 : ------AT----------CGCTGGCTTCCTAGTTTGATATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCG-TTCTATAAAAGAATAAAATGAAAATGGACTAAAAGTGGGAACCATGTATTAACCGTGTGTACATGCATATTGGAAATTACCTAACGACGCGTGTATTATCTACGGTCTGATTAGCCAATAAAG-GAACACAGCGGGGAGGTACCATTTATTCCTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGCGTGGCAGTTTAA-AAAAGGGCAGAGTGGCATA-AAAAAGGGCGGG------------GCCATGCCGCTTTAGGGGAAACACta
gi|12 : tgtcagcaccttcagttgtttatcaaaacaatcgcacatggttcgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATATGATAATGCACTAAAAGTGGGAACCATGTGTTAATCGAGTGTGTACGCATATTGGAAATTACCTAACGACGCATGTAGTGTCTACGGTCTGATTAGCCAATAAAG-GGACACAGCGGGGAGGTACCGTTTATTCTTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-AAGGCTGTAATTAT-TTAAGCGTGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCGGCCCGCCCTGCCATGCCGCTTTAGGGGAAAC
gi|13 : ttCGAGTGAATACTAATATTGGAAATTACCTAACGACATGTGTAGTGTCTACGGTCCGATTAGCTAATAAAG-GAACGCAGTAGGGAGGTACCGTTTATTATTCACAGTGTTGTCTTATCATTGTTTAT-CAAAAA-GGGCACTGT-GGGGCGGTAATTAT-TTAAGCATGGTGGTATAAGAAAA----AGGG-GGCA-------------------CCCGTCCCACCATGCCGCTTTAGGGGGAA
gi|17 : ACGCGTGTAGTGTCTACGGTCTGATTAGCCAATAAAG-GAACACAGCGGGGAGGTACGGTTTATT
gi|14 : ACCTTTTATTCTTCACAGTGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGT-GGGGCAGTAATTAT-TTAAGCGTGGTGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGTGGGGTGGCCCGCCCCGCCATGTCGCTTTAGGGGAAACAC
gi|10 : AAAAGGGCAT-------TAAGAAAAGGGCAGGG-TGGCCGCCCCGCCATGCCGCTTATGGGGAAAC
Alignments
lowQualScore : 1111
lowQualScore : 44 44 4444 44 999999 6666 1 1 2 5 2 2 3 3 0 5
lowQualScore : .. .. .... .. ...... .... . . . . . . . . . .
lowQualScore : 66 22 2222 66 666666 5555 5 0 9 7 9 9 1 1 8 2
consensus : TGTCAACACCTTCAGTTGCTTATCAAAACAATCGCACATGGTG--C--GTGT----GT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATGAAAGAATAATATGANAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTGTGTACGCATATTGGAAATTACCTAACGACGCGTGTAGTGTCTACGGTCTGATTAGCCAAT-AAAGGAACACAGCGGGGAGGTACCGTTTATTCTTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGCGTGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCGGCCCGCCCCGCCATGCCGCTTTAGGGGAAACAC
Reference ( family-5189 ) : TGTCAACACCTTCAGTTGCTTATCAAAACAATCGCACATGGTG--C--GTGT----GT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATGAAAGAATAATATGANAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTGTATACGCATATTGGAAATTACCTAACGACGCGTGTAGTGTCTACGGTCTGATTAGCCAAT-AAAGGAACACAGCGGGGAGGTACCGTTTATTCTTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGCGTGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCGGCCCGCCCCGCCATGCCGCTTTAGGGGAAACAC
gi|1 : TGTCAGCACCTTCAGTTGTTTATCAAAACAATCGCACATGGTT--C--GT
gi|1 : ----ATCGCTGGCTTCCTAGTTTGATATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATAAAAGAATAAAATGAAAATGGACTAAAAGTGGGAACCATGTATTAACCGTGTGTACATGCATATTGGAAATTACCTAACGACGCGTGTATTATCTACGGTCTGATTAGCCAAT-AAAGGAACACAGCGGGGAGGTACCATTTATTCCTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGCGTGGCAGTTTAA-AAAAGGGCAGAGTGGCATA-AAAAAGGGCGGGGC------------CATGCCGCTTTAGGGGAAACACtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcgctggcttcctagtttgatataattggatagcttgaaatgagaaccattctaatggttccgcgttctataaaagaataaaatgaaaatggactaaaagtgggaaccatgtattaaccgtgtgtacatgcatattggaaattacctaacgacgcgtgtattatctacggtctgattagccaataaaggaacacagcggggaggtaccatttattcctcacagcggtgtctatcattgtttattaaaaagggcactgcggggcggtaattatttaagcgtggcagtttaaaaaagggcagagtggcataaaaaagggcggggccatgccgctttaggggaaacac
gi|10 : tgtcagcaccttcagttgtttatcaaaacaatcgcacatggttcgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTCAACACCTTCAGTTGCTTGTCAAAACAATCGCACATGGTG--C--GTGT----GT--GT------GTGTGTATACCGCTGGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTTCGCGTTCTATGAAAAAATAATATGATAATGCACTAAAAGCAGGAACCATGTGTTAATCGAGGGTATACGCATATAGGAAATTACCTAACGACGCATGTAGTGTCTATGGTCTGATTAGCCAAT-ATAAGAACAAAGCGAGGAGGTACCGTTTATTCTTCACAGTGGTGTC-TATCGTTGTTTAT-TAAAAA-GGGCATT
gi|10 : AAAAGGGCAT-------TAAGAAAAGGGCAGGGTGG-CCGCCCCGCCATGCCGCTTATGGGGAAACaagaaaagggcagggtggccgccccgccatgccgcttatggggaaac
gi|11 : gtcaacaccttcagttgcttgtcaaaacaatcgcacatggtgcgtgtgtgtgtgtgtataccgctggcttcctagtttgttataattggatagcttgaaatgagaaccattctaatggtttcgcgttctatgaaaaaataatatgataatgcactaaaagcaggaaccatgtgttaatcgagggtatacgcatataggaaattacctaacgacgcatgtagtgtctatggtctgattagccaatataagaacaaagcgaggaggtaccgtttattcttcacagtggtgtctatcgttgtttattaTGTCAACACCTTCAGTTGCTTATCAAAACAATCGCACATGGTG--C--ATGT----GT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTCTAATTGTATAGCTTGAAATGAGAACCATTCTAATGGTTCCTCAGTCTATGAAAGAATAATATGATAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTGTGTACGCATATTGGAAATTACCTAACGACACGTGTAGTGTCTACGGTCTGATTAGCCAAT-AAAGGAAAACAGCGGGGAGGTACCGTTTATTCTTCACAGTGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTAT-
gi|12 : ATATGATAATGCACTAAAAGTGGGAACCATGTGTTAATCGAGTGTGTACGCATATTGGAAATTACCTAACGACGCATGTAGTGTCTACGGTCTGATTAGCCAAT-AAAGGGACACAGCGGGGAGGTACCGTTTATTCTTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-AAGGCTGTAATTAT-TTAAGCGTGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCGGCCCGCCCTGCCATGCCGCTTTAGGGGAAACatcag
gi|13 : ttCGAGTGAATACTAATATTGGAAATTACCTAACGACATGTGTAGTGTCTACGGTCCGATTAGCTAAT-AAAGGAACGCAGTAGGGAGGTACCGTTTATTATTCACAGTGTTGTCTTATCATTGTTTAT-CAAAAA-GGGCACTGT-GGGGCGGTAATTAT-TTAAGCATGGTGGTATAAGAAAA----AGGG-GGCA-------------------CCCGTCCCACCATGCCGCTTTAGGGGGAA
gi|14 : ACCTTTTATTCTTCACAGTGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGT-GGGGCAGTAATTAT-TTAAGCGTGGTGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGTGGGGTGGCCCGCCCCGCCATGTCGCTTTAGGGGAAACAC
gi|15 : TTCAGTTGCTTATCAAAACAATCACACATGGTGTGC--GTGT----GT--GTATGTGAGTGT----GTCACTGGCTTCCTAGTTTGTTATAATTGCTTAGCTTGGAATGAGAACCATTTTAAGGGTTCCGCATTCTTTGAAAGGATAATAGGGGAA-ACACT
gi|16 : TGTCAACACGTTCAGTTGCTTATCAAAACAATCGCACATGGTG--C--GTGT----GT--GT------AT------ACTGCTGGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATGAAAGAATAATATG
gi|17 : ACGCGTGTAGTGTCTACGGTCTGATTAGCCAAT-AAAGGAACACAGCGGGGAGGTACGGTTTATT
gi|2 : TGTCAACACCTTCAGTTGCTTATCAAAACAATCATACATGGTG--C--GTGTGTGTGT--GT------GTGT----GCCACTCGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATGAACGAATAATATGAAAATGCACTAAAAGCGAGAACCATGTGTTAATCGAGTGTATACGCATATTGGAAATTACCAAACGACGTGTGTAGTGTCTATGGTCTGATAAGCCAATAAAAAGAACACAGCGGGGAGGTACCGTTTATTCATCACAGCGGTGTT-TATCATTGTTTAC-TAAAAA-GGGCACTGC-AGGGCAGTAATTAT-TTAAGCGTGGCTGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCGGCCCGCCCCGCCATGCCGCTTTAGGGGAAACAC
gi|3 : TGTCAACACCTTCAGTTGCTTATCAAAACAATCACACATGGTG--C--GTGTGTGTGT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTCTAATTGTATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCAGTCTATGAAAGAATAATATGATAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTATGTACGCATATTGGAAATTACCTAACAACGCATGTAGTGTCTACGGTCTGATTAGTCAAT-AAA-----ACAGCGGGGAGGTACCGTTTATTCTTCACAGCGTTGTC-TTTCATTGTTTAT-T---AA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGCAAGGCGGTATAAGAAAAGGGCAGGGCGGCATAGGAAAAGGGCGGGGCAGCCCGCCCTGCCATGCCGCTTCAGGGGAAACAC
gi|4 : TGTCAATACCTTCAGTTGCTTATCAAAACAATCGCACATGGTG------TGT----GT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTCTAATTGTATAACTAGAAATGAGAACCATTCTAATGGTTCCGCAT-CTATGAAAGAATAATATGATAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTGTGTACGCATATTGGAAATTACCTAACGACGCGTGTGGTGTCTACGGTCTGATTAATCAAT-AAAGGAACACAGCGAGGAGGTACCGTTTATTCTTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGCGTGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCTGCCCGCCCTGCCATGCCGCTTAAGGGGAAACACta
gi|5 : GTCAACACCTTCAGTTGCTTATCAAAACAATCACACATGGTG--C--GTGT----GT--GT------GTGT----ACCACTGGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATGAAAGAATAATATGATAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTGTATATGCATATTGGAAATTACCTAACAACGCGTGAAGTGTCTACGGTCTGATTAGCCAAT-AAAGGAACACAGTGGGGAGGTAGCGTTTATTTTTCACAGCGGTGTC-TATCATTGTTTATAAAAAAA-GAGCACTGC-AGGGCAGTAATTAT-TTTAGCATGGTGGTATAAGAAAAGGGCAGGGCGTTATAGAAAAAGGGCGG------------------GTCGCTTTAGGGGAAACAC
gi|6 : TGTCAACACCTTCAGTTGCTTATCAAAACAATCGCACATGGTG--C--ATGT----GT--GT------GTGC----ACCGCTTGCTTC-TAGTCTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATGAAAGAATAATATGAAAATACACTAAAAGCGGGAACCATGTGTTAATCGAGTGTATACGCATATTGGAAATTACCTAATGATGTGTGTAGTGTCTATGGTCTGATTAGCCAAT-AAAGAAACACAGCGGGGAGGTACCGTTTATTCATCACAGCGGTGTT-TATCATTGTTTAC-TCAAAA-GGGCACTGCAGGGGCGGTAATTAT-TTAAGCAGGGCGGTATAAGAAAAGGGTAGGGCGGCATA-AAAAAGGG-GG------CCGCCCCGCCATGCCGCTTTAGGGGAAACAtatagttccacaca
gi|7 : TGTCAACACCTTCAGTTGCTTATCAAAACAATTGCACATGGTG--CATGTGT----GT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTATAATTAGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGGGTTCTATGAAAGAATAATATGAAAATGCACTAAAAGCGGGAACCATGTGATAATCAAGTGTATACACATATTGGAAATTACCTAACGACGCGTGTAGTGTCTACAGTCTGATTAGCCAAT-AAAGGAACACAGCGGGGAGGTACTGTTTATTCTTCACAGCAGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTATATTAAGCGTGGCAGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCAGGGCAGCCTGCCCCACCATGCCGC
gi|8 : GTCAACACCTTCAGTTGCTTATCAAAACAATCGCACATGGTG--C--GTGT----GTTTGT------GTGT----ACCGCTGGCTTCCTAGTTTGTTATAATTGTATAGCT-GAAATGAGAACCATTCTAATGGTTCCGCGGTCTATAAAAGAATAATATGAAAATGCACTAAAAGCGGGAACCATGTGTTAATCGCGTGTGTAGGCATATTGGAAATTACCTAATGACGCGTGTAGTGT-----------TTAGCCAAT-AAAGGAACACAGCGGGGAGGTACC-TTTATTCTTCACAGCGGTGTCTTATCATTGTTTAT-TGAAAA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGAGTGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGTGGGGCAGCCCGCCCTGCCATGCCGCTTTAGGG
gi|9 : --GTGT----GT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTCTAATAGTATAGCTTGAAATGAGAACCATTCTAATGGTTCAGCGGTCTATAAAAGAATAATATGATAATGCACTAAAAGCGAGAACCATGTGTTAAT-GAGTGTGTACGCATATTGGAAATTACGTAACGACGCGTGTAGTGTCTACGGTCTGATTAGCCAAT-AAAAGAACACAGTGGGGAGGTACCGTTTATTCTTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAAGGGGCACTGC-GGGGCGGTAATTAT-TTAAGCATGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCGGCCCGCCCTGCCATGCTGCTTTAGGGGAAACAC
Alignments
lowQualScore : 1111
lowQualScore : 44 44 4444 44 999999 6666 1 1 2 5 2 2 3 3 0 5
lowQualScore : .. .. .... .. ...... .... . . . . . . . . . .
lowQualScore : 66 22 2222 66 666666 5555 5 0 9 7 9 9 1 1 8 2
consensus : TGTCAACACCTTCAGTTGCTTATCAAAACAATCGCACATGGTG--C--GTGT----GT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATGAAAGAATAATATGANAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTGTGTACGCATATTGGAAATTACCTAACGACGCGTGTAGTGTCTACGGTCTGATTAGCCAAT-AAAGGAACACAGCGGGGAGGTACCGTTTATTCTTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGCGTGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCGGCCCGCCCCGCCATGCCGCTTTAGGGGAAACAC
Reference ( family-5189 ) : TGTCAACACCTTCAGTTGCTTATCAAAACAATCGCACATGGTG--C--GTGT----GT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATGAAAGAATAATATGANAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTGTGTACGCATATTGGAAATTACCTAACGACGCGTGTAGTGTCTACGGTCTGATTAGCCAAT-AAAGGAACACAGCGGGGAGGTACCGTTTATTCTTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGCGTGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCGGCCCGCCCCGCCATGCCGCTTTAGGGGAAACAC
gi|1 : TGTCAGCACCTTCAGTTGTTTATCAAAACAATCGCACATGGTT--C--GT
gi|1 : ----ATCGCTGGCTTCCTAGTTTGATATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATAAAAGAATAAAATGAAAATGGACTAAAAGTGGGAACCATGTATTAACCGTGTGTACATGCATATTGGAAATTACCTAACGACGCGTGTATTATCTACGGTCTGATTAGCCAAT-AAAGGAACACAGCGGGGAGGTACCATTTATTCCTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGCGTGGCAGTTTAA-AAAAGGGCAGAGTGGCATA-AAAAAGGGCGGGGC------------CATGCCGCTTTAGGGGAAACACtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcgctggcttcctagtttgatataattggatagcttgaaatgagaaccattctaatggttccgcgttctataaaagaataaaatgaaaatggactaaaagtgggaaccatgtattaaccgtgtgtacatgcatattggaaattacctaacgacgcgtgtattatctacggtctgattagccaataaaggaacacagcggggaggtaccatttattcctcacagcggtgtctatcattgtttattaaaaagggcactgcggggcggtaattatttaagcgtggcagtttaaaaaagggcagagtggcataaaaaagggcggggccatgccgctttaggggaaacac
gi|10 : tgtcagcaccttcagttgtttatcaaaacaatcgcacatggttcgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTCAACACCTTCAGTTGCTTGTCAAAACAATCGCACATGGTG--C--GTGT----GT--GT------GTGTGTATACCGCTGGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTTCGCGTTCTATGAAAAAATAATATGATAATGCACTAAAAGCAGGAACCATGTGTTAATCGAGGGTATACGCATATAGGAAATTACCTAACGACGCATGTAGTGTCTATGGTCTGATTAGCCAAT-ATAAGAACAAAGCGAGGAGGTACCGTTTATTCTTCACAGTGGTGTC-TATCGTTGTTTAT-TAAAAA-GGGCATT
gi|10 : AAAAGGGCAT-------TAAGAAAAGGGCAGGGTGG-CCGCCCCGCCATGCCGCTTATGGGGAAACaagaaaagggcagggtggccgccccgccatgccgcttatggggaaac
gi|11 : gtcaacaccttcagttgcttgtcaaaacaatcgcacatggtgcgtgtgtgtgtgtgtataccgctggcttcctagtttgttataattggatagcttgaaatgagaaccattctaatggtttcgcgttctatgaaaaaataatatgataatgcactaaaagcaggaaccatgtgttaatcgagggtatacgcatataggaaattacctaacgacgcatgtagtgtctatggtctgattagccaatataagaacaaagcgaggaggtaccgtttattcttcacagtggtgtctatcgttgtttattaTGTCAACACCTTCAGTTGCTTATCAAAACAATCGCACATGGTG--C--ATGT----GT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTCTAATTGTATAGCTTGAAATGAGAACCATTCTAATGGTTCCTCAGTCTATGAAAGAATAATATGATAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTGTGTACGCATATTGGAAATTACCTAACGACACGTGTAGTGTCTACGGTCTGATTAGCCAAT-AAAGGAAAACAGCGGGGAGGTACCGTTTATTCTTCACAGTGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTAT-
gi|12 : ATATGATAATGCACTAAAAGTGGGAACCATGTGTTAATCGAGTGTGTACGCATATTGGAAATTACCTAACGACGCATGTAGTGTCTACGGTCTGATTAGCCAAT-AAAGGGACACAGCGGGGAGGTACCGTTTATTCTTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-AAGGCTGTAATTAT-TTAAGCGTGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCGGCCCGCCCTGCCATGCCGCTTTAGGGGAAACatcag
gi|13 : ttCGAGTGAATACTAATATTGGAAATTACCTAACGACATGTGTAGTGTCTACGGTCCGATTAGCTAAT-AAAGGAACGCAGTAGGGAGGTACCGTTTATTATTCACAGTGTTGTCTTATCATTGTTTAT-CAAAAA-GGGCACTGT-GGGGCGGTAATTAT-TTAAGCATGGTGGTATAAGAAAA----AGGG-GGCA-------------------CCCGTCCCACCATGCCGCTTTAGGGGGAA
gi|14 : ACCTTTTATTCTTCACAGTGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGT-GGGGCAGTAATTAT-TTAAGCGTGGTGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGTGGGGTGGCCCGCCCCGCCATGTCGCTTTAGGGGAAACAC
gi|15 : TTCAGTTGCTTATCAAAACAATCACACATGGTGTGC--GTGT----GT--GTATGTGAGTGT----GTCACTGGCTTCCTAGTTTGTTATAATTGCTTAGCTTGGAATGAGAACCATTTTAAGGGTTCCGCATTCTTTGAAAGGATAATAGGGGAA-ACACT
gi|16 : TGTCAACACGTTCAGTTGCTTATCAAAACAATCGCACATGGTG--C--GTGT----GT--GT------AT------ACTGCTGGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATGAAAGAATAATATG
gi|17 : ACGCGTGTAGTGTCTACGGTCTGATTAGCCAAT-AAAGGAACACAGCGGGGAGGTACGGTTTATT
gi|2 : TGTCAACACCTTCAGTTGCTTATCAAAACAATCATACATGGTG--C--GTGTGTGTGT--GT------GTGT----GCCACTCGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATGAACGAATAATATGAAAATGCACTAAAAGCGAGAACCATGTGTTAATCGAGTGTATACGCATATTGGAAATTACCAAACGACGTGTGTAGTGTCTATGGTCTGATAAGCCAATAAAAAGAACACAGCGGGGAGGTACCGTTTATTCATCACAGCGGTGTT-TATCATTGTTTAC-TAAAAA-GGGCACTGC-AGGGCAGTAATTAT-TTAAGCGTGGCTGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCGGCCCGCCCCGCCATGCCGCTTTAGGGGAAACAC
gi|3 : TGTCAACACCTTCAGTTGCTTATCAAAACAATCACACATGGTG--C--GTGTGTGTGT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTCTAATTGTATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCAGTCTATGAAAGAATAATATGATAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTATGTACGCATATTGGAAATTACCTAACAACGCATGTAGTGTCTACGGTCTGATTAGTCAAT-AAA-----ACAGCGGGGAGGTACCGTTTATTCTTCACAGCGTTGTC-TTTCATTGTTTAT-T---AA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGCAAGGCGGTATAAGAAAAGGGCAGGGCGGCATAGGAAAAGGGCGGGGCAGCCCGCCCTGCCATGCCGCTTCAGGGGAAACAC
gi|4 : TGTCAATACCTTCAGTTGCTTATCAAAACAATCGCACATGGTG------TGT----GT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTCTAATTGTATAACTAGAAATGAGAACCATTCTAATGGTTCCGCAT-CTATGAAAGAATAATATGATAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTGTGTACGCATATTGGAAATTACCTAACGACGCGTGTGGTGTCTACGGTCTGATTAATCAAT-AAAGGAACACAGCGAGGAGGTACCGTTTATTCTTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGCGTGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCTGCCCGCCCTGCCATGCCGCTTAAGGGGAAACACta
gi|5 : GTCAACACCTTCAGTTGCTTATCAAAACAATCACACATGGTG--C--GTGT----GT--GT------GTGT----ACCACTGGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATGAAAGAATAATATGATAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTGTATATGCATATTGGAAATTACCTAACAACGCGTGAAGTGTCTACGGTCTGATTAGCCAAT-AAAGGAACACAGTGGGGAGGTAGCGTTTATTTTTCACAGCGGTGTC-TATCATTGTTTATAAAAAAA-GAGCACTGC-AGGGCAGTAATTAT-TTTAGCATGGTGGTATAAGAAAAGGGCAGGGCGTTATAGAAAAAGGGCGG------------------GTCGCTTTAGGGGAAACAC
gi|6 : TGTCAACACCTTCAGTTGCTTATCAAAACAATCGCACATGGTG--C--ATGT----GT--GT------GTGC----ACCGCTTGCTTC-TAGTCTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATGAAAGAATAATATGAAAATACACTAAAAGCGGGAACCATGTGTTAATCGAGTGTATACGCATATTGGAAATTACCTAATGATGTGTGTAGTGTCTATGGTCTGATTAGCCAAT-AAAGAAACACAGCGGGGAGGTACCGTTTATTCATCACAGCGGTGTT-TATCATTGTTTAC-TCAAAA-GGGCACTGCAGGGGCGGTAATTAT-TTAAGCAGGGCGGTATAAGAAAAGGGTAGGGCGGCATA-AAAAAGGG-GG------CCGCCCCGCCATGCCGCTTTAGGGGAAACAtatagttccacaca
gi|7 : TGTCAACACCTTCAGTTGCTTATCAAAACAATTGCACATGGTG--CATGTGT----GT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTATAATTAGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGGGTTCTATGAAAGAATAATATGAAAATGCACTAAAAGCGGGAACCATGTGATAATCAAGTGTATACACATATTGGAAATTACCTAACGACGCGTGTAGTGTCTACAGTCTGATTAGCCAAT-AAAGGAACACAGCGGGGAGGTACTGTTTATTCTTCACAGCAGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTATATTAAGCGTGGCAGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCAGGGCAGCCTGCCCCACCATGCCGC
gi|8 : GTCAACACCTTCAGTTGCTTATCAAAACAATCGCACATGGTG--C--GTGT----GTTTGT------GTGT----ACCGCTGGCTTCCTAGTTTGTTATAATTGTATAGCT-GAAATGAGAACCATTCTAATGGTTCCGCGGTCTATAAAAGAATAATATGAAAATGCACTAAAAGCGGGAACCATGTGTTAATCGCGTGTGTAGGCATATTGGAAATTACCTAATGACGCGTGTAGTGT-----------TTAGCCAAT-AAAGGAACACAGCGGGGAGGTACC-TTTATTCTTCACAGCGGTGTCTTATCATTGTTTAT-TGAAAA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGAGTGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGTGGGGCAGCCCGCCCTGCCATGCCGCTTTAGGG
gi|9 : --GTGT----GT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTCTAATAGTATAGCTTGAAATGAGAACCATTCTAATGGTTCAGCGGTCTATAAAAGAATAATATGATAATGCACTAAAAGCGAGAACCATGTGTTAAT-GAGTGTGTACGCATATTGGAAATTACGTAACGACGCGTGTAGTGTCTACGGTCTGATTAGCCAAT-AAAAGAACACAGTGGGGAGGTACCGTTTATTCTTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAAGGGGCACTGC-GGGGCGGTAATTAT-TTAAGCATGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCGGCCCGCCCTGCCATGCTGCTTTAGGGGAAACAC
blockSeqs : TG AT GTGT TT ATGTGA GTAT G T A T A G A A G
blockSeqs : . . GTGT . . . T T . T . . . . G
blockSeqs : . . . . . . C T . . . . . . G
blockSeqs : . . . . . . G G . . . . . . G
blockSeqs : . . . . . . G A . . . . . . A
blockSeqs : . . . . . . T T . . . . . . T
blockSeqs : . . . . . . T T . . . . . . A
blockSeqs : . . . . . . G T . . . . . . A
blockSeqs : . . . . . . G A . . . . . . G
blockSeqs : . . . . . . G A . . . . . . .
blockSeqs : . . . . . . T A . . . . . . .
blockSeqs : . . T T . . . . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : TGTCAACACCTTCAGTTGCTTATCAAAACAATCGCACATGGTG--C--GTGT----GT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATGAAAGAATAATATGANAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTGTGTACGCATATTGGAAATTACCTAACGACGCGTGTAGTGTCTACGGTCTGATTAGCCAAT-AAAGGAACACAGCGGGGAGGTACCGTTTATTCTTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGCGTGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCGGCCCGCCCCGCCATGCCGCTTTAGGGGAAACAC
finalCons : TGTCAACACCTTCAGTTGCTTATCAAAACAATCGCACATGGTG--C--GTGT----GT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATGAAAGAATAATATGANAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTGTGTACGCATATTGGAAATTACCTAACGACGCGTGTAGTGTCTACGGTCTGATTAGCCAAT-AAAGGAACACAGCGGGGAGGTACCGTTTATTCTTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGCGTGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCGGCCCGCCCCGCCATGCCGCTTTAGGGGAAACAC
Alignments
lowQualScore : 1111
lowQualScore : 44 44 4444 44 999999 6666 1 1 2 5 2 2 3 3 0 5
lowQualScore : .. .. .... .. ...... .... . . . . . . . . . .
lowQualScore : 66 22 2222 66 666666 5555 5 0 9 7 9 9 1 1 8 2
consensus : TGTCAACACCTTCAGTTGCTTATCAAAACAATCGCACATGGTG--C--GTGT----GT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATGAAAGAATAATATGANAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTGTGTACGCATATTGGAAATTACCTAACGACGCGTGTAGTGTCTACGGTCTGATTAGCCAAT-AAAGGAACACAGCGGGGAGGTACCGTTTATTCTTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGCGTGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCGGCCCGCCCCGCCATGCCGCTTTAGGGGAAACAC
Reference ( family-5189 ) : TGTCAACACCTTCAGTTGCTTATCAAAACAATCGCACATGGTG--C--GTGT----GT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATGAAAGAATAATATGANAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTGTGTACGCATATTGGAAATTACCTAACGACGCGTGTAGTGTCTACGGTCTGATTAGCCAAT-AAAGGAACACAGCGGGGAGGTACCGTTTATTCTTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGCGTGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCGGCCCGCCCCGCCATGCCGCTTTAGGGGAAACAC
gi|1 : TGTCAGCACCTTCAGTTGTTTATCAAAACAATCGCACATGGTT--C--GT
gi|1 : ----ATCGCTGGCTTCCTAGTTTGATATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATAAAAGAATAAAATGAAAATGGACTAAAAGTGGGAACCATGTATTAACCGTGTGTACATGCATATTGGAAATTACCTAACGACGCGTGTATTATCTACGGTCTGATTAGCCAAT-AAAGGAACACAGCGGGGAGGTACCATTTATTCCTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGCGTGGCAGTTTAA-AAAAGGGCAGAGTGGCATA-AAAAAGGGCGGGGC------------CATGCCGCTTTAGGGGAAACACtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcgctggcttcctagtttgatataattggatagcttgaaatgagaaccattctaatggttccgcgttctataaaagaataaaatgaaaatggactaaaagtgggaaccatgtattaaccgtgtgtacatgcatattggaaattacctaacgacgcgtgtattatctacggtctgattagccaataaaggaacacagcggggaggtaccatttattcctcacagcggtgtctatcattgtttattaaaaagggcactgcggggcggtaattatttaagcgtggcagtttaaaaaagggcagagtggcataaaaaagggcggggccatgccgctttaggggaaacac
gi|10 : tgtcagcaccttcagttgtttatcaaaacaatcgcacatggttcgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTCAACACCTTCAGTTGCTTGTCAAAACAATCGCACATGGTG--C--GTGT----GT--GT------GTGTGTATACCGCTGGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTTCGCGTTCTATGAAAAAATAATATGATAATGCACTAAAAGCAGGAACCATGTGTTAATCGAGGGTATACGCATATAGGAAATTACCTAACGACGCATGTAGTGTCTATGGTCTGATTAGCCAAT-ATAAGAACAAAGCGAGGAGGTACCGTTTATTCTTCACAGTGGTGTC-TATCGTTGTTTAT-TAAAAA-GGGCATT
gi|10 : AAAAGGGCAT-------TAAGAAAAGGGCAGGGTGG-CCGCCCCGCCATGCCGCTTATGGGGAAACaagaaaagggcagggtggccgccccgccatgccgcttatggggaaac
gi|11 : gtcaacaccttcagttgcttgtcaaaacaatcgcacatggtgcgtgtgtgtgtgtgtataccgctggcttcctagtttgttataattggatagcttgaaatgagaaccattctaatggtttcgcgttctatgaaaaaataatatgataatgcactaaaagcaggaaccatgtgttaatcgagggtatacgcatataggaaattacctaacgacgcatgtagtgtctatggtctgattagccaatataagaacaaagcgaggaggtaccgtttattcttcacagtggtgtctatcgttgtttattaTGTCAACACCTTCAGTTGCTTATCAAAACAATCGCACATGGTG--C--ATGT----GT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTCTAATTGTATAGCTTGAAATGAGAACCATTCTAATGGTTCCTCAGTCTATGAAAGAATAATATGATAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTGTGTACGCATATTGGAAATTACCTAACGACACGTGTAGTGTCTACGGTCTGATTAGCCAAT-AAAGGAAAACAGCGGGGAGGTACCGTTTATTCTTCACAGTGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTAT-
gi|12 : ATATGATAATGCACTAAAAGTGGGAACCATGTGTTAATCGAGTGTGTACGCATATTGGAAATTACCTAACGACGCATGTAGTGTCTACGGTCTGATTAGCCAAT-AAAGGGACACAGCGGGGAGGTACCGTTTATTCTTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-AAGGCTGTAATTAT-TTAAGCGTGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCGGCCCGCCCTGCCATGCCGCTTTAGGGGAAACatcag
gi|13 : ttCGAGTGAATACTAATATTGGAAATTACCTAACGACATGTGTAGTGTCTACGGTCCGATTAGCTAAT-AAAGGAACGCAGTAGGGAGGTACCGTTTATTATTCACAGTGTTGTCTTATCATTGTTTAT-CAAAAA-GGGCACTGT-GGGGCGGTAATTAT-TTAAGCATGGTGGTATAAGAAAA----AGGG-GGCA-------------------CCCGTCCCACCATGCCGCTTTAGGGGGAA
gi|14 : ACCTTTTATTCTTCACAGTGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGT-GGGGCAGTAATTAT-TTAAGCGTGGTGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGTGGGGTGGCCCGCCCCGCCATGTCGCTTTAGGGGAAACAC
gi|15 : TTCAGTTGCTTATCAAAACAATCACACATGGTGTGC--GTGT----GT--GTATGTGAGTGT----GTCACTGGCTTCCTAGTTTGTTATAATTGCTTAGCTTGGAATGAGAACCATTTTAAGGGTTCCGCATTCTTTGAAAGGATAATAGGGGAA-ACACT
gi|16 : TGTCAACACGTTCAGTTGCTTATCAAAACAATCGCACATGGTG--C--GTGT----GT--GT------AT------ACTGCTGGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATGAAAGAATAATATG
gi|17 : ACGCGTGTAGTGTCTACGGTCTGATTAGCCAAT-AAAGGAACACAGCGGGGAGGTACGGTTTATT
gi|2 : TGTCAACACCTTCAGTTGCTTATCAAAACAATCATACATGGTG--C--GTGTGTGTGT--GT------GTGT----GCCACTCGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATGAACGAATAATATGAAAATGCACTAAAAGCGAGAACCATGTGTTAATCGAGTGTATACGCATATTGGAAATTACCAAACGACGTGTGTAGTGTCTATGGTCTGATAAGCCAATAAAAAGAACACAGCGGGGAGGTACCGTTTATTCATCACAGCGGTGTT-TATCATTGTTTAC-TAAAAA-GGGCACTGC-AGGGCAGTAATTAT-TTAAGCGTGGCTGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCGGCCCGCCCCGCCATGCCGCTTTAGGGGAAACAC
gi|3 : TGTCAACACCTTCAGTTGCTTATCAAAACAATCACACATGGTG--C--GTGTGTGTGT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTCTAATTGTATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCAGTCTATGAAAGAATAATATGATAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTATGTACGCATATTGGAAATTACCTAACAACGCATGTAGTGTCTACGGTCTGATTAGTCAAT-AAA-----ACAGCGGGGAGGTACCGTTTATTCTTCACAGCGTTGTC-TTTCATTGTTTAT-T---AA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGCAAGGCGGTATAAGAAAAGGGCAGGGCGGCATAGGAAAAGGGCGGGGCAGCCCGCCCTGCCATGCCGCTTCAGGGGAAACAC
gi|4 : TGTCAATACCTTCAGTTGCTTATCAAAACAATCGCACATGGTG------TGT----GT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTCTAATTGTATAACTAGAAATGAGAACCATTCTAATGGTTCCGCAT-CTATGAAAGAATAATATGATAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTGTGTACGCATATTGGAAATTACCTAACGACGCGTGTGGTGTCTACGGTCTGATTAATCAAT-AAAGGAACACAGCGAGGAGGTACCGTTTATTCTTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGCGTGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCTGCCCGCCCTGCCATGCCGCTTAAGGGGAAACACta
gi|5 : GTCAACACCTTCAGTTGCTTATCAAAACAATCACACATGGTG--C--GTGT----GT--GT------GTGT----ACCACTGGCTTCCTAGTTTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATGAAAGAATAATATGATAATGCACTAAAAGCGGGAACCATGTGTTAATCGAGTGTATATGCATATTGGAAATTACCTAACAACGCGTGAAGTGTCTACGGTCTGATTAGCCAAT-AAAGGAACACAGTGGGGAGGTAGCGTTTATTTTTCACAGCGGTGTC-TATCATTGTTTATAAAAAAA-GAGCACTGC-AGGGCAGTAATTAT-TTTAGCATGGTGGTATAAGAAAAGGGCAGGGCGTTATAGAAAAAGGGCGG------------------GTCGCTTTAGGGGAAACAC
gi|6 : TGTCAACACCTTCAGTTGCTTATCAAAACAATCGCACATGGTG--C--ATGT----GT--GT------GTGC----ACCGCTTGCTTC-TAGTCTGTTATAATTGGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGCGTTCTATGAAAGAATAATATGAAAATACACTAAAAGCGGGAACCATGTGTTAATCGAGTGTATACGCATATTGGAAATTACCTAATGATGTGTGTAGTGTCTATGGTCTGATTAGCCAAT-AAAGAAACACAGCGGGGAGGTACCGTTTATTCATCACAGCGGTGTT-TATCATTGTTTAC-TCAAAA-GGGCACTGCAGGGGCGGTAATTAT-TTAAGCAGGGCGGTATAAGAAAAGGGTAGGGCGGCATA-AAAAAGGG-GG------CCGCCCCGCCATGCCGCTTTAGGGGAAACAtatagttccacaca
gi|7 : TGTCAACACCTTCAGTTGCTTATCAAAACAATTGCACATGGTG--CATGTGT----GT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTATAATTAGATAGCTTGAAATGAGAACCATTCTAATGGTTCCGGGTTCTATGAAAGAATAATATGAAAATGCACTAAAAGCGGGAACCATGTGATAATCAAGTGTATACACATATTGGAAATTACCTAACGACGCGTGTAGTGTCTACAGTCTGATTAGCCAAT-AAAGGAACACAGCGGGGAGGTACTGTTTATTCTTCACAGCAGTGTC-TATCATTGTTTAT-TAAAAA-GGGCACTGC-GGGGCGGTAATTATATTAAGCGTGGCAGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCAGGGCAGCCTGCCCCACCATGCCGC
gi|8 : GTCAACACCTTCAGTTGCTTATCAAAACAATCGCACATGGTG--C--GTGT----GTTTGT------GTGT----ACCGCTGGCTTCCTAGTTTGTTATAATTGTATAGCT-GAAATGAGAACCATTCTAATGGTTCCGCGGTCTATAAAAGAATAATATGAAAATGCACTAAAAGCGGGAACCATGTGTTAATCGCGTGTGTAGGCATATTGGAAATTACCTAATGACGCGTGTAGTGT-----------TTAGCCAAT-AAAGGAACACAGCGGGGAGGTACC-TTTATTCTTCACAGCGGTGTCTTATCATTGTTTAT-TGAAAA-GGGCACTGC-GGGGCGGTAATTAT-TTAAGAGTGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGTGGGGCAGCCCGCCCTGCCATGCCGCTTTAGGG
gi|9 : --GTGT----GT--GT------GTGT----ACCGCTGGCTTCCTAGTTTGTTCTAATAGTATAGCTTGAAATGAGAACCATTCTAATGGTTCAGCGGTCTATAAAAGAATAATATGATAATGCACTAAAAGCGAGAACCATGTGTTAAT-GAGTGTGTACGCATATTGGAAATTACGTAACGACGCGTGTAGTGTCTACGGTCTGATTAGCCAAT-AAAAGAACACAGTGGGGAGGTACCGTTTATTCTTCACAGCGGTGTC-TATCATTGTTTAT-TAAAAAGGGGCACTGC-GGGGCGGTAATTAT-TTAAGCATGGCGGTATAAGAAAAGGGCAGGGCGGCATAGAAAAAGGGCGGGGCGGCCCGCCCTGCCATGCTGCTTTAGGGGAAACAC