lowQualScore : 11 1 1111 11 33333333333 3333333333333333333333 1111 1111 11111 111 111111111
lowQualScore : 4 3 3 3 44 3 8 3 1 66 3 9999 3 66 44 555 11111111111 5 2222222222222222222222 3 2 0000 8888 2 1 3 5 88888 555 33333 44 6 44 44 44 44 444 555 3 3 44 1 55 6 3 4 444444444 3 5
lowQualScore : . . . . .. . . . . .. . .... . .. .. ... ........... . ...................... . . .... .... . . . . ..... ... ..... .. . .. .. .. .. ... ... . . .. . .. . . . ......... . .
lowQualScore : 4 3 3 3 66 1 8 0 0 33 3 7777 6 66 66 888 33333333333 0 9999999999999999999999 3 3 4444 7777 9 7 1 5 66666 444 11111 22 2 22 22 22 22 555 444 1 3 66 8 00 7 3 6 111111111 3 0
consensus : AGGGATTTGCCAATGAAGTACTCTTTTC-AG-G-ACCTATT-TTGTGTAAAAGGGGTGGTTCAGATATGCTGT-TTTA--GTGGAT-TC-ATATA--TCAACTTTAACT---TAAAGTTC-----GACTCCTG----------------------AC-CCCC----TAAATTT--AAAAA-AATG-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTT-----G--AG-AAAA--AA--T--CCTCT--TCN--TTT---T-TCAAGATAT-GACAC--CTGCAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATA--------AATATTTAT-TACAAAATATACACANTGAATAACCAAAACTA
Reference ( gi|5 ) : AGGGATTTGCCAATAAAGTACTCTTTTC-AG-G-ACGTATT-TTGTATAAAAGGGGTTGTTCAGATATCTTGT-TTAA--GTGGAT-TA-ATATA--TCAACTTTAACT---TACAGTTT-----GATTCCTG----------------------AC-CCCC----TAAATTT--AAAAA-AATG-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTT-----G--AG-AAAA--AA--T--CCTCT--TCA--TTT---T-TCAAGATAT-GACAC--CTACAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATA--------GATATTTAT-TACAAAATATACACAATGAATAACCAAAACTA
gi|2 : AGGGATTTGCAAATGAAGTACTCTTTTC-AG-G-ACTTATT-TTGTGTAAAAGGGGTGGTTAAGATATCCTGT-TTTA--GTGAAT-TC-ATATA--TCAACTTTAACT---TAAAG-TT-----GACTCCTG----------------------AC-CCCC----TAAATTTG-AAAAA-AATG-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTT-----G--AG-AAAA--AA--T--CGTCT--TCC--TTT---T-TCAAGATAT-GACAC--CAACAAAATAGT--AAAA-ATAAAAC-C--CATCTAGTTTCAGTTATA--------AATAGTTAT-TACAAAACATACACAATGAATAAACAAAACT
gi|4 : aacattttagttAGGGATTTGCCAATGAAGTACTCTTTTC-AA-G-ACTTATT-TTGTGTAAAAGGGGTGGTTCAGATATCCTGT-TTTA--GTGGAT-TC-ATATA--TCAACTTTAACT---TAAAG-TT-----GACTCCTG----------------------AC-CCTC----TAAATTT---GAAA-AATT-GCAAGGATTAATCTTCTCA----CAAGA---CATGTTT-----GAAAA-AAAA--AA--T--CCTCT--TCT--TTT---T-TCAAGATAT-GACAC--CTGCAACATAGT--AAAACA-CCAACACAACATCTGGTTTCAGTTATG--------AATATTTAT-TACAAAA---ATATAATGAATAACCAAAACTA
gi|8 : tttaattAGGGATTTGCCAATAGAGTACTTTTTTC-AG-G-ACTTATT-TTGTGTAAAAGGGTTGGTTCCGATATCCTGT-TTTA--GTGGAT-TT-ATATA--TCAACTTTAACT---TAAAG-TT-----GACTCCTG----------------------AC-CCCC----TAAATTTGAAAAAA-AATG-GCAATGATTAATCCTCTCT----CAAAA---CATGT---------------------------------------TT---T-TCAAGATAT-GACAC--CTACAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATA--------GATATTTAT-TACAAAATATACACAATGAATAACCAAAACTA
gi|3 : attAGGGATTTGCCAATGAAGTACTCTTTTC-AG-G-ACTTATT-TTGTGTAAAAGGGGTGGTTCAAATATCCTGT-TTA---GTGGAT-TC-ATATA--TCAATTTTAAAT---TAAAGTT------GACTCTAA----------------------AC-CCTA----TAAGTTTG-AAAAA-AATG-GCAAGGATTTATCCTCTTA----AAAAA---CATGTTT-----G--AG-AAAA--AA--T--CTTCT--TTT--TTT---TATTAAGATAT-GACAC--CTACAAAACAGT--ATAA-A-AAAACACAACATCTAGTTTCAGTTATT--------GATATTTAT-TACAAAATATACACAATGAATAACCAAAACTAa
gi|9 : tttaattAGGGATTTGCCAATGAAGTACTCTTTTCCAG-G-ATCTATT-TTGTGTAAAAGGGGTGGTTCAGATATGCTAT-TTTA--GTGAAT-TC-ATATA--TCAACTTAAACT---TAAAGCT------GACTCCTG----------------------AC-CCCCC---TAAATTTG-AAAAA-AATG-GCAAGGATT---CATCGCA----CAAAA---CATGTTT-----G--AG-AATT--AA--T--TCTCT--TCT--TTT---T-TCAAGATAT-GACAC--CTGCAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATA--------AATATTTAT-TACAAA
gi|1 : tttaataAGAAATTGGTCAATGAAAAACTCTTTTC-GG-G-ACCGATT-TTGTGTAAAAGGAGAGGTTCAGCTGTGCTGT-TTAT--ACGGATATATATATAACTCAACTTTAACTACTTAAAGTT------GACTCCTGCAATACACCTACCCCCCTCCTCAC-CCCCGCCTTCAATTA--GAAAACAATC-ACAAGGATTGATCTTCTC-----TATAA---CGTGTTT-----G--AG-AAAA--AAAAT--CCTCTACTCA--TTT------CAA-ATAT-GACAC--CTGCAAATTAGC--AAAATA-AAAAAACC-CATCTAGCTTCAGTTATC--------AACATT-ATCTACAAAATATACTCATTGTATAGACAAAt
gi|15 : attttaaatAGGGATTTGCCGATGAAGTACTCTTTT--AG-G-ACATATA-TTGTGCAAAAGGGGTGGTTCAGATGTGTCGT-TT
gi|13 : AAGGATTTGCCAATTAAGTACTGTTTTT-AG-GTAC-CGTT-TTGT
gi|16 : gaatGGATTTGCCAATATAGTATTC-TTTC-AG-G-ACCGATT-TTGTGCAAAAAGGggattcatatatcaactgtacattaaagttgactcctgaacccactaaattagaaaaaaggaag
gi|6 : ATTTGCCAATGAAGTACTCTTTT--AG-G-ACCTATA-TTGTGTAAAAGGTGTGGTTCAGATGTGTCGT-TTTG--GGGGGT-TC-CTATA--TTTACTTTAACT---TA-AATAC-----GAGTCCAG----------------------CC-CCAC----TAAAATA--GAAAA-AACC-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTT-----G--AG-AAAA--AA--T--CCTCT--TCT--TTT---T-TCAAGATAT-GACAC--CAGCAAAATAAT--AAAA-A-A-AACATAACATCTAGTTTCAGTTATA--------AATATTTGT-TACAAAATATACACATTGAATAACCAAAACTtggtt
gi|11 : aGTCAATGCAGTACTATTTTC-AATG-CCG-ATC-TAGTGCAAAGTATGTGGTTCATAGTTGTCGT-TTTG--ATGGAG-TC-ATATA--TTAATTTGAACA---TATAGTTG-----AATTC-TG----------------------AC-AC-------AAATTT--AAATA-CATG-TAAAAGAC--ATTTTCTAAAAACTAAAAAGTCATGTTT-----G--AG-AAAA--AA--A--ACACA--ACA--TATGGCT-TC-AGATATAAACATTACTACAAAGTA
gi|7 : ATGAAGTAGTCTTTTC-AG-G-ACCTATT-TTGTGTAAAAGGGATGGTTCAGATATGCTAT-TTTA--GTCGAT-TC-ATATA--TCAACTTAATCT---TAAAG-TT-----GACTCCTG----------------------AC-CCCC----CTTCTTTTGAAAAA-AATG-GAAAAGATTAATCCTCTCA----CAAAA---CATGTTT-----G--AGAAAAA--AA--T--CCTCT--TCT--TTT---T-TCAAGATAT-GGCA---CTGCAAAATGGTAAAAAA-A-AAAACACAACATCTAGTTTCAGTTATC--------AATATTTAT-AACAAAACATGCACAATGAATAACCAAAACTAcatacattgagtaacaaaa
gi|10 : ATTATTGT-TAAAATGGATGGTTCAGAT---TTGCAGTAATCATGGAG-GC-ATATA--TATATTTTAACA---AAAAA---AAAAAGATTCCTT----------------------GC-CCCC-------AC----AGCAA-AA-G-GCAATGATTAATCCTCTCT----CAAAT---CATGTAT-----A--AG-ACAA--AG--TTATCTTT--TC---TCC---T-TCACGATAT-GAC-------TAAAGTGGT---AGA-A-ACAAGACAACATGCAACCACAGTTATACATAAAATGATACTTTG-TACAAGTTATAT----TTAATAACAAAAAATAa
gi|13 : gGTT-TTTAGGTACCGT-T-TT----GTGGAT-TC-ATATA--TCAACTGTACAT---TAAAG-TT-----GACTCCTGA---------------------AC-CCAC----TAAATTA--GAAAA-AAtg
gi|12 : gaataaggatttgccaattaagtactATA--TCTACTTTAACT---TA-AATTC-----GCGTCCTG----------------------ACACCTC----TAAATT----AGAA-AATACGCAAGGATTAATCCTCTCA----CAAAA---CATGTTT-----G--AGAAAAA--AA--T--CCTCT--TCC--TTT---T-TCAAGATAT-GACAC--ATGCAAAGTAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATA--------AATATTAAT-TACAAAATATACACATTGACAAATCAAAACTAggaag
gi|7 : ttcaaTT--GAAAA-AA-G-AAGAGGATTT-TTTTCTCA-------AA---CATGTTTTGT--G--AG-AGGATTAA--T--CTTTT--CCATTTTT---T-TCAAAAaa
gi|3 : atgaagtagtcttttcaggacctattttgtgtaaaagggatggttcagatatgctattttagtcgattcatatatcaacttaatcttaaagttgactcctgaccccccttcT--AAAAA-AAAG----AAGATT--TTTTCTCA-------AA---CATGTTTTTTAAG--AG-GATA--AA--T--CCTTG--CCA--TTT---T-Tgatatggcactgcaaaatggtaaaaaaaaaaacacaacatctagtttcagttatcaatatttataacaaaacatgcacaatgaataaccaaaactaa
gi|14 : tttaattagggatttgccaatgaagtactcttttcaggacttattttgtgtaaaaggggtggttcaaatatcctgtttagtggattcatatatcaattttaaattaaagttgactctaaaccctataagtttgaaAAAATAT-GACAT--CTGCAAAATGGT--AAAA-A-ACAACATAACATCAGGCTTCAAATATA--------ATCATTTAT-TACAAACTATACACATTGAATAACCAAACCTAttaagatatgacacctacaaaacagtataaaaaaacacaacatctagtttcagttattgatatttattacaaaatatacacaatgaataaccaaaacta
gi|11 : AAA-A-AAAACACAACATATGGCTTCAGATATA--------AACA-TTAC-TACAAAGTACATACATTGAGTAACAAAA
Alignments
lowQualScore : 44444444444444444444444444 2222 1111111111
lowQualScore : 3 3 0 2 1 3 6666 555 00000000000000000000000000 3 3 1 9999 0000 3 3 0 7777 555 44 6 44 3 2 3 44 6 3 3 2222222222 3 1
lowQualScore : . . . . . . .... ... .......................... . . . .... .... . . . .... ... .. . .. . . . .. . . . .......... . .
lowQualScore : 1 1 3 9 5 1 5555 444 33333333333333333333333333 1 1 4 6666 4444 1 3 5 1111 888 66 7 66 6 3 6 66 2 1 5 7777777777 1 0
consensus : AGGGATTTGCCAATGAAGTACTCTTTTC-AGG-ACCTATT-TTGTGTAAAAGGGGTGGTTCAGATATGCCGTTT-TAGTGGATTCATATAT----CAACTTTAACT---TAAAGTT-----------GA-------------CTCCTG-AC-CCCC----TAAATTT--AAAAA-AATG-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAA--TCCTC-TTCTTTTT-TCAAGATATGACACCTGCAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAAATA---------TTTAT-TACAAAATATACACANTGAATAACCAAAACTA
Reference ( family-5114 ) : AGGGATTTGCCAATGAAGTACTCTTTTC-AGG-ACCTATT-TTGTGTAAAAGGGGTGGTTCAGATATGCTGTTT-TAGTGGATTCATATAT----CAACTTTAACT---TAAAGTT--------C--GA-------------CTCCTG-AC-CCCC----TAAATTT--AAAAA-AATG-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAA--TCCTC-TTCNTTTT-TCAAGATATGACACCTGCAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAAATA---------TTTAT-TACAAAATATACACANTGAATAACCAAAACTA
gi|1 : AGAAATTGGTCAATGAAAAACTCTTTTC-GGG-ACCGATT-TTGTGTAAAAGGAGAGGTTCAGCTGTGCTGTTTATA-CGGATATATATATAACTCAACTTTAACTACTTAAAGTTGACTCCTGC--AATACACCTACCCCCCTCCTC-AC-CCCCGCCTTCAATTA--GAAAACAATC-ACAAGGATTGATCTTCTC-----TATAA---CGTGTTTG--AG-AAAAAAAATCCTC-TACTCATT-TCAA-ATATGACACCTGCAAATTAGC--AAAATA-AAAAAAC-CCATCTAGCTTCAGTTATCAACA----------TTATCTACAAAATATACTCATTGTATAGACAAA
gi|10 : attttaaatATTATTGT-TAAAATGGATGGTTCAGATTTGCAGTAA-TCATGGAGGCATATAT----ATATTTTAACA---AAAAAAA--------AAAGA-------------TTCCTT-GC-CCCC-------AC----AGCAA-AA-G-GCAATGATTAATCCTCTCT----CAAAT---CATGTATA--AG-ACAAAG--TTATCTTTTCTCCT-TCACGATATGAC-----TAAAGTGGT---AGA-A-ACAAGACAACATGCAACCACAGTTATACATAAAATGATACTTTG--TACAAGTTAT----ATTTAATAACAAAAAATA
gi|11 : gGTCAATGCAGTACTATTTTC-AAT-GCCGATC-TAGTGCAAAGTATGTGGTTCATAGTTGTCGTTT-TGATGGAGTCATATAT----TAATTTGAACA---TATAGTT-----------GA-------------ATTCTG-AC-AC-------AAATTT--AAATA-CATG-TAAAAGAC--ATTTTCTAAAAACTAAAAAGTCATGTTTG--AG-AAAAAA--tg
gi|11 : AAA-A-AAAACACAACATATGGCTTCAGATATAAACA----------TTAC-TACAAAGTACATACATTGAGTAACAAAAaacacaacatatggcttcagatataaacattactacaaagtacatacattgagtaacaaaa
gi|12 : gtcaatgcagtactattttcaatgccgatctagtgcaaagtatgtggttcatagttgtcgttttgatggagtcatatattaatttgaacatatagttgaattctgacacaaatttaaatacatgtaaaagacattttctaaaaactaaaaagtcatgtttgagTTCAAATAT----CTACTTTAACT---TAAA-TT--------C--GC-------------GTCCTG-ACACCTC----TAAATT----AGAA-AATACGCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AGAAAAAAA--TCCTC-TTCCTTTT-TCAAGATATGACACATGCAAAGTAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAAATA---------TTAAT-TACAAAATATACACATTGACAAATCAAAACTA
gi|13 : AAGGATTTGCCAATTAAGTACTGTTTTT-AGGTACC-GTT-TTGTGaa
gi|13 : gaatTTTAGGTA--CCGTTT-T-GTGGATTCATATAT----CAACTGTACAT---TAAAGTT-----------GA-------------CTCCTGAAC-CCAC----TAAATTA--GAAAA-AAgattcatatatcaactgtacattaaagttgactcctgaacccactaaattagaaaaaaggaag
gi|14 : gaataaggatttgccaattaagtactgttAAAATATGACATCTGCAAAATGGT--AAAA-A-ACAACATAACATCAGGCTTCAAATATAATCA---------TTTAT-TACAAACTATACACATTGAATAACCAAACCTAggaag
gi|15 : AGGGATTTGCCGATGAAGTACTCTTTT--AGG-ACATATA-TTGTGCAAAAGGGGTGGTTCAGATGTGTCGTTT-
gi|16 : GGATTTGCCAATATAGTATTCTTT-C-AGG-ACCGATT-TTGTGCAAAA-AGGTGGTT
gi|2 : AGGGATTTGCAAATGAAGTACTCTTTTC-AGG-ACTTATT-TTGTGTAAAAGGGGTGGTTAAGATATCCTGTTT-TAGTGAATTCATATAT----CAACTTTAACT---TAAAGTT-----------GA-------------CTCCTG-AC-CCCC----TAAATTTG-AAAAA-AATG-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAA--TCGTC-TTCCTTTT-TCAAGATATGACACCAACAAAATAGT--AAAA-ATAAAAC-C--CATCTAGTTTCAGTTATAAATA---------GTTAT-TACAAAACATACACAATGAATAAACAAAACT
gi|3 : aacattttagttAGGGATTTGCCAATGAAGTACTCTTTTC-AGG-ACTTATT-TTGTGTAAAAGGGGTGGTTCAAATATCCTGTTT--AGTGGATTCATATAT----CAATTTTAAAT---TAAAGTT-----------GA-------------CTCTAA-AC-CCTA----TAAGTTTG-AAAAA-AATG-GCAAGGATTTATCCTCTTA----AAAAA---CATGTTTG--AG-AAAAAA--TCTTC-TTTTTTTTATTAAGATATGACACCTACAAAACAGT--ATAA-A-AAAACACAACATCTAGTTTCAGTTATTGATA---------TTTAT-TACAAAATATACACAATGAATAACCAAAACTA
gi|4 : tttaattAGGGATTTGCCAATGAAGTACTCTTTTC-AAG-ACTTATT-TTGTGTAAAAGGGGTGGTTCAGATATCCTGTTT-TAGTGGATTCATATAT----CAACTTTAACT---TAAAGTT-----------GA-------------CTCCTG-AC-CCTC----TAAATTT---GAAA-AATT-GCAAGGATTAATCTTCTCA----CAAGA---CATGTTTGAAAA-AAAAAA--TCCTC-TTCTTTTT-TCAAGATATGACACCTGCAACATAGT--AAAACA-CCAACACAACATCTGGTTTCAGTTATGAATA---------TTTAT-TACAAAA---ATATAATGAATAACCAAAACTA
gi|5 : tttaattAGGGATTTGCCAATAAAGTACTCTTTTC-AGG-ACGTATT-TTGTATAAAAGGGGTTGTTCAGATATCTTGTTT-AAGTGGATTAATATAT----CAACTTTAACT---TACAGTT--------T--GA-------------TTCCTG-AC-CCCC----TAAATTT--AAAAA-AATG-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAA--TCCTC-TTCATTTT-TCAAGATATGACACCTACAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAGATA---------TTTAT-TACAAAATATACACAATGAATAACCAAAACTA
gi|6 : ATTTGCCAATGAAGTACTCTTTT--AGG-ACCTATA-TTGTGTAAAAGGTGTGGTTCAGATGTGTCGTTT-TGGGGGGTTCCTATAT----TTACTTTAACT---TAAA-TA--------C--GA-------------GTCCAG-CC-CCAC----TAAAATA--GAAAA-AACC-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAA--TCCTC-TTCTTTTT-TCAAGATATGACACCAGCAAAATAAT--AAAA-A-A-AACATAACATCTAGTTTCAGTTATAAATA---------TTTGT-TACAAAATATACACATTGAATAACCAAAACT
gi|7 : aATGAAGTAGTCTTTTC-AGG-ACCTATT-TTGTGTAAAAGGGATGGTTCAGATATGCTATTT-TAGTCGATTCATATAT----CAACTTAATCT---TAAAGTT-----------GA-------------CTCCTG-AC-CCCC----CTTCTTTTGAAAAA-AATG-GAAAAGATTAATCCTCTCA----CAAAA---CATGTTTG--AGAAAAAAA--TCCTC-TTCTTTTT-TCAAGATATGGCA-CTGCAAAATGGTAAAAAA-A-AAAACACAACATCTAGTTTCAGTTATCAATA---------TTTAT-AACAAAACATGCACAATGAATAACCAAAACTA
gi|8 : AGGGATTTGCCAATAGAGTACTTTTTTC-AGG-ACTTATT-TTGTGTAAAAGGGTTGGTTCCGATATCCTGTTT-TAGTGGATTTATATAT----CAACTTTAACT---TAAAGTT-----------GA-------------CTCCTG-AC-CCCC----TAAATTTGAAAAAA-AATG-GCAATGATTAATCCTCTCT----CAAAA---CATG---------------------------TTTT-TCAAGATATGACACCTACAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAGATA---------TTTAT-TACAAAATATACACAATGAATAACCAAAACTAa
gi|9 : attAGGGATTTGCCAATGAAGTACTCTTTTCCAGG-ATCTATT-TTGTGTAAAAGGGGTGGTTCAGATATGCTATTT-TAGTGAATTCATATAT----CAACTTAAACT---TAAAGCT-----------GA-------------CTCCTG-AC-CCCCC---TAAATTTG-AAAAA-AATG-GCAAGGATT---CATCGCA----CAAAA---CATGTTTG--AG-AATTAA--TTCTC-TTCTTTTT-TCAAGATATGACACCTGCAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAAATA---------TTTAT-TACAAAa
Alignments
lowQualScore : 2222222222222222222222 2222 1111111111
lowQualScore : 3 3 0 2 1 1 3 6666 555 888 7777777777777777777777 3 3 1 9999 0000 3 3 0 7777 555 44 3 77 3 3 44 6 3 3 2222222222 3 1
lowQualScore : . . . . . . . .... ... ... ...................... . . . .... .... . . . .... ... .. . .. . . .. . . . .......... . .
lowQualScore : 1 1 3 9 5 8 1 5555 444 555 3333333333333333333333 1 1 4 6666 4444 1 3 5 1111 888 66 3 99 6 6 66 2 1 5 7777777777 1 0
consensus : AGGGATTTGCCAATGAAGTACTCTTTTC-AGG-ACCTATT-TTGTGTAAAAGGGGTGGTTCAGATATGCCGTTT-TAGTGGATTCATATAT----CAACTTTAACT---TAAAGTT---GACT----------------------CCTG-AC-CCCC----TAAATTT--AAAAA-AATG-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAA--TCCTCTTCT-TTTT-TCAAGATATGACACCTGCAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAAATA---------TTTAT-TACAAAATATACACANTGAATAACCAAAACTA
Reference ( family-5114 ) : AGGGATTTGCCAATGAAGTACTCTTTTC-AGG-ACCTATT-TTGTGTAAAAGGGGTGGTTCAGATATGCCGTTT-TAGTGGATTCATATAT----CAACTTTAACT---TAAAGTT---GACT----------------------CCTG-AC-CCCC----TAAATTT--AAAAA-AATG-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAA--TCCTCTTCT-TTTT-TCAAGATATGACACCTGCAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAAATA---------TTTAT-TACAAAATATACACANTGAATAACCAAAACTA
gi|1 : AGAAATTGGTCAATGAAAAACTCTTTTC-GGG-ACCGATT-TTGTGTAAAAGGAGAGGTTCAGCTGTGCTGTTTATA-CGGATATATATATAACTCAACTTTAACTACTTAAAGTT---GACTCCTGCAATACACCTACCCCCCTCCTC-AC-CCCCGCCTTCAATTA--GAAAACAATC-ACAAGGATTGATCTTCTC-----TATAA---CGTGTTTG--AG-AAAAAAAATCCTCTACT-CATT-TCAA-ATATGACACCTGCAAATTAGC--AAAATA-AAAAAAC-CCATCTAGCTTCAGTTATCAACA----------TTATCTACAAAATATACTCATTGTATAGACAAA
gi|10 : attttaaatATTATTGT-TAAAATGGATGGTTCAGATTTGCAGTAA-TCATGGAGGCATATAT----ATATTTTAACA---AAAAAAAAAAGATT----------------------CCTT-GC-CCCC-------AC----AGCAA-AA-G-GCAATGATTAATCCTCTCT----CAAAT---CATGTATA--AG-ACAAAG--TTATCTTTTCTCCT-TCACGATATGAC-----TAAAGTGGT---AGA-A-ACAAGACAACATGCAACCACAGTTATACATAAAATGATACTTTG--TACAAGTTAT----ATTTAATAACAAAAAATA
gi|11 : gGTCAATGCAGTACTATTTTC-AAT-GCCGATC-TAGTGCAAAGTATGTGGTTCATAGTTGTCGTTT-TGATGGAGTCATATAT----TAATTTGAACA---TATAGTT---GAAT----------------------TCTG-AC-AC-------AAATTT--AAATA-CATG-TAAAAGAC--ATTTTCTAAAAACTAAAAAGTCATGTTTG--AG-AAAAAA--tg
gi|11 : AAA-A-AAAACACAACATATGGCTTCAGATATAAACA----------TTAC-TACAAAGTACATACATTGAGTAACAAAAaacacaacatatggcttcagatataaacattactacaaagtacatacattgagtaacaaaa
gi|12 : gtcaatgcagtactattttcaatgccgatctagtgcaaagtatgtggttcatagttgtcgttttgatggagtcatatattaatttgaacatatagttgaattctgacacaaatttaaatacatgtaaaagacattttctaaaaactaaaaagtcatgtttgagTTCAAATAT----CTACTTTAACT---TAAATTC---GCGT----------------------CCTG-ACACCTC----TAAATT----AGAA-AATACGCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAAA-TCCTCTTCC-TTTT-TCAAGATATGACACATGCAAAGTAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAAATA---------TTAAT-TACAAAATATACACATTGACAAATCAAAACTA
gi|13 : AAGGATTTGCCAATTAAGTACTGTTTTT-AGGTACC-GTT-TTGTGaa
gi|13 : gaatTTTAGGTA--CCGTTT-T-GTGGATTCATATAT----CAACTGTACAT---TAAAGTT---GACT----------------------CCTGAAC-CCAC----TAAATTA--GAAAA-AAgattcatatatcaactgtacattaaagttgactcctgaacccactaaattagaaaaaaggaag
gi|14 : gaataaggatttgccaattaagtactgttAAAATATGACATCTGCAAAATGGT--AAAA-A-ACAACATAACATCAGGCTTCAAATATAATCA---------TTTAT-TACAAACTATACACATTGAATAACCAAACCTAggaag
gi|15 : AGGGATTTGCCGATGAAGTACTCTTTT--AGG-ACATATA-TTGTGCAAAAGGGGTGGTTCAGATGTGTCGTTT-
gi|16 : GGATTTGCCAATATAGTATTCTTT-C-AGG-ACCGATT-TTGTGCAAAA-AGGTGGTT
gi|2 : AGGGATTTGCAAATGAAGTACTCTTTTC-AGG-ACTTATT-TTGTGTAAAAGGGGTGGTTAAGATATCCTGTTT-TAGTGAATTCATATAT----CAACTTTAACT---TAAAGTT---GACT----------------------CCTG-AC-CCCC----TAAATTTG-AAAAA-AATG-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAA--TCGTCTTCC-TTTT-TCAAGATATGACACCAACAAAATAGT--AAAA-ATAAAAC-C--CATCTAGTTTCAGTTATAAATA---------GTTAT-TACAAAACATACACAATGAATAAACAAAACT
gi|3 : aacattttagttAGGGATTTGCCAATGAAGTACTCTTTTC-AGG-ACTTATT-TTGTGTAAAAGGGGTGGTTCAAATATCCTGTTT--AGTGGATTCATATAT----CAATTTTAAAT---TAAAGTT---GACT----------------------CTAA-AC-CCTA----TAAGTTTG-AAAAA-AATG-GCAAGGATTTATCCTCTTA----AAAAA---CATGTTTG--AG-AAAAAA--TCTTCTTTT-TTTTATTAAGATATGACACCTACAAAACAGT--ATAA-A-AAAACACAACATCTAGTTTCAGTTATTGATA---------TTTAT-TACAAAATATACACAATGAATAACCAAAACTA
gi|4 : tttaattAGGGATTTGCCAATGAAGTACTCTTTTC-AAG-ACTTATT-TTGTGTAAAAGGGGTGGTTCAGATATCCTGTTT-TAGTGGATTCATATAT----CAACTTTAACT---TAAAGTT---GACT----------------------CCTG-AC-CCTC----TAAATTT---GAAA-AATT-GCAAGGATTAATCTTCTCA----CAAGA---CATGTTTGAAAA-AAAAAA--TCCTCTTCT-TTTT-TCAAGATATGACACCTGCAACATAGT--AAAACA-CCAACACAACATCTGGTTTCAGTTATGAATA---------TTTAT-TACAAAA---ATATAATGAATAACCAAAACTA
gi|5 : tttaattAGGGATTTGCCAATAAAGTACTCTTTTC-AGG-ACGTATT-TTGTATAAAAGGGGTTGTTCAGATATCTTGTTT-AAGTGGATTAATATAT----CAACTTTAACT---TACAGTTT--GATT----------------------CCTG-AC-CCCC----TAAATTT--AAAAA-AATG-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAA--TCCTCTTCA-TTTT-TCAAGATATGACACCTACAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAGATA---------TTTAT-TACAAAATATACACAATGAATAACCAAAACTA
gi|6 : ATTTGCCAATGAAGTACTCTTTT--AGG-ACCTATA-TTGTGTAAAAGGTGTGGTTCAGATGTGTCGTTT-TGGGGGGTTCCTATAT----TTACTTTAACT---TAAATAC---GAGT----------------------CCAG-CC-CCAC----TAAAATA--GAAAA-AACC-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAA--TCCTCTTCT-TTTT-TCAAGATATGACACCAGCAAAATAAT--AAAA-A-A-AACATAACATCTAGTTTCAGTTATAAATA---------TTTGT-TACAAAATATACACATTGAATAACCAAAACT
gi|7 : aATGAAGTAGTCTTTTC-AGG-ACCTATT-TTGTGTAAAAGGGATGGTTCAGATATGCTATTT-TAGTCGATTCATATAT----CAACTTAATCT---TAAAGTT---GACT----------------------CCTG-AC-CCCC----CTTCTTTTGAAAAA-AATG-GAAAAGATTAATCCTCTCA----CAAAA---CATGTTTG--AGAAAAAAA--TCCTCTTCT-TTTT-TCAAGATATGGCA-CTGCAAAATGGTAAAAAA-A-AAAACACAACATCTAGTTTCAGTTATCAATA---------TTTAT-AACAAAACATGCACAATGAATAACCAAAACTA
gi|8 : AGGGATTTGCCAATAGAGTACTTTTTTC-AGG-ACTTATT-TTGTGTAAAAGGGTTGGTTCCGATATCCTGTTT-TAGTGGATTTATATAT----CAACTTTAACT---TAAAGTT---GACT----------------------CCTG-AC-CCCC----TAAATTTGAAAAAA-AATG-GCAATGATTAATCCTCTCT----CAAAA---CATG---------------------------TTTT-TCAAGATATGACACCTACAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAGATA---------TTTAT-TACAAAATATACACAATGAATAACCAAAACTAa
gi|9 : attAGGGATTTGCCAATGAAGTACTCTTTTCCAGG-ATCTATT-TTGTGTAAAAGGGGTGGTTCAGATATGCTATTT-TAGTGAATTCATATAT----CAACTTAAACT---TAAAGCT---GACT----------------------CCTG-AC-CCCCC---TAAATTTG-AAAAA-AATG-GCAAGGATT---CATCGCA----CAAAA---CATGTTTG--AG-AATTAA--TTCTCTTCT-TTTT-TCAAGATATGACACCTGCAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAAATA---------TTTAT-TACAAAa
Alignments
lowQualScore : 2222222222222222222222 2222 1111111111
lowQualScore : 3 3 0 2 1 1 3 6666 555 888 7777777777777777777777 3 3 1 9999 0000 3 3 0 7777 555 44 3 77 3 3 44 6 3 3 2222222222 3 1
lowQualScore : . . . . . . . .... ... ... ...................... . . . .... .... . . . .... ... .. . .. . . .. . . . .......... . .
lowQualScore : 1 1 3 9 5 8 1 5555 444 555 3333333333333333333333 1 1 4 6666 4444 1 3 5 1111 888 66 3 99 6 6 66 2 1 5 7777777777 1 0
consensus : AGGGATTTGCCAATGAAGTACTCTTTTC-AGG-ACCTATT-TTGTGTAAAAGGGGTGGTTCAGATATGCCGTTT-TAGTGGATTCATATAT----CAACTTTAACT---TAAAGTT---GACT----------------------CCTG-AC-CCCC----TAAATTT--AAAAA-AATG-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAA--TCCTCTTCT-TTTT-TCAAGATATGACACCTGCAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAAATA---------TTTAT-TACAAAATATACACANTGAATAACCAAAACTA
Reference ( family-5114 ) : AGGGATTTGCCAATGAAGTACTCTTTTC-AGG-ACCTATT-TTGTGTAAAAGGGGTGGTTCAGATATGCCGTTT-TAGTGGATTCATATAT----CAACTTTAACT---TAAAGTT---GACT----------------------CCTG-AC-CCCC----TAAATTT--AAAAA-AATG-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAA--TCCTCTTCT-TTTT-TCAAGATATGACACCTGCAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAAATA---------TTTAT-TACAAAATATACACANTGAATAACCAAAACTA
gi|1 : AGAAATTGGTCAATGAAAAACTCTTTTC-GGG-ACCGATT-TTGTGTAAAAGGAGAGGTTCAGCTGTGCTGTTTATA-CGGATATATATATAACTCAACTTTAACTACTTAAAGTT---GACTCCTGCAATACACCTACCCCCCTCCTC-AC-CCCCGCCTTCAATTA--GAAAACAATC-ACAAGGATTGATCTTCTC-----TATAA---CGTGTTTG--AG-AAAAAAAATCCTCTACT-CATT-TCAA-ATATGACACCTGCAAATTAGC--AAAATA-AAAAAAC-CCATCTAGCTTCAGTTATCAACA----------TTATCTACAAAATATACTCATTGTATAGACAAA
gi|10 : attttaaatATTATTGT-TAAAATGGATGGTTCAGATTTGCAGTAA-TCATGGAGGCATATAT----ATATTTTAACA---AAAAAAAAAAGATT----------------------CCTT-GC-CCCC-------AC----AGCAA-AA-G-GCAATGATTAATCCTCTCT----CAAAT---CATGTATA--AG-ACAAAG--TTATCTTTTCTCCT-TCACGATATGAC-----TAAAGTGGT---AGA-A-ACAAGACAACATGCAACCACAGTTATACATAAAATGATACTTTG--TACAAGTTAT----ATTTAATAACAAAAAATA
gi|11 : gGTCAATGCAGTACTATTTTC-AAT-GCCGATC-TAGTGCAAAGTATGTGGTTCATAGTTGTCGTTT-TGATGGAGTCATATAT----TAATTTGAACA---TATAGTT---GAAT----------------------TCTG-AC-AC-------AAATTT--AAATA-CATG-TAAAAGAC--ATTTTCTAAAAACTAAAAAGTCATGTTTG--AG-AAAAAA--tg
gi|11 : AAA-A-AAAACACAACATATGGCTTCAGATATAAACA----------TTAC-TACAAAGTACATACATTGAGTAACAAAAaacacaacatatggcttcagatataaacattactacaaagtacatacattgagtaacaaaa
gi|12 : gtcaatgcagtactattttcaatgccgatctagtgcaaagtatgtggttcatagttgtcgttttgatggagtcatatattaatttgaacatatagttgaattctgacacaaatttaaatacatgtaaaagacattttctaaaaactaaaaagtcatgtttgagTTCAAATAT----CTACTTTAACT---TAAATTC---GCGT----------------------CCTG-ACACCTC----TAAATT----AGAA-AATACGCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAAA-TCCTCTTCC-TTTT-TCAAGATATGACACATGCAAAGTAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAAATA---------TTAAT-TACAAAATATACACATTGACAAATCAAAACTA
gi|13 : AAGGATTTGCCAATTAAGTACTGTTTTT-AGGTACC-GTT-TTGTGaa
gi|13 : gaatTTTAGGTA--CCGTTT-T-GTGGATTCATATAT----CAACTGTACAT---TAAAGTT---GACT----------------------CCTGAAC-CCAC----TAAATTA--GAAAA-AAgattcatatatcaactgtacattaaagttgactcctgaacccactaaattagaaaaaaggaag
gi|14 : gaataaggatttgccaattaagtactgttAAAATATGACATCTGCAAAATGGT--AAAA-A-ACAACATAACATCAGGCTTCAAATATAATCA---------TTTAT-TACAAACTATACACATTGAATAACCAAACCTAggaag
gi|15 : AGGGATTTGCCGATGAAGTACTCTTTT--AGG-ACATATA-TTGTGCAAAAGGGGTGGTTCAGATGTGTCGTTT-
gi|16 : GGATTTGCCAATATAGTATTCTTT-C-AGG-ACCGATT-TTGTGCAAAA-AGGTGGTT
gi|2 : AGGGATTTGCAAATGAAGTACTCTTTTC-AGG-ACTTATT-TTGTGTAAAAGGGGTGGTTAAGATATCCTGTTT-TAGTGAATTCATATAT----CAACTTTAACT---TAAAGTT---GACT----------------------CCTG-AC-CCCC----TAAATTTG-AAAAA-AATG-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAA--TCGTCTTCC-TTTT-TCAAGATATGACACCAACAAAATAGT--AAAA-ATAAAAC-C--CATCTAGTTTCAGTTATAAATA---------GTTAT-TACAAAACATACACAATGAATAAACAAAACT
gi|3 : aacattttagttAGGGATTTGCCAATGAAGTACTCTTTTC-AGG-ACTTATT-TTGTGTAAAAGGGGTGGTTCAAATATCCTGTTT--AGTGGATTCATATAT----CAATTTTAAAT---TAAAGTT---GACT----------------------CTAA-AC-CCTA----TAAGTTTG-AAAAA-AATG-GCAAGGATTTATCCTCTTA----AAAAA---CATGTTTG--AG-AAAAAA--TCTTCTTTT-TTTTATTAAGATATGACACCTACAAAACAGT--ATAA-A-AAAACACAACATCTAGTTTCAGTTATTGATA---------TTTAT-TACAAAATATACACAATGAATAACCAAAACTA
gi|4 : tttaattAGGGATTTGCCAATGAAGTACTCTTTTC-AAG-ACTTATT-TTGTGTAAAAGGGGTGGTTCAGATATCCTGTTT-TAGTGGATTCATATAT----CAACTTTAACT---TAAAGTT---GACT----------------------CCTG-AC-CCTC----TAAATTT---GAAA-AATT-GCAAGGATTAATCTTCTCA----CAAGA---CATGTTTGAAAA-AAAAAA--TCCTCTTCT-TTTT-TCAAGATATGACACCTGCAACATAGT--AAAACA-CCAACACAACATCTGGTTTCAGTTATGAATA---------TTTAT-TACAAAA---ATATAATGAATAACCAAAACTA
gi|5 : tttaattAGGGATTTGCCAATAAAGTACTCTTTTC-AGG-ACGTATT-TTGTATAAAAGGGGTTGTTCAGATATCTTGTTT-AAGTGGATTAATATAT----CAACTTTAACT---TACAGTTT--GATT----------------------CCTG-AC-CCCC----TAAATTT--AAAAA-AATG-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAA--TCCTCTTCA-TTTT-TCAAGATATGACACCTACAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAGATA---------TTTAT-TACAAAATATACACAATGAATAACCAAAACTA
gi|6 : ATTTGCCAATGAAGTACTCTTTT--AGG-ACCTATA-TTGTGTAAAAGGTGTGGTTCAGATGTGTCGTTT-TGGGGGGTTCCTATAT----TTACTTTAACT---TAAATAC---GAGT----------------------CCAG-CC-CCAC----TAAAATA--GAAAA-AACC-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAA--TCCTCTTCT-TTTT-TCAAGATATGACACCAGCAAAATAAT--AAAA-A-A-AACATAACATCTAGTTTCAGTTATAAATA---------TTTGT-TACAAAATATACACATTGAATAACCAAAACT
gi|7 : aATGAAGTAGTCTTTTC-AGG-ACCTATT-TTGTGTAAAAGGGATGGTTCAGATATGCTATTT-TAGTCGATTCATATAT----CAACTTAATCT---TAAAGTT---GACT----------------------CCTG-AC-CCCC----CTTCTTTTGAAAAA-AATG-GAAAAGATTAATCCTCTCA----CAAAA---CATGTTTG--AGAAAAAAA--TCCTCTTCT-TTTT-TCAAGATATGGCA-CTGCAAAATGGTAAAAAA-A-AAAACACAACATCTAGTTTCAGTTATCAATA---------TTTAT-AACAAAACATGCACAATGAATAACCAAAACTA
gi|8 : AGGGATTTGCCAATAGAGTACTTTTTTC-AGG-ACTTATT-TTGTGTAAAAGGGTTGGTTCCGATATCCTGTTT-TAGTGGATTTATATAT----CAACTTTAACT---TAAAGTT---GACT----------------------CCTG-AC-CCCC----TAAATTTGAAAAAA-AATG-GCAATGATTAATCCTCTCT----CAAAA---CATG---------------------------TTTT-TCAAGATATGACACCTACAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAGATA---------TTTAT-TACAAAATATACACAATGAATAACCAAAACTAa
gi|9 : attAGGGATTTGCCAATGAAGTACTCTTTTCCAGG-ATCTATT-TTGTGTAAAAGGGGTGGTTCAGATATGCTATTT-TAGTGAATTCATATAT----CAACTTAAACT---TAAAGCT---GACT----------------------CCTG-AC-CCCCC---TAAATTTG-AAAAA-AATG-GCAAGGATT---CATCGCA----CAAAA---CATGTTTG--AG-AATTAA--TTCTCTTCT-TTTT-TCAAGATATGACACCTGCAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAAATA---------TTTAT-TACAAAa
blockSeqs : C T A G A . . . AAA . A A C C TTGA . C AAAC AGT AA A A C A AA C T C AAATGATACT . T
blockSeqs : . . . G C . . . T . . . T . TGAA . . . . . . . . . . . . A T . T
blockSeqs : . . . G C . . . . . . . A . TGA . . . . . . . . . . . . C T . T
blockSeqs : . . . C C . . . . . . . C . TGA . . . . . . . . . . . . C G . T
blockSeqs : . . . C T . . . . . . . T . TGA . . . . . . . . . . . . A T . A
blockSeqs : . . . C T . . . . . . . T . TA . . . . . . . . . . . . A T . A
blockSeqs : . . . C T . . . . . . . C . AG . . . . . . . . . . . . C T . A
blockSeqs : . . . G T . . . . . . . A . TA . . . . . . . . . . . . C T . A
blockSeqs : . . . G C . . . . . . . C . AG . . . . . . . . . . . . A T . T
blockSeqs : . . . C T . . . . . . . C . A . . . . . . . . . . . . C T . A
blockSeqs : . . . G T . . . . . . . C . T . . . . . . . . . . C T . A
blockSeqs : . . . . T . . . . . . . . . . . . . . . .
blockSeqs : .
blockSeqCons : **** *** ********************** **** ** T*********
originalCons : AGGGATTTGCCAATGAAGTACTCTTTTC-AGG-ACCTATT-TTGTGTAAAAGGGGTGGTTCAGATATGCCGTTT-TAGTGGATTCATATAT----CAACTTTAACT---TAAAGTT---GACT----------------------CCTG-AC-CCCC----TAAATTT--AAAAA-AATG-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAA--TCCTCTTCT-TTTT-TCAAGATATGACACCTGCAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAAATA---------TTTAT-TACAAAATATACACANTGAATAACCAAAACTA
finalCons : AGGGATTTGCCAATGAAGTACTCTTTTC-AGG-ACCTATT-TTGTGTAAAAGGGGTGGTTCAGATATGCCGTTT-TAGTGGATTCATATAT----CAACTTTAACT---TAAAGTT---GACT----------------------CCTG-AC-CCCC----TAAATTT--AAAAA-AATG-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAA--TCCTCTTCT-TTTT-TCAAGATATGACACCTGCAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAAATAT---------TTAT-TACAAAATATACACANTGAATAACCAAAACTA
Alignments
lowQualScore : 2222222222222222222222 2222 1111111111
lowQualScore : 3 3 0 2 1 1 3 6666 555 888 7777777777777777777777 3 3 1 9999 0000 3 3 0 7777 555 44 3 77 3 3 44 6 3 3 2222222222 3 1
lowQualScore : . . . . . . . .... ... ... ...................... . . . .... .... . . . .... ... .. . .. . . .. . . . .......... . .
lowQualScore : 1 1 3 9 5 8 1 5555 444 555 3333333333333333333333 1 1 4 6666 4444 1 3 5 1111 888 66 3 99 6 6 66 2 1 5 7777777777 1 0
consensus : AGGGATTTGCCAATGAAGTACTCTTTTC-AGG-ACCTATT-TTGTGTAAAAGGGGTGGTTCAGATATGCCGTTT-TAGTGGATTCATATAT----CAACTTTAACT---TAAAGTT---GACT----------------------CCTG-AC-CCCC----TAAATTT--AAAAA-AATG-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAA--TCCTCTTCT-TTTT-TCAAGATATGACACCTGCAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAAATA---------TTTAT-TACAAAATATACACANTGAATAACCAAAACTA
Reference ( family-5114 ) : AGGGATTTGCCAATGAAGTACTCTTTTC-AGG-ACCTATT-TTGTGTAAAAGGGGTGGTTCAGATATGCCGTTT-TAGTGGATTCATATAT----CAACTTTAACT---TAAAGTT---GACT----------------------CCTG-AC-CCCC----TAAATTT--AAAAA-AATG-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAA--TCCTCTTCT-TTTT-TCAAGATATGACACCTGCAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAAATA---------TTTAT-TACAAAATATACACANTGAATAACCAAAACTA
gi|1 : AGAAATTGGTCAATGAAAAACTCTTTTC-GGG-ACCGATT-TTGTGTAAAAGGAGAGGTTCAGCTGTGCTGTTTATA-CGGATATATATATAACTCAACTTTAACTACTTAAAGTT---GACTCCTGCAATACACCTACCCCCCTCCTC-AC-CCCCGCCTTCAATTA--GAAAACAATC-ACAAGGATTGATCTTCTC-----TATAA---CGTGTTTG--AG-AAAAAAAATCCTCTACT-CATT-TCAA-ATATGACACCTGCAAATTAGC--AAAATA-AAAAAAC-CCATCTAGCTTCAGTTATCAACA----------TTATCTACAAAATATACTCATTGTATAGACAAA
gi|10 : attttaaatATTATTGT-TAAAATGGATGGTTCAGATTTGCAGTAA-TCATGGAGGCATATAT----ATATTTTAACA---AAAAAAAAAAGATT----------------------CCTT-GC-CCCC-------AC----AGCAA-AA-G-GCAATGATTAATCCTCTCT----CAAAT---CATGTATA--AG-ACAAAG--TTATCTTTTCTCCT-TCACGATATGAC-----TAAAGTGGT---AGA-A-ACAAGACAACATGCAACCACAGTTATACATAAAATGATACTTTG--TACAAGTTAT----ATTTAATAACAAAAAATA
gi|11 : gGTCAATGCAGTACTATTTTC-AAT-GCCGATC-TAGTGCAAAGTATGTGGTTCATAGTTGTCGTTT-TGATGGAGTCATATAT----TAATTTGAACA---TATAGTT---GAAT----------------------TCTG-AC-AC-------AAATTT--AAATA-CATG-TAAAAGAC--ATTTTCTAAAAACTAAAAAGTCATGTTTG--AG-AAAAAA--tg
gi|11 : AAA-A-AAAACACAACATATGGCTTCAGATATAAACA----------TTAC-TACAAAGTACATACATTGAGTAACAAAAaacacaacatatggcttcagatataaacattactacaaagtacatacattgagtaacaaaa
gi|12 : gtcaatgcagtactattttcaatgccgatctagtgcaaagtatgtggttcatagttgtcgttttgatggagtcatatattaatttgaacatatagttgaattctgacacaaatttaaatacatgtaaaagacattttctaaaaactaaaaagtcatgtttgagTTCAAATAT----CTACTTTAACT---TAAATTC---GCGT----------------------CCTG-ACACCTC----TAAATT----AGAA-AATACGCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAAA-TCCTCTTCC-TTTT-TCAAGATATGACACATGCAAAGTAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAAATA---------TTAAT-TACAAAATATACACATTGACAAATCAAAACTA
gi|13 : AAGGATTTGCCAATTAAGTACTGTTTTT-AGGTACC-GTT-TTGTGaa
gi|13 : gaatTTTAGGTA--CCGTTT-T-GTGGATTCATATAT----CAACTGTACAT---TAAAGTT---GACT----------------------CCTGAAC-CCAC----TAAATTA--GAAAA-AAgattcatatatcaactgtacattaaagttgactcctgaacccactaaattagaaaaaaggaag
gi|14 : gaataaggatttgccaattaagtactgttAAAATATGACATCTGCAAAATGGT--AAAA-A-ACAACATAACATCAGGCTTCAAATATAATCA---------TTTAT-TACAAACTATACACATTGAATAACCAAACCTAggaag
gi|15 : AGGGATTTGCCGATGAAGTACTCTTTT--AGG-ACATATA-TTGTGCAAAAGGGGTGGTTCAGATGTGTCGTTT-
gi|16 : GGATTTGCCAATATAGTATTCTTT-C-AGG-ACCGATT-TTGTGCAAAA-AGGTGGTT
gi|2 : AGGGATTTGCAAATGAAGTACTCTTTTC-AGG-ACTTATT-TTGTGTAAAAGGGGTGGTTAAGATATCCTGTTT-TAGTGAATTCATATAT----CAACTTTAACT---TAAAGTT---GACT----------------------CCTG-AC-CCCC----TAAATTTG-AAAAA-AATG-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAA--TCGTCTTCC-TTTT-TCAAGATATGACACCAACAAAATAGT--AAAA-ATAAAAC-C--CATCTAGTTTCAGTTATAAATA---------GTTAT-TACAAAACATACACAATGAATAAACAAAACT
gi|3 : aacattttagttAGGGATTTGCCAATGAAGTACTCTTTTC-AGG-ACTTATT-TTGTGTAAAAGGGGTGGTTCAAATATCCTGTTT--AGTGGATTCATATAT----CAATTTTAAAT---TAAAGTT---GACT----------------------CTAA-AC-CCTA----TAAGTTTG-AAAAA-AATG-GCAAGGATTTATCCTCTTA----AAAAA---CATGTTTG--AG-AAAAAA--TCTTCTTTT-TTTTATTAAGATATGACACCTACAAAACAGT--ATAA-A-AAAACACAACATCTAGTTTCAGTTATTGATA---------TTTAT-TACAAAATATACACAATGAATAACCAAAACTA
gi|4 : tttaattAGGGATTTGCCAATGAAGTACTCTTTTC-AAG-ACTTATT-TTGTGTAAAAGGGGTGGTTCAGATATCCTGTTT-TAGTGGATTCATATAT----CAACTTTAACT---TAAAGTT---GACT----------------------CCTG-AC-CCTC----TAAATTT---GAAA-AATT-GCAAGGATTAATCTTCTCA----CAAGA---CATGTTTGAAAA-AAAAAA--TCCTCTTCT-TTTT-TCAAGATATGACACCTGCAACATAGT--AAAACA-CCAACACAACATCTGGTTTCAGTTATGAATA---------TTTAT-TACAAAA---ATATAATGAATAACCAAAACTA
gi|5 : tttaattAGGGATTTGCCAATAAAGTACTCTTTTC-AGG-ACGTATT-TTGTATAAAAGGGGTTGTTCAGATATCTTGTTT-AAGTGGATTAATATAT----CAACTTTAACT---TACAGTTT--GATT----------------------CCTG-AC-CCCC----TAAATTT--AAAAA-AATG-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAA--TCCTCTTCA-TTTT-TCAAGATATGACACCTACAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAGATA---------TTTAT-TACAAAATATACACAATGAATAACCAAAACTA
gi|6 : ATTTGCCAATGAAGTACTCTTTT--AGG-ACCTATA-TTGTGTAAAAGGTGTGGTTCAGATGTGTCGTTT-TGGGGGGTTCCTATAT----TTACTTTAACT---TAAATAC---GAGT----------------------CCAG-CC-CCAC----TAAAATA--GAAAA-AACC-GCAAGGATTAATCCTCTCA----CAAAA---CATGTTTG--AG-AAAAAA--TCCTCTTCT-TTTT-TCAAGATATGACACCAGCAAAATAAT--AAAA-A-A-AACATAACATCTAGTTTCAGTTATAAATA---------TTTGT-TACAAAATATACACATTGAATAACCAAAACT
gi|7 : aATGAAGTAGTCTTTTC-AGG-ACCTATT-TTGTGTAAAAGGGATGGTTCAGATATGCTATTT-TAGTCGATTCATATAT----CAACTTAATCT---TAAAGTT---GACT----------------------CCTG-AC-CCCC----CTTCTTTTGAAAAA-AATG-GAAAAGATTAATCCTCTCA----CAAAA---CATGTTTG--AGAAAAAAA--TCCTCTTCT-TTTT-TCAAGATATGGCA-CTGCAAAATGGTAAAAAA-A-AAAACACAACATCTAGTTTCAGTTATCAATA---------TTTAT-AACAAAACATGCACAATGAATAACCAAAACTA
gi|8 : AGGGATTTGCCAATAGAGTACTTTTTTC-AGG-ACTTATT-TTGTGTAAAAGGGTTGGTTCCGATATCCTGTTT-TAGTGGATTTATATAT----CAACTTTAACT---TAAAGTT---GACT----------------------CCTG-AC-CCCC----TAAATTTGAAAAAA-AATG-GCAATGATTAATCCTCTCT----CAAAA---CATG---------------------------TTTT-TCAAGATATGACACCTACAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAGATA---------TTTAT-TACAAAATATACACAATGAATAACCAAAACTAa
gi|9 : attAGGGATTTGCCAATGAAGTACTCTTTTCCAGG-ATCTATT-TTGTGTAAAAGGGGTGGTTCAGATATGCTATTT-TAGTGAATTCATATAT----CAACTTAAACT---TAAAGCT---GACT----------------------CCTG-AC-CCCCC---TAAATTTG-AAAAA-AATG-GCAAGGATT---CATCGCA----CAAAA---CATGTTTG--AG-AATTAA--TTCTCTTCT-TTTT-TCAAGATATGACACCTGCAAAATAGT--AAAA-A-ACAACACAACATCTAGTTTCAGTTATAAATA---------TTTAT-TACAAAa