lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111
lowQualScore : 11 5555555555 333333333333 2 444444444444444444 2222222222 11111 111111 1111 111111111 33333333333333333333333333333 11111 11 5555555555 2222 1111 1 11 44444444444444444 11 2222 22 1 222222 11 55555555555555555555555555555555555 1 222 11 111 333 1 22222222 1 333333333333333333333333333333333333333333333333333333333333333333333333333333 11 55555555555555 33333 77777777777 1 5555555555 2222222222 11 11 1 222 111111111111111111 33333 333 333 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2 11 44444444444444444 1 1
lowQualScore : 11 1111111111 888888888888 666 1 3 5 6 99 1 999999999999999999 6 7777 1 3 7777777777 1 88 44444 0 9999 999 0 888888 1 4444 2 666666666 6 888 22222222222222222222222222222 88888 77 33 3333333333 6 0 3 6 3 1111 777 9999 4 3 3 0 99 7 3 00000000000000000 11 88 1 4 2 88 8888 66 3 444444 3 88 6 77777777777777777777777777777777777 3 333 4 22 777 444 5 7 00000000 6 7 4 000000000000000000000000000000000000000000000000000000000000000000000000000000 88 88 22222222222222 44444 66666666666 4 0 4 88 3 6 3 2 3 4444444444 3 6666666666 88 88 3 6 555 111111111111111111 22222 1 333 111 4 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 4 1 0 3 77 6 22222222222222222 6 3
lowQualScore : .. .......... ............ ... . . . . .. . .................. . .... . . .......... . .. ..... . .... ... . ...... . .... . ......... . ... ............................. ..... .. .. .......... . . . . . .... ... .... . . . . .. . . ................. .. .. . . . .. .... .. . ...... . .. . ................................... . ... . .. ... ... . . ........ . . . .............................................................................. .. .. .............. ..... ........... . . . .. . . . . . .......... . .......... .. .. . . ... .................. ..... . ... ... . ........................................................................................ . . . . .. . ................. . .
lowQualScore : 00 8888888888 000000000000 999 6 3 7 7 22 7 222222222222222222 5 8888 0 7 8888888888 0 33 77777 7 7777 888 3 333333 7 2222 5 777777777 7 333 77777777777777777777777777777 55555 55 88 8888888888 0 7 7 0 7 7777 555 7777 7 3 7 7 33 3 7 00000000000000000 77 33 0 0 5 00 5555 00 3 777777 7 33 7 33333333333333333333333333333333333 3 333 7 77 777 333 0 3 00000000 7 3 0 000000000000000000000000000000000000000000000000000000000000000000000000000000 00 00 55555555555555 00000 00000000000 0 5 0 55 0 0 0 5 0 5555555555 0 0000000000 00 33 3 7 777 777777777777777777 00000 0 555 555 0 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 7 0 3 7 55 0 55555555555555555 0 3
consensus : AGCACTCTAGATAAGG--TGCGTAT-T-TG-GTAAATACGCAAACA-AAAA--TGGTCAAGTACG-CATTTGTT-TTGAA-A--ATCAAGCGTAT------------------AAANACTCTNAAAGAANCTCCA-ATA-CGCAATNATTTTGATTTCCA---ANCGTATCGAAG-TNNAACG--TAACT-----GAGAAT----TCATTGTTTAC-T--TTAAG-AGATGATTGAC-------NGTAA--CA---ATTACCG-A-AAGTAAAGTATTTAA--CAAAAT----------GATCTAGACGGGTTATCGATTTT-TCGTCTTGTNACAATTA-CAAAAAGTANAGT-TTCGAATCA-AATGTCCGACAGCGATACTGG-ANTTA--ATCGGT--TTTTCGTCTTNTNCANNCGCTTNATGTTTATATG-AAAAA--TA-TANA--CCAGTCAACGTTATTTTNAAAATGGCGTCGC----GTGCGCGAAATA-----ACAAA----AACA-AAC---AAANACTTTACTCGATTATTTCGA-AAGTAA-NNAAT-GCATA--CCC-GGAACACGGAATAAACGTGGANAAGCGTAATACCATTATTAAGCCATTGATACTCAATGAACTGGTTGAAANAAATACAATGTCATGTTTGGAG-AAAAAANNATAAGAAANNCGACATGATNNGNNTGCTGTCAACGACAAGANCATTGGCTGAGTGGAAAGTAAAATNTCNGTGGTNAGCCNTNAACAGAATTGAGGGTGACATGNTCNTAGTCGGCTNATACTTTAATGTAAAATGCGAAAATGATATTGT-GTTTATGCAGCATGTTTTA--TA-TTCACTGTCTT--AATAGTTA---A--------------TCAAAACCACTGATCAN----AGTAACACTGTACTAATTTGATCNGCTGCTTCGATATNTTNCTCCCAAGTGCCGAGTAAT----ATACTCTATTAATTCA-AA-----T-----TN-TGGAGTATT---GGT--ACTCCTGC--ATT-GTCAGNACTCCTT-ATTTTNAAATNAAGGAACAAAATTCCCCATTTTGCAAAA-CTTATC-AGAGTGCTG-ACT
Reference ( gi|1 ) : AGCACTCTAGATAAGG--TGTATATAT-TG-GTTAATACGCAAAC--AGAA--TGATCAAGTACG-CATATGTT-TTGAA-A--ATCAAGCGTAT------------------AAAAACTCTAAAAGAATCTCCATGTA-TGCAATGATTTTGATTTCCA---ATCGTATCGAAG-TATAACG--TAACT-----GAGAAT----TCATTGTTAAC-T--TCAAG-AGATGATTGAC-------AGTAA--CA---A-TGCCG-A-AAGTGAAGAATTCAA--CAAAAT----------GATCCAGGCGGGCTATCGATTTT-TAATCTTGTTACAATTACCAAAAAGTAAAGT-TTCAAACCACAATGTCCAACAGCGATATTGGCAATTA--ATCAGT--TTTTCATCTTTTCCATACGCTGGA-GTTCATATG-AAAAG--TAGTACA--CCAGTCAATGTTATTTTCAAAATGGCTTAGC----GTTCGCTAAATA----TACAAA----AACA-AAC---AAATACTTTACTGAATTATTTTGG-AAGTAA-TCAATGGCATA--CCCAGGAACACAGAATAAATGTGGAAAAGCA------CAT--------------TA---AATGAACCGATTG--AAAAAT-CCA---CGTGTTCAGAGAAAAAAAGGA-AAAAAAATCGACATGAATTACATACCGTCAACGACAAGGAC-TTGGCTGATTGAAAAGTCAAATTTCCATGGTTAGTTGTAAACAGAATTGAGGGCGACATGTTCCTAATCAACTAATATTTTAATGTAAAATATTAAAATGATATTGTTGTTTATGCAGCCCGTTTTA--TA-TTCACTGTCTT--AATAGTTA---AA-------------TCAAAACCACTGATCAC----AGTAATACTGTACTACTTTGATTCTTTGCTTCGATATATTA--------TACCG--TAATTCATATACTCCATTAAGTCA-AA-----C-----TTAAGGAGTATT---GGT--ACTCCTACAGATTTGTCAGTACTTCTTCATTTTGAAATTGAGGAGTAAAATACTCCACTGACTAAAACCTTATCTAGAGTGCTG-ACT
gi|8 : AGCACTCTAGATAAGG--TGCGTAT-T-TGTGTTATTATGCAAACAAAAAA--TG-CCAAGGACA-CTTTTATT-TTTAACA--ATCAAGCA-ATCAAATAGCGAAAAAAAAAAAAAA----AAAAAAAGCAACAAGCACTGAAA-AACTTTCATTCCCACACAT-ATATCAGAGTTATAACA--TTGC------GAAGAT----CCATTGTTTAC-T--T-AAA-ACACGG-TGAC-------A
gi|10 : tacGCATTCCAGATAAGA--TGCGTA----------AATATGTGAAC--AAAAAATGGGCAAGTGCA-CATCTGATATTAAA-A--ATAAACCATTC------------------AGAGAC------ACGATC-----ATA-CGAAATTATTTTGGTTTCCA---CACATACTGAAG-TTGGATA--TATCC-----GAGATT----TCATTGTTTACTT--TTAAA-AAAT-----AC-------AGCAA--CA---A-
gi|4 : CACTGCAGATAAGGCATGTATTTGTGTA-ATTTATATATTAAC--AAAAG-TGTTCAAGTATG-CCTTTATT-TTGAA-ATTATCAAACGTTT------------------AACAACTCTCAAAGAAACCCAAAATT-AGTAATTATTTTGATTTCCA---TACATATTGAAG-ATTAATATTTAATTTTTAAAAAAATCTGACCAAT-TTAAT-TCATTAAG-AGTTAATTATCG------AGTAAATTATTTA-TACC--A-AAGT-----AT--AG--CAAAATC---------AATATGGACAGATTATAAATTTTCTGTTCTTTTTCTAATT---AAAATGTATATT-TTGAATTAATAA--ACAAACAG---TA-----AATCA--GTCAGTCATTTTCA
gi|15 : CTCTACATTTGG--CATGTGT-T-TGAGTAAATATGCAAACAAAAAA--TGGGCAAGTA-G-CCTTTATT-TTGAC-A--ATCAAGC
gi|5 : attgtagccgtgCTAGATAAGG--TACACAT-T-TGCACAAATACGCAAAC--------------AGTAGC-CAT-TGTT-TTAAA-A--AGCAAAGGTAT------------------TAATACTCTCTTATAAACT--------TAC----ATTTTTATCTCCT---AGCATATCAGAG-TTAAACG--ATGCT-----GAG-AT----T--TTGTT--C-T--T---GTAAATCACTGACCATACCTGGTAA--TA---ATTAACA-ATAAGTAGAGTATTTGAATCAAAATGTGTGAAAGCGAACTAGACTTGTTATTGATTAT-TTGTCTTA-TACAAT
gi|9 : a-GTAAAAACGCATAC--AAAAA-TGATTAAGTACG-CATTTGTT-TTGAA-A--ATCAAGCGTAT------------------AAATACTCTAAAAGAATCTCCATGTA-TGCAATGATTTTGATTTCCA---ATCGTATCAAAG-TAAAACG--TAACT-----GAAAAT----TAGTTGTTTAC-T--TTGGG-AGATGATCGAC-------TGTAA--CA---ATTACCG-A-AAGTAAAGTATTTAA--CAAAAC----------G
gi|16 : AACACGCAAACA-AAAA--TAATCAAGAACGCCAT-TGTT-
gi|2 : tacggtacgtagttgcacaAACCATAT------------------AAATACTCTTAAAGAATCTCCATATA-CACAATGACTTTGATTTCCA---ATCGTATCGAAG-TATAACA--TAACT-----GAGAAT----TCATTGTTTAC-T--TCGAG-AGATGATTGAC-------CAAAA--CA---ATTACCGAA-AAGTAAAGAATTCAA--CAAAAT----------GATCTAAGTGGGTTATCGATTTT-TCATCTTGTAACAATTACC-AAAAGTAAAGT-ATCAAACC---ATGTCCAACAACGATATTGGCGGGTA--ATTGGT--TTTTCGTCTTTTCCATACGCTTGA-GTTTATATGAAAAAG--TTGTACA--CCAGTCAATGTTACTTTGAAAATGGTGTCGC----GTGCGCGAAATA----AACAAA----AACA-AAC---AAATACTTTACTGGATTTTTTTTA-AAGTAA-CCTATTGCATACTCCC---AACACGGAATAATTGTGGAAAAGCA------CATTATTAAGCCATTGATA---AATGAACTGATTGAAAAAAATATAA---CATGTTTGGAG-AAAAAAGTA-AAAAAAAACGACATGATGGACTTGCTGTCAATGACAAGACC-TTGGCTGAGTGGAAAGTAAAATATCAGTGGTTAGTCGTAAACAGAATTGAGG
gi|3 : CTGGTAATAATTAACAATAAGTAGAGTATTTGAATCAAAATGTGTGAAAGCGA-ACTAG-ACTTGTTATTGAT--TATTTGTCTTATACAATCGCTTTATGTT--TATG-AAAAAATTA-TAAA--CCAGTCATCCTTATTTTAAAAATGGCGTTGC----ATGTGTGAAAAAACATTGCAAGGAACAACA-AAC---AAAAACTTTACTCGATTATTTCAG-AAATAATTTAAT-TCATA--CCTTGGAACATGTAGTAAATGTGGATAAGTGTAATACCAT--------------TACTCAATAA----GTTA--ACAAAT-CAATGTCATGTT-----------ATGATAAGAAATTTG--ATGATCTGAATATT----ACGATAA-AACATTGACTG-----------AAATTTCTATGGTAAGCCTTCAACAGAATTGAGGGTGACAagga
gi|11 : cTG-AAAAA--TATTATAAACAATTCAATGTTATTTTCAAAATGCCATCGCAGAGGTGAATCAAGTA-----AGAAA----AACATAACTAAAAACACTTTGCTTGATTATTTTGACAAGAAAGGGAATGGTA-A--CACAGAAA-AC-GAATTAACATTGA
gi|6 : tacATGTTCCTAATCAACTCATATTT--ATGTAAAATATGAAAATGATATTGT---TTATGCAGCTTGTTTTA--TA-TTCACTGTCTT--AATAGTTA---AT-------------TCAAAACCACTGGTCAC----AGGAATACTGTACTA---TGATCTGTTGCTTCGATATATTT--------TGCCG--TAAT-----TACTCTATTAATTCA-AG-----T-----TGCTGGAGTATT---G------------------GTCAGTACTCCTTTATTTTGAAAT
gi|12 : ATGGTCATAGTCGGCTAATACTTTA--------TGCTAAAA----AT----GTTTATACAGCATGTTTTA--TA-TTCACT-CCTTTAAATAGTTATATAAATTTATTTAGTCGTCAAAACCACTGATTATTTGAAGTGACACTATACTggtgtcagaggaaa
gi|13 : caatttgtttgggtTGTTGTTTATGCATCATGTCTTAAATAGTTAAATGTATT----TAGTTG------------------TCAAAACCACTGATCAA----AGTAACACTGT
gi|7 : caagttgttctggtatggtcatagttggcttgtatttatgctgagcTACTAATTTGATCAGCTGCTTTGATATTTTACTCCCAAGTGCCGAGTAA-----ATACTCGGTTATTTCACAA-----T-----CT--GGGATAATCAGGGTCAACTCCTGCAAATTTGTCAACACTCCTTAATATTAGAATAAAGGAACAAAATTCCCCATTTTGCAAAA----ATC-AGAGTGCTGCACTtgactgtac
gi|14 : ATACTCTATTAACTAA-AAAATCACAGATATCATGAAGTATT---GGT--ACTCCTAC-CATTGGTTAGAACTTCAT-ATTTTTAAATCAAGGAATAAAAT-----------------CTTATTAAGAGTGCTG-ATTtagtaacaaataatcttgttttttaagtataaatgaaaaat
gi|8 : ataACCTTATCTAGAGTGCTG-
Alignments
lowQualScore : 11111111111111111111111111111
lowQualScore : 2 333333333333333 22222222222 1111 11111 11111 111 22222222 11 4444444444 111 22 1 11111 22222222 2 333333333 2222 111 33333333 1 1 111 1111 3333 1 1 22 55555555555555555555555555555 11 3333333 11 1 2 11111111111 444444444 1 111111111 11 1 111 8888888888888888888888 22222 1 777777777 3333 11 666666666666666 111 111 4444444444 1 2 555555555555555555555555 1
lowQualScore : 77 5 0 888 5 77 0 0 1 6 5 5 77 0 555555555555555 1 1 3 77777777777 5 3 2222 22 77 777 77 22222 0 44 44444 1 5 000 5 1 5 99999999 0 8 8 1 0 11 3333333333 0 0 222 8 33 1 2 0 44444 0 7 0 88888888 0 1 1 22 1 3 7 111111111 1 2 1 0 0 1111 0 2 111 66666666 0 0 777 1 6 0000 2222 0 2 0 0 00 6 2 1 55555555555555555555555555555 999 0 6 33 8888888 66 22 6 0 22 7 44444 0 6 6 1 3 66666666666 1 11 1 0 1 1 333 1 1 1 2 555555555 5 3 555555555 3 33 0 2 777 2222222222222222222222 22222 5 1 0 1 222222222 2222 00 0 0 000000000000000 777 777 6666666666 1 0 0 1 1 0 999999999999999999999999 3
lowQualScore : .. . . ... . .. . . . . . . .. . ............... . . . ........... . . .... .. .. ... .. ..... . .. ..... . . ... . . . ........ . . . . . .. .......... . . ... . .. . . . ..... . . . ........ . . . .. . . . ......... . . . . . .... . . ... ........ . . ... . . .... .... . . . . .. . . . ............................. ... . . .. ....... .. .. . . .. . ..... . . . . . ........... . .. . . . . ... . . . . ......... . . ......... . .. . . ... ...................... ..... . . . . ......... .... .. . . ............... ... ... .......... . . . . . . ........................ .
lowQualScore : 11 0 5 888 0 00 8 2 4 2 0 7 99 2 777777777777777 0 4 0 00000000000 3 0 1111 66 99 777 99 33333 1 33 33333 7 7 000 7 0 2 33333333 8 0 0 4 8 00 0000000000 2 2 222 8 22 0 5 0 66666 7 3 7 00000000 7 0 0 00 0 7 3 888888888 0 0 0 2 2 2222 2 5 000 22222222 0 0 555 0 5 8888 0000 0 5 0 2 22 5 0 0 00000000000000000000000000000 777 7 7 00 0000000 00 00 0 7 00 3 77777 7 7 7 0 7 33333333333 0 77 0 7 0 0 555 0 0 0 0 222222222 0 2 222222222 5 88 0 5 000 8888888888888888888888 22222 3 0 7 0 000000000 3333 66 8 8 888888888888888 555 000 5555555555 0 0 0 0 0 7 777777777777777777777777 3
consensus : AGCACTCTAGATAAGGCGCGTAT-TTGCGTAA---ATACGCAAACA-AAAA-TGGTCAAGTACGCNTTTGTT-TTGAA-A--ATCAAGCGTAT---------------AAANACTCTNAAAGAANCTCCATA---TACGCAATGA----TTTTGATTTCCAANCGTAT--CGAAGTNN-AACG--TAACT----GAGAATTCATTG-----TTTAC-T---T-TAAGAGATGATTGAC-------NGTAACAATTACCG-A-AAGTAAAGTATTTAA--CAAAAT----------GATCTAGGCGGGTTATCGATTTTTCG-TCTTGTNACAATTA-CAAAAAGTAAAGT-TTCGAACCA-AA-TGTCCGACAGCGATATTGGCANTTA--ATCGGTTTTTCGTCTTTTCCATACGCTTGA-GTTTATATGAAAAAGTTA-T---ANACCAGTCAATGTTATTTTNAAAATGGCGTCGC----GTGCGCGAAAT-A-ACA--------AA-AACA-AAC---AAATACTTTACTNGATTATTTCGG-AAGTAA-TT-AAT-GCAT-ACCC-GGAACACGGAATAAACGTGGAAAAGCG------CATTA-----------------AATGAACCGATTGAAA-AAAT-CAA---CGTGTTCGGAGAAAAAANGA-AAAAAAATCGACATGATNTACATACTGTCAACGACAAGAAC-TTGGCTGA-TGGAAAGT-AAATTTCNATGGTTAGTCGTAAACAGAATTGAGGGTGACATGNTCNTAGTCGGCTNATATTTTAATGTAAAATGCTAAAATGATATTG-T-GTTTATGCAGCNTGTTTTA--TA-TTCACTGTCTT--AATAGTT-A-----------------AT-CAAAACCACTGATCA----NAGTAACACTGTACTA-TTTGATCCGTTGCTTCGATATATTA--------TGCCG--A-TAATATACTCTATTAATTCAAA-----------TTA-TGGAGTATT---GGT--ACTCCTA-CAGATTT-GTCAGTACTCC-TT-ATTTTGAAATCGAGGAATAAAAT-CCCCACT---CAAAA-CTTATC-AGAGTGCTG-ACT
Reference ( family-5058 ) : AGCACTCTAGATAAGGTGCGTAT-TTG-GTAA---ATACGCAAACA-AAAA-TGGTCAAGTACGCATTTGTT-TTGAA-A--ATCAAGCGTAT---------------AAANACTCTNAAAGAANCTCCA-A---TACGCAATNA----TTTTGATTTCCAANCGTAT--CGAAGTNN-AACG--TAACT----GAGAATTCATTG-----TTTAC-T---T-TAAGAGATGATTGAC-------NGTAACAATTACCG-A-AAGTAAAGTATTTAA--CAAAAT----------GATCTAGACGGGTTATCGATTTTTCG-TCTTGTNACAATTA-CAAAAAGTANAGT-TTCGAATCA-AA-TGTCCGACAGCGATACTGG-ANTTA--ATCGGTTTTTCGTCTTNTNCANNCGCTTNATGTTTATATGAAAAA--TA-T---ANACCAGTCAACGTTATTTTNAAAATGGCGTCGC----GTGCGCGAAAT-A-ACA--------AA-AACA-AAC---AAANACTTTACTCGATTATTTCGA-AAGTAA-NN-AAT-GCAT-ACCC-GGAACACGGAATAAACGTGGANAAGCGTAATACCATTATTAAGCCATTGATACTCAATGAACTGGTTGAAANAAATACAATGTCATGTTTGGAGAAAAAANNATAAGAAANNCGACATGATNNGNNTGCTGTCAACGACAAGANCATTGGCTGAGTGGAAAGTAAAATNTCNGTGGTNAGCCNTNAACAGAATTGAGGGTGACATGNTCNTAGTCGGCTNATACTTTAATGTAAAATGCGAAAATGATATTG-T-GTTTATGCAGCATGTTTTA--TA-TTCACTGTCTT--AATAGTT-A-----------------AT-CAAAACCACTGATCA----NAGTAACACTGTACTAATTTGATCNGCTGCTTCGATATNTTNCTCCCAAGTGCCG--AGTAATATACTCTATTAATTCAAA-----------TTN-TGGAGTATT---GGT--ACTCCTG-CA---TT-GTCAGNACTCC-TT-ATTTTNAAATNAAGGAACAAAATTCCCCATTTTGCAAAA-CTTATC-AGAGTGCTG-ACT
gi|1 : AGCACTCTAGATAAGGTGTATATATTG-GTTA---ATACGCAAACA-GAA--TGATCAAGTACGCATATGTT-TTGAA-A--ATCAAGCGTAT---------------AAAAACTCTAAAAGAATCTCCATG---TATGCAATGA----TTTTGATTTCCAATCGTAT--CGAAGTAT-AACG--TAACT----GAGAATTCATTG-----TTAAC-T---T-CAAGAGATGATTGAC-------AGTAACAA-TGCCG-A-AAGTGAAGAATTCAA--CAAAAT----------GATCCAGGCGGGCTATCGATTTTTAA-TCTTGTTACAATTACCAAAAAGTAAAGT-TTCAAACCACAA-TGTCCAACAGCGATATTGGCAATTA--ATCAGTTTTTCATCTTTTCCATACGCTGGA-GTTCATATGAAAAG--TAGT---ACACCAGTCAATGTTATTTTCAAAATGGCTTAGC----GTTCGCTAAAT-ATACA--------AA-AACA-AAC---AAATACTTTACTGAATTATTTTGG-AAGTAA-TC-AATGGCAT-ACCCAGGAACACAGAATAAATGTGGAAAAGCA------CATTA-----------------AATGAACCGATTGAA--AAATCCA----CGTGTTCAGAGAAAAAAAGGAAAAAAAATCGACATGAATTACATACCGTCAACGACAAGGAC-TTGGCTGATTGAAAAGTCAAATTTCCATGGTTAGTTGTAAACAGAATTGAGGGCGACATGTTCCTAATCAACTAATATTTTAATGTAAAATATTAAAATGATATTGTT-GTTTATGCAGCCCGTTTTA--TA-TTCACTGTCTT--AATAGTTAA-----------------AT-CAAAACCACTGATCA----CAGTAATACTGTACTACTTTGATTCTTTGCTTCGATATATTA--------TACCGTAATTCATATACTCCATTAAGTCAAAC----------TTA-AGGAGTATT---GGT--ACTCCTA-CAGATTT-GTCAGTACTTC-TTCATTTTGAAATTGAGGAGTAAAATACTCCACTGACTAAAACCTTATCTAGAGTGCTG-ACT
gi|10 : GCATTCCAGATAAGATGCGTA---------A---ATATGTGAACA-AAAAATGGGCAAGTGCACATCTGATATTAAA-A--ATAAACCATTC---------------AGAGAC-----ACGA---TC---A---TACGAAATTA----TTTTGGTTTCCACACATAC--TGAAGTTG-GATA--TATCC----GAGATTTCATTG-----TTTACTT---T-TAAAAAAT-----AC-------AGCAACAA
gi|11 : TGAAAAA--TA-TTATAAACAATTCAATGTTATTTTCAAAATGCCATCGCAGAGGTGAATCAAGT-A-AGA--------AA-AACATAACTAAAAACACTTTGCTTGATTATTTTGACAAGAAAGGG-AAT-G-GTAACAC-AGAAAAC-GAATTAACATTGA
gi|12 : tacGGGT---ATGGTCATAGTCGGCTAATACTTTA--------TGCTAAAA-------A-T-GTTTATACAGCATGTTTTA--TA-TTCACT-CCTTTAAATAGTT-ATATAAATTTATTTAGTCGT-CAAAACCACTGATTATTTGAAGTGACACTATACT
gi|13 : caatttgtttTGGTATGGTCATAGTTGGCTTGTATTT---------ATGC-----TGA-GCTG-TTGTTTATGCATCATGTCTTAAATAGTTAAATGTATT----TAGTT-G------------------T-CAAAACCACTGATCA----AAGTAACACTGT
gi|14 : caagttgttcATACTCTATTAACTAAAAAATCACAGATATCA-TGAAGTATT---GGT--ACTCCTACCA---TTGGTTAGAACTTC-AT-ATTTTTAAATCAAGGAATAAAAT-----------------CTTATTAAGAGTGCTG-ATTtgactgtac
gi|15 : ataCTCTACATTTGGCATGTGT-TTGAGTAA---ATATGCAAACAAAAAA-TGGGCAAGTA-GCCTTTATT-TTGAC-A--ATCAAGC
gi|16 : attgtagccgtgTACGGTACGTAG-TTGCACAA---ACACGCAAACA-AAAA-TAATCAAGAACGCCATTGTT-
gi|2 : AACCATAT---------------AAATACTCTTAAAGAATCTCCATA---TACACAATGA----CTTTGATTTCCAATCGTAT--CGAAGTAT-AACA--TAACT----GAGAATTCATTG-----TTTAC-T---T-CGAGAGATGATTGAC-------CAAAACAATTACCGAA-AAGTAAAGAATTCAA--CAAAAT----------GATCTAAGTGGGTTATCGATTTTTCA-TCTTGTAACAATTA-CCAAAAGTAAAGT-ATCAAACC---A-TGTCCAACAACGATATTGGCGGGTA--ATTGGTTTTTCGTCTTTTCCATACGCTTGA-GTTTATATGAAAAAGTTG-T---ACACCAGTCAATGTTACTTTGAAAATGGTGTCGC----GTGCGCGAAATAA-ACA--------AA-AACA-AAC---AAATACTTTACTGGATTTTTTTTA-AAGTAACCT-ATT-GCAT-ACTC-CCAACACGGAATAATTGTGGAAAAGCA------CATTATTAAGCCATTGATA---AATGAACTGATTGAAAAAAATATAA---CATGTTTGGAGAAAAAAGTA-AAAAAAAACGACATGATGGACTTGCTGTCAATGACAAGACC-TTGGCTGAGTGGAAAGTAAAATATCAGTGGTTAGTCGTAAACAGAATTGAGG
gi|3 : CTGGTAATAATTAACAATAAGTAGAGTATTTGAATCA-AAATGTGTGAAAGCGA-ACTAG-ACTTGTTATTGATTATTTGTCTTATACAATCGCTTTATGTTTAT--GAAAAAATTA-T---AAACCAGTCATCCTTATTTTAAAAATGGCGTTGC----ATGTGTGAAAA-A-ACATTGCAAGGAACAACA-AAC---AAAAACTTTACTCGATTATTTCAG-AAATAA-TTTAAT-TCAT-ACCTTGGAACATGTAGTAAATGTGGATAAGTGTAATACCATTA--------------CTCAATAA----GTT--AACAAAT-CAATGTCATGTT----------ATGATAAGAAATTTG--ATGATCTGAATATT----ACGATAA-AACATTGACTG-----------AAATTTCTATGGTAAGCCTTCAACAGAATTGAGGGTGACAagga
gi|4 : cCACTGCAGATAAGGCATGTAT-TTGTGTAATTTATATATTAACA-AAAG-TGTTCAAGTATGCCTTTATT-TTGAA-ATTATCAAACGTTT---------------AACAACTCTCAAAGAAAC-CCA-AAATTA-GTAATTA----TTTTGATTTCCATACATAT--TGAAGATT-AATATTTAATTTTTAAAAAAATC--TGACCAATTTAA-TTCAT-TAAGAGTTAATTATCG------AGTA--AATTATTT-A-TACCAAAGTA--TAG--CAAAATC---------AATATGGACAGATTATAAATTTTCTGTTCTTTTTCTAATT---AAAATGTATA-T-TTTGAATTA-A
gi|5 : CTAGATAAGGTACACAT-TTGCACAA---ATACGCAAACA-G----TAGCCA---------TTGTT-TTAAA-A--AGCAAAGGTAT---------------TAATACTCTCTTATAAACT--------TAC------A----TTTTTATCTCCTAGCATAT--CAGAGTTA-AACG--ATGCT----GAG-ATT--TTG-----TT--C-T---TGTAA---ATCACTGACCATACCTGGTAATAATTAACA-ATAAGTAGAGTATTTGAATCAAAATGTGTGAAAGCGAACTAGACTTGTTATTGATTATTTG-TCTTAT-ACAATtaaacaaacagtaaatcagtcagtcattttca
gi|6 : aATGTTCCTAATCAACTCATATTT--ATGTAAAATATGAAAATGATATTG-T---TTATGCAGCTTGTTTTA--TA-TTCACTGTCTT--AATAGTT-A-----------------ATTCAAAACCACTGGTCA----CAGGAATACTGTACTA---TGATCTGTTGCTTCGATATATTT--------TGCCG----TAAT-TACTCTATTAATTCAAG-----------TTGCTGGAGTATT---GGT--------------------CAGTACTCCTTT-ATTTTGAAAT
gi|7 : TACTAATTTGATCAGCTGCTTTGATATTTTACTCCCAAGTGCCG--AGTAA-ATACTCGGTTATTTCACA-----------ATC-TGGGATAATCAGGGTCAACTCCTG-CAAATTT-GTCAACACTCC-TTAATATTAGAATAAAGGAACAAAATTCCCCATTTTGCAAAA----ATC-AGAGTGCTGCACTggtgtcagaggaaa
gi|8 : AGCACTCTAGATAAGGTGCGTAT-TTGTGTTA---TTATGCAAACA-AAAA-ATGCCAAGGACACTTTTATT-TTTAACA--ATCAAGCA-ATCAAATAGCGAAAAAAAAAAA----AAAAAAAAAAGCA-A---CAAGCACTGAAAAACTTTCATTCCCACACATATATCAGAGTTATAACA--TTGC-----GAAGATCCATTG-----TTTAC-T---T-AAAtagtaacaaataatcttgttttttaagtataaatgaaaaat
gi|9 : tac-GTAA---AAACGCATACA-AAAA-TGATTAAGTACGCATTTGTT-TTGAA-A--ATCAAGCGTAT---------------AAATACTCTAAAAGAATCTCCATG---TATGCAATGA----TTTTGATTTCCAATCGTAT--CAAAGTAA-AACG--TAACT----GAAAATTAGTTG-----TTTAC-T---T-TGGGAGATGATCGAC-------TGTAACAATTACCG-A-AAGTAAAGTATTTAA--CAAAAC----------Gacacggtgaca
Alignments
lowQualScore : 444444444444444444 11111 11111 111 22222222 11 4444444444 111 22 1 2222 11 1 1 2222 111 33333333 1 1 111 1111 3333 1 1 22 99999999999999999999999999999 11 222 1 222 222222 1 1 5555555555 444444444 3333333 11 1 111 999999999999999999999 22222 11 22 555555555555555555555555 666666666666666 22222222 11 1 2 99999999999999999999999999 1
lowQualScore : 999 5 5 888 5 77 44 4 1 5 5 77 0 222222222222222222 1 1 3 3 99999 66 3 22 77 5 22 77 22222 0 44 44444 1 5 000 5 1 5 99999999 0 8 8 1 0 11 3333333333 0 0 222 8 33 1 2 0 5555 0 7 6 1 88 0 3 7 3 0 1 1 0 0 1111 0 2 111 66666666 0 0 777 1 1 0000 1111 0 2 0 0 00 6 2 44444444444444444444444444444 00 777 3 333 444444 1 3 6 1 6 6 3 7777777777 1 333 1 1 1 555555555 3 1111111 2 1 33 0 2 777 111111111111111111111 22222 11 33 3 333333333333333333333333 0 0 000000000000000 00000000 0 55 3 1 0 0 0 44 44444444444444444444444444 3
lowQualScore : ... . . ... . .. .. . . . . .. . .................. . . . . ..... .. . .. .. . .. .. ..... . .. ..... . . ... . . . ........ . . . . . .. .......... . . ... . .. . . . .... . . . . .. . . . . . . . . . .... . . ... ........ . . ... . . .... .... . . . . .. . . ............................. .. ... . ... ...... . . . . . . . .......... . ... . . . ......... . ....... . . .. . . ... ..................... ..... .. .. . ........................ . . ............... ........ . .. . . . . . .. .......................... .
lowQualScore : 444 7 3 888 0 00 11 5 0 0 7 99 2 111111111111111111 0 4 0 0 00000 00 0 66 99 7 00 99 33333 1 33 33333 7 7 000 7 0 2 33333333 8 0 0 4 8 00 0000000000 2 2 222 8 22 2 5 0 6666 7 3 7 0 33 7 3 3 2 0 0 0 2 2 2222 2 5 000 22222222 0 0 555 2 0 2222 5555 0 5 0 2 22 5 0 77777777777777777777777777777 33 333 3 333 777777 0 3 7 0 7 7 3 0000000000 0 555 0 0 0 222222222 2 8888888 5 0 88 0 5 000 888888888888888888888 22222 00 22 7 666666666666666666666666 8 8 555555555555555 88888888 8 88 0 2 0 0 2 33 77777777777777777777777777 3
consensus : AGCACTCTAGATAAGGTACGTAT-TTGCGTAA---ATACGCAAACA-AAAA-TGGTCAAGTACGCCTTTGTT-TTGAA-A--ATCAAGCGTAT------------------AAANACTCTNAAAGAANCTCCATGTACGCAATGATTTTGATTTCCAANC--GTATCGAAG-TNTAACG--TAACT----GAGAATTCATTG-----TTTAC-T---T-TAAGAGATGATTGAC-------NGTAACAATTACCGA-AA-GTAAAGTATTTAA--CAAAAT----------GATCTAGGCGGGTTATCGATTTTTCG-TCTTGTNACAATTA-CAAAAAGTAAAGT-TTCGAACCA-AA-TGTCCGACAGCGATATTGGCANTTA--ATCGGTTTTTCGTCTTTTCCATACGCTTGA-GTTTATATGAAAAA-GTTGTANACCAGTCAATGTTATTTTNAAAATGGCGTCGC----GTGCGCGAAAT-A-ACA--------AA-AACA-AAC---AAATACTTTACTNGATTATTTCGG-AAGTAA-TT-AAT-GCAT-ACCC-GGAACACGGAATAAACGTGGAAAAGCG------CAT--------------TA---AATGAACCGATTG-AAAAAAT-CAACGT---GTTCGGAG-AAAAAAGGAAAAAAAATC-GACATGATNTACATACTGTCAACGACAAGAAC-TTGGCTGA-TGGAAAGT-AAATTTCNATGGTTAGTCGTAAACAGAATTGAGGGTGACATGNTCNTAGTCGGCTNATATTTTAATGTAAAATGCTAAAATGATATTG-TGTTTATGCAGCNTGTTTTA--TA-TTCACTGTCTT--AATAGTT-A-----------------A-TCAAAACCACTGATCA----NAGTAACACTGT--ACTA-TTTGATCCGTTGCTTCGATATATTA--------TGCCG--TA----ATATACTCTATTAATTCAAA-----------TTA-TGGAGTATT---GGT--ACTCCTACAGATTTGTCAGTACTCC-TT-ATTTTGAAATCGAGGAATAAAA-T-CCCCACT---CAAAA-CTTATC-AGAGTGCTG-ACT
Reference ( family-5058 ) : AGCACTCTAGATAAGGCGCGTAT-TTGCGTAA---ATACGCAAACA-AAAA-TGGTCAAGTACGCNTTTGTT-TTGAA-A--ATCAAGCGTAT------------------AAANACTCTNAAAGAANCTCCATATACGCAATGATTTTGATTTCCAANC--GTATCGAAG-TNNAACG--TAACT----GAGAATTCATTG-----TTTAC-T---T-TAAGAGATGATTGAC-------NGTAACAATTACCGA-AA-GTAAAGTATTTAA--CAAAAT----------GATCTAGGCGGGTTATCGATTTTTCG-TCTTGTNACAATTA-CAAAAAGTAAAGT-TTCGAACCA-AA-TGTCCGACAGCGATATTGGCANTTA--ATCGGTTTTTCGTCTTTTCCATACGCTTGA-GTTTATATGAAAAA-GTTATANACCAGTCAATGTTATTTTNAAAATGGCGTCGC----GTGCGCGAAAT-A-ACA--------AA-AACA-AAC---AAATACTTTACTNGATTATTTCGG-AAGTAA-TT-AAT-GCAT-ACCC-GGAACACGGAATAAACGTGGAAAAGCG------CAT--------------TA---AATGAACCGATTG-AAAAAAT-CAACGT---GTTCGGAG-AAAAAANGAAAAAAAATC-GACATGATNTACATACTGTCAACGACAAGAAC-TTGGCTGA-TGGAAAGT-AAATTTCNATGGTTAGTCGTAAACAGAATTGAGGGTGACATGNTCNTAGTCGGCTNATATTTTAATGTAAAATGCTAAAATGATATTG-TGTTTATGCAGCNTGTTTTA--TA-TTCACTGTCTT--AATAGTT-A-----------------A-TCAAAACCACTGATCA----NAGTAACACTGT--ACTA-TTTGATCCGTTGCTTCGATATATTA--------TGCCGA-TA----ATATACTCTATTAATTCAAA-----------TTA-TGGAGTATT---GGT--ACTCCTACAGATTTGTCAGTACTCC-TT-ATTTTGAAATCGAGGAATAAAA-T-CCCCACT---CAAAA-CTTATC-AGAGTGCTG-ACT
gi|1 : AGCACTCTAGATAAGGTGTATATATTG-GTTA---ATACGCAAACA-GAA--TGATCAAGTACGCATATGTT-TTGAA-A--ATCAAGCGTAT------------------AAAAACTCTAAAAGAATCTCCATGTATGCAATGATTTTGATTTCCAATC--GTATCGAAG-TATAACG--TAACT----GAGAATTCATTG-----TTAAC-T---T-CAAGAGATGATTGAC-------AGTAACAA-TGCCGA-AA-GTGAAGAATTCAA--CAAAAT----------GATCCAGGCGGGCTATCGATTTTTAA-TCTTGTTACAATTACCAAAAAGTAAAGT-TTCAAACCACAA-TGTCCAACAGCGATATTGGCAATTA--ATCAGTTTTTCATCTTTTCCATACGCTGGA-GTTCATATG-AAAA-GTAGTACACCAGTCAATGTTATTTTCAAAATGGCTTAGC----GTTCGCTAAAT-ATACA--------AA-AACA-AAC---AAATACTTTACTGAATTATTTTGG-AAGTAA-TC-AATGGCAT-ACCCAGGAACACAGAATAAATGTGGAAAAGCA------CAT--------------TA---AATGAACCGATTG--AAAAAT-CCACGT---GTTCAGAGAAAAAAAGGAAAAAAAATC-GACATGAATTACATACCGTCAACGACAAGGAC-TTGGCTGATTGAAAAGTCAAATTTCCATGGTTAGTTGTAAACAGAATTGAGGGCGACATGTTCCTAATCAACTAATATTTTAATGTAAAATATTAAAATGATATTGTTGTTTATGCAGCCCGTTTTA--TA-TTCACTGTCTT--AATAGTTAA-----------------A-TCAAAACCACTGATCA----CAGTAATACTGT--ACTACTTTGATTCTTTGCTTCGATATATTA--------TACCG--TAATTCATATACTCCATTAAGTCAAAC----------TTA-AGGAGTATT---GGT--ACTCCTACAGATTTGTCAGTACTTC-TTCATTTTGAAATTGAGGAGTAAAA-TACTCCACTGACTAAAACCTTATCTAGAGTGCTG-ACT
gi|10 : GCATTCCAGATAAGA---------TGCGTAA---ATATGTGAACA-AAAAATGGGCAAGTGCACATCTGATATTAAA-A--ATAAACCATTC------------------AGAGAC-----ACGA---TC---ATACGAAATTATTTTGGTTTCCACAC--ATACTGAAG-TTGGATA--TATCC----GAGATTTCATTG-----TTTACTT---T-TAAAAAAT-----AC-------AGCAACAA
gi|11 : TGAAAAATATTATAAACAATTCAATGTTATTTTCAAAATGCCATCGCAGAGGTGAATCAAGT-A-AGA--------AA-AACATAACTAAAAACACTTTGCTTGATTATTTTGACAAGAAAGGG-AAT-G-GTAACAC-AGAAAAC-GAATTAACATTGA
gi|12 : tacGGGT---ATGGTCATAGTCGGCTAATACTTTA--------TGCTAAAA-------A-TGTTTATACAGCATGTTTTA--TA-TTCACT-CCTTTAAATAGTT-ATATAAATTTATTTAGTCG-TCAAAACCACTGATTATTTGAAGTGACACTAT--ACT
gi|13 : caatttgtttTGGTATGGTCATAGTTGGCTTGTATTT---------ATGCTGAGCTG----T--TGTTTATGCATCATGTCTTAAATAGTTAAATGTATT----TAGTT-G-------------------TCAAAACCACTGATCA----AAGTAACACTGTTGACTG-T
gi|14 : caagttgttcATACTCTATTAACTAAAAAATCACAGATATCA-TGAAGTATT---GGT--ACTCCTACC-ATTGGTTAGAACTTC-AT-ATTTTTAAATCAAGGAATAAAA-T-----------------CTTATTAAGAGTGCTG-ATTac
gi|15 : ataCTCTACATTTGGCATGTGT-TTGAGTAA---ATATGCAAACAAAAAA-TGGGCAAGTA-GCCTTTATT-TTGAC-A--ATCAAGC
gi|16 : attgtagccgtgTACGGTACGTAG-TTGCACAA---ACACGCAAACA-AAAA-TAATCAAGAACGCCATTGTT-
gi|2 : AACCATAT------------------AAATACTCTTAAAGAATCTCCATATACACAATGACTTTGATTTCCAATC--GTATCGAAG-TATAACA--TAACT----GAGAATTCATTG-----TTTAC-T---T-CGAGAGATGATTGAC-------CAAAACAATTACCGA-AAAGTAAAGAATTCAA--CAAAAT----------GATCTAAGTGGGTTATCGATTTTTCA-TCTTGTAACAATTA-CCAAAAGTAAAGT-ATCAAACCA----TGTCCAACAACGATATTGGCGGGTA--ATTGGTTTTTCGTCTTTTCCATACGCTTGA-GTTTATATGAAAAA-GTTGTACACCAGTCAATGTTACTTTGAAAATGGTGTCGC----GTGCGCGAAATAA-ACA--------AA-AACA-AAC---AAATACTTTACTGGATTTTTTTTA-AAGTAACCT-ATT-GCAT-ACTC-CCAACACGGAATAATTGTGGAAAAGCA------CATTATTAAGCCATTGATA---AATGAACTGATTGAAAAAAATATAACAT---GTTTGGAG-AAAAAAGTAAAAAAAAAC-GACATGATGGACTTGCTGTCAATGACAAGACC-TTGGCTGAGTGGAAAGTAAAATATCAGTGGTTAGTCGTAAACAGAATTGAGG
gi|3 : CTGGTAATAATTAACAATAAGTAGAGTATTTGAATCA-AAATGTGTGAAAGCGA-ACTAG-ACTTGTTATTGATTATTTGTCTTATACAATCGCTTTATGTTTAT--GAAAAA-ATTATAAACCAGTCATCCTTATTTTAAAAATGGCGTTGC----ATGTGTGAAAA-A-ACATTGCAAGGAACAACA-AAC---AAAAACTTTACTCGATTATTTCAG-AAATAA-TTTAAT-TCAT-ACCTTGGAACATGTAGTAAATGTGGATAAGTGTAATACCAT--------------TACTCAATAAG----TT--AACAAAT-CAATGTCATGTT-----------ATGATAAGAAATTTGA--TGATCTGAATATT----ACGATAA-AACATTGACTGA-----------AATTTCTATGGTAAGCCTTCAACAGAATTGAGGGTGACAagga
gi|4 : cCACTGCAGATAAGGCATGTAT-TTGTGTAATTTATATATTAACA-AAAG-TGTTCAAGTATGCCTTTATT-TTGAA-ATTATCAAACGTTT------------------AACAACTCTCAAAGAAACCCAAAATTAGTAATTATTTTGATTTCCATAC--ATATTGAAG-ATTAATATTTAATTTTTAAAAAAATC--TGACCAATTTAA-TTCAT-TAAGAGTTAATTATCG------AGTA--AATTATTTA-TA-CCAAAGTA--TAG--CAAAATC---------AATATGGACAGATTATAAATTTTCTGTTCTTTTTCTAATT---AAAATGTATA-T-TTTGAATTA-A
gi|5 : CTAGATAAGGTACACAT-TTGCACAA---ATACGCAAAC-------------AGTA-GCCATTGTT-TTAAA-A--AGCAAAGGTAT------------------TAATACTCTCTTATAAACT-----TAC------ATTTTTATCTCCTAGC--ATATCAGAG-TTAAACG--ATGCT----GAG-ATT--TTG-----TT--C-T---TGTAA---ATCACTGACCATACCTGGTAATAATTAACAATAA-GTAGAGTATTTGAATCAAAATGTGTGAAAGCGAACTAGACTTGTTATTGATTATTTG-TCTTAT-ACAATtaaacaaacagtaaatcagtcagtcattttca
gi|6 : aATGTTCCTAATCAACTCATATTT--ATGTAAAATATGAAAATGATATTG-T--TTATGCAGCTTGTTTTA--TA-TTCACTGTCTT--AATAGTT-A-----------------ATTCAAAACCACTGGTCA----CAGGAATACTGT--ACTA---TGATCTGTTGCTTCGATATATTT--------TGCCG--TA----AT-TACTCTATTAATTCAAG-----------TTGCTGGAGTATT---G------------------GTCAGTACTCCTTT-ATTTTGAAAT
gi|7 : T--ACTAATTTGATCAGCTGCTTTGATATTTTACTCCCAAGTGCCGAGTA----A-ATACTCGGTTATTTCACA-----------ATC-TGGGATAATCAGGGTCAACTCCTGCAAATTTGTCAACACTCC-TTAATATTAGAATAAAGGAACAAAATT-CCCCATTTTGCAAAA----ATC-AGAGTGCTGCACTggtgtcagaggaaa
gi|8 : AGCACTCTAGATAAGGTGCGTAT-TTGTGTTA---TTATGCAAACA-AAAA-ATGCCAAGGACACTTTTATT-TTTAACA--ATCAAGCA-ATCAAATAGCGAAAAAAAAAAAAAA----AAAAAAAGCAACAAGCACTGAAAAACTTTCATTCCCACACATATATCAGAGTTATAACA--TTGC-----GAAGATCCATTG-----TTTAC-T---T-AAAtagtaacaaataatcttgttttttaagtataaatgaaaaat
gi|9 : tacGTAA---AAACGCATACA-AAAA-TGATTAAGTACGCATTTGTT-TTGAA-A--ATCAAGCGTAT------------------AAATACTCTAAAAGAATCTCCATGTATGCAATGATTTTGATTTCCAATC--GTATCAAAG-TAAAACG--TAACT----GAAAATTAGTTG-----TTTAC-T---T-TGGGAGATGATCGAC-------TGTAACAATTACCGA-AA-GTAAAGTATTTAA--CAAAAC----------Gacacggtgaca
Alignments
lowQualScore : 444444444444444444 11111 11111 111 22222222 11 4444444444 111 22 1 2222 11 1 1 2222 111 22222222222 1 111 1111 333 1 1 11111 99999999999999999999999999999 222 1 222 222222 1 1 55555555555 444444444 3333333 11 1 111 999999999999999999999 22222 11 22 44444444 33333333333 666666666666666 22222222 11 1 2 99999999999999999999999999 1
lowQualScore : 22 5 5 888 5 77 44 4 1 5 5 77 0 222222222222222222 1 1 3 3 33 77 66 3 22 77 5 22 77 22222 0 44 44444 1 5 000 5 1 5 99999999 0 8 8 1 0 11 3333333333 0 0 222 8 33 1 2 0 5555 0 7 6 1 88 0 3 7 3 0 1 1 0 0 1111 0 2 111 88888888888 0 777 1 1 0000 111 0 2 0 44444 6 2 44444444444444444444444444444 999 777 3 333 0 444444 3 7 1 6 6 3 66666666666 1 333 1 1 1 555555555 3 1111111 2 1 33 0 2 777 111111111111111111111 22222 11 33 3 88888888 00000000000 0 0 000000000000000 00000000 0 55 3 1 0 0 0 44 44444444444444444444444444 3
lowQualScore : .. . . ... . .. .. . . . . .. . .................. . . . . .. .. .. . .. .. . .. .. ..... . .. ..... . . ... . . . ........ . . . . . .. .......... . . ... . .. . . . .... . . . . .. . . . . . . . . . .... . . ... ........... . ... . . .... ... . . . ..... . . ............................. ... ... . ... . ...... . . . . . . ........... . ... . . . ......... . ....... . . .. . . ... ..................... ..... .. .. . ........ ........... . . ............... ........ . .. . . . . . .. .......................... .
lowQualScore : 77 7 3 888 0 00 11 5 4 0 7 99 2 111111111111111111 0 4 0 0 33 11 00 0 66 99 7 99 99 33333 1 33 33333 7 7 000 7 0 2 33333333 8 0 0 4 8 00 0000000000 2 2 222 8 22 2 5 0 6666 7 3 7 0 33 7 3 3 2 0 0 0 2 2 2222 2 5 000 22222222222 0 555 2 0 2222 555 0 5 0 55555 5 0 77777777777777777777777777777 333 333 3 333 7 777777 3 3 0 7 7 3 00000000000 0 555 0 0 0 222222222 2 8888888 5 0 88 0 5 000 888888888888888888888 22222 00 22 7 33333333 33333333333 8 8 555555555555555 88888888 8 88 0 2 0 0 2 33 77777777777777777777777777 3
consensus : AGCACTCTAGATAAGGTACGTAT-TTGCGTAA---ATACGCAAACA-AAAA-TGGTCAAGTACGCCTTTGTT-TTGAA-A--ATCAAGCGTAT------------------AAANACTCTNAAAGAANCTCCATGTACGCAATGATTTTGATTTCCAANC--GTATCGAAG-TNTAACG--TAACT----GAGAATTCATTG-----TTTAC-T---T-TAAGAGATGATTGAC-------NGTAACAATTACCGA-AA-GTAAAGTATTTAA--CAAAAT----------GATCTAGGCGGGTTATCGATTTTTCG-TCTTGTNACAATTA-CAAAAAGTAAAGT-TTCGAACCA-AA-TGTCCGACAGCGATATTGGCANTTA--ATCGGTTTTTCGTCTTTTCCATACGCTTGA-GTTTATATGAAAAA-GTTGTANACCAGTCAATGTTATTTTNAAAATGGCGTCGC----GTGCGCGAAAT-A-ACA----AA-----AACA-AAC---AAATACTTTACTNGATTATTTCGG-AAGTAANTTAAT-GCAT-ACC-C-GGAACACGGAATAAACGTGGAAAAGCG------CAT--------------TA---AATGAACCGATTG-AAAAAAT-CAA---CGTGTTCGGAG-AAAAAAGGA-AAAAAAATCGACATGATNTACATACTGTCAACGACAAGAAC-TTGGCTGA-TGGAAAGT-AAATTTCNATGGTTAGTCGTAAACAGAATTGAGGGTGACATGNTCNTAGTCGGCTNATATTTTAATGTAAAATGCTAAAATGATATTG-TGTTTATGCAGCNTGTTTTA--TA-TTCACTGTCTT--AATAGTT-A-----------------A-TCAAAACCACTGATCA----NAGTAACACTGT--ACTA-TTTGATCCGTTGCTTCGATATATTA--------TGCCG--TA----ATATACTCTATTAATTCAAA-----------TTA-TGGAGTATT---GGT--ACTCCTACAGATTTGTCAGTACTCC-TT-ATTTTGAAATCGAGGAATAAAA-T-CCCCACT---CAAAA-CTTATC-AGAGTGCTG-ACT
Reference ( family-5058 ) : AGCACTCTAGATAAGGTACGTAT-TTGCGTAA---ATACGCAAACA-AAAA-TGGTCAAGTACGCCTTTGTT-TTGAA-A--ATCAAGCGTAT------------------AAANACTCTNAAAGAANCTCCATGTACGCAATGATTTTGATTTCCAANC--GTATCGAAG-TNTAACG--TAACT----GAGAATTCATTG-----TTTAC-T---T-TAAGAGATGATTGAC-------NGTAACAATTACCGA-AA-GTAAAGTATTTAA--CAAAAT----------GATCTAGGCGGGTTATCGATTTTTCG-TCTTGTNACAATTA-CAAAAAGTAAAGT-TTCGAACCA-AA-TGTCCGACAGCGATATTGGCANTTA--ATCGGTTTTTCGTCTTTTCCATACGCTTGA-GTTTATATGAAAAA-GTTGTANACCAGTCAATGTTATTTTNAAAATGGCGTCGC----GTGCGCGAAAT-A-ACA----AA-----AACA-AAC---AAATACTTTACTNGATTATTTCGG-AAGTAA-TTAAT-GCAT-ACC-C-GGAACACGGAATAAACGTGGAAAAGCG------CAT--------------TA---AATGAACCGATTG-AAAAAAT-CAA---CGTGTTCGGAG-AAAAAAGGA-AAAAAAATCGACATGATNTACATACTGTCAACGACAAGAAC-TTGGCTGA-TGGAAAGT-AAATTTCNATGGTTAGTCGTAAACAGAATTGAGGGTGACATGNTCNTAGTCGGCTNATATTTTAATGTAAAATGCTAAAATGATATTG-TGTTTATGCAGCNTGTTTTA--TA-TTCACTGTCTT--AATAGTT-A-----------------A-TCAAAACCACTGATCA----NAGTAACACTGT--ACTA-TTTGATCCGTTGCTTCGATATATTA--------TGCCG--TA----ATATACTCTATTAATTCAAA-----------TTA-TGGAGTATT---GGT--ACTCCTACAGATTTGTCAGTACTCC-TT-ATTTTGAAATCGAGGAATAAAA-T-CCCCACT---CAAAA-CTTATC-AGAGTGCTG-ACT
gi|1 : AGCACTCTAGATAAGGTGTATATATTG-GTTA---ATACGCAAACA-GAA--TGATCAAGTACGCATATGTT-TTGAA-A--ATCAAGCGTAT------------------AAAAACTCTAAAAGAATCTCCATGTATGCAATGATTTTGATTTCCAATC--GTATCGAAG-TATAACG--TAACT----GAGAATTCATTG-----TTAAC-T---T-CAAGAGATGATTGAC-------AGTAACAA-TGCCGA-AA-GTGAAGAATTCAA--CAAAAT----------GATCCAGGCGGGCTATCGATTTTTAA-TCTTGTTACAATTACCAAAAAGTAAAGT-TTCAAACCACAA-TGTCCAACAGCGATATTGGCAATTA--ATCAGTTTTTCATCTTTTCCATACGCTGGA-GTTCATATG-AAAA-GTAGTACACCAGTCAATGTTATTTTCAAAATGGCTTAGC----GTTCGCTAAAT-ATACA----AA-----AACA-AAC---AAATACTTTACTGAATTATTTTGG-AAGTAA-TCAATGGCAT-ACC-CAGGAACACAGAATAAATGTGGAAAAGCA------CAT--------------TA---AATGAACCGATTG--AAAAAT-CCA---CGTGTTCAGAGAAAAAAAGGA-AAAAAAATCGACATGAATTACATACCGTCAACGACAAGGAC-TTGGCTGATTGAAAAGTCAAATTTCCATGGTTAGTTGTAAACAGAATTGAGGGCGACATGTTCCTAATCAACTAATATTTTAATGTAAAATATTAAAATGATATTGTTGTTTATGCAGCCCGTTTTA--TA-TTCACTGTCTT--AATAGTTAA-----------------A-TCAAAACCACTGATCA----CAGTAATACTGT--ACTACTTTGATTCTTTGCTTCGATATATTA--------TACCG--TAATTCATATACTCCATTAAGTCAAAC----------TTA-AGGAGTATT---GGT--ACTCCTACAGATTTGTCAGTACTTC-TTCATTTTGAAATTGAGGAGTAAAA-TACTCCACTGACTAAAACCTTATCTAGAGTGCTG-ACT
gi|10 : GCATTCCAGATAAGAT---------GCGTAA---ATATGTGAACA-AAAAATGGGCAAGTGCACATCTGATATTAAA-A--ATAAACCATTC------------------AGAGAC-----ACGA----TCAT--ACGAAATTATTTTGGTTTCCACAC--ATACTGAAG-TTGGATA--TATCC----GAGATTTCATTG-----TTTACTT---T-TAAAAAAT-----AC-------AGCAACAA
gi|11 : TGAAAAATATTATAAACAATTCAATGTTATTTTCAAAATGCCATCGCAGAGGTGAATCAAGT-A-AGA----AA-----AACATAACTAAAAACACTTTGCTTGATTATTTTGACAAGAAAGGGAAT-G-GTAACA-C-AGAAAAC-GAATTAACATTGA
gi|12 : tacGGGT---ATGGTCATAGTCGGCTAATACTTTA--------TGCTAAAA-------A-TGTTTATACAGCATGTTTTA--TA-TTCACT-CCTTTAAATAGTT-ATATAAATTTATTTAGTCG-TCAAAACCACTGATTATTTGAAGTGACACTAT--ACT
gi|13 : caatttgtttTGGTATGGTCATAGTTGGCTTGTATTT---------ATGCTGAGCTG----T--TGTTTATGCATCATGTCTTAAATAGTTAAATGTATT----TAGTT-G-------------------TCAAAACCACTGATCA----AAGTAACACTGTTGACTG-T
gi|14 : caagttgttcATACTCTATTAACTAAAAAATCACAGATATCA-TGAAGTATT---GGT--ACTCCTACC-ATTGGTTAGAACTTC-AT-ATTTTTAAATCAAGGAATAAAA-T-----------------CTTATTAAGAGTGCTG-ATTac
gi|15 : ataCTCTACATTTGGCATGTGT-TTGAGTAA---ATATGCAAACAAAAAA-TGGGCAAGTA-GCCTTTATT-TTGAC-A--ATCAAGC
gi|16 : attgtagccgtgTACGGTACGTAG-TTGCACAA---ACACGCAAACA-AAAA-TAATCAAGAACGCCATTGTT-
gi|2 : AACCATAT------------------AAATACTCTTAAAGAATCTCCATATACACAATGACTTTGATTTCCAATC--GTATCGAAG-TATAACA--TAACT----GAGAATTCATTG-----TTTAC-T---T-CGAGAGATGATTGAC-------CAAAACAATTACCGA-AAAGTAAAGAATTCAA--CAAAAT----------GATCTAAGTGGGTTATCGATTTTTCA-TCTTGTAACAATTA-CCAAAAGTAAAGT-ATCAAACCA----TGTCCAACAACGATATTGGCGGGTA--ATTGGTTTTTCGTCTTTTCCATACGCTTGA-GTTTATATGAAAAA-GTTGTACACCAGTCAATGTTACTTTGAAAATGGTGTCGC----GTGCGCGAAATAA-ACA----AA-----AACA-AAC---AAATACTTTACTGGATTTTTTTTA-AAGTAACCTATT-GCAT-ACT-C-CCAACACGGAATAATTGTGGAAAAGCA------CATTATTAAGCCATTGATA---AATGAACTGATTGAAAAAAATATAA---CATGTTTGGAG-AAAAAAGTA-AAAAAAAACGACATGATGGACTTGCTGTCAATGACAAGACC-TTGGCTGAGTGGAAAGTAAAATATCAGTGGTTAGTCGTAAACAGAATTGAGG
gi|3 : CTGGTAATAATTAACAATAAGTAGAGTATTTGAATCA-AAATGTGTGAAAGCGA-ACTAG-ACTTGTTATTGATTATTTGTCTTATACAATCGCTTTATGTTTAT--GAAAAA-ATTATAAACCAGTCATCCTTATTTTAAAAATGGCGTTGC----ATGTGTGAAAA-A-ACATTGCAAGGAACAACA-AAC---AAAAACTTTACTCGATTATTTCAG-AAATAATTTAAT-TCAT-ACCTT-GGAACATGTAGTAAATGTGGATAAGTGTAATACCAT--------------TACTCAATAA----GTT--AACAAAT-CAATGTCATGTT-----------ATGATAAGAAATTTG--ATGATCTGAATATT----ACGATAA-AACATTGACTG-----------AAATTTCTATGGTAAGCCTTCAACAGAATTGAGGGTGACAagga
gi|4 : cCACTGCAGATAAGGCATGTAT-TTGTGTAATTTATATATTAACA-AAAG-TGTTCAAGTATGCCTTTATT-TTGAA-ATTATCAAACGTTT------------------AACAACTCTCAAAGAAACCCAAAATTAGTAATTATTTTGATTTCCATAC--ATATTGAAG-ATTAATATTTAATTTTTAAAAAAATC--TGACCAATTTAA-TTCAT-TAAGAGTTAATTATCG------AGTA--AATTATTTA-TA-CCAAAGTA--TAG--CAAAATC---------AATATGGACAGATTATAAATTTTCTGTTCTTTTTCTAATT---AAAATGTATA-T-TTTGAATTA-A
gi|5 : CTAGATAAGGTACACAT-TTGCACAA---ATACGCAAAC-------------AGTA-GCCATTGTT-TTAAA-A--AGCAAAGGTAT------------------TAATACTCTCTTATAAACT-----TAC------ATTTTTATCTCCTAGC--ATATCAGAG-TTAAACG--ATGCT----GAG-ATT--TTG-----TT--C-T---TGTAA---ATCACTGACCATACCTGGTAATAATTAACAATAA-GTAGAGTATTTGAATCAAAATGTGTGAAAGCGAACTAGACTTGTTATTGATTATTTG-TCTTAT-ACAATtaaacaaacagtaaatcagtcagtcattttca
gi|6 : aATGTTCCTAATCAACTCATATTT--ATGTAAAATATGAAAATGATATTG-T--TTATGCAGCTTGTTTTA--TA-TTCACTGTCTT--AATAGTT-A-----------------ATTCAAAACCACTGGTCA----CAGGAATACTGT--ACTA---TGATCTGTTGCTTCGATATATTT--------TGCCG--TA----AT-TACTCTATTAATTCAAG-----------TTGCTGGAGTATT---G------------------GTCAGTACTCCTTT-ATTTTGAAAT
gi|7 : T--ACTAATTTGATCAGCTGCTTTGATATTTTACTCCCAAGTGCCGAGTA----A-ATACTCGGTTATTTCACA-----------ATC-TGGGATAATCAGGGTCAACTCCTGCAAATTTGTCAACACTCC-TTAATATTAGAATAAAGGAACAAAATT-CCCCATTTTGCAAAA----ATC-AGAGTGCTGCACTggtgtcagaggaaa
gi|8 : AGCACTCTAGATAAGGTGCGTAT-TTGTGTTA---TTATGCAAACA-AAAA-ATGCCAAGGACACTTTTATT-TTTAACA--ATCAAGCA-ATCAAATAGCGAAAAAAAAAAAAAA----AAAAAAAGCAACAAGCACTGAAAAACTTTCATTCCCACACATATATCAGAGTTATAACA--TTGC-----GAAGATCCATTG-----TTTAC-T---T-AAAtagtaacaaataatcttgttttttaagtataaatgaaaaat
gi|9 : tacGTAA---AAACGCATACA-AAAA-TGATTAAGTACGCATTTGTT-TTGAA-A--ATCAAGCGTAT------------------AAATACTCTAAAAGAATCTCCATGTATGCAATGATTTTGATTTCCAATC--GTATCAAAG-TAAAACG--TAACT----GAAAATTAGTTG-----TTTAC-T---T-TGGGAGATGATCGAC-------TGTAACAATTACCGA-AA-GTAAAGTATTTAA--CAAAAC----------Gacacggtgaca
Alignments
lowQualScore : 444444444444444444 11111 11111 111 22222222 11 4444444444 111 22 1 2222 11 1 1 2222 111 22222222222 1 111 1111 111 1 1 11111 99999999999999999999999999999 222 1 222 222222 1 1 55555555555 444444444 3333333 11 1 111 999999999999999999999 22222 11 22 44444444 33333333333 666666666666666 22222222 11 1 2 99999999999999999999999999 1
lowQualScore : 22 5 5 888 5 77 44 4 1 5 5 77 0 222222222222222222 1 1 3 3 33 77 66 3 22 77 888 77 22222 0 44 44444 1 5 000 5 1 5 99999999 0 8 8 1 0 11 3333333333 0 0 222 8 33 1 2 0 5555 0 7 6 1 88 0 3 7 3 0 1 1 0 0 1111 0 2 111 88888888888 0 777 1 1 0000 222 0 2 0 44444 6 2 44444444444444444444444444444 999 777 3 333 0 444444 3 7 1 6 6 3 66666666666 1 333 1 1 1 555555555 3 1111111 2 1 33 0 2 777 111111111111111111111 22222 11 33 3 88888888 00000000000 0 0 000000000000000 00000000 0 55 3 1 0 0 0 44 44444444444444444444444444 3
lowQualScore : .. . . ... . .. .. . . . . .. . .................. . . . . .. .. .. . .. .. ... .. ..... . .. ..... . . ... . . . ........ . . . . . .. .......... . . ... . .. . . . .... . . . . .. . . . . . . . . . .... . . ... ........... . ... . . .... ... . . . ..... . . ............................. ... ... . ... . ...... . . . . . . ........... . ... . . . ......... . ....... . . .. . . ... ..................... ..... .. .. . ........ ........... . . ............... ........ . .. . . . . . .. .......................... .
lowQualScore : 77 7 3 888 0 00 11 5 4 0 7 99 2 111111111111111111 0 4 0 0 33 11 00 0 66 99 666 99 33333 1 33 33333 7 7 000 7 0 2 33333333 8 0 0 4 8 00 0000000000 2 2 222 8 22 2 5 0 6666 7 3 7 0 33 7 3 3 2 0 0 0 2 2 2222 2 5 000 22222222222 0 555 2 0 2222 222 0 5 0 55555 5 0 77777777777777777777777777777 333 333 3 333 7 777777 3 3 0 7 7 3 00000000000 0 555 0 0 0 222222222 2 8888888 5 0 88 0 5 000 888888888888888888888 22222 00 22 7 33333333 33333333333 8 8 555555555555555 88888888 8 88 0 2 0 0 2 33 77777777777777777777777777 3
consensus : AGCACTCTAGATAAGGTACGTAT-TTGCGTAA---ATACGCAAACA-AAAA-TGGTCAAGTACGCCTTTGTT-TTGAA-A--ATCAAGCGTAT------------------AAANACTCTNAAAGAANCTCCATGTACGCAATGATTTTGATTTCCAANCGTAT--CGAAGTN-TAACG--TAACT----GAGAATTCATTG-----TTTAC-T---T-TAAGAGATGATTGAC-------NGTAACAATTACCGA-AA-GTAAAGTATTTAA--CAAAAT----------GATCTAGGCGGGTTATCGATTTTTCG-TCTTGTNACAATTA-CAAAAAGTAAAGT-TTCGAACCA-AA-TGTCCGACAGCGATATTGGCANTTA--ATCGGTTTTTCGTCTTTTCCATACGCTTGA-GTTTATATGAAAAA-GTTGTANACCAGTCAATGTTATTTTNAAAATGGCGTCGC----GTGCGCGAAAT-A-ACA----AA-----AACA-AAC---AAATACTTTACTNGATTATTTCGG-AAGTAANTTAAT-GCAT-ACC-C-GGAACACGGAATAAACGTGGAAAAGCG------CAT--------------TA---AATGAACCGATTG-AAAAAAT-CAA---CGTGTTCGGAG-AAAAAAGGA-AAAAAAATCGACATGATNTACATACTGTCAACGACAAGAAC-TTGGCTGA-TGGAAAGT-AAATTTCNATGGTTAGTCGTAAACAGAATTGAGGGTGACATGNTCNTAGTCGGCTNATATTTTAATGTAAAATGCTAAAATGATATTG-TGTTTATGCAGCNTGTTTTA--TA-TTCACTGTCTT--AATAGTT-A-----------------A-TCAAAACCACTGATCA----NAGTAACACTGT--ACTA-TTTGATCCGTTGCTTCGATATATTA--------TGCCG--TA----ATATACTCTATTAATTCAAA-----------TTA-TGGAGTATT---GGT--ACTCCTACAGATTTGTCAGTACTCC-TT-ATTTTGAAATCGAGGAATAAAA-T-CCCCACT---CAAAA-CTTATC-AGAGTGCTG-ACT
Reference ( family-5058 ) : AGCACTCTAGATAAGGTACGTAT-TTGCGTAA---ATACGCAAACA-AAAA-TGGTCAAGTACGCCTTTGTT-TTGAA-A--ATCAAGCGTAT------------------AAANACTCTNAAAGAANCTCCATGTACGCAATGATTTTGATTTCCAANCGTAT--CGAAGTN-TAACG--TAACT----GAGAATTCATTG-----TTTAC-T---T-TAAGAGATGATTGAC-------NGTAACAATTACCGA-AA-GTAAAGTATTTAA--CAAAAT----------GATCTAGGCGGGTTATCGATTTTTCG-TCTTGTNACAATTA-CAAAAAGTAAAGT-TTCGAACCA-AA-TGTCCGACAGCGATATTGGCANTTA--ATCGGTTTTTCGTCTTTTCCATACGCTTGA-GTTTATATGAAAAA-GTTGTANACCAGTCAATGTTATTTTNAAAATGGCGTCGC----GTGCGCGAAAT-A-ACA----AA-----AACA-AAC---AAATACTTTACTNGATTATTTCGG-AAGTAANTTAAT-GCAT-ACC-C-GGAACACGGAATAAACGTGGAAAAGCG------CAT--------------TA---AATGAACCGATTG-AAAAAAT-CAA---CGTGTTCGGAG-AAAAAAGGA-AAAAAAATCGACATGATNTACATACTGTCAACGACAAGAAC-TTGGCTGA-TGGAAAGT-AAATTTCNATGGTTAGTCGTAAACAGAATTGAGGGTGACATGNTCNTAGTCGGCTNATATTTTAATGTAAAATGCTAAAATGATATTG-TGTTTATGCAGCNTGTTTTA--TA-TTCACTGTCTT--AATAGTT-A-----------------A-TCAAAACCACTGATCA----NAGTAACACTGT--ACTA-TTTGATCCGTTGCTTCGATATATTA--------TGCCG--TA----ATATACTCTATTAATTCAAA-----------TTA-TGGAGTATT---GGT--ACTCCTACAGATTTGTCAGTACTCC-TT-ATTTTGAAATCGAGGAATAAAA-T-CCCCACT---CAAAA-CTTATC-AGAGTGCTG-ACT
gi|1 : AGCACTCTAGATAAGGTGTATATATTG-GTTA---ATACGCAAACA-GAA--TGATCAAGTACGCATATGTT-TTGAA-A--ATCAAGCGTAT------------------AAAAACTCTAAAAGAATCTCCATGTATGCAATGATTTTGATTTCCAATCGTAT--CGAAGTA-TAACG--TAACT----GAGAATTCATTG-----TTAAC-T---T-CAAGAGATGATTGAC-------AGTAACAA-TGCCGA-AA-GTGAAGAATTCAA--CAAAAT----------GATCCAGGCGGGCTATCGATTTTTAA-TCTTGTTACAATTACCAAAAAGTAAAGT-TTCAAACCACAA-TGTCCAACAGCGATATTGGCAATTA--ATCAGTTTTTCATCTTTTCCATACGCTGGA-GTTCATATG-AAAA-GTAGTACACCAGTCAATGTTATTTTCAAAATGGCTTAGC----GTTCGCTAAAT-ATACA----AA-----AACA-AAC---AAATACTTTACTGAATTATTTTGG-AAGTAA-TCAATGGCAT-ACC-CAGGAACACAGAATAAATGTGGAAAAGCA------CAT--------------TA---AATGAACCGATTG--AAAAAT-CCA---CGTGTTCAGAGAAAAAAAGGA-AAAAAAATCGACATGAATTACATACCGTCAACGACAAGGAC-TTGGCTGATTGAAAAGTCAAATTTCCATGGTTAGTTGTAAACAGAATTGAGGGCGACATGTTCCTAATCAACTAATATTTTAATGTAAAATATTAAAATGATATTGTTGTTTATGCAGCCCGTTTTA--TA-TTCACTGTCTT--AATAGTTAA-----------------A-TCAAAACCACTGATCA----CAGTAATACTGT--ACTACTTTGATTCTTTGCTTCGATATATTA--------TACCG--TAATTCATATACTCCATTAAGTCAAAC----------TTA-AGGAGTATT---GGT--ACTCCTACAGATTTGTCAGTACTTC-TTCATTTTGAAATTGAGGAGTAAAA-TACTCCACTGACTAAAACCTTATCTAGAGTGCTG-ACT
gi|10 : GCATTCCAGATAAGAT---------GCGTAA---ATATGTGAACA-AAAAATGGGCAAGTGCACATCTGATATTAAA-A--ATAAACCATTC------------------AGAGAC-----ACGA----TCAT--ACGAAATTATTTTGGTTTCCACACATAC--TGAAGTT-GGATA--TATCC----GAGATTTCATTG-----TTTACTT---T-TAAAAAAT-----AC-------AGCAACAA
gi|11 : TGAAAAATATTATAAACAATTCAATGTTATTTTCAAAATGCCATCGCAGAGGTGAATCAAGT-A-AGA----AA-----AACATAACTAAAAACACTTTGCTTGATTATTTTGACAAGAAAGGGAAT-G-GTAACA-C-AGAAAAC-GAATTAACATTGA
gi|12 : tacGGGT---ATGGTCATAGTCGGCTAATACTTTA--------TGCTAAAA-------A-TGTTTATACAGCATGTTTTA--TA-TTCACT-CCTTTAAATAGTT-ATATAAATTTATTTAGTCG-TCAAAACCACTGATTATTTGAAGTGACACTAT--ACT
gi|13 : caatttgtttTGGTATGGTCATAGTTGGCTTGTATTT---------ATGCTGAGCTG----T--TGTTTATGCATCATGTCTTAAATAGTTAAATGTATT----TAGTT-G-------------------TCAAAACCACTGATCA----AAGTAACACTGTTGACTG-T
gi|14 : caagttgttcATACTCTATTAACTAAAAAATCACAGATATCA-TGAAGTATT---GGT--ACTCCTACC-ATTGGTTAGAACTTC-AT-ATTTTTAAATCAAGGAATAAAA-T-----------------CTTATTAAGAGTGCTG-ATTac
gi|15 : ataCTCTACATTTGGCATGTGT-TTGAGTAA---ATATGCAAACAAAAAA-TGGGCAAGTA-GCCTTTATT-TTGAC-A--ATCAAGC
gi|16 : attgtagccgtgTACGGTACGTAG-TTGCACAA---ACACGCAAACA-AAAA-TAATCAAGAACGCCATTGTT-
gi|2 : AACCATAT------------------AAATACTCTTAAAGAATCTCCATATACACAATGACTTTGATTTCCAATCGTAT--CGAAGTA-TAACA--TAACT----GAGAATTCATTG-----TTTAC-T---T-CGAGAGATGATTGAC-------CAAAACAATTACCGA-AAAGTAAAGAATTCAA--CAAAAT----------GATCTAAGTGGGTTATCGATTTTTCA-TCTTGTAACAATTA-CCAAAAGTAAAGT-ATCAAACCA----TGTCCAACAACGATATTGGCGGGTA--ATTGGTTTTTCGTCTTTTCCATACGCTTGA-GTTTATATGAAAAA-GTTGTACACCAGTCAATGTTACTTTGAAAATGGTGTCGC----GTGCGCGAAATAA-ACA----AA-----AACA-AAC---AAATACTTTACTGGATTTTTTTTA-AAGTAACCTATT-GCAT-ACT-C-CCAACACGGAATAATTGTGGAAAAGCA------CATTATTAAGCCATTGATA---AATGAACTGATTGAAAAAAATATAA---CATGTTTGGAG-AAAAAAGTA-AAAAAAAACGACATGATGGACTTGCTGTCAATGACAAGACC-TTGGCTGAGTGGAAAGTAAAATATCAGTGGTTAGTCGTAAACAGAATTGAGG
gi|3 : CTGGTAATAATTAACAATAAGTAGAGTATTTGAATCA-AAATGTGTGAAAGCGA-ACTAG-ACTTGTTATTGATTATTTGTCTTATACAATCGCTTTATGTTTAT--GAAAAA-ATTATAAACCAGTCATCCTTATTTTAAAAATGGCGTTGC----ATGTGTGAAAA-A-ACATTGCAAGGAACAACA-AAC---AAAAACTTTACTCGATTATTTCAG-AAATAATTTAAT-TCAT-ACCTT-GGAACATGTAGTAAATGTGGATAAGTGTAATACCAT--------------TACTCAATAA----GTT--AACAAAT-CAATGTCATGTT-----------ATGATAAGAAATTTG--ATGATCTGAATATT----ACGATAA-AACATTGACTG-----------AAATTTCTATGGTAAGCCTTCAACAGAATTGAGGGTGACAagga
gi|4 : cCACTGCAGATAAGGCATGTAT-TTGTGTAATTTATATATTAACA-AAAG-TGTTCAAGTATGCCTTTATT-TTGAA-ATTATCAAACGTTT------------------AACAACTCTCAAAGAAACCCAAAATTAGTAATTATTTTGATTTCCATACATAT--TGAAGAT-TAATATTTAATTTTTAAAAAAATC--TGACCAATTTAA-TTCAT-TAAGAGTTAATTATCG------AGTA--AATTATTTA-TA-CCAAAGTA--TAG--CAAAATC---------AATATGGACAGATTATAAATTTTCTGTTCTTTTTCTAATT---AAAATGTATA-T-TTTGAATTA-A
gi|5 : CTAGATAAGGTACACAT-TTGCACAA---ATACGCAAAC-------------AGTA-GCCATTGTT-TTAAA-A--AGCAAAGGTAT------------------TAATACTCTCTTATAAACT-----TAC------ATTTTTATCTCCTAGCATAT--CAGAGTT-AAACG--ATGCT----GAG-ATT--TTG-----TT--C-T---TGTAA---ATCACTGACCATACCTGGTAATAATTAACAATAA-GTAGAGTATTTGAATCAAAATGTGTGAAAGCGAACTAGACTTGTTATTGATTATTTG-TCTTAT-ACAATtaaacaaacagtaaatcagtcagtcattttca
gi|6 : aATGTTCCTAATCAACTCATATTT--ATGTAAAATATGAAAATGATATTG-T--TTATGCAGCTTGTTTTA--TA-TTCACTGTCTT--AATAGTT-A-----------------ATTCAAAACCACTGGTCA----CAGGAATACTGT--ACTA---TGATCTGTTGCTTCGATATATTT--------TGCCG--TA----AT-TACTCTATTAATTCAAG-----------TTGCTGGAGTATT---G------------------GTCAGTACTCCTTT-ATTTTGAAAT
gi|7 : T--ACTAATTTGATCAGCTGCTTTGATATTTTACTCCCAAGTGCCGAGTA----A-ATACTCGGTTATTTCACA-----------ATC-TGGGATAATCAGGGTCAACTCCTGCAAATTTGTCAACACTCC-TTAATATTAGAATAAAGGAACAAAATT-CCCCATTTTGCAAAA----ATC-AGAGTGCTGCACTggtgtcagaggaaa
gi|8 : AGCACTCTAGATAAGGTGCGTAT-TTGTGTTA---TTATGCAAACA-AAAA-ATGCCAAGGACACTTTTATT-TTTAACA--ATCAAGCA-ATCAAATAGCGAAAAAAAAAAAAAA----AAAAAAAGCAACAAGCACTGAAAAACTTTCATTCCCACACATATATCAGAGTTATAACA--TTGC-----GAAGATCCATTG-----TTTAC-T---T-AAAtagtaacaaataatcttgttttttaagtataaatgaaaaat
gi|9 : tacGTAA---AAACGCATACA-AAAA-TGATTAAGTACGCATTTGTT-TTGAA-A--ATCAAGCGTAT------------------AAATACTCTAAAAGAATCTCCATGTATGCAATGATTTTGATTTCCAATCGTAT--CAAAGTA-AAACG--TAACT----GAAAATTAGTTG-----TTTAC-T---T-TGGGAGATGATCGAC-------TGTAACAATTACCGA-AA-GTAAAGTATTTAA--CAAAAC----------Gacacggtgaca
Alignments
lowQualScore : 444444444444444444 11111 11111 111 22222222 11 4444444444 111 22 1 2222 11 1 1 2222 111 22222222222 1 111 1111 111 1 1 11111 99999999999999999999999999999 222 1 222 222222 1 1 55555555555 444444444 3333333 11 1 111 999999999999999999999 22222 11 22 44444444 33333333333 666666666666666 22222222 11 1 2 99999999999999999999999999 1
lowQualScore : 22 5 5 888 5 77 44 4 1 5 5 77 0 222222222222222222 1 1 3 3 33 77 66 3 22 77 888 77 22222 0 44 44444 1 5 000 5 1 5 99999999 0 8 8 1 0 11 3333333333 0 0 222 8 33 1 2 0 5555 0 7 6 1 88 0 3 7 3 0 1 1 0 0 1111 0 2 111 88888888888 0 777 1 1 0000 222 0 2 0 44444 6 2 44444444444444444444444444444 999 777 3 333 0 444444 3 7 1 6 6 3 66666666666 1 333 1 1 1 555555555 3 1111111 2 1 33 0 2 777 111111111111111111111 22222 11 33 3 88888888 00000000000 0 0 000000000000000 00000000 0 55 3 1 0 0 0 44 44444444444444444444444444 3
lowQualScore : .. . . ... . .. .. . . . . .. . .................. . . . . .. .. .. . .. .. ... .. ..... . .. ..... . . ... . . . ........ . . . . . .. .......... . . ... . .. . . . .... . . . . .. . . . . . . . . . .... . . ... ........... . ... . . .... ... . . . ..... . . ............................. ... ... . ... . ...... . . . . . . ........... . ... . . . ......... . ....... . . .. . . ... ..................... ..... .. .. . ........ ........... . . ............... ........ . .. . . . . . .. .......................... .
lowQualScore : 77 7 3 888 0 00 11 5 4 0 7 99 2 111111111111111111 0 4 0 0 33 11 00 0 66 99 666 99 33333 1 33 33333 7 7 000 7 0 2 33333333 8 0 0 4 8 00 0000000000 2 2 222 8 22 2 5 0 6666 7 3 7 0 33 7 3 3 2 0 0 0 2 2 2222 2 5 000 22222222222 0 555 2 0 2222 222 0 5 0 55555 5 0 77777777777777777777777777777 333 333 3 333 7 777777 3 3 0 7 7 3 00000000000 0 555 0 0 0 222222222 2 8888888 5 0 88 0 5 000 888888888888888888888 22222 00 22 7 33333333 33333333333 8 8 555555555555555 88888888 8 88 0 2 0 0 2 33 77777777777777777777777777 3
consensus : AGCACTCTAGATAAGGTACGTAT-TTGCGTAA---ATACGCAAACA-AAAA-TGGTCAAGTACGCCTTTGTT-TTGAA-A--ATCAAGCGTAT------------------AAANACTCTNAAAGAANCTCCATGTACGCAATGATTTTGATTTCCAANCGTAT--CGAAGTN-TAACG--TAACT----GAGAATTCATTG-----TTTAC-T---T-TAAGAGATGATTGAC-------NGTAACAATTACCGA-AA-GTAAAGTATTTAA--CAAAAT----------GATCTAGGCGGGTTATCGATTTTTCG-TCTTGTNACAATTA-CAAAAAGTAAAGT-TTCGAACCA-AA-TGTCCGACAGCGATATTGGCANTTA--ATCGGTTTTTCGTCTTTTCCATACGCTTGA-GTTTATATGAAAAA-GTTGTANACCAGTCAATGTTATTTTNAAAATGGCGTCGC----GTGCGCGAAAT-A-ACA----AA-----AACA-AAC---AAATACTTTACTNGATTATTTCGG-AAGTAANTTAAT-GCAT-ACC-C-GGAACACGGAATAAACGTGGAAAAGCG------CAT--------------TA---AATGAACCGATTG-AAAAAAT-CAA---CGTGTTCGGAG-AAAAAAGGA-AAAAAAATCGACATGATNTACATACTGTCAACGACAAGAAC-TTGGCTGA-TGGAAAGT-AAATTTCNATGGTTAGTCGTAAACAGAATTGAGGGTGACATGNTCNTAGTCGGCTNATATTTTAATGTAAAATGCTAAAATGATATTG-TGTTTATGCAGCNTGTTTTA--TA-TTCACTGTCTT--AATAGTT-A-----------------A-TCAAAACCACTGATCA----NAGTAACACTGT--ACTA-TTTGATCCGTTGCTTCGATATATTA--------TGCCG--TA----ATATACTCTATTAATTCAAA-----------TTA-TGGAGTATT---GGT--ACTCCTACAGATTTGTCAGTACTCC-TT-ATTTTGAAATCGAGGAATAAAA-T-CCCCACT---CAAAA-CTTATC-AGAGTGCTG-ACT
Reference ( family-5058 ) : AGCACTCTAGATAAGGTACGTAT-TTGCGTAA---ATACGCAAACA-AAAA-TGGTCAAGTACGCCTTTGTT-TTGAA-A--ATCAAGCGTAT------------------AAANACTCTNAAAGAANCTCCATGTACGCAATGATTTTGATTTCCAANCGTAT--CGAAGTN-TAACG--TAACT----GAGAATTCATTG-----TTTAC-T---T-TAAGAGATGATTGAC-------NGTAACAATTACCGA-AA-GTAAAGTATTTAA--CAAAAT----------GATCTAGGCGGGTTATCGATTTTTCG-TCTTGTNACAATTA-CAAAAAGTAAAGT-TTCGAACCA-AA-TGTCCGACAGCGATATTGGCANTTA--ATCGGTTTTTCGTCTTTTCCATACGCTTGA-GTTTATATGAAAAA-GTTGTANACCAGTCAATGTTATTTTNAAAATGGCGTCGC----GTGCGCGAAAT-A-ACA----AA-----AACA-AAC---AAATACTTTACTNGATTATTTCGG-AAGTAANTTAAT-GCAT-ACC-C-GGAACACGGAATAAACGTGGAAAAGCG------CAT--------------TA---AATGAACCGATTG-AAAAAAT-CAA---CGTGTTCGGAG-AAAAAAGGA-AAAAAAATCGACATGATNTACATACTGTCAACGACAAGAAC-TTGGCTGA-TGGAAAGT-AAATTTCNATGGTTAGTCGTAAACAGAATTGAGGGTGACATGNTCNTAGTCGGCTNATATTTTAATGTAAAATGCTAAAATGATATTG-TGTTTATGCAGCNTGTTTTA--TA-TTCACTGTCTT--AATAGTT-A-----------------A-TCAAAACCACTGATCA----NAGTAACACTGT--ACTA-TTTGATCCGTTGCTTCGATATATTA--------TGCCG--TA----ATATACTCTATTAATTCAAA-----------TTA-TGGAGTATT---GGT--ACTCCTACAGATTTGTCAGTACTCC-TT-ATTTTGAAATCGAGGAATAAAA-T-CCCCACT---CAAAA-CTTATC-AGAGTGCTG-ACT
gi|1 : AGCACTCTAGATAAGGTGTATATATTG-GTTA---ATACGCAAACA-GAA--TGATCAAGTACGCATATGTT-TTGAA-A--ATCAAGCGTAT------------------AAAAACTCTAAAAGAATCTCCATGTATGCAATGATTTTGATTTCCAATCGTAT--CGAAGTA-TAACG--TAACT----GAGAATTCATTG-----TTAAC-T---T-CAAGAGATGATTGAC-------AGTAACAA-TGCCGA-AA-GTGAAGAATTCAA--CAAAAT----------GATCCAGGCGGGCTATCGATTTTTAA-TCTTGTTACAATTACCAAAAAGTAAAGT-TTCAAACCACAA-TGTCCAACAGCGATATTGGCAATTA--ATCAGTTTTTCATCTTTTCCATACGCTGGA-GTTCATATG-AAAA-GTAGTACACCAGTCAATGTTATTTTCAAAATGGCTTAGC----GTTCGCTAAAT-ATACA----AA-----AACA-AAC---AAATACTTTACTGAATTATTTTGG-AAGTAA-TCAATGGCAT-ACC-CAGGAACACAGAATAAATGTGGAAAAGCA------CAT--------------TA---AATGAACCGATTG--AAAAAT-CCA---CGTGTTCAGAGAAAAAAAGGA-AAAAAAATCGACATGAATTACATACCGTCAACGACAAGGAC-TTGGCTGATTGAAAAGTCAAATTTCCATGGTTAGTTGTAAACAGAATTGAGGGCGACATGTTCCTAATCAACTAATATTTTAATGTAAAATATTAAAATGATATTGTTGTTTATGCAGCCCGTTTTA--TA-TTCACTGTCTT--AATAGTTAA-----------------A-TCAAAACCACTGATCA----CAGTAATACTGT--ACTACTTTGATTCTTTGCTTCGATATATTA--------TACCG--TAATTCATATACTCCATTAAGTCAAAC----------TTA-AGGAGTATT---GGT--ACTCCTACAGATTTGTCAGTACTTC-TTCATTTTGAAATTGAGGAGTAAAA-TACTCCACTGACTAAAACCTTATCTAGAGTGCTG-ACT
gi|10 : GCATTCCAGATAAGAT---------GCGTAA---ATATGTGAACA-AAAAATGGGCAAGTGCACATCTGATATTAAA-A--ATAAACCATTC------------------AGAGAC-----ACGA----TCAT--ACGAAATTATTTTGGTTTCCACACATAC--TGAAGTT-GGATA--TATCC----GAGATTTCATTG-----TTTACTT---T-TAAAAAAT-----AC-------AGCAACAA
gi|11 : TGAAAAATATTATAAACAATTCAATGTTATTTTCAAAATGCCATCGCAGAGGTGAATCAAGT-A-AGA----AA-----AACATAACTAAAAACACTTTGCTTGATTATTTTGACAAGAAAGGGAAT-G-GTAACA-C-AGAAAAC-GAATTAACATTGA
gi|12 : tacGGGT---ATGGTCATAGTCGGCTAATACTTTA--------TGCTAAAA-------A-TGTTTATACAGCATGTTTTA--TA-TTCACT-CCTTTAAATAGTT-ATATAAATTTATTTAGTCG-TCAAAACCACTGATTATTTGAAGTGACACTAT--ACT
gi|13 : caatttgtttTGGTATGGTCATAGTTGGCTTGTATTT---------ATGCTGAGCTG----T--TGTTTATGCATCATGTCTTAAATAGTTAAATGTATT----TAGTT-G-------------------TCAAAACCACTGATCA----AAGTAACACTGTTGACTG-T
gi|14 : caagttgttcATACTCTATTAACTAAAAAATCACAGATATCA-TGAAGTATT---GGT--ACTCCTACC-ATTGGTTAGAACTTC-AT-ATTTTTAAATCAAGGAATAAAA-T-----------------CTTATTAAGAGTGCTG-ATTac
gi|15 : ataCTCTACATTTGGCATGTGT-TTGAGTAA---ATATGCAAACAAAAAA-TGGGCAAGTA-GCCTTTATT-TTGAC-A--ATCAAGC
gi|16 : attgtagccgtgTACGGTACGTAG-TTGCACAA---ACACGCAAACA-AAAA-TAATCAAGAACGCCATTGTT-
gi|2 : AACCATAT------------------AAATACTCTTAAAGAATCTCCATATACACAATGACTTTGATTTCCAATCGTAT--CGAAGTA-TAACA--TAACT----GAGAATTCATTG-----TTTAC-T---T-CGAGAGATGATTGAC-------CAAAACAATTACCGA-AAAGTAAAGAATTCAA--CAAAAT----------GATCTAAGTGGGTTATCGATTTTTCA-TCTTGTAACAATTA-CCAAAAGTAAAGT-ATCAAACCA----TGTCCAACAACGATATTGGCGGGTA--ATTGGTTTTTCGTCTTTTCCATACGCTTGA-GTTTATATGAAAAA-GTTGTACACCAGTCAATGTTACTTTGAAAATGGTGTCGC----GTGCGCGAAATAA-ACA----AA-----AACA-AAC---AAATACTTTACTGGATTTTTTTTA-AAGTAACCTATT-GCAT-ACT-C-CCAACACGGAATAATTGTGGAAAAGCA------CATTATTAAGCCATTGATA---AATGAACTGATTGAAAAAAATATAA---CATGTTTGGAG-AAAAAAGTA-AAAAAAAACGACATGATGGACTTGCTGTCAATGACAAGACC-TTGGCTGAGTGGAAAGTAAAATATCAGTGGTTAGTCGTAAACAGAATTGAGG
gi|3 : CTGGTAATAATTAACAATAAGTAGAGTATTTGAATCA-AAATGTGTGAAAGCGA-ACTAG-ACTTGTTATTGATTATTTGTCTTATACAATCGCTTTATGTTTAT--GAAAAA-ATTATAAACCAGTCATCCTTATTTTAAAAATGGCGTTGC----ATGTGTGAAAA-A-ACATTGCAAGGAACAACA-AAC---AAAAACTTTACTCGATTATTTCAG-AAATAATTTAAT-TCAT-ACCTT-GGAACATGTAGTAAATGTGGATAAGTGTAATACCAT--------------TACTCAATAA----GTT--AACAAAT-CAATGTCATGTT-----------ATGATAAGAAATTTG--ATGATCTGAATATT----ACGATAA-AACATTGACTG-----------AAATTTCTATGGTAAGCCTTCAACAGAATTGAGGGTGACAagga
gi|4 : cCACTGCAGATAAGGCATGTAT-TTGTGTAATTTATATATTAACA-AAAG-TGTTCAAGTATGCCTTTATT-TTGAA-ATTATCAAACGTTT------------------AACAACTCTCAAAGAAACCCAAAATTAGTAATTATTTTGATTTCCATACATAT--TGAAGAT-TAATATTTAATTTTTAAAAAAATC--TGACCAATTTAA-TTCAT-TAAGAGTTAATTATCG------AGTA--AATTATTTA-TA-CCAAAGTA--TAG--CAAAATC---------AATATGGACAGATTATAAATTTTCTGTTCTTTTTCTAATT---AAAATGTATA-T-TTTGAATTA-A
gi|5 : CTAGATAAGGTACACAT-TTGCACAA---ATACGCAAAC-------------AGTA-GCCATTGTT-TTAAA-A--AGCAAAGGTAT------------------TAATACTCTCTTATAAACT-----TAC------ATTTTTATCTCCTAGCATAT--CAGAGTT-AAACG--ATGCT----GAG-ATT--TTG-----TT--C-T---TGTAA---ATCACTGACCATACCTGGTAATAATTAACAATAA-GTAGAGTATTTGAATCAAAATGTGTGAAAGCGAACTAGACTTGTTATTGATTATTTG-TCTTAT-ACAATtaaacaaacagtaaatcagtcagtcattttca
gi|6 : aATGTTCCTAATCAACTCATATTT--ATGTAAAATATGAAAATGATATTG-T--TTATGCAGCTTGTTTTA--TA-TTCACTGTCTT--AATAGTT-A-----------------ATTCAAAACCACTGGTCA----CAGGAATACTGT--ACTA---TGATCTGTTGCTTCGATATATTT--------TGCCG--TA----AT-TACTCTATTAATTCAAG-----------TTGCTGGAGTATT---G------------------GTCAGTACTCCTTT-ATTTTGAAAT
gi|7 : T--ACTAATTTGATCAGCTGCTTTGATATTTTACTCCCAAGTGCCGAGTA----A-ATACTCGGTTATTTCACA-----------ATC-TGGGATAATCAGGGTCAACTCCTGCAAATTTGTCAACACTCC-TTAATATTAGAATAAAGGAACAAAATT-CCCCATTTTGCAAAA----ATC-AGAGTGCTGCACTggtgtcagaggaaa
gi|8 : AGCACTCTAGATAAGGTGCGTAT-TTGTGTTA---TTATGCAAACA-AAAA-ATGCCAAGGACACTTTTATT-TTTAACA--ATCAAGCA-ATCAAATAGCGAAAAAAAAAAAAAA----AAAAAAAGCAACAAGCACTGAAAAACTTTCATTCCCACACATATATCAGAGTTATAACA--TTGC-----GAAGATCCATTG-----TTTAC-T---T-AAAtagtaacaaataatcttgttttttaagtataaatgaaaaat
gi|9 : tacGTAA---AAACGCATACA-AAAA-TGATTAAGTACGCATTTGTT-TTGAA-A--ATCAAGCGTAT------------------AAATACTCTAAAAGAATCTCCATGTATGCAATGATTTTGATTTCCAATCGTAT--CAAAGTA-AAACG--TAACT----GAAAATTAGTTG-----TTTAC-T---T-TGGGAGATGATCGAC-------TGTAACAATTACCGA-AA-GTAAAGTATTTAA--CAAAAC----------Gacacggtgaca
blockSeqs : AT . C TTT A AA GG C A A C TT CAAATAGCGAAAAAAAAA G T T T TC TA GA T CA AT TAT TT TTTTA CA ACCAA T T TCA G A G CATACCTG T A A AT GTGTGAAAGC TGT A AA A G A AAA T C G TT T A A T A C AGAG C AA TTGCAAGGAAC T TAA C T TGAC GGG . C A CTTG G C ACATTATTAAGCCATTGATA ACT GAA A TGT TGGAG T A G G G A AGTGGAAAGTA A GGT G A A ATGTAAA T ATATTG G A AA G G TAA ATATAAATTTATTTAGTCG TTTGA TG AT T CTCCCAAG AGTAAA AATCACAGATATCA CAGGGTCA AA G A T A CA TTCCCCATTTTGCAAAAATC C
blockSeqs : AC . A . . A GG C C . . . . T T C A CC AA AC G AT . TG . C CA . T . . . G A GA . . T . C CA A A G G . . . . C . . . A . C G . G A AA . . T G TTA CCT . C . ACA G T GTAATACCATTACTC . A . . . . . C . . . . T GAC G A T TA T A G A . . G A AAT A . T A . TAAT TTGC GGT C T T . . AA TCTTATTA .
blockSeqs : AT . C . . A AT T C . . . . A T C A AA AG GT T TA . AT . T CA . T . . . G C A . . T . . TG T . T . . A . A A . G A AA . . A C CAG TTT . . . TCC . T . T C C . . T . T . . . . G C . . ATC G . . C . .
blockSeqs : AC . T . . G TT C C . . . . T T A G TC TG TG A AG . TT . T AG . T . . . G G C . . T . . . .
blockSeqs : GC . C . . A GC C C . . . . A . A T T T GC G CA . TA . T C . T . . . . . T
blockSeqs : . . T . . A AT . T . . . . T . . . T . . . AT . AA . . . . . . . .
blockSeqs : . . . . . A .
blockSeqCons : A*
originalCons : AGCACTCTAGATAAGGTACGTAT-TTGCGTAA---ATACGCAAACA-AAAA-TGGTCAAGTACGCCTTTGTT-TTGAA-A--ATCAAGCGTAT------------------AAANACTCTNAAAGAANCTCCATGTACGCAATGATTTTGATTTCCAANCGTAT--CGAAGTN-TAACG--TAACT----GAGAATTCATTG-----TTTAC-T---T-TAAGAGATGATTGAC-------NGTAACAATTACCGA-AA-GTAAAGTATTTAA--CAAAAT----------GATCTAGGCGGGTTATCGATTTTTCG-TCTTGTNACAATTA-CAAAAAGTAAAGT-TTCGAACCA-AA-TGTCCGACAGCGATATTGGCANTTA--ATCGGTTTTTCGTCTTTTCCATACGCTTGA-GTTTATATGAAAAA-GTTGTANACCAGTCAATGTTATTTTNAAAATGGCGTCGC----GTGCGCGAAAT-A-ACA----AA-----AACA-AAC---AAATACTTTACTNGATTATTTCGG-AAGTAANTTAAT-GCAT-ACC-C-GGAACACGGAATAAACGTGGAAAAGCG------CAT--------------TA---AATGAACCGATTG-AAAAAAT-CAA---CGTGTTCGGAG-AAAAAAGGA-AAAAAAATCGACATGATNTACATACTGTCAACGACAAGAAC-TTGGCTGA-TGGAAAGT-AAATTTCNATGGTTAGTCGTAAACAGAATTGAGGGTGACATGNTCNTAGTCGGCTNATATTTTAATGTAAAATGCTAAAATGATATTG-TGTTTATGCAGCNTGTTTTA--TA-TTCACTGTCTT--AATAGTT-A-----------------A-TCAAAACCACTGATCA----NAGTAACACTGT--ACTA-TTTGATCCGTTGCTTCGATATATTA--------TGCCG--TA----ATATACTCTATTAATTCAAA-----------TTA-TGGAGTATT---GGT--ACTCCTACAGATTTGTCAGTACTCC-TT-ATTTTGAAATCGAGGAATAAAA-T-CCCCACT---CAAAA-CTTATC-AGAGTGCTG-ACT
finalCons : AGCACTCTAGATAAGGTACGTAT-TTGCGTAA---ATACGCAAACA-AAAA-TGGTCAAGTACGCCTTTGTT-TTGAA-A--ATCAAGCGTAT------------------AAANACTCTNAAAGAANCTCCATGTACGCAATGATTTTGATTTCCAANCGTAT--CGAAGTN-TAACG--TAACT----GAGAATTCATTG-----TTTAC-T---T-TAAGAGATGATTGAC-------NGTAACAATTACCGA-AA-GTAAAGTATTTAA--CAAAAT----------GATCTAGGCGGGTTATCGATTTTTCG-TCTTGTNACAATTA-CAAAAAGTAAAGT-TTCGAACCA-AA-TGTCCGACAGCGATATTGGCANTTA--ATCGGTTTTTCGTCTTTTCCATACGCTTGA-GTTTATATGAAAAA-GTTGTANACCAGTCAATGTTATTTTNAAAATGGCGTCGC----GTGCGCGAAAT-A-ACA----AA-----AACA-AAC---AAATACTTTACTNGATTATTTCGG-AAGTAANTTAAT-GCAT-ACC-C-GGAACACGGAATAAACGTGGAAAAGCG------CAT--------------TA---AATGAACCGATTG-AAAAAAT-CAA---CGTGTTCGGAG-AAAAAAGGA-AAAAAAATCGACATGATNTACATACTGTCAACGACAAGAAC-TTGGCTGA-TGGAAAGT-AAATTTCNATGGTTAGTCGTAAACAGAATTGAGGGTGACATGNTCNTAGTCGGCTNATATTTTAATGTAAAATGCTAAAATGATATTG-TGTTTATGCAGCNTGTTTTA--TA-TTCACTGTCTT--AATAGTT-A-----------------A-TCAAAACCACTGATCA----NAGTAACACTGT--ACTA-TTTGATCCGTTGCTTCGATATATTA--------TGCCG--TA----ATATACTCTATTAATTCAAA-----------TTA-TGGAGTATT---GGT--ACTCCTACAGATTTGTCAGTACTCC-TT-ATTTTGAAATCGAGGAATAAAA-T-CCCCACT---CAAAA-CTTATC-AGAGTGCTG-ACT
Alignments
lowQualScore : 444444444444444444 11111 11111 111 22222222 11 4444444444 111 22 1 2222 11 1 1 2222 111 22222222222 1 111 1111 111 1 1 11111 99999999999999999999999999999 222 1 222 222222 1 1 55555555555 444444444 3333333 11 1 111 999999999999999999999 22222 11 22 44444444 33333333333 666666666666666 22222222 11 1 2 99999999999999999999999999 1
lowQualScore : 22 5 5 888 5 77 44 4 1 5 5 77 0 222222222222222222 1 1 3 3 33 77 66 3 22 77 888 77 22222 0 44 44444 1 5 000 5 1 5 99999999 0 8 8 1 0 11 3333333333 0 0 222 8 33 1 2 0 5555 0 7 6 1 88 0 3 7 3 0 1 1 0 0 1111 0 2 111 88888888888 0 777 1 1 0000 222 0 2 0 44444 6 2 44444444444444444444444444444 999 777 3 333 0 444444 3 7 1 6 6 3 66666666666 1 333 1 1 1 555555555 3 1111111 2 1 33 0 2 777 111111111111111111111 22222 11 33 3 88888888 00000000000 0 0 000000000000000 00000000 0 55 3 1 0 0 0 44 44444444444444444444444444 3
lowQualScore : .. . . ... . .. .. . . . . .. . .................. . . . . .. .. .. . .. .. ... .. ..... . .. ..... . . ... . . . ........ . . . . . .. .......... . . ... . .. . . . .... . . . . .. . . . . . . . . . .... . . ... ........... . ... . . .... ... . . . ..... . . ............................. ... ... . ... . ...... . . . . . . ........... . ... . . . ......... . ....... . . .. . . ... ..................... ..... .. .. . ........ ........... . . ............... ........ . .. . . . . . .. .......................... .
lowQualScore : 77 7 3 888 0 00 11 5 4 0 7 99 2 111111111111111111 0 4 0 0 33 11 00 0 66 99 666 99 33333 1 33 33333 7 7 000 7 0 2 33333333 8 0 0 4 8 00 0000000000 2 2 222 8 22 2 5 0 6666 7 3 7 0 33 7 3 3 2 0 0 0 2 2 2222 2 5 000 22222222222 0 555 2 0 2222 222 0 5 0 55555 5 0 77777777777777777777777777777 333 333 3 333 7 777777 3 3 0 7 7 3 00000000000 0 555 0 0 0 222222222 2 8888888 5 0 88 0 5 000 888888888888888888888 22222 00 22 7 33333333 33333333333 8 8 555555555555555 88888888 8 88 0 2 0 0 2 33 77777777777777777777777777 3
consensus : AGCACTCTAGATAAGGTACGTAT-TTGCGTAA---ATACGCAAACA-AAAA-TGGTCAAGTACGCCTTTGTT-TTGAA-A--ATCAAGCGTAT------------------AAANACTCTNAAAGAANCTCCATGTACGCAATGATTTTGATTTCCAANCGTAT--CGAAGTN-TAACG--TAACT----GAGAATTCATTG-----TTTAC-T---T-TAAGAGATGATTGAC-------NGTAACAATTACCGA-AA-GTAAAGTATTTAA--CAAAAT----------GATCTAGGCGGGTTATCGATTTTTCG-TCTTGTNACAATTA-CAAAAAGTAAAGT-TTCGAACCA-AA-TGTCCGACAGCGATATTGGCANTTA--ATCGGTTTTTCGTCTTTTCCATACGCTTGA-GTTTATATGAAAAA-GTTGTANACCAGTCAATGTTATTTTNAAAATGGCGTCGC----GTGCGCGAAAT-A-ACA----AA-----AACA-AAC---AAATACTTTACTNGATTATTTCGG-AAGTAANTTAAT-GCAT-ACC-C-GGAACACGGAATAAACGTGGAAAAGCG------CAT--------------TA---AATGAACCGATTG-AAAAAAT-CAA---CGTGTTCGGAG-AAAAAAGGA-AAAAAAATCGACATGATNTACATACTGTCAACGACAAGAAC-TTGGCTGA-TGGAAAGT-AAATTTCNATGGTTAGTCGTAAACAGAATTGAGGGTGACATGNTCNTAGTCGGCTNATATTTTAATGTAAAATGCTAAAATGATATTG-TGTTTATGCAGCNTGTTTTA--TA-TTCACTGTCTT--AATAGTT-A-----------------A-TCAAAACCACTGATCA----NAGTAACACTGT--ACTA-TTTGATCCGTTGCTTCGATATATTA--------TGCCG--TA----ATATACTCTATTAATTCAAA-----------TTA-TGGAGTATT---GGT--ACTCCTACAGATTTGTCAGTACTCC-TT-ATTTTGAAATCGAGGAATAAAA-T-CCCCACT---CAAAA-CTTATC-AGAGTGCTG-ACT
Reference ( family-5058 ) : AGCACTCTAGATAAGGTACGTAT-TTGCGTAA---ATACGCAAACA-AAAA-TGGTCAAGTACGCCTTTGTT-TTGAA-A--ATCAAGCGTAT------------------AAANACTCTNAAAGAANCTCCATGTACGCAATGATTTTGATTTCCAANCGTAT--CGAAGTN-TAACG--TAACT----GAGAATTCATTG-----TTTAC-T---T-TAAGAGATGATTGAC-------NGTAACAATTACCGA-AA-GTAAAGTATTTAA--CAAAAT----------GATCTAGGCGGGTTATCGATTTTTCG-TCTTGTNACAATTA-CAAAAAGTAAAGT-TTCGAACCA-AA-TGTCCGACAGCGATATTGGCANTTA--ATCGGTTTTTCGTCTTTTCCATACGCTTGA-GTTTATATGAAAAA-GTTGTANACCAGTCAATGTTATTTTNAAAATGGCGTCGC----GTGCGCGAAAT-A-ACA----AA-----AACA-AAC---AAATACTTTACTNGATTATTTCGG-AAGTAANTTAAT-GCAT-ACC-C-GGAACACGGAATAAACGTGGAAAAGCG------CAT--------------TA---AATGAACCGATTG-AAAAAAT-CAA---CGTGTTCGGAG-AAAAAAGGA-AAAAAAATCGACATGATNTACATACTGTCAACGACAAGAAC-TTGGCTGA-TGGAAAGT-AAATTTCNATGGTTAGTCGTAAACAGAATTGAGGGTGACATGNTCNTAGTCGGCTNATATTTTAATGTAAAATGCTAAAATGATATTG-TGTTTATGCAGCNTGTTTTA--TA-TTCACTGTCTT--AATAGTT-A-----------------A-TCAAAACCACTGATCA----NAGTAACACTGT--ACTA-TTTGATCCGTTGCTTCGATATATTA--------TGCCG--TA----ATATACTCTATTAATTCAAA-----------TTA-TGGAGTATT---GGT--ACTCCTACAGATTTGTCAGTACTCC-TT-ATTTTGAAATCGAGGAATAAAA-T-CCCCACT---CAAAA-CTTATC-AGAGTGCTG-ACT
gi|1 : AGCACTCTAGATAAGGTGTATATATTG-GTTA---ATACGCAAACA-GAA--TGATCAAGTACGCATATGTT-TTGAA-A--ATCAAGCGTAT------------------AAAAACTCTAAAAGAATCTCCATGTATGCAATGATTTTGATTTCCAATCGTAT--CGAAGTA-TAACG--TAACT----GAGAATTCATTG-----TTAAC-T---T-CAAGAGATGATTGAC-------AGTAACAA-TGCCGA-AA-GTGAAGAATTCAA--CAAAAT----------GATCCAGGCGGGCTATCGATTTTTAA-TCTTGTTACAATTACCAAAAAGTAAAGT-TTCAAACCACAA-TGTCCAACAGCGATATTGGCAATTA--ATCAGTTTTTCATCTTTTCCATACGCTGGA-GTTCATATG-AAAA-GTAGTACACCAGTCAATGTTATTTTCAAAATGGCTTAGC----GTTCGCTAAAT-ATACA----AA-----AACA-AAC---AAATACTTTACTGAATTATTTTGG-AAGTAA-TCAATGGCAT-ACC-CAGGAACACAGAATAAATGTGGAAAAGCA------CAT--------------TA---AATGAACCGATTG--AAAAAT-CCA---CGTGTTCAGAGAAAAAAAGGA-AAAAAAATCGACATGAATTACATACCGTCAACGACAAGGAC-TTGGCTGATTGAAAAGTCAAATTTCCATGGTTAGTTGTAAACAGAATTGAGGGCGACATGTTCCTAATCAACTAATATTTTAATGTAAAATATTAAAATGATATTGTTGTTTATGCAGCCCGTTTTA--TA-TTCACTGTCTT--AATAGTTAA-----------------A-TCAAAACCACTGATCA----CAGTAATACTGT--ACTACTTTGATTCTTTGCTTCGATATATTA--------TACCG--TAATTCATATACTCCATTAAGTCAAAC----------TTA-AGGAGTATT---GGT--ACTCCTACAGATTTGTCAGTACTTC-TTCATTTTGAAATTGAGGAGTAAAA-TACTCCACTGACTAAAACCTTATCTAGAGTGCTG-ACT
gi|10 : GCATTCCAGATAAGAT---------GCGTAA---ATATGTGAACA-AAAAATGGGCAAGTGCACATCTGATATTAAA-A--ATAAACCATTC------------------AGAGAC-----ACGA----TCAT--ACGAAATTATTTTGGTTTCCACACATAC--TGAAGTT-GGATA--TATCC----GAGATTTCATTG-----TTTACTT---T-TAAAAAAT-----AC-------AGCAACAA
gi|11 : TGAAAAATATTATAAACAATTCAATGTTATTTTCAAAATGCCATCGCAGAGGTGAATCAAGT-A-AGA----AA-----AACATAACTAAAAACACTTTGCTTGATTATTTTGACAAGAAAGGGAAT-G-GTAACA-C-AGAAAAC-GAATTAACATTGA
gi|12 : tacGGGT---ATGGTCATAGTCGGCTAATACTTTA--------TGCTAAAA-------A-TGTTTATACAGCATGTTTTA--TA-TTCACT-CCTTTAAATAGTT-ATATAAATTTATTTAGTCG-TCAAAACCACTGATTATTTGAAGTGACACTAT--ACT
gi|13 : caatttgtttTGGTATGGTCATAGTTGGCTTGTATTT---------ATGCTGAGCTG----T--TGTTTATGCATCATGTCTTAAATAGTTAAATGTATT----TAGTT-G-------------------TCAAAACCACTGATCA----AAGTAACACTGTTGACTG-T
gi|14 : caagttgttcATACTCTATTAACTAAAAAATCACAGATATCA-TGAAGTATT---GGT--ACTCCTACC-ATTGGTTAGAACTTC-AT-ATTTTTAAATCAAGGAATAAAA-T-----------------CTTATTAAGAGTGCTG-ATTac
gi|15 : ataCTCTACATTTGGCATGTGT-TTGAGTAA---ATATGCAAACAAAAAA-TGGGCAAGTA-GCCTTTATT-TTGAC-A--ATCAAGC
gi|16 : attgtagccgtgTACGGTACGTAG-TTGCACAA---ACACGCAAACA-AAAA-TAATCAAGAACGCCATTGTT-
gi|2 : AACCATAT------------------AAATACTCTTAAAGAATCTCCATATACACAATGACTTTGATTTCCAATCGTAT--CGAAGTA-TAACA--TAACT----GAGAATTCATTG-----TTTAC-T---T-CGAGAGATGATTGAC-------CAAAACAATTACCGA-AAAGTAAAGAATTCAA--CAAAAT----------GATCTAAGTGGGTTATCGATTTTTCA-TCTTGTAACAATTA-CCAAAAGTAAAGT-ATCAAACCA----TGTCCAACAACGATATTGGCGGGTA--ATTGGTTTTTCGTCTTTTCCATACGCTTGA-GTTTATATGAAAAA-GTTGTACACCAGTCAATGTTACTTTGAAAATGGTGTCGC----GTGCGCGAAATAA-ACA----AA-----AACA-AAC---AAATACTTTACTGGATTTTTTTTA-AAGTAACCTATT-GCAT-ACT-C-CCAACACGGAATAATTGTGGAAAAGCA------CATTATTAAGCCATTGATA---AATGAACTGATTGAAAAAAATATAA---CATGTTTGGAG-AAAAAAGTA-AAAAAAAACGACATGATGGACTTGCTGTCAATGACAAGACC-TTGGCTGAGTGGAAAGTAAAATATCAGTGGTTAGTCGTAAACAGAATTGAGG
gi|3 : CTGGTAATAATTAACAATAAGTAGAGTATTTGAATCA-AAATGTGTGAAAGCGA-ACTAG-ACTTGTTATTGATTATTTGTCTTATACAATCGCTTTATGTTTAT--GAAAAA-ATTATAAACCAGTCATCCTTATTTTAAAAATGGCGTTGC----ATGTGTGAAAA-A-ACATTGCAAGGAACAACA-AAC---AAAAACTTTACTCGATTATTTCAG-AAATAATTTAAT-TCAT-ACCTT-GGAACATGTAGTAAATGTGGATAAGTGTAATACCAT--------------TACTCAATAA----GTT--AACAAAT-CAATGTCATGTT-----------ATGATAAGAAATTTG--ATGATCTGAATATT----ACGATAA-AACATTGACTG-----------AAATTTCTATGGTAAGCCTTCAACAGAATTGAGGGTGACAagga
gi|4 : cCACTGCAGATAAGGCATGTAT-TTGTGTAATTTATATATTAACA-AAAG-TGTTCAAGTATGCCTTTATT-TTGAA-ATTATCAAACGTTT------------------AACAACTCTCAAAGAAACCCAAAATTAGTAATTATTTTGATTTCCATACATAT--TGAAGAT-TAATATTTAATTTTTAAAAAAATC--TGACCAATTTAA-TTCAT-TAAGAGTTAATTATCG------AGTA--AATTATTTA-TA-CCAAAGTA--TAG--CAAAATC---------AATATGGACAGATTATAAATTTTCTGTTCTTTTTCTAATT---AAAATGTATA-T-TTTGAATTA-A
gi|5 : CTAGATAAGGTACACAT-TTGCACAA---ATACGCAAAC-------------AGTA-GCCATTGTT-TTAAA-A--AGCAAAGGTAT------------------TAATACTCTCTTATAAACT-----TAC------ATTTTTATCTCCTAGCATAT--CAGAGTT-AAACG--ATGCT----GAG-ATT--TTG-----TT--C-T---TGTAA---ATCACTGACCATACCTGGTAATAATTAACAATAA-GTAGAGTATTTGAATCAAAATGTGTGAAAGCGAACTAGACTTGTTATTGATTATTTG-TCTTAT-ACAATtaaacaaacagtaaatcagtcagtcattttca
gi|6 : aATGTTCCTAATCAACTCATATTT--ATGTAAAATATGAAAATGATATTG-T--TTATGCAGCTTGTTTTA--TA-TTCACTGTCTT--AATAGTT-A-----------------ATTCAAAACCACTGGTCA----CAGGAATACTGT--ACTA---TGATCTGTTGCTTCGATATATTT--------TGCCG--TA----AT-TACTCTATTAATTCAAG-----------TTGCTGGAGTATT---G------------------GTCAGTACTCCTTT-ATTTTGAAAT
gi|7 : T--ACTAATTTGATCAGCTGCTTTGATATTTTACTCCCAAGTGCCGAGTA----A-ATACTCGGTTATTTCACA-----------ATC-TGGGATAATCAGGGTCAACTCCTGCAAATTTGTCAACACTCC-TTAATATTAGAATAAAGGAACAAAATT-CCCCATTTTGCAAAA----ATC-AGAGTGCTGCACTggtgtcagaggaaa
gi|8 : AGCACTCTAGATAAGGTGCGTAT-TTGTGTTA---TTATGCAAACA-AAAA-ATGCCAAGGACACTTTTATT-TTTAACA--ATCAAGCA-ATCAAATAGCGAAAAAAAAAAAAAA----AAAAAAAGCAACAAGCACTGAAAAACTTTCATTCCCACACATATATCAGAGTTATAACA--TTGC-----GAAGATCCATTG-----TTTAC-T---T-AAAtagtaacaaataatcttgttttttaagtataaatgaaaaat
gi|9 : tacGTAA---AAACGCATACA-AAAA-TGATTAAGTACGCATTTGTT-TTGAA-A--ATCAAGCGTAT------------------AAATACTCTAAAAGAATCTCCATGTATGCAATGATTTTGATTTCCAATCGTAT--CAAAGTA-AAACG--TAACT----GAAAATTAGTTG-----TTTAC-T---T-TGGGAGATGATCGAC-------TGTAACAATTACCGA-AA-GTAAAGTATTTAA--CAAAAC----------Gacacggtgaca