lowQualScore : 1 9999999999 1 44 88888 1 1 1 33333 1 1111
lowQualScore : 5 6 6 6 9999999999 6 3 8 3 77 1 55555 3 1 6 1 77777 5 1 333 1 7 2 3333 0
lowQualScore : . . . . .......... . . . . .. . ..... . . . . ..... . . ... . . . .... .
lowQualScore : 0 0 0 0 0000000000 0 7 1 3 11 7 77777 0 9 7 4 55555 0 9 333 9 6 7 7777 1
consensus : CCTCGCGGGGTGACCTGACC--ACAC-CATCACCAAACAGGACAACATTGTACATAGTTTTATCTTTAAATTTTACCATTTTAGACTTGGA-ACTGCGCGCCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAG
Reference ( gi|7 ) : CCTGGTGGAGTAACCTGAC---ACTTTCTTCATCAGACATGACTAC--TGTATATAGTTTTA-----AATTTTTAACATTTGAGACTT-----CTGTGCACCACCAC-CACACCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTC--CAAGAACCCAGCTCAGTATATGGAAGAAGAAG
gi|2 : CCTCGCGGGGTGACCTGACC--ACA--CATCACCAAACAGGACAACATTGTACATAATTTTATCTTTAAATTTTACCATTTTA-ACTTGGAGACTGCAGGCCATCACACAGACCCAGTCTCGTTG-AG---CT-ATCG-ACGTTCTT---TGTGAGCCCAGCTCAGTATA-GGGAGAAGAAG
gi|4 : ctctCCTCGCAGGGTGACCTGACCACACATT----ACCAAACATGACAACATTGTACATAGCTTTATCTTTAAATTTTATCATTTTA-ACTTGGACACTGCAGGCCATAACTCAGACCCAGTCTCGTAG-AG---CT-ATCG-ACGTTATTT---GAGAGCCCAGCTCAGTA-AAGGGAGAAGAAGaaga
gi|3 : CTCGCGGGGTGACCTGACC--ACACAC--CACCAAACAGGACAACATTGTACATAATTTTATCTTTAAGTTTTACTATTTTA-ACTTGGAGACTGCAGGCCATCACGCAAACCCAGTCTCGTTG-AG---AT-A-TTGACGTTCTT---TGTGAGCACAGATCAGTATA-GGGAGAAGAAGagaag
gi|1 : GGGTGACCTGACC--ACA--CATCACCAAACAGGACAACATTGTATTTAGTTTTATCTTTAAATTTTACCATTTTA-ACTTGGAGACTGCAGGCCATCATGCACACCTAGTCTCGTTG-AG---CT-A-TCAACGTTCTT---TGAGAGCCCAGCTCAGTATA-GGGAGAAAAAGaagaag
gi|6 : ctctactctcaTCACCAAACAGGACAACATTGTACATAGTTTTATCTTTAAATTTTACCATTTTA-ACTTGGAGACTGCAGGCCATCACTCACAACAAATCTCGTTA-AG---CT-ATCG-ACGTTCTTT---AAGAGCCCAGCTCAGTATAaagaa
gi|8 : ttctcctcgcaggttgaccaaaccacacaTCACCAAACAGGACAACATTGTACATAGTTTTATTTTTAAATTTTACCATTTTA-ACTTGGAGACTGCAGGCCATCACGCAGACC
gi|5 : tggcctgaccacacaGAAATGACTAC--TGTATATAGTTTTA-----AATTTTTAACATTTGAGACTT-----CTGTGCACCACCAC-CATGCCTAGTTTCGTTG-AG---CT-A-CGTATGTTCTTT--CAAGAACCCAGCTCAGTATATAGAAGAAGAA
gi|16 : ggtgacctaactaatcaccgattagtcggccagctcTTAGAGACTT-----CTGTGCACCACCAC-CATGCCTAGTCTCATTG-AG---CT-A-TGTACGTTCTTT--CAAGAACCCAGCTCAGTATtaagaag
gi|17 : GAGACTT-----CTGTGCACCACCAC-CACGTCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATAT
gi|11 : AGACTT-----CTGTGCACCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAG
gi|9 : AGACTT-----CTGTGCACCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGa
gi|12 : AGACTT-----CTGTGCACCACCAC-CACGCCTAGTTTCGTTG-AA---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGaaga
gi|10 : AGACTT-----CTGTCCACCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAG
gi|14 : GACTT-----CTGTGCACCCCCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGaaga
gi|13 : ACTT-----CTGTGCACCACCAC-CATGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAG
gi|15 : CTT-----CTGTGCACCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGTAGAAGAAGa
gi|21 : ATCTAGTCTCGTTA-GG---TT-A-CATACGTTCTTT--CAAGAACCCAGCTCAGTATATa
gi|18 : TTCGTTGTAGGTGCT-A-CATACGTTCTGT--TAAGAGCCTAGTTCAGTATATGAAAGAAAA
gi|20 : CGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGGTCAGTATATGGAAGAAGAAGtga
gi|23 : CGTTG-AG---CT-ATCG-GCGTTCTTT---GAGAGCCCAGCTCAGTATATG
gi|22 : tccGTTA-AA---CTTA-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAG
gi|19 : TTG-AG---CT-A-TGTACGTTTTTTTTCAAGAACCCAGCTCAGTATATAGAAGATGAAG
Alignments
lowQualScore : 44444 11111 1111 1 55555 1
lowQualScore : 66 11111 22222 0000 3 3 0 11111 0 0 1 1 333 1 7 2 666
lowQualScore : .. ..... ..... .... . . . ..... . . . . ... . . . ...
lowQualScore : 99 22222 55555 6666 2 2 0 88888 4 4 8 8 222 8 3 2 999
consensus : CCTCGCGGGGTGACCTGACCA--CAC-----ATCA-----CCAA----ACAGGACAACATTGTACATAGTTTTATCTTTAAATTTTACCATTTTAGACTTGGA-ACTGCGCGCCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAG
Reference ( family-4921 ) : CCTCGCGGGGTGACCTGACCA--CAC---C-ATCA-----CCAA----ACAGGACAACATTGTACATAGTTTTATCTTTAAATTTTACCATTTTAGACTTGGA-ACTGCGCGCCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAG
gi|1 : CTCTCAGGGTGACCTGACCA--CAC-----ATCA-----CCAA----ACAGGACAACATTGTATTTAGTTTTATCTTTAAATTTTACCATTTTA-ACTTGGAGACTGCAGGCCATCATGCACACCTAGTCTCGTTG-AG---CT-A-TCAACGTTCTTT---GAGAGCCCAGCTCAGTATA-GGGAGAAAAAG
gi|10 : ctctaAGACTT-----CTGTCCACCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGaagaa
gi|11 : AGACTT-----CTGTGCACCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGaaga
gi|12 : AGACTT-----CTGTGCACCACCAC-CACGCCTAGTTTCGTTG-AA---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGa
gi|13 : CTGTGCACCACCAC-CATGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAG
gi|14 : acttGACTT-----CTGTGCACCCCCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGa
gi|15 : CTGTGCACCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGTAGAAGAAG
gi|16 : cttAGACTT-----CTGTGCACCACCAC-CATGCCTAGTCTCATTG-AG---CT-A-TGTACGTTCTTT--CAAGAACCCAGCTCAGTATa
gi|17 : ttagAGACTT-----CTGTGCACCACCAC-CACGTCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATAT
gi|18 : gTTCGTTGTAGGTGCT-A-CATACGTTCTGT--TAAGAGCCTAGTTCAGTATATGAAAGAAAA
gi|19 : TTG-AG---CT-A-TGTACGTTTTTTTTCAAGAACCCAGCTCAGTATATAGAAGATGAAGtga
gi|2 : CCTCGCGGGGTGACCTGACCA--CAC-----ATCA-----CCAA----ACAGGACAACATTGTACATAATTTTATCTTTAAATTTTACCATTTTA-ACTTGGAGACTGCAGGCCATCACACAGACCCAGTCTCGTTG-AG---CT-ATCG-ACGTTCTTT---GTGAGCCCAGCTCAGTATA-GGGAGAAGAAGa
gi|20 : ctctCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGGTCAGTATATGGAAGAAGAAGaaga
gi|21 : CTAGTCTCGTTA-GG---TT-A-CATACGTTCTTT--CAAGAACCCAGCTCAGTATAT
gi|22 : atGTTA-AA---CTTA-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAG
gi|23 : CGTTG-AG---CT-ATCG-GCGTTCTTT---GAGAGCCCAGCTCAGTATATG
gi|3 : tccCTCGCGGGGTGACCTGACCA--CAC-----ACCA-----CCAA----ACAGGACAACATTGTACATAATTTTATCTTTAAGTTTTACTATTTTA-ACTTGGAGACTGCAGGCCATCACGCAAACCCAGTCTCGTTG-AG---AT-A-TTGACGTTCTTT---GTGAGCACAGATCAGTATA-GGGAGAAGAAG
gi|4 : CCTCGCAGGGTGACCTGACCA--CAC-----ATTA-----CCAA----ACATGACAACATTGTACATAGCTTTATCTTTAAATTTTATCATTTTA-ACTTGGACACTGCAGGCCATAACTCAGACCCAGTCTCGTAG-AG---CT-ATCG-ACGTTATTT---GAGAGCCCAGCTCAGTA-AAGGGAGAAGAAGaagaag
gi|5 : GGTGACCTAACTAATCAC---CGATTAGTCGGCCAGCTCGAAATGACTAC--TGTATATAGTTTTA-----AATTTTTAACATTTGAGACTT-----CTGTGCACCACCAC-CATGCCTAGTTTCGTTG-AG---CT-A-CGTATGTTCTTT--CAAGAACCCAGCTCAGTATATAGAAGAAGAAagaag
gi|6 : CCTCGCAGGTTGACCAAACCA--CAC-----ATCA-----CCAA----ACAGGACAACATTGTACATAGTTTTATCTTTAAATTTTACCATTTTA-ACTTGGAGACTGCAGGCCATCACTCACAACAAATCTCGTTA-AG---CT-ATCG-ACGTTCTTT---AAGAGCCCAGCTCAGTATAtaagaag
gi|7 : ttctCCTGGTGGAGTAACCTGAC-----ACTTTC-TTCA-----TCAG----ACATGACTAC--TGTATATAGTTTTA-----AATTTTTAACATTTGAGACTT-----CTGTGCACCACCAC-CACACCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTC--CAAGAACCCAGCTCAGTATATGGAAGAAGAAG
gi|8 : TGGCCTGACCA--CAC-----ATCA-----CCAA----ACAGGACAACATTGTACATAGTTTTATTTTTAAATTTTACCATTTTA-ACTTGGAGACTGCAGGCCATCAC-
gi|9 : AGACTT-----CTGTGCACCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGgcagacc
Alignments
lowQualScore : 22222222222 1 55555 1
lowQualScore : 66 888 33333333333 3 0 11111 0 0 1 1 333 1 7 2 666
lowQualScore : .. ... ........... . . ..... . . . . ... . . . ...
lowQualScore : 99 888 88888888888 2 0 88888 4 4 8 8 222 8 3 2 999
consensus : CCTCGCGGGGTGACCTGACCACA--CATCACCAAACAG---GACAAC-----------ATTGTACATAGTTTTATCTTTAAATTTTACCATTTTAGACTTGGA-ACTGCGCGCCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAG
Reference ( family-4921 ) : CCTCGCGGGGTGACCTGACCACA--CATCACCAAACAG---GACAAC-----------ATTGTACATAGTTTTATCTTTAAATTTTACCATTTTAGACTTGGA-ACTGCGCGCCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAG
gi|1 : CTCTCAGGGTGACCTGACCACA--CATCACCAAACAG---GACAAC-----------ATTGTATTTAGTTTTATCTTTAAATTTTACCATTTTA-ACTTGGAGACTGCAGGCCATCATGCACACCTAGTCTCGTTG-AG---CT-A-TCAACGTTCTTT---GAGAGCCCAGCTCAGTATA-GGGAGAAAAAG
gi|10 : ctctaAGACTT-----CTGTCCACCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGaagaa
gi|11 : AGACTT-----CTGTGCACCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGaaga
gi|12 : AGACTT-----CTGTGCACCACCAC-CACGCCTAGTTTCGTTG-AA---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGa
gi|13 : CTGTGCACCACCAC-CATGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAG
gi|14 : acttGACTT-----CTGTGCACCCCCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGa
gi|15 : CTGTGCACCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGTAGAAGAAG
gi|16 : cttAGACTT-----CTGTGCACCACCAC-CATGCCTAGTCTCATTG-AG---CT-A-TGTACGTTCTTT--CAAGAACCCAGCTCAGTATa
gi|17 : ttagAGACTT-----CTGTGCACCACCAC-CACGTCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATAT
gi|18 : gTTCGTTGTAGGTGCT-A-CATACGTTCTGT--TAAGAGCCTAGTTCAGTATATGAAAGAAAA
gi|19 : TTG-AG---CT-A-TGTACGTTTTTTTTCAAGAACCCAGCTCAGTATATAGAAGATGAAGtga
gi|2 : CCTCGCGGGGTGACCTGACCACA--CATCACCAAACAG---GACAAC-----------ATTGTACATAATTTTATCTTTAAATTTTACCATTTTA-ACTTGGAGACTGCAGGCCATCACACAGACCCAGTCTCGTTG-AG---CT-ATCG-ACGTTCTTT---GTGAGCCCAGCTCAGTATA-GGGAGAAGAAGa
gi|20 : ctctCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGGTCAGTATATGGAAGAAGAAGaaga
gi|21 : CTAGTCTCGTTA-GG---TT-A-CATACGTTCTTT--CAAGAACCCAGCTCAGTATAT
gi|22 : atGTTA-AA---CTTA-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAG
gi|23 : CGTTG-AG---CT-ATCG-GCGTTCTTT---GAGAGCCCAGCTCAGTATATG
gi|3 : tccCTCGCGGGGTGACCTGACCACA--CACCACCAAACAG---GACAAC-----------ATTGTACATAATTTTATCTTTAAGTTTTACTATTTTA-ACTTGGAGACTGCAGGCCATCACGCAAACCCAGTCTCGTTG-AG---AT-A-TTGACGTTCTTT---GTGAGCACAGATCAGTATA-GGGAGAAGAAG
gi|4 : CCTCGCAGGGTGACCTGACCACA--CATTACCAAACAT---GACAAC-----------ATTGTACATAGCTTTATCTTTAAATTTTATCATTTTA-ACTTGGACACTGCAGGCCATAACTCAGACCCAGTCTCGTAG-AG---CT-ATCG-ACGTTATTT---GAGAGCCCAGCTCAGTA-AAGGGAGAAGAAGaagaag
gi|5 : GGTGACCTAACTA-----ATCACCGATTAGTCGGCCAGCTCGAAATGACTACTGTATATAGTTTTA-----AATTTTTAACATTTGAGACTT-----CTGTGCACCACCAC-CATGCCTAGTTTCGTTG-AG---CT-A-CGTATGTTCTTT--CAAGAACCCAGCTCAGTATATAGAAGAAGAAagaag
gi|6 : CCTCGCAGGTTGACCAAACCACA--CATCACCAAACAG---GACAAC-----------ATTGTACATAGTTTTATCTTTAAATTTTACCATTTTA-ACTTGGAGACTGCAGGCCATCACTCACAACAAATCTCGTTA-AG---CT-ATCG-ACGTTCTTT---AAGAGCCCAGCTCAGTATAtaagaag
gi|7 : ttctCCTGGTGGAGTAACCTGAC-ACTTTCTTCATCAGACAT---GACTAC-------------TGTATATAGTTTTA-----AATTTTTAACATTTGAGACTT-----CTGTGCACCACCAC-CACACCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTC--CAAGAACCCAGCTCAGTATATGGAAGAAGAAG
gi|8 : TGGCCTGACCACA--CATCACCAAACAG---GACAAC-----------ATTGTACATAGTTTTATTTTTAAATTTTACCATTTTA-ACTTGGAGACTGCAGGCCATCAC-
gi|9 : AGACTT-----CTGTGCACCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGgcagacc
Alignments
lowQualScore : 22222222222 1 55555 1
lowQualScore : 66 888 33333333333 3 0 11111 0 0 1 1 333 1 7 2 666
lowQualScore : .. ... ........... . . ..... . . . . ... . . . ...
lowQualScore : 99 888 88888888888 2 0 88888 4 4 8 8 222 8 3 2 999
consensus : CCTCGCGGGGTGACCTGACCACA--CATCACCAAACAG---GACAAC-----------ATTGTACATAGTTTTATCTTTAAATTTTACCATTTTAGACTTGGA-ACTGCGCGCCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAG
Reference ( family-4921 ) : CCTCGCGGGGTGACCTGACCACA--CATCACCAAACAG---GACAAC-----------ATTGTACATAGTTTTATCTTTAAATTTTACCATTTTAGACTTGGA-ACTGCGCGCCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAG
gi|1 : CTCTCAGGGTGACCTGACCACA--CATCACCAAACAG---GACAAC-----------ATTGTATTTAGTTTTATCTTTAAATTTTACCATTTTA-ACTTGGAGACTGCAGGCCATCATGCACACCTAGTCTCGTTG-AG---CT-A-TCAACGTTCTTT---GAGAGCCCAGCTCAGTATA-GGGAGAAAAAG
gi|10 : ctctaAGACTT-----CTGTCCACCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGaagaa
gi|11 : AGACTT-----CTGTGCACCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGaaga
gi|12 : AGACTT-----CTGTGCACCACCAC-CACGCCTAGTTTCGTTG-AA---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGa
gi|13 : CTGTGCACCACCAC-CATGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAG
gi|14 : acttGACTT-----CTGTGCACCCCCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGa
gi|15 : CTGTGCACCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGTAGAAGAAG
gi|16 : cttAGACTT-----CTGTGCACCACCAC-CATGCCTAGTCTCATTG-AG---CT-A-TGTACGTTCTTT--CAAGAACCCAGCTCAGTATa
gi|17 : ttagAGACTT-----CTGTGCACCACCAC-CACGTCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATAT
gi|18 : gTTCGTTGTAGGTGCT-A-CATACGTTCTGT--TAAGAGCCTAGTTCAGTATATGAAAGAAAA
gi|19 : TTG-AG---CT-A-TGTACGTTTTTTTTCAAGAACCCAGCTCAGTATATAGAAGATGAAGtga
gi|2 : CCTCGCGGGGTGACCTGACCACA--CATCACCAAACAG---GACAAC-----------ATTGTACATAATTTTATCTTTAAATTTTACCATTTTA-ACTTGGAGACTGCAGGCCATCACACAGACCCAGTCTCGTTG-AG---CT-ATCG-ACGTTCTTT---GTGAGCCCAGCTCAGTATA-GGGAGAAGAAGa
gi|20 : ctctCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGGTCAGTATATGGAAGAAGAAGaaga
gi|21 : CTAGTCTCGTTA-GG---TT-A-CATACGTTCTTT--CAAGAACCCAGCTCAGTATAT
gi|22 : atGTTA-AA---CTTA-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAG
gi|23 : CGTTG-AG---CT-ATCG-GCGTTCTTT---GAGAGCCCAGCTCAGTATATG
gi|3 : tccCTCGCGGGGTGACCTGACCACA--CACCACCAAACAG---GACAAC-----------ATTGTACATAATTTTATCTTTAAGTTTTACTATTTTA-ACTTGGAGACTGCAGGCCATCACGCAAACCCAGTCTCGTTG-AG---AT-A-TTGACGTTCTTT---GTGAGCACAGATCAGTATA-GGGAGAAGAAG
gi|4 : CCTCGCAGGGTGACCTGACCACA--CATTACCAAACAT---GACAAC-----------ATTGTACATAGCTTTATCTTTAAATTTTATCATTTTA-ACTTGGACACTGCAGGCCATAACTCAGACCCAGTCTCGTAG-AG---CT-ATCG-ACGTTATTT---GAGAGCCCAGCTCAGTA-AAGGGAGAAGAAGaagaag
gi|5 : GGTGACCTAACTA-----ATCACCGATTAGTCGGCCAGCTCGAAATGACTACTGTATATAGTTTTA-----AATTTTTAACATTTGAGACTT-----CTGTGCACCACCAC-CATGCCTAGTTTCGTTG-AG---CT-A-CGTATGTTCTTT--CAAGAACCCAGCTCAGTATATAGAAGAAGAAagaag
gi|6 : CCTCGCAGGTTGACCAAACCACA--CATCACCAAACAG---GACAAC-----------ATTGTACATAGTTTTATCTTTAAATTTTACCATTTTA-ACTTGGAGACTGCAGGCCATCACTCACAACAAATCTCGTTA-AG---CT-ATCG-ACGTTCTTT---AAGAGCCCAGCTCAGTATAtaagaag
gi|7 : ttctCCTGGTGGAGTAACCTGAC-ACTTTCTTCATCAGACAT---GACTAC-------------TGTATATAGTTTTA-----AATTTTTAACATTTGAGACTT-----CTGTGCACCACCAC-CACACCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTC--CAAGAACCCAGCTCAGTATATGGAAGAAGAAG
gi|8 : TGGCCTGACCACA--CATCACCAAACAG---GACAAC-----------ATTGTACATAGTTTTATTTTTAAATTTTACCATTTTA-ACTTGGAGACTGCAGGCCATCAC-
gi|9 : AGACTT-----CTGTGCACCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGgcagacc
blockSeqs : TT TCG TCGAAATGACT T G GGAGA A T GTG T T T TTC
blockSeqs : . . . T G GGAGA G . . . T T C
blockSeqs : . . . T G GGACA T . . . T T C
blockSeqs : . . . T G GGAGA T . . . T T C
blockSeqs : . . . T G GGAGA . . . . . T C
blockSeqs : . . . . G . . . . . . T C
blockSeqs : . . . . G . . . . . . T C
blockSeqs : G . . . . . . T C
blockSeqs : G . . . . . . T C
blockSeqs : . . . . . . . T T
blockSeqs : . . . . . . . T C
blockSeqs : . . . . . . . T C
blockSeqs : . . . . . . . T C
blockSeqs : . . . . . . . G C
blockSeqs : . . . . . T C
blockSeqs : . . . . . T C
blockSeqs : . . . . T .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqCons : ***** C**
originalCons : CCTCGCGGGGTGACCTGACCACA--CATCACCAAACAG---GACAAC-----------ATTGTACATAGTTTTATCTTTAAATTTTACCATTTTAGACTTGGA-ACTGCGCGCCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAG
finalCons : CCTCGCGGGGTGACCTGACCACA--CATCACCAAACAG---GACAAC-----------ATTGTACATAGTTTTATCTTTAAATTTTACCATTTTAGACTT-----CTGCGCGCCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTTC--AAGAACCCAGCTCAGTATATGGAAGAAGAAG
Alignments
lowQualScore : 22222222222 1 33333 1
lowQualScore : 66 888 33333333333 3 0 55555 0 0 1 1 333 1 7 2 666
lowQualScore : .. ... ........... . . ..... . . . . ... . . . ...
lowQualScore : 99 888 88888888888 2 0 33333 4 4 8 8 222 8 3 2 999
consensus : CCTCGCGGGGTGACCTGACCACA--CATCACCAAACAG---GACAAC-----------ATTGTACATAGTTTTATCTTTAAATTTTACCATTTTAGACTT-----CTGCGCGCCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAG
Reference ( family-4921 ) : CCTCGCGGGGTGACCTGACCACA--CATCACCAAACAG---GACAAC-----------ATTGTACATAGTTTTATCTTTAAATTTTACCATTTTAGACTT-----CTGCGCGCCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAG
gi|1 : CTCTCAGGGTGACCTGACCACA--CATCACCAAACAG---GACAAC-----------ATTGTATTTAGTTTTATCTTTAAATTTTACCATTTTA-ACTTGGAGACTGCAGGCCATCATGCACACCTAGTCTCGTTG-AG---CT-A-TCAACGTTCTTT---GAGAGCCCAGCTCAGTATA-GGGAGAAAAAG
gi|10 : ctctaAGACTT-----CTGTCCACCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGaagaa
gi|11 : AGACTT-----CTGTGCACCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGaaga
gi|12 : AGACTT-----CTGTGCACCACCAC-CACGCCTAGTTTCGTTG-AA---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGa
gi|13 : ACTT-----CTGTGCACCACCAC-CATGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAG
gi|14 : GACTT-----CTGTGCACCCCCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGa
gi|15 : CTT-----CTGTGCACCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGTAGAAGAAG
gi|16 : AGACTT-----CTGTGCACCACCAC-CATGCCTAGTCTCATTG-AG---CT-A-TGTACGTTCTTT--CAAGAACCCAGCTCAGTATa
gi|17 : ttagAGACTT-----CTGTGCACCACCAC-CACGTCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATAT
gi|18 : gTTCGTTGTAGGTGCT-A-CATACGTTCTGT--TAAGAGCCTAGTTCAGTATATGAAAGAAAA
gi|19 : TTG-AG---CT-A-TGTACGTTTTTTTTCAAGAACCCAGCTCAGTATATAGAAGATGAAGtga
gi|2 : CCTCGCGGGGTGACCTGACCACA--CATCACCAAACAG---GACAAC-----------ATTGTACATAATTTTATCTTTAAATTTTACCATTTTA-ACTTGGAGACTGCAGGCCATCACACAGACCCAGTCTCGTTG-AG---CT-ATCG-ACGTTCTTT---GTGAGCCCAGCTCAGTATA-GGGAGAAGAAGa
gi|20 : ctctCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGGTCAGTATATGGAAGAAGAAGaaga
gi|21 : CTAGTCTCGTTA-GG---TT-A-CATACGTTCTTT--CAAGAACCCAGCTCAGTATAT
gi|22 : atGTTA-AA---CTTA-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAG
gi|23 : CGTTG-AG---CT-ATCG-GCGTTCTTT---GAGAGCCCAGCTCAGTATATG
gi|3 : tccCTCGCGGGGTGACCTGACCACA--CACCACCAAACAG---GACAAC-----------ATTGTACATAATTTTATCTTTAAGTTTTACTATTTTA-ACTTGGAGACTGCAGGCCATCACGCAAACCCAGTCTCGTTG-AG---AT-A-TTGACGTTCTTT---GTGAGCACAGATCAGTATA-GGGAGAAGAAG
gi|4 : CCTCGCAGGGTGACCTGACCACA--CATTACCAAACAT---GACAAC-----------ATTGTACATAGCTTTATCTTTAAATTTTATCATTTTA-ACTTGGACACTGCAGGCCATAACTCAGACCCAGTCTCGTAG-AG---CT-ATCG-ACGTTATTT---GAGAGCCCAGCTCAGTA-AAGGGAGAAGAAGaagaag
gi|5 : GGTGACCTAACTA-----ATCACCGATTAGTCGGCCAGCTCGAAATGACTACTGTATATAGTTTTA-----AATTTTTAACATTTGAGACTT-----CTGTGCACCACCAC-CATGCCTAGTTTCGTTG-AG---CT-A-CGTATGTTCTTT--CAAGAACCCAGCTCAGTATATAGAAGAAGAAagaag
gi|6 : CCTCGCAGGTTGACCAAACCACA--CATCACCAAACAG---GACAAC-----------ATTGTACATAGTTTTATCTTTAAATTTTACCATTTTA-ACTTGGAGACTGCAGGCCATCACTCACAACAAATCTCGTTA-AG---CT-ATCG-ACGTTCTTT---AAGAGCCCAGCTCAGTATAtaagaag
gi|7 : ttctCCTGGTGGAGTAACCTGAC-ACTTTCTTCATCAGACAT---GACTAC-------------TGTATATAGTTTTA-----AATTTTTAACATTTGAGACTT-----CTGTGCACCACCAC-CACACCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTC--CAAGAACCCAGCTCAGTATATGGAAGAAGAAG
gi|8 : TGGCCTGACCACA--CATCACCAAACAG---GACAAC-----------ATTGTACATAGTTTTATTTTTAAATTTTACCATTTTA-ACTTGGAGACTGCAGGCCATCAC-
gi|9 : AGACTT-----CTGTGCACCACCAC-CACGCCTAGTTTCGTTG-AG---CT-A-CGTACGTTCTTT--CAAGAACCCAGCTCAGTATATGGAAGAAGAAGgcagacc