lowQualScore : 66666 555555555555555555555555555555555555 11 111111 111111111 11111 1 44444444444444 11111 1 2222222 333333333333333333333333333333333333333333 444444444444
lowQualScore : 66666 2 33 555 3 2 55 99999 777777777777777777777777777777777777 555 77 7 3 44 00 7777 3 333333 5 1 333333333 11111 0 33333333333333 1 1 22222 2 8888 5 1111111 88888 333333333333333333333333333333333333333333 2 2 2 5555 4 1 33 2 111111111111 33
lowQualScore : ..... . .. ... . . .. ..... .................................... ... .. . . .. .. .... . ...... . . ......... ..... . .............. . . ..... . .... . ....... ..... .......................................... . . . .... . . .. . ............ ..
lowQualScore : 22222 4 22 444 8 1 66 11111 999999999999999999999999999999999999 888 99 8 3 22 99 1111 3 333333 7 4 888888888 44444 9 22222222222222 4 4 33333 0 7777 0 8888888 88888 888888888888888888888888888888888888888888 4 4 4 7777 4 4 11 2 444444444444 11
consensus : NCAGGACCTAAATTCATCAATNT-TTG-AG--TCTGA-G-ATTNAGACTCAG-ACTCAAAAT-NTCA---AAAAT---T-T--AAA---TTCA-AAT-AAN-AT-C---TATTTA---A--CAAGNAA-ATT-ACNATAT----TTAT-TTGC-A---NAAACAAGCAAT----T----TTAA----TGAT-TATTTAACNGAAAAN--TTACAGAATC----ACANTTC---T-TACCC--ATAATT--GTATGTT-TA-CA--GGGT-TTTACAAAAATGT-A--AG----------ATTT-TGAGT-C-TGAGTCC--G-ANTCTCAGA--C-TCAAA---TAT--TG--ATGAATTTAGGC
Reference ( gi|2 ) : TCAGGACCTAAATTCATCA-----TTG-AG--TCTGA-G-ATTGAGACTCAA-ACTCAAAAT-GTCA---AAAAC---T-T-CAAA---TTCA-AAT-AAA-AT-C---TATTTA---A--CAAGCAA-ATT-ACCATAT----TTAT-TTGC-A---TAAACAAACAGT----T----TTAA----TGAT-TATTTAACCGAAAAA-GCTACAGAATC----ACACTTC---T-TACCC--ATAACT--GTATGTT-TA-GA--GGGT-TTTGCAAAAATGT-A--AG----------ATTT-TGAGT-C-TGAGTCC--G-ATTCTCAGA--C-TAAAA--CTAG--TG--ATGAATTTAGGC
gi|4 : CAGGAGCTAAATCCATCAATATTTTG-AG--TCTGT-G-ATTAAGACTCAG-GCTCAAAAT-GTCA---AAAAT---T-T-AAAA---TTAA-AAT-AAC-AT-C---TTTTAA---A--CAAGCAA-ATT-AGTATAT----TTAT-TTTC-A---GAAACAAGCAGT----T----GTAA----TGAT-TA----------------TACAGCATC----GCATTTT---T-TACTC--TTAGTT--GTATGTT-TA-CT--GGGT-TTTACAAAAATGT-A--AG----------A-TT-TGAGT-CTTGAGTTC--G-ATTCTCAGA--C-CCAAC--CTAT--TG--GTGAATTTAGGC
gi|13 : CATGGCCTAAATTCATCA---------AA--TTTGA-A-ATGGGGGCTCAG-ATTCAAAAT-GTCA---AAAAT---G-T-CATG---ATCAGAAT-GAT-AC-T---AATAAA---A--CAAGCAA-ATC-ACTATAT----TTAT-TTGC-GGGTTTTGCAAATAGT----T----CTAA----cca
gi|1 : aCAGGACCTAAATTCATTAATGTGTTG-AA--TCTAA-A-ACTTGTACTTGA-ACTAAAAAT-CTGA---AATAT---T-G-TAAC---TTGC-ATT-AAA-AA-A---TATTTT---A--CAAGAAA-GGA-A--AAAC----TTTT-TCGT-A---CAA--AAACAAT----TGATATCAA-----AATGTATT--ATCAAAAAATATCAAAGAATA----AC-CTT----T-TAACTAAATAATT--TGCTATT-AA-AA--AAGT-ATTTAAAAAATTG-G--CG----------GTTC-TCAGT-T-TGAGTTT--G-GGTTTTAAA--T-TCAAA----AGTTTG--ATGAATTT
gi|14 : cCAAGACCTAAAGTCAGCA-----AT--AC--TTTGA-G-TCTAAGAATCGG-TCTGAAAAT-ATCATTTATAAC---C-T-AAAA-----CA-AAT-AAA-----------TTA---AG-CAAGTAA-ATT-G----AT----CTAG-TTGC-A---GAAACAAGTAATC---T----TTGA-----GAT-TAtagc
gi|16 : tgCAGGACCTAAATTTAACAACC--TTA-TA--TCAAA-A-ACACAGACTCAA-ACTCAAAAT-CTGA---AAc
gi|19 : gAGGACCTAGATTCATCAATATTTTG-AA--TCTGA-G-ATTTAGACTCAG-ACTCAAAttttgtaaattgcatttagtaattctaatagaaatgaa
gi|17 : AGGGCTTAAATTCATCAAAC--TTA-AGTATCTTA---ACTCAGACTCGA-ACTCGGAAT-ta
gi|4 : tcagcaGGGCCTAAATTCACCAATAGGTTG-GG--TCTGA-GAATCGA-ACTCAAGACTCAAA
gi|5 : caggagctaaatccatcaatattttgagtctgtgattaagactcaggctcaaaatgtcaaaaatttaaaattaaaataacatcttttaaacaagcaaattagtatatttattttcagaaacaagcagttgtaatgattatacagcatcgcattttttactcttagttgtatgtttactgggttttacaaaaatgtaagaGGACCTAAATTCATTT-----TTG-A----TTGA-G-ATTGAGATTCAA-ACTCAAATG-GTCA---AGGA----------------------T-AGC-AT-T---TATTAA---A--CTAGTAA-ATT-ACTATAT----ATATATTACCA---GAAACAAGCAAT----G----TTAA----TGAT-TATTAAACAGAAATA--TTACAGGGCC----ACAGTTT---T-CACCC--ATTCTT--GTATGTT-TA-CA--GGGC-TTTACATCT-TGT-A--AG----------ATTT-TGAGT-C-TAAGTTC--C-ATTCTCAGA--C-TCAAA--ATAT--TG--ATGAATTTAGGa
gi|5 : ACCTAAATTCATCAATATTTTG-AG--TCTGA-G-AATGGAACTTAG-ACTCAAAAT-t
gi|3 : ggacctaaattcatttttgattgagattgagattcaaactcaaatggtcaaggatagcatttattaaactagtaaattactatatatatattaccagaaacaagcaatgttaatgattattaaacagaaatattacagggccacagttttcacccattcttgtatgtttacagggctttacatcttgtaagATCTAAATCCATCAATAGTTTG-AG--TATGA-GGATCGA-ACTCAG-ACTCAAAAT-CTTA---CATTT---TGT-CAAA---C-CA-AGT-AATTAT-A---CAATTATGGA--TAAGAAATATA-ATCATATAACATTTT-CTGT-----TATATAA----T----T----TTAAAGACTGCC-TGTTTA--TGTAAA----TACAGA-TA----GCAATTCAAGT-T-------TAAAA--GAATGTTATATGA--ATCT-TTTTT-----TTT-T--AA----------ATTT-TGAGT-C-CGAGTCC--A-AATCTCAGA--C-TCAAA--ATCT--TG--ATGAATTT
gi|10 : ACCTAAATTCATCA-----------------A-G-ATATAGACGCAG-TCTCAAAAT-TTGA---AAAAA---A-T-AAGA---CTCA-AAT-TAC-TTTC---TATTAA---A--CAAATAA-ATT-ACTATAT----TTAT-TTGC-A---GAAACAAGCAGT----T----TTTA----TGAT-TATTTAACAAAATAT-TTTACATGATC----ACATTTC---
gi|18 : CTAAAATCATCAAACTCTTG-AG--ACTGA-A-ATTCAGACCCAA-ACTCAAAATAGTC
gi|9 : gggTAAATTCATCAATCA-TTGGAG--TCTGATA-ATTG-TATTCAG-GGTCAAAGT-ATTA---ACAA----T-T-GAAA---TCCT-TAT-AAC-AT-CGTTTAATTA---AAACAAACAC-ATT-ACACTAT----TTAT-TTAC-G---GAAACAAAGAAT----T----GAGG----TAAT-TATTTAACGGAA
gi|3 : gggaaAAATTCATCAAGATTTTG-AG--TCTGA-G-ATTTGGACTCGG-ACTCAAAAT-TTAA---AAAA---------AAAAGATTCA-TAT-AAC-AT-T---CTTTTA---A---ACTTGA-ATT-GCTATCT----GTAT-TTAC-A---TAAACAGGCAGTC---T----TTAA-----AAT-TATATAACAGAAAAT-GTTATATGATT----ATATTTC---T-TATCC--ATAATT--GTATAAT-TA-CT--TGGT-TTGACAAAA-TGT-A--AG----------ATTT-TGAGT-C-TGAGTTC--G-ATCCTCATA--C-TCAAA--CTAT--TG--ATGGATTTAGcctttttgaaattttttagctctattttgatgctgactgtttt
gi|12 : TTCATCAAGTTTTTT-AG--TGTAA-A-ACCCAGACTCAA-GCTCTAAAT-CT------AAAC---T-T----A---TGTA-A-T-AAA-AA-C---AATTTT---A--CAAGAAA-GTA-ACAATAT----TTTC-TTGC-A---TAAACTGTCAAT----T----TTAA----TG-T-TAat
gi|19 : tttatt-----TTG-AG--TCTGA-G-TCTAAATCTCAG-ATTCAAAAT-ATcatta
gi|6 : aggacctagattcatca-ATTGAGATTGAA-ACTCTGGAA-GTTT---GAAAC---T-TGC--A---TT-----T-AAA-AT-----TATTTC---A--CAAG-AA-ATTAACAACAC----TTAA-CTAC-A---AAAACTGTCTAT----T----TCAA----TGATATATT--ATCAGAAAT-GTTAAAAAAACAACAACA-TTC---TGTA-------AACTAAATACGTT----------GT-TTT-TAAAAAAGT-ATTAGAAAATCGGCAATTC-TAAGT-T-TCAGTTT--G-GGGTTTAGA--C-TCAAA----AG--TGTTATGAATTTAata
gi|7 : aaactcaccaaattGACTCAA-ACTGAAAAT-GT-G---ATGATGTGT-T----A---TTTA-CATTAAA-AG-CA--CATTTT---A--CAAGAAA-AGA-ACAATAT----TTTC-CTAC-A---AAAACCAACAATAATGT----TTA-----TGATATAGT--ACTAGAAAA-TATAAATAAT-----ACACGTT---T-TAACT--A-AAAT--CTTTGCT-TA-AATAAAATATTT--AAAAATG-----GGC---------ATTTCTGAGT-C-TGGGTTCTAG-ACTCACAGG--T-T------------TT--ATGAATTTAAGCa
gi|15 : catcaaacttttAATC----ACG--TC---T-TACTG--TTAATT--CTATGTT-TA-CA--AGG--TCAGCAAAAAATT-C--AG----------TTTT-TGAGTCC-TGTGTTC--G-ATCCATTGA--C-TCGAA----AG--T----TGAATTTA
gi|9 : tacATGTTATA--A--GGAT-TTC----AATTGTTA--AT----------ACTT-TGACC-C-TGAATAC--A-ATTATCAGA--C-TCCAA--TGAT--TG--ATGAATTTA
gi|16 : gggaa-TTTACAAAA-TTT-C--AG----------ATTT-TGAGT-T-TGAGTCT--GTGTTTTT-GA--TATAAGG--TT-G--T----TAAATTTAGGcgtttaattaaaacaaacacattacactatttatttacggaaacaaagaattgaggtaattatttaacggaacctttttgaaattttttagctctattttgatgctgactgtttt
gi|12 : gcaggaTTACATAAGTTT-A---G----------ATTT-AGAGC-T-TGAGTCT--G-GGTTTTACA--C-TAAAAAACT----TG--ATGAAttgcatttagtaattctaatagaaatgaa
gi|4 : tttatt----------ATTT-TGAGC-C-TGAGTCT--T-AATCACAGA--C-TCAAA--ATAT--TG--ATGGATTTAGtaaaaacaattttacaagaaagtaacaatattttcttgcataaactgtcaattttaatgttacatta
gi|13 : caggag----------ATTT-TGAAT-C-TGAGCCC--CCATT-TCAAA--T-T------------TG--ATGAATTTAGGCgtcaaaaatttaaaattaaaataacatcttttaaacaagcaaattagtatatttattttcagaaacaagcagttgtaatgattatacagcatcgcattttttactcttagttgtatgtttactgggttttacaaaaatgtaagatttgagtcttgagttcgattctcagacccaacctattggtgaatttaggccca
gi|18 : acatg----------ATTT-TGAGT-T-TGGGTCT--G-AATTTCAGT--C-TCAAG----AGTTTG--ATGATTTTAGgtcaaaaatgtcatgatcagaatgatactaataaaacaagcaaatcactatatttatttgcgggttttgcaaatagttctaa
gi|17 : ggg----------ATTC-CGAGT-T-CGAGTCT--G-AGT-TAAGATAC-TTAAG--TT----TG--ATGAATTTAAGCagtc
gi|5 : tcagcaTT-TGAGT-T-TGAATCT--C-AATCTCA-A--T-CAAAA------------ATGAATTTAGGcct
gi|19 : ggaTT-TGAGT-C-TGAGTCT--A-AATCTCAGA--T-TCAAA--ATAT--TG--ATGAATCTAGGtggtcaaggatagcatttattaaactagtaaattactatatatatattaccagaaacaagcaatgttaatgattattaaacagaaatattacagggccacagttttcacccattcttgtatgtttacagggctttacatcttgtaagattttgagtctaagttccattctcagactcaaaatattgatgaatttaggt
gi|14 : aggaAGACC--G-ATTCTTAGA--C-TCAAA--GTAT--TG--CTGACTTTAGGta
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): ACTCAGATTCAATATTTAATTTTTTTAATTAACATTAATATCTTATAACAAGAAATTGTTTGTTTATTTTTTGTAAAAACAACATATACTGCCAATTAATTTATTCTAAAACCACATATTTGACTTTAAACAACATATTTTTACTATCTTTACATATGAAAACTTAGAGTTTGAGTCAGATTTTAAGTTCAAAAGTTTGATGAATTTAGGCTCAG
Unaligned ( gi|11 ): ACATTTGCTACAAAAAATCAATTTCAGTGATATATTTTCAGAAAATGTATATAAAAAAATATATATTTTAACCTAAATATTTCGCTTTTATAAAGTATTTTAAAGTCGGCAATTCTGAGATTAATTCTGGGTTTTAGAC
Unaligned ( gi|20 ): AACAATTCCGAGTTTGAGTCTGTGATACTCATAGGTTTTATGAATTTAAGTC
Unaligned ( gi|21 ): AGTGAGTTTTAGGCTCAAATCTTTGATGAATTTAGGCTCAGC
Alignments
lowQualScore : 222222222222222 222222222222222222222222222222222 11111 1111 111 2222 111 111 1 111 2222222222 222222
lowQualScore : 888888888888888 0 4 1 1 000000000000000000000000000000000 3 4 22222 1 44 4 333 3 0 3 1 1 5555 555 3 3 111 77 4 1111 1 1 44 333 5 1 000 1 0 777 444 0 000 22 6666666666 5 5 5 8 2 2 4 4 666666 55
lowQualScore : ............... . . . . ................................. . . ..... . .. . ... . . . . . .... ... . . ... .. . .... . . .. ... . . ... . . ... ... . ... .. .......... . . . . . . . . ...... ..
lowQualScore : 444444444444444 8 4 0 0 222222222222222222222222222222222 3 2 99999 8 66 2 888 3 1 3 0 2 0000 555 6 6 111 00 4 5555 4 4 66 000 0 4 555 4 1 222 111 0 888 22 9999999999 0 0 0 2 6 7 4 4 222222 66
consensus : NCAGGACCTAAATTCATCAA-TN-T-T-T-GAG--TCTGAGATTNAGACTCAGACTCAAAATNTCA---AAA------AT-T---T-AA-A-TTCA-AAT-AACATC---TATTTAA--CAAGCAAATTA-CNATATTTAT-TTGC-AGAAACAAGCAAT----TTT--AATG-AT-TAT-TTAAC-AGAA-AN-N-TTACAGAATC-ACA--NTTCT-TACCC--ATAATTGTATGTTT--ACAGGGT-TTTA-CAAAAATGTAAG----------ATTT-TGAGT-C-TGAGTTCGATTCTCAGACTC-AA-A--TA--TT-GATGAATTTAGGC
Reference ( family-481 ) : NCAGGACCTAAATTCATCAA-TN-T-T-T-GAG--TCTGAGATTNAGACTCAGACTCAAAATNTCA---AAA------AT-T---T-AA-A-TTCA-AAT-AANATC---TATTTAA--CAAGNAAATTA-CNATATTTAT-TTGC-ANAAACAAGCAAT----TTT--AATG-AT-TAT-TTAAC-NGAA-AA-N-TTACAGAATC-ACA--NTTCT-TACCC--ATAATTGTATGTTT--ACAGGGT-TTTA-CAAAAATGTAAG----------ATTT-TGAGT-C-TGAGTCCGANTCTCAGACTC-AA-A--TA--TT-GATGAATTTAGGC
gi|1 : CAGGACCTAAATTCATTAA-TG-TGT-T-GAA--TCTAAAACTTGTACTTGAACTAAAAATCTGA---AAT------AT-TG--T-AA-C-TTGC-ATT-AAAAAA---TATTTTA--CAAGAAAGGAA-AAACTTTTTC-GTAC-AAAAACAATTGAT----ATCAAAATGTAT-TAT-----C-AAAA-AATA-TCAAAGAATA-AC----CTTT-TAACTAAATAATTTGCTATTA--AAAAAGTATTTA--AAAAATTGGCG----------GTTC-TCAGT-T-TGAGTTTGGGTTTTAAATTC-AA-A---AGTTT-GATGAATTT
gi|10 : cACCTAAATTCATCAA--------------------GATATAGACGCAGTCTCAAAATTTGA---AAA------AA-A---T-AAGA-CTCA-AATTACTTTC---TATTAAA--CAAATAAATTA-CTATATTTAT-TTGC-AGAAACAAGCAGT----TTT--TATG-AT-TAT-TTAAC-AAAATAT-T-TTACATGATC-ACA--TTTCtagc
gi|12 : TTCATCAAGTT-T-T-T-TAG--TGTAAAACCCAGACTCAAGCTCTAAATCT------AA------AC-T---T-AT-G-T----AAT-AAAAAC---AATTTTA--CAAGAAAGTAA-CAATATTTTC-TTGC-ATAAACTGTCAAT----TTT--AATG--T-TA
gi|13 : tttattCATGGCCTAAATTCATCAA------------A--TTTGAAATGGGGGCTCAGATTCAAAATGTCA---AAA------ATGT---C-AT-G-ATCAGAAT-GATACT---AATAAAA--CAAGCAAATCA-CTATATTTAT-TTGC-catta
gi|14 : aCAAGACCTAAAGTCAGCAA-TACT-T-T-GAG--TCT------AAGAATCGGTCTGAAAATATCATTTATA------AC-C---T-AA-A-A-CA-AAT-AA--------ATTAAG--CAAGTAAATTG-----ATCTAG-TTGC-AGAAACAAGTAATC---TTT--GA-G-AT-TAgggttttgcaaatagttctaa
gi|15 : tgAATC-ACG----TCT-TACTG--TTAATTCTATGTTT--ACAAGG---TCAGCAAAAAATTCAG----------TTTT-TGAGTCC-TGTGTTCGATCCATTGACTC-GA-A--AG--T----TGAATTTAc
gi|16 : tacCAGGACCTAAATTTAACAA-CC-T-T-A-TA---TCAAAAACACAGACTCAAACTCAAAATCT-----GAA------AT-TTTGT-AA-A-TT
gi|17 : gAGGGCTTAAATTCATCAA--A-C-T-T-AAGTATCTTA-ACTCAGACTCGAACTCGGAATgcatttagtaattctaatagaaatgaa
gi|18 : tcagcaCTAAAATCATCAA-AC-TCT-T-GAG--ACTGAAATTCAGACCCAAACTCAAAAT
gi|19 : gggAGGACCTAGATTCATCAA-TA-T-T-TTGAA--TCTGAGATTTAGACTCAGACTCAAAagtc
gi|2 : CAGGACCTAAATTCATCA-------T-T-GAG--TCTGAGATTGAGACTCAAACTCAAAATGTCA---AAA------AC-T---TCAA-A-TTCA-AAT-AAAATC---TATTTAA--CAAGCAAATTA-CCATATTTAT-TTGC-ATAAACAAACAGT----TTT--AATG-AT-TAT-TTAAC-CGAA-AA-AGCTACAGAATC-ACA--CTTCT-TACCC--ATAACTGTATGTTT--AGAGGGT-TTTG-CAAAAATGTAAG----------ATTT-TGAGT-C-TGAGTCCGATTCTCAGACTA-AA-AC-TA--GT-GATGAATTTAGGCta
gi|20 : tGACTTAAATTCATAAA-AC-C-TAT-GAG--TATCA----CAGACTCAAACTCGGAAT
gi|21 : aacaGAGTTTTAGGCTC-AA-A--TC--TTTGATGAATTTAGGC
gi|3 : agtAAATTCATCAA-GA-T-T-TTGAG--TCTGAGATTTGGACTCGGACTCAAAATTTAA---AAA------AA-A---A-AG-A-TTCA-TAT-AACATT---CTTTTAA---ACTTGAATTG-CTATCTGTAT-TTAC-ATAAACAGGCAGTC---TTT--AA-A-AT-TAT-ATAAC-AGAA-AATG-TTATATGATT-ATA--TTTCT-TATCC--ATAATTGTATAATT--ACTTGGT-TTGA-C-AAAATGTAAG----------ATTT-TGAGT-C-TGAGTTCGATCCTCATACTC-AA-AC-TA--TT-GATGGATTTAGtcagc
gi|4 : CAGGAGCTAAATCCATCAA-TA-T-T-TTGAG--TCTGTGATTAAGACTCAGGCTCAAAATGTCA---AAA------AT-T---T-AA-AATTAA-AAT-AACATC---TTTTAAA--CAAGCAAATTA-GTATATTTAT-TTTC-AGAAACAAGCAGT----TGT--AATG-AT-TA-------------------TACAGCATC-GCA--TTTTT-TACTC--TTAGTTGTATGTTT--ACTGGGT-TTTA-CAAAAATGTAAG----------A-TT-TGAGT-CTTGAGTTCGATTCTCAGACCC-AACC--TA--TT-GGTGAATTTAGGCat
gi|5 : GGACCTAAATTCAT-----T-T-T-T-GA----TTGAGATTGAGATTCAAACTCAAATGGTCA---AGG------AT---------------------AGCATT---TATTAAA--CTAGTAAATTA-CTATATATATATTACCAGAAACAAGCAAT----GTT--AATG-AT-TAT-TAAAC-AGAA-AT-A-TTACAGGGCC-ACA--GTTTT-CACCC--ATTCTTGTATGTTT--ACAGGGC-TTTA-C-ATCTTGTAAG----------ATTT-TGAGT-C-TAAGTTCCATTCTCAGACTCAAA-A--TA--TT-GATGAATTTAGGcca
gi|6 : AAACTCACCAA-AT-T-A-T--------TGAGATTGAAACTC----TGGAAGTTT-----GAA------AC-T---T-GC-A-TT-----T-AAAAT----TATTTCA--CAAG-AAATTAACAACACTTAA-CTAC-AAAAACTGTCTAT----TTC--AATG-A--TATATTATC-AGAA-AT-G-TTAAAAAAACAACAACATTCTGTAAAC---TAA--ATACGTT-------GTT-TTTA-AAAAAGTATTAGAAAATCGGCAATTC-TAAGT-T-TCAGTTTGGGGTTTAGACTC-AA-AAGTG--TT--ATGAATTTAt
gi|7 : GACTCAAACTGAAAATGTGA---TGATGTGTTAT-T---T-AC-A-TTAA-AAG-CACAT------TTTA---CAAGAAAAGAA-CAATATTTTC-CTAC-AAAAACCAACAATAATGTTT---ATG-ATATAG-T--ACTAGAA-AA-T-ATAAATAAT--ACA--CGTTT-TAACT--AAAATCTT-TGCTTAAATAAAATATTT---AAAAATG--GGC---------ATTTCTGAGT-C-TGGGT-----TCT-AGACTC-AC-A--GGT-TT-TATGAATTTAAGCa
gi|9 : catcaaacttttTAAATTCATCAA-TCAT-T-G-GAG--TCTGATAATTGTATTCAGGGTCAAAGTATTA---ACA------AT-T---G-AA-A-TCCT-TAT-AACATCGTTTAATTAAAACAAACACATTA-CACTATTTAT-TTAC-GGAAACAAAGAAT----TGA--GGTA-AT-TAT-TTAAC-GGAA-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACTCAGATTCAATATTTAATTTTTTTAATTAACATTAATATCTTATAACAAGAAATTGTTTGTTTATTTTTTGTAAAAACAACATATACTGCCAATTAATTTATTCTAAAACCACATATTTGACTTTAAACAACATATTTTTACTATCTTTACATATGAAAACTTAGAGTTTGAGTCAGATTTTAAGTTCAAAAGTTTGATGAATTTAGGCTCAG
Unaligned ( gi|11 ): ACATTTGCTACAAAAAATCAATTTCAGTGATATATTTTCAGAAAATGTATATAAAAAAATATATATTTTAACCTAAATATTTCGCTTTTATAAAGTATTTTAAAGTCGGCAATTCTGAGATTAATTCTGGGTTTTAGAC
Alignments
lowQualScore : 222222222222222 111111111111111111111111111111111 111111 1111 1 11111 111 111 1 111 222222222222 222222
lowQualScore : 888888888888888 0 4 1 1 555555555555555555555555555555555 3 666666 33 44 7 333 3 44 3 0 1 5555 555 3 7 0 6666 00000 1 1 0 4 333 5 1 000 1 0 777 444 0 000 22 333333333333 5 5 5 1 4 4 666666 55
lowQualScore : ............... . . . . ................................. . ...... .. .. . ... . .. . . . .... ... . . . .... ..... . . . . ... . . ... . . ... ... . ... .. ............ . . . . . . ...... ..
lowQualScore : 444444444444444 8 4 0 0 333333333333333333333333333333333 8 333333 22 66 8 888 3 66 3 2 2 0000 555 6 3 3 9999 33333 4 4 1 4 000 0 4 555 4 1 222 111 0 888 22 000000000000 0 0 0 7 4 4 222222 66
consensus : NCAGGACCTAAATTCATCAA-TN-T-T-T-GAG--TCTGAGATTNAGACTCAGACTCAAAATNTCA---AAA------AT-T---T-AA-A-TTCA-AATAACAT-C---TATTTAA--CAAGCAAATTA-CNATATTTAT-TTG--C-AGAAACAAGCAAT----TTT--AATG-AT-TATTTAAC-AG-AA-ATN-TTACAGAATCA-CAN--TTCT-TACCC--ATAATTGTATGTTT--ACAGGGT-TTTA-CAAAAATGTAAG-A----------TTT-TGAGT-C-TGAGTTCGATTCTCAGACTC-AA-A--TA--TT-GATGAATTTAGGC
Reference ( family-481 ) : NCAGGACCTAAATTCATCAA-TN-T-T-T-GAG--TCTGAGATTNAGACTCAGACTCAAAATNTCA---AAA------AT-T---T-AA-A-TTCA-AATAACAT-C---TATTTAA--CAAGCAAATTA-CNATATTTAT-TTG--C-AGAAACAAGCAAT----TTT--AATG-AT-TATTTAAC-AG-AA-ANN-TTACAGAATCA-CAN--TTCT-TACCC--ATAATTGTATGTTT--ACAGGGT-TTTA-CAAAAATGTAAG-A----------TTT-TGAGT-C-TGAGTTCGATTCTCAGACTC-AA-A--TA--TT-GATGAATTTAGGC
gi|1 : CAGGACCTAAATTCATTAA-TG-TGT-T-GAA--TCTAAAACTTGTACTTGAACTAAAAATCTGA---AAT------AT-TG--T-AA-C-TTGC-ATTAAAAA-A---TATTTTA--CAAG-AAAGGA-AAA-ACTTTT-TCGTAC-AAAAACAATTGAT----ATCAAAATGTAT-TATCAAA-----AA-ATA-TCAAAGAATAA-C----CTTT-TAACTAAATAATTTGCTATTA--AAAAAGTATTTA--AAAAATTGGCG-G----------TTC-TCAGT-T-TGAGTTTGGGTTTTAAATTC-AA-A---AGTTT-GATGAATTT
gi|10 : cACCTAAATTCATCAA--------------------GATATAGACGCAGTCTCAAAATTTGA---AAA------AA-A---T-AAGA-CTCA-AATTACTTTC---TATTAAA--CAAATAAATTA-CTATATTTAT-TTG--C-AGAAACAAGCAGT----TTT--TATG-AT-TATTTAAC-AA-AATATT-TTACATGATCA-CAT--TTCtagc
gi|12 : TTCATCAAGTT-T-T-T-TAG--TGTAAAACCCAGACTCAAGCTCTAAATCT------AA------AC-T---T-AT-G-T----AATAAAAA-C---AATTTTA--CAAGAAAGTAA-CAATATTTTC-TTG--C-ATAAACTGTCAAT----TTT--AATG--T-TA
gi|13 : tttattCATGGCCTAAATTCATCAA------------A--TTTGAAATGGGGGCTCAGATTCAAAATGTCA---AAA------ATGT---C-AT-G-ATCAGAATGATAC-T---AATAAAA--CAAGCAAATCA-CTATATTTAT-TTG--C-GGcatta
gi|14 : aCAAGACCTAAAGTCAGCAA-TACT-T-T-GAG--TCT------AAGAATCGGTCTGAAAATATCATTTATA------AC-C---T-AA-A-A-CA-AATAA---------ATTAAG--CAAGTAAATTG-----ATCTAG-TTG--C-AGAAACAAGTAATC---TTT--GA-G-AT-TAgttttgcaaatagttctaa
gi|15 : tgAATCA-CG----TCT-TACTG--TTAATTCTATGTTT--ACAAGG---TCAGCAAAAAATTCAG-T----------TTT-TGAGTCC-TGTGTTCGATCCATTGACTC-GA-A--AG--T----TGAATTTAc
gi|16 : tacCAGGACCTAAATTTAACAA-CC-T-T-A-TA---TCAAAAACACAGACTCAAACTCAAAATCT-----GAA------AT-TTTGT-AA-A-TT
gi|17 : gAGGGCTTAAATTCATCAA--A-C-T-T-AAGTATCTTA-ACTCAGACTCGAACTCGGAATgcatttagtaattctaatagaaatgaa
gi|18 : tcagcaCTAAAATCATCAA-AC-TCT-T-GAG--ACTGAAATTCAGACCCAAACTCAAAAT
gi|19 : gggAGGACCTAGATTCATCAA-TA-T-T-TTGAA--TCTGAGATTTAGACTCAGACTCAAAagtc
gi|2 : CAGGACCTAAATTCATCA-------T-T-GAG--TCTGAGATTGAGACTCAAACTCAAAATGTCA---AAA------AC-T---TCAA-A-TTCA-AATAAAAT-C---TATTTAA--CAAGCAAATTA-CCATATTTAT-TTG--C-ATAAACAAACAGT----TTT--AATG-AT-TATTTAAC-CG-AA-AAAGCTACAGAATCA-CAC--TTCT-TACCC--ATAACTGTATGTTT--AGAGGGT-TTTG-CAAAAATGTAAG-A----------TTT-TGAGT-C-TGAGTCCGATTCTCAGACTA-AA-AC-TA--GT-GATGAATTTAGGCta
gi|20 : tGACTTAAATTCATAAA-AC-C-TAT-GAG--TATCA----CAGACTCAAACTCGGAAT
gi|21 : aacaGAGTTTTAGGCTC-AA-A--TC--TTTGATGAATTTAGGC
gi|3 : agtAAATTCATCAA-GA-T-T-TTGAG--TCTGAGATTTGGACTCGGACTCAAAATTTAA---AAA------AA-A---A-AG-A-TTCA-TATAACAT-T---CTTTTAA---ACTTGAATTG-CTATCTGTAT-TTA--C-ATAAACAGGCAGTC---TTT--AA-A-AT-TATATAAC-AGAAA-ATG-TTATATGATTA-TAT--TTCT-TATCC--ATAATTGTATAATT--ACTTGGT-TTGA-C-AAAATGTAAG-A----------TTT-TGAGT-C-TGAGTTCGATCCTCATACTC-AA-AC-TA--TT-GATGGATTTAGtcagc
gi|4 : CAGGAGCTAAATCCATCAA-TA-T-T-TTGAG--TCTGTGATTAAGACTCAGGCTCAAAATGTCA---AAA------AT-T---T-AA-AATTAA-AATAACAT-C---TTTTAAA--CAAGCAAATTA-GTATATTTAT-TTT--C-AGAAACAAGCAGT----TGT--AATG-AT-TA------------------TACAGCATCG-CAT--TTTT-TACTC--TTAGTTGTATGTTT--ACTGGGT-TTTA-CAAAAATGTAAG-A-----------TT-TGAGT-CTTGAGTTCGATTCTCAGACCC-AACC--TA--TT-GGTGAATTTAGGCat
gi|5 : GGACCTAAATTCAT-----T-T-T-T-GA----TTGAGATTGAGATTCAAACTCAAATGGTCA---AGG------AT--------------------AGCAT-T---TATTAAA--CTAGTAAATTA-CTATATATATATTA--CCAGAAACAAGCAAT----GTT--AATG-AT-TATTAAAC-AG-AA-ATA-TTACAGGGCCA-CAG--TTTT-CACCC--ATTCTTGTATGTTT--ACAGGGC-TTTA-C-ATCTTGTAAG-A----------TTT-TGAGT-C-TAAGTTCCATTCTCAGACTCAAA-A--TA--TT-GATGAATTTAGGcca
gi|6 : AAACTCACCAA-AT-T-A-T--------TGAGATTGAAACTC----TGGAAGTTT-----GAA------AC-T---T-GC-A-TTTA-AA----AT-----TATTTCA--CAAG-AAATTAACAACACTTAA-CTA--C-AAAAACTGTCTAT----TTC--AATG-ATATATT-ATC-AG-AA-ATG-TTAAAAAAACAACAACATTCTGTAAAC---TAA--ATACGTT-------GTT-TTTA-AAAAAGTATTAG-AAAATCGGCAATTC-TAAGT-T-TCAGTTTGGGGTTTAGACTC-AA-AAGTG--TT--ATGAATTTAt
gi|7 : GACTCAAACTGAAAATGTGA---TGATGTGTTAT-T---T-AC-A-TTAA-AAGCACAT-------TTT-A--CAAGAAAAGAA-CAATATTTTC-CTA--C-AAAAACCAACAATAATGTTT---ATG-ATATAGT--ACTAG-AA-AAT-ATAAATAAT-A-CAC--GTTT-TAACT--AAAATCTT-TGCTTAAATAAAATATTT---AAAAATG--GGCA----------TTTCTGAGT-C-TGGGTTC------TAGACTC-AC-A--GGT-TT-TATGAATTTAAGCa
gi|9 : catcaaacttttTAAATTCATCAA-TCAT-T-G-GAG--TCTGATAATTGTATTCAGGGTCAAAGTATTA---ACA------AT-T---G-AA-A-TCCT-TATAACAT-CGTTTAATTAAAACAAACACATTA-CACTATTTAT-TTA--C-GGAAACAAAGAAT----TGA--GGTA-AT-TATTTAAC-GG-AA-CCT-TT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACTCAGATTCAATATTTAATTTTTTTAATTAACATTAATATCTTATAACAAGAAATTGTTTGTTTATTTTTTGTAAAAACAACATATACTGCCAATTAATTTATTCTAAAACCACATATTTGACTTTAAACAACATATTTTTACTATCTTTACATATGAAAACTTAGAGTTTGAGTCAGATTTTAAGTTCAAAAGTTTGATGAATTTAGGCTCAG
Unaligned ( gi|11 ): ACATTTGCTACAAAAAATCAATTTCAGTGATATATTTTCAGAAAATGTATATAAAAAAATATATATTTTAACCTAAATATTTCGCTTTTATAAAGTATTTTAAAGTCGGCAATTCTGAGATTAATTCTGGGTTTTAGAC
Alignments
lowQualScore : 222222222222222 111111111111111111111111111111111 111111 1111 1 111 111 11111 1 111 2222222222 222222
lowQualScore : 888888888888888 0 4 1 1 555555555555555555555555555555555 3 666666 1 44 7 333 3 44 3 0 1 5555 55 3 7 0 6666 4 888 1 1 44 333 5 1 000 1 0 0 11111 0 666 22 6666666666 5 5 5 1 4 4 666666 55
lowQualScore : ............... . . . . ................................. . ...... . .. . ... . .. . . . .... .. . . . .... . ... . . .. ... . . ... . . . ..... . ... .. .......... . . . . . . ...... ..
lowQualScore : 444444444444444 8 4 0 0 333333333333333333333333333333333 8 333333 8 66 8 888 3 66 3 2 2 0000 00 6 3 3 9999 4 222 4 4 66 000 0 4 555 4 1 4 00000 0 999 22 9999999999 0 0 0 7 4 4 222222 66
consensus : NCAGGACCTAAATTCATCAA-TN-T-T-T-GAG--TCTGAGATTNAGACTCAGACTCAAAATNTCA---AAA------AT-T---T-AA-A-TTCA-AATAACAT-C---TATTTAA--CAAGCAAATTA-CNATATTTAT-TTG--C-AGAAACAAGCAAT----TTT--AATG-AT-TATTTAAC-AG-AA-ATN-TTACAGAATC-ACA--NTTCT-TACCC--ATAATTGTATGTTTA--CAGGGT-TTTA-CAAAAATGTAAG----------ATTT-TGAGT-C-TGAGTTCGATTCTCAGACTC-AA-A--TA--TT-GATGAATTTAGGC
Reference ( family-481 ) : NCAGGACCTAAATTCATCAA-TN-T-T-T-GAG--TCTGAGATTNAGACTCAGACTCAAAATNTCA---AAA------AT-T---T-AA-A-TTCA-AATAACAT-C---TATTTAA--CAAGCAAATTA-CNATATTTAT-TTG--C-AGAAACAAGCAAT----TTT--AATG-AT-TATTTAAC-AG-AA-ATN-TTACAGAATC-ACA--NTTCT-TACCC--ATAATTGTATGTTTA--CAGGGT-TTTA-CAAAAATGTAAG----------ATTT-TGAGT-C-TGAGTTCGATTCTCAGACTC-AA-A--TA--TT-GATGAATTTAGGC
gi|1 : CAGGACCTAAATTCATTAA-TG-TGT-T-GAA--TCTAAAACTTGTACTTGAACTAAAAATCTGA---AAT------AT-TG--T-AA-C-TTGC-ATTAAAAA-A---TATTTTA--CAAG-AAAGGA-AAA-ACTTTT-TCGTAC-AAAAACAATTGAT----ATCAAAATGTAT-TATCAAA-----AA-ATA-TCAAAGAATA-AC----CTTT-TAACTAAATAATTTGCTATTAA--AAAAGTATTTA--AAAAATTGGCG----------GTTC-TCAGT-T-TGAGTTTGGGTTTTAAATTC-AA-A---AGTTT-GATGAATTT
gi|10 : cACCTAAATTCATCAA--------------------GATATAGACGCAGTCTCAAAATTTGA---AAA------AA-A---T-AAGA-CTCA-AATTACTTTC---TATTAAA--CAAATAAATTA-CTATATTTAT-TTG--C-AGAAACAAGCAGT----TTT--TATG-AT-TATTTAAC-AA-AATATT-TTACATGATC-ACA--TTTCtagc
gi|12 : TTCATCAAGTT-T-T-T-TAG--TGTAAAACCCAGACTCAAGCTCTAAATCT------AA------AC-T---T-AT-G-T----AATAAAAA-C---AATTTTA--CAAGAAAGTAA-CAATATTTTC-TTG--C-ATAAACTGTCAAT----TTT--AATG--T-TA
gi|13 : tttattCATGGCCTAAATTCATCAA------------A--TTTGAAATGGGGGCTCAGATTCAAAATGTCA---AAA------ATGT---C-AT-G-ATCAGAATGATAC-T---AATAAAA--CAAGCAAATCA-CTATATTTAT-TTG--C-GGcatta
gi|14 : aCAAGACCTAAAGTCAGCAA-TACT-T-T-GAG--TCT------AAGAATCGGTCTGAAAATATCATTTATA------AC-C---T-AA-A-A-CA-AATAA---------ATTAAG--CAAGTAAATTG-----ATCTAG-TTG--C-AGAAACAAGTAATC---TTT--GA-G-AT-TAgttttgcaaatagttctaa
gi|15 : tgAATC-ACG----TCT-TACTG--TTAATTCTATGTTTA--CAAGG---TCAGCAAAAAATTCAG----------TTTT-TGAGTCC-TGTGTTCGATCCATTGACTC-GA-A--AG--T----TGAATTTAc
gi|16 : tacCAGGACCTAAATTTAACAA-CC-T-T-A-TA---TCAAAAACACAGACTCAAACTCAAAATCT-----GAA------AT-TTTGT-AA-A-TT
gi|17 : gAGGGCTTAAATTCATCAA--A-C-T-T-AAGTATCTTA-ACTCAGACTCGAACTCGGAATgcatttagtaattctaatagaaatgaa
gi|18 : tcagcaCTAAAATCATCAA-AC-TCT-T-GAG--ACTGAAATTCAGACCCAAACTCAAAAT
gi|19 : gggAGGACCTAGATTCATCAA-TA-T-T-TTGAA--TCTGAGATTTAGACTCAGACTCAAAagtc
gi|2 : CAGGACCTAAATTCATCA-------T-T-GAG--TCTGAGATTGAGACTCAAACTCAAAATGTCA---AAA------AC-T---TCAA-A-TTCA-AATAAAAT-C---TATTTAA--CAAGCAAATTA-CCATATTTAT-TTG--C-ATAAACAAACAGT----TTT--AATG-AT-TATTTAAC-CG-AA-AAAGCTACAGAATC-ACA--CTTCT-TACCC--ATAACTGTATGTTTA--GAGGGT-TTTG-CAAAAATGTAAG----------ATTT-TGAGT-C-TGAGTCCGATTCTCAGACTA-AA-AC-TA--GT-GATGAATTTAGGCta
gi|20 : tGACTTAAATTCATAAA-AC-C-TAT-GAG--TATCA----CAGACTCAAACTCGGAAT
gi|21 : aacaGAGTTTTAGGCTC-AA-A--TC--TTTGATGAATTTAGGC
gi|3 : agtAAATTCATCAA-GA-T-T-TTGAG--TCTGAGATTTGGACTCGGACTCAAAATTTAA---AAA------AA-A---A-AG-A-TTCA-TATAACAT-T---CTTTTAA---ACTTGAATTG-CTATCTGTAT-TTA--C-ATAAACAGGCAGTC---TTT--AA-A-AT-TATATAAC-AGAAA-ATG-TTATATGATT-ATA--TTTCT-TATCC--ATAATTGTATAATTA--CTTGGT-TTGA-C-AAAATGTAAG----------ATTT-TGAGT-C-TGAGTTCGATCCTCATACTC-AA-AC-TA--TT-GATGGATTTAGtcagc
gi|4 : CAGGAGCTAAATCCATCAA-TA-T-T-TTGAG--TCTGTGATTAAGACTCAGGCTCAAAATGTCA---AAA------AT-T---T-AA-AATTAA-AATAACAT-C---TTTTAAA--CAAGCAAATTA-GTATATTTAT-TTT--C-AGAAACAAGCAGT----TGT--AATG-AT-TA------------------TACAGCATC-GCA--TTTTT-TACTC--TTAGTTGTATGTTTA--CTGGGT-TTTA-CAAAAATGTAAG----------A-TT-TGAGT-CTTGAGTTCGATTCTCAGACCC-AACC--TA--TT-GGTGAATTTAGGCat
gi|5 : GGACCTAAATTCAT-----T-T-T-T-GA----TTGAGATTGAGATTCAAACTCAAATGGTCA---AGG------AT--------------------AGCAT-T---TATTAAA--CTAGTAAATTA-CTATATATATATTA--CCAGAAACAAGCAAT----GTT--AATG-AT-TATTAAAC-AG-AA-ATA-TTACAGGGCC-ACA--GTTTT-CACCC--ATTCTTGTATGTTTA--CAGGGC-TTTA-C-ATCTTGTAAG----------ATTT-TGAGT-C-TAAGTTCCATTCTCAGACTCAAA-A--TA--TT-GATGAATTTAGGcca
gi|6 : AAACTCACCAA-AT-T-A-T--------TGAGATTGAAACTC----TGGAAGTTT-----GAA------AC-T---T-GC-A-TTTA-AA----AT-----TATTTCA--CAAG-AAATTAACAACACTTAA-CTA--C-AAAAACTGTCTAT----TTC--AATG-ATATATT-ATC-AG-AA-ATG-TTAAAAAAACAACAACATTCTGTAAAC---TAA--ATACGTT-------GTT-TTTA-AAAAAGTATTAGAAAATCGGCAATTC-TAAGT-T-TCAGTTTGGGGTTTAGACTC-AA-AAGTG--TT--ATGAATTTAt
gi|7 : GACTCAAACTGAAAATGTGA---TGATGTGTTAT-T---T-AC-A-TTAA-AAGCACAT-------TTTA---CAAGAAAAGAA-CAATATTTTC-CTA--C-AAAAACCAACAATAATGTTT--A-TG-ATATAGT--ACTAG-AA-AAT-ATAAATAAT--ACA--CGTTT-TAACT--AAAATCTT-TGCTTAAATAAAATATTTA---AAAATG--GGC---------ATTTCTGAGT-C-TGGGTTC------TAGACTC-AC-A--GGT-TT-TATGAATTTAAGCa
gi|9 : catcaaacttttTAAATTCATCAA-TCAT-T-G-GAG--TCTGATAATTGTATTCAGGGTCAAAGTATTA---ACA------AT-T---G-AA-A-TCCT-TATAACAT-CGTTTAATTAAAACAAACACATTA-CACTATTTAT-TTA--C-GGAAACAAAGAAT----TGA--GGTA-AT-TATTTAAC-GG-AA-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACTCAGATTCAATATTTAATTTTTTTAATTAACATTAATATCTTATAACAAGAAATTGTTTGTTTATTTTTTGTAAAAACAACATATACTGCCAATTAATTTATTCTAAAACCACATATTTGACTTTAAACAACATATTTTTACTATCTTTACATATGAAAACTTAGAGTTTGAGTCAGATTTTAAGTTCAAAAGTTTGATGAATTTAGGCTCAG
Unaligned ( gi|11 ): ACATTTGCTACAAAAAATCAATTTCAGTGATATATTTTCAGAAAATGTATATAAAAAAATATATATTTTAACCTAAATATTTCGCTTTTATAAAGTATTTTAAAGTCGGCAATTCTGAGATTAATTCTGGGTTTTAGAC
Alignments
lowQualScore : 222222222222222 111111111111111111111111111111111 111111 1111 1 111 111 11111 1 111 2222222222 222222
lowQualScore : 888888888888888 0 4 1 1 555555555555555555555555555555555 3 666666 1 44 7 333 3 44 3 0 1 5555 55 3 7 0 6666 4 888 1 1 44 333 5 1 000 1 0 0 11111 0 666 22 6666666666 5 5 5 1 4 4 666666 55
lowQualScore : ............... . . . . ................................. . ...... . .. . ... . .. . . . .... .. . . . .... . ... . . .. ... . . ... . . . ..... . ... .. .......... . . . . . . ...... ..
lowQualScore : 444444444444444 8 4 0 0 333333333333333333333333333333333 8 333333 8 66 8 888 3 66 3 2 2 0000 00 6 3 3 9999 4 222 4 4 66 000 0 4 555 4 1 4 00000 0 999 22 9999999999 0 0 0 7 4 4 222222 66
consensus : NCAGGACCTAAATTCATCAA-TN-T-T-T-GAG--TCTGAGATTNAGACTCAGACTCAAAATNTCA---AAA------AT-T---T-AA-A-TTCA-AATAACAT-C---TATTTAA--CAAGCAAATTA-CNATATTTAT-TTG--C-AGAAACAAGCAAT----TTT--AATG-AT-TATTTAAC-AG-AA-ATN-TTACAGAATC-ACA--NTTCT-TACCC--ATAATTGTATGTTTA--CAGGGT-TTTA-CAAAAATGTAAG----------ATTT-TGAGT-C-TGAGTTCGATTCTCAGACTC-AA-A--TA--TT-GATGAATTTAGGC
Reference ( family-481 ) : NCAGGACCTAAATTCATCAA-TN-T-T-T-GAG--TCTGAGATTNAGACTCAGACTCAAAATNTCA---AAA------AT-T---T-AA-A-TTCA-AATAACAT-C---TATTTAA--CAAGCAAATTA-CNATATTTAT-TTG--C-AGAAACAAGCAAT----TTT--AATG-AT-TATTTAAC-AG-AA-ATN-TTACAGAATC-ACA--NTTCT-TACCC--ATAATTGTATGTTTA--CAGGGT-TTTA-CAAAAATGTAAG----------ATTT-TGAGT-C-TGAGTTCGATTCTCAGACTC-AA-A--TA--TT-GATGAATTTAGGC
gi|1 : CAGGACCTAAATTCATTAA-TG-TGT-T-GAA--TCTAAAACTTGTACTTGAACTAAAAATCTGA---AAT------AT-TG--T-AA-C-TTGC-ATTAAAAA-A---TATTTTA--CAAG-AAAGGA-AAA-ACTTTT-TCGTAC-AAAAACAATTGAT----ATCAAAATGTAT-TATCAAA-----AA-ATA-TCAAAGAATA-AC----CTTT-TAACTAAATAATTTGCTATTAA--AAAAGTATTTA--AAAAATTGGCG----------GTTC-TCAGT-T-TGAGTTTGGGTTTTAAATTC-AA-A---AGTTT-GATGAATTT
gi|10 : cACCTAAATTCATCAA--------------------GATATAGACGCAGTCTCAAAATTTGA---AAA------AA-A---T-AAGA-CTCA-AATTACTTTC---TATTAAA--CAAATAAATTA-CTATATTTAT-TTG--C-AGAAACAAGCAGT----TTT--TATG-AT-TATTTAAC-AA-AATATT-TTACATGATC-ACA--TTTCtagc
gi|12 : TTCATCAAGTT-T-T-T-TAG--TGTAAAACCCAGACTCAAGCTCTAAATCT------AA------AC-T---T-AT-G-T----AATAAAAA-C---AATTTTA--CAAGAAAGTAA-CAATATTTTC-TTG--C-ATAAACTGTCAAT----TTT--AATG--T-TA
gi|13 : tttattCATGGCCTAAATTCATCAA------------A--TTTGAAATGGGGGCTCAGATTCAAAATGTCA---AAA------ATGT---C-AT-G-ATCAGAATGATAC-T---AATAAAA--CAAGCAAATCA-CTATATTTAT-TTG--C-GGcatta
gi|14 : aCAAGACCTAAAGTCAGCAA-TACT-T-T-GAG--TCT------AAGAATCGGTCTGAAAATATCATTTATA------AC-C---T-AA-A-A-CA-AATAA---------ATTAAG--CAAGTAAATTG-----ATCTAG-TTG--C-AGAAACAAGTAATC---TTT--GA-G-AT-TAgttttgcaaatagttctaa
gi|15 : tgAATC-ACG----TCT-TACTG--TTAATTCTATGTTTA--CAAGG---TCAGCAAAAAATTCAG----------TTTT-TGAGTCC-TGTGTTCGATCCATTGACTC-GA-A--AG--T----TGAATTTAc
gi|16 : tacCAGGACCTAAATTTAACAA-CC-T-T-A-TA---TCAAAAACACAGACTCAAACTCAAAATCT-----GAA------AT-TTTGT-AA-A-TT
gi|17 : gAGGGCTTAAATTCATCAA--A-C-T-T-AAGTATCTTA-ACTCAGACTCGAACTCGGAATgcatttagtaattctaatagaaatgaa
gi|18 : tcagcaCTAAAATCATCAA-AC-TCT-T-GAG--ACTGAAATTCAGACCCAAACTCAAAAT
gi|19 : gggAGGACCTAGATTCATCAA-TA-T-T-TTGAA--TCTGAGATTTAGACTCAGACTCAAAagtc
gi|2 : CAGGACCTAAATTCATCA-------T-T-GAG--TCTGAGATTGAGACTCAAACTCAAAATGTCA---AAA------AC-T---TCAA-A-TTCA-AATAAAAT-C---TATTTAA--CAAGCAAATTA-CCATATTTAT-TTG--C-ATAAACAAACAGT----TTT--AATG-AT-TATTTAAC-CG-AA-AAAGCTACAGAATC-ACA--CTTCT-TACCC--ATAACTGTATGTTTA--GAGGGT-TTTG-CAAAAATGTAAG----------ATTT-TGAGT-C-TGAGTCCGATTCTCAGACTA-AA-AC-TA--GT-GATGAATTTAGGCta
gi|20 : tGACTTAAATTCATAAA-AC-C-TAT-GAG--TATCA----CAGACTCAAACTCGGAAT
gi|21 : aacaGAGTTTTAGGCTC-AA-A--TC--TTTGATGAATTTAGGC
gi|3 : agtAAATTCATCAA-GA-T-T-TTGAG--TCTGAGATTTGGACTCGGACTCAAAATTTAA---AAA------AA-A---A-AG-A-TTCA-TATAACAT-T---CTTTTAA---ACTTGAATTG-CTATCTGTAT-TTA--C-ATAAACAGGCAGTC---TTT--AA-A-AT-TATATAAC-AGAAA-ATG-TTATATGATT-ATA--TTTCT-TATCC--ATAATTGTATAATTA--CTTGGT-TTGA-C-AAAATGTAAG----------ATTT-TGAGT-C-TGAGTTCGATCCTCATACTC-AA-AC-TA--TT-GATGGATTTAGtcagc
gi|4 : CAGGAGCTAAATCCATCAA-TA-T-T-TTGAG--TCTGTGATTAAGACTCAGGCTCAAAATGTCA---AAA------AT-T---T-AA-AATTAA-AATAACAT-C---TTTTAAA--CAAGCAAATTA-GTATATTTAT-TTT--C-AGAAACAAGCAGT----TGT--AATG-AT-TA------------------TACAGCATC-GCA--TTTTT-TACTC--TTAGTTGTATGTTTA--CTGGGT-TTTA-CAAAAATGTAAG----------A-TT-TGAGT-CTTGAGTTCGATTCTCAGACCC-AACC--TA--TT-GGTGAATTTAGGCat
gi|5 : GGACCTAAATTCAT-----T-T-T-T-GA----TTGAGATTGAGATTCAAACTCAAATGGTCA---AGG------AT--------------------AGCAT-T---TATTAAA--CTAGTAAATTA-CTATATATATATTA--CCAGAAACAAGCAAT----GTT--AATG-AT-TATTAAAC-AG-AA-ATA-TTACAGGGCC-ACA--GTTTT-CACCC--ATTCTTGTATGTTTA--CAGGGC-TTTA-C-ATCTTGTAAG----------ATTT-TGAGT-C-TAAGTTCCATTCTCAGACTCAAA-A--TA--TT-GATGAATTTAGGcca
gi|6 : AAACTCACCAA-AT-T-A-T--------TGAGATTGAAACTC----TGGAAGTTT-----GAA------AC-T---T-GC-A-TTTA-AA----AT-----TATTTCA--CAAG-AAATTAACAACACTTAA-CTA--C-AAAAACTGTCTAT----TTC--AATG-ATATATT-ATC-AG-AA-ATG-TTAAAAAAACAACAACATTCTGTAAAC---TAA--ATACGTT-------GTT-TTTA-AAAAAGTATTAGAAAATCGGCAATTC-TAAGT-T-TCAGTTTGGGGTTTAGACTC-AA-AAGTG--TT--ATGAATTTAt
gi|7 : GACTCAAACTGAAAATGTGA---TGATGTGTTAT-T---T-AC-A-TTAA-AAGCACAT-------TTTA---CAAGAAAAGAA-CAATATTTTC-CTA--C-AAAAACCAACAATAATGTTT--A-TG-ATATAGT--ACTAG-AA-AAT-ATAAATAAT--ACA--CGTTT-TAACT--AAAATCTT-TGCTTAAATAAAATATTTA---AAAATG--GGC---------ATTTCTGAGT-C-TGGGTTC------TAGACTC-AC-A--GGT-TT-TATGAATTTAAGCa
gi|9 : catcaaacttttTAAATTCATCAA-TCAT-T-G-GAG--TCTGATAATTGTATTCAGGGTCAAAGTATTA---ACA------AT-T---G-AA-A-TCCT-TATAACAT-CGTTTAATTAAAACAAACACATTA-CACTATTTAT-TTA--C-GGAAACAAAGAAT----TGA--GGTA-AT-TATTTAAC-GG-AA-
blockSeqs : GTTTTTTAG G T T GATGATGTGTTATTTACATTAA C CGTTT A AA T ACA A . C G AATG . . A T AGA T AAG C T CA ACA G C T C AATAA A GCA TC AAAATCGGCA C C T T A C AGTG TG
blockSeqs : TACTTTGAG A C C CAAAAATGTCATGATCAG A TCT T . A CT . . . T C . . A T TAG . TT C G C T . C A G CAA . CA TA C . . . T . . CTA G
blockSeqs : ACTTAAGTA A G G CATTTATAACCTAAAACA T CA A . C CA . . . G C . . . T AA . TG T T C C . T A G GAG . CA TA . . . . G . . CTA G
blockSeqs : ACTCTTGAG A A A GAAAAAAATAAGACTCA A TA A . T CT . . . A . . . . A CG . TA C G C T . C T G CTT . AA TA . . . . T . . GGT G
blockSeqs : TATTTTGAA A C C CAAAAACTTCAAATTCA C CT T . C CC . . . G . . . . T AG . TG C G T T . C A G CTG . C TA . . . . T . . AG G
blockSeqs : ACCTATGAG G C G CAAAAATTTAAAATTAA C TC T . T CT . . . G . . . . . AG . AT A A C G . A A A CAG . C TT . . . . T . . TC T
blockSeqs : GATTTTGAG G C T AAAAAAAAAAGATTCA C CT A . C GT . . . G . . . . . GG . . A T C C . A . T . . . . . . . . G . . TA .
blockSeqs : TATTTTGAG G T G TAACAATTGAAATCCT C TT A . T CT . . . T . . . . . . . . . . . . TA .
blockSeqs : TCATTGGAG G G G GAAACTTGCATTTA C T T . A CA . . . A . . . .
blockSeqs : CCTTATA G C T AAACTTATGT . . T . C CA . . . A . . . .
blockSeqs : TTTTGA G T G CAAGGAT . . T . . . . . .
blockSeqs : TTGAG T A A
blockSeqs : ATTAT . G
blockSeqs : A . G
blockSeqs : . . T
blockSeqCons : ** ** AG** T** A** CA* TG****
originalCons : NCAGGACCTAAATTCATCAA-TN-T-T-T-GAG--TCTGAGATTNAGACTCAGACTCAAAATNTCA---AAA------AT-T---T-AA-A-TTCA-AATAACAT-C---TATTTAA--CAAGCAAATTA-CNATATTTAT-TTG--C-AGAAACAAGCAAT----TTT--AATG-AT-TATTTAAC-AG-AA-ATN-TTACAGAATC-ACA--NTTCT-TACCC--ATAATTGTATGTTTA--CAGGGT-TTTA-CAAAAATGTAAG----------ATTT-TGAGT-C-TGAGTTCGATTCTCAGACTC-AA-A--TA--TT-GATGAATTTAGGC
finalCons : NCAGGACCTAAATTCATCAA-TN-T-T-T-GAG--TCTGAGATTNAGACTCAGACTCAAAATNTCA---AAA------AT-T---T-AA-A-TTCA-AATAACAT-C---TATTTAA--CAAGCAAATTA-CNATATTTAT-TTG--C-AGAAACAAGCAAT----TTT--AATG-AT-TATTTAACAG--AA-ATN-TTACAGAATC-ACAT--TTCT-TACCCA--TAATTGTATGTTTA--CAGGGT-TTTACA-AAAATGTAAG----------ATTT-TGAGT-C-TGAGTTCGATTCTCAGACTC-AA-ATG----TT-GATGAATTTAGGC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACTCAGATTCAATATTTAATTTTTTTAATTAACATTAATATCTTATAACAAGAAATTGTTTGTTTATTTTTTGTAAAAACAACATATACTGCCAATTAATTTATTCTAAAACCACATATTTGACTTTAAACAACATATTTTTACTATCTTTACATATGAAAACTTAGAGTTTGAGTCAGATTTTAAGTTCAAAAGTTTGATGAATTTAGGCTCAG
Unaligned ( gi|11 ): ACATTTGCTACAAAAAATCAATTTCAGTGATATATTTTCAGAAAATGTATATAAAAAAATATATATTTTAACCTAAATATTTCGCTTTTATAAAGTATTTTAAAGTCGGCAATTCTGAGATTAATTCTGGGTTTTAGAC
Alignments
lowQualScore : 222222222222222 222222222222222222222222222222222222 1111111 1 1111 11111111 1111 22222222222 111 2222222222 22222
lowQualScore : 888888888888888 0 4 1 1 111111111111111111111111111111111111 3 4 4444444 1 44 0 444 3 777777 3 0 4 0 3333 44 999 6 0 66666666 4 77 1 1 4 8888 3 0 6666 22 33333333333 222 55 3333333333 4 4 4 0 0 4 4 11111 8
lowQualScore : ............... . . . . .................................... . . ....... . .. . ... . ...... . . . . .... .. ... . . ........ . .. . . . .... . . .... .. ........... ... .. .......... . . . . . . . ..... .
lowQualScore : 444444444444444 8 4 0 0 222222222222222222222222222222222222 1 0 2222222 0 22 3 111 1 777777 1 7 4 1 8888 66 222 7 9 77777777 0 00 9 9 0 5555 9 1 1111 77 22222222222 999 44 9999999999 4 4 4 6 5 0 0 66666 0
consensus : NCAGGACCTAAATTCATCAA-TN-T-T-T-GAG--TCTGAGATTNAGACTCAGACTCAAAATNTCA---AAA------AT-T---T-A---A-A-TTCA-AAT-AACAT-C---TATTTAA--CAAGCAAATTA-CNATATTTAT-TT---G--C-AGAAACAAGCAAT----TTT--AATG---AT-TATTTAAC-AG-AA-ATA-TTACAGAAT-C----ACATTTCTTACCC---ATAATTGTATGTTTA--CAGGGT---TTTA-CAAAAATGTAAG----------ATTT-TGAGT-C-TGAGTTCGATTCTCAGACTC-AA-A--TG-TT-GATGAATTTAGGC
Reference ( family-481 ) : NCAGGACCTAAATTCATCAA-TN-T-T-T-GAG--TCTGAGATTNAGACTCAGACTCAAAATNTCA---AAA------AT-T---T-A---A-A-TTCA-AAT-AACAT-C---TATTTAA--CAAGCAAATTA-CNATATTTAT-TT---G--C-AGAAACAAGCAAT----TTT--AATG---AT-TATTTAAC-AG-AA-ATN-TTACAGAAT-C----ACATTTCTTACCC---ATAATTGTATGTTTA--CAGGGT---TTTA-CAAAAATGTAAG----------ATTT-TGAGT-C-TGAGTTCGATTCTCAGACTC-AA-A--TG-TT-GATGAATTTAGGC
gi|1 : CAGGACCTAAATTCATTAA-TG-TGT-T-GAA--TCTAAAACTTGTACTTGAACTAAAAATCTGA---AAT------AT-TG--T-A---A-C-TTGC-ATT-AAAAA-A---TATTTTA--CAAG-AAAGGA-AAA-ACTTTT-TC---GTAC-AAAAACAATTGAT----ATCAAAATGT--AT-TATCAAA-----AA-ATA-TCAAAGAAT-A----ACCTT--TTAACTAA-ATAATTTGCTATTAA--AAAAGTA--TTTA--AAAAATTGGCG----------GTTC-TCAGT-T-TGAGTTTGGGTTTTAAATTC-AA-A--AGTTT-GATGAATTT
gi|10 : cACCTAAATTCATCAA--------------------GATATAGACGCAGTCTCAAAATTTGA---AAA------AA-A---T-A---AGA-CTCA-AAT-TACTTTC---TATTAAA--CAAATAAATTA-CTATATTTAT-TT---G--C-AGAAACAAGCAGT----TTT--TATG---AT-TATTTAAC-AA-AATATT-TTACATGAT-C----ACATTTCtagc
gi|12 : TTCATCAAGTT-T-T-T-TAG--TGTAAAACCCAGACTCAAGCTCTAAATCT------AA------AC-T---T-A---T-G-T----AAT-AAAAA-C---AATTTTA--CAAGAAAGTAA-CAATATTTTC-TT---G--C-ATAAACTGTCAAT----TTT--AATG----T-TA
gi|13 : tttattCATGGCCTAAATTCATCAA------------A--TTTGAAATGGGGGCTCAGATTCAAAATGTCA---AAA------ATGT---C-A---T-G-ATCAGAAT-GATAC-T---AATAAAA--CAAGCAAATCA-CTATATTTAT-TT---G--C-GGcatta
gi|14 : aCAAGACCTAAAGTCAGCAA-TACT-T-T-GAG--TCT------AAGAATCGGTCTGAAAATATCATTTATA------AC-C---T-A---A-A-A-CA-AAT-AA---------ATTAAG--CAAGTAAATTG-----ATCTAG-TT---G--C-AGAAACAAGTAATC---TTT--GA-G---AT-TAgttttgcaaatagttctaa
gi|15 : tgAAT-C----ACGT--CTTACTG---TTAATTCTATGTTTA--CAAGG-----TCAGCAAAAAATTCAG----------TTTT-TGAGTCC-TGTGTTCGATCCATTGACTC-GA-A--AG-T----TGAATTTAc
gi|16 : tacCAGGACCTAAATTTAACAA-CC-T-T-A-TA---TCAAAAACACAGACTCAAACTCAAAATCT-----GAA------AT-TTTGT-A---A-A-TT
gi|17 : gAGGGCTTAAATTCATCAA--A-C-T-T-AAGTATCTTA-ACTCAGACTCGAACTCGGAATgcatttagtaattctaatagaaatgaa
gi|18 : tcagcaCTAAAATCATCAA-AC-TCT-T-GAG--ACTGAAATTCAGACCCAAACTCAAAAT
gi|19 : gggAGGACCTAGATTCATCAA-TA-T-T-TTGAA--TCTGAGATTTAGACTCAGACTCAAAagtc
gi|2 : CAGGACCTAAATTCATCA-------T-T-GAG--TCTGAGATTGAGACTCAAACTCAAAATGTCA---AAA------AC-T---TCA---A-A-TTCA-AAT-AAAAT-C---TATTTAA--CAAGCAAATTA-CCATATTTAT-TT---G--C-ATAAACAAACAGT----TTT--AATG---AT-TATTTAAC-CG-AA-AAAGCTACAGAAT-C----ACACTTCTTACCC---ATAACTGTATGTTTA--GAGGGT---TTTG-CAAAAATGTAAG----------ATTT-TGAGT-C-TGAGTCCGATTCTCAGACTA-AA-AC-TA-GT-GATGAATTTAGGCta
gi|20 : tGACTTAAATTCATAAA-AC-C-TAT-GAG--TATCA----CAGACTCAAACTCGGAAT
gi|21 : aacaGAGTTTTAGGCTC-AA-A--TC-TTTGATGAATTTAGGC
gi|3 : agtAAATTCATCAA-GA-T-T-TTGAG--TCTGAGATTTGGACTCGGACTCAAAATTTAA---AAA------AA-A---A-A---G-A-TTCA-TAT-AACAT-T---CTTTTAA---ACTTGAATTG-CTATCTGTAT-TT---A--C-ATAAACAGGCAGTC---TTT--AA-A---AT-TATATAAC-AGAAA-ATG-TTATATGAT-T----ATATTTCTTATCC---ATAATTGTATAATTA--CTTGGT---TTGA-C-AAAATGTAAG----------ATTT-TGAGT-C-TGAGTTCGATCCTCATACTC-AA-AC-TA-TT-GATGGATTTAGtcagc
gi|4 : CAGGAGCTAAATCCATCAA-TA-T-T-TTGAG--TCTGTGATTAAGACTCAGGCTCAAAATGTCA---AAA------AT-T---T-A---A-AATTAA-AAT-AACAT-C---TTTTAAA--CAAGCAAATTA-GTATATTTAT-TT---T--C-AGAAACAAGCAGT----TGT--AATG---AT-TA------------------TACAGCAT-C----GCATTTTTTACTC---TTAGTTGTATGTTTA--CTGGGT---TTTA-CAAAAATGTAAG----------A-TT-TGAGT-CTTGAGTTCGATTCTCAGACCC-AACC--TA-TT-GGTGAATTTAGGCat
gi|5 : GGACCTAAATTCAT-----T-T-T-T-GA----TTGAGATTGAGATTCAAACTCAAATGGTCA---AGG------AT------------------------AGCAT-T---TATTAAA--CTAGTAAATTA-CTATATATATATT---A--CCAGAAACAAGCAAT----GTT--AATG---AT-TATTAAAC-AG-AA-ATA-TTACAGGGC-C----ACAGTTTTCACCC---ATTCTTGTATGTTTA--CAGGGC---TTTA-C-ATCTTGTAAG----------ATTT-TGAGT-C-TAAGTTCCATTCTCAGACTCAAA-A--TA-TT-GATGAATTTAGGcca
gi|6 : AAACTCACCAA-AT-T-A-T--------TGAGATTGAAACTC----TGGAAGTTT-----GAA------AC-T---T-G---C-A-TTTA-AA-----AT-----TATTTCA--CAAG-AAATTAACAACACTTAA-CT---A--C-AAAAACTGTCTAT----TTC--AATG---ATATATT-ATC-AG-AA-ATG-TTAAAAAAA-CAACAACATTCTGTAAAC----TAA--ATACGTT-------GTT---TTTA-AAAAAGTATTAGAAAATCGGCAATTC-TAAGT-T-TCAGTTTGGGGTTTAGACTC-AA-AAGTG-TT--ATGAATTTAt
gi|7 : GACTCAAACTGAAAATGTGA---TGATGTGTTAT-T---T-A---C-A-TTAA-AAG-CACAT-------TTTA---CAAGAAAAGAA-CAATATTTTC-CT---A--C-AAAAACCAACAATAATGTTT--A-TG---ATATAGT--ACTAG-AA-AAT-ATAAATAATAC----ACGTTT--TAACT---AAAATCTT-TGCTTAAATAAAATA--TTTA---AAAATG--GGC---------ATTTCTGAGT-C-TGGGTTC------TAGACTC-AC-A--GGTTT-TATGAATTTAAGCa
gi|8 : catcaaacttttACTCAGATTCAATATTT-------A------AT-T---T-TTTTA-A-TTAA-CATTAATAT-C---T-TATAA--CAAG-AAATTG-TT-TGTTTAT-TTTTTG--T-AAAAACAA-CA------TAT--ACTGCCAAT-TAATT-----------TA-TTCTAAAAC-C----ACATATTTGACTTTAAACAAC-ATATTTTTA--C----TATCTTTA-CATA--TG-AAA----------ACTT-AGAGT-T-TGAGTCAGATTTTAAG-TTC-AA-A--AG-TTTGATGAATTTAGGC
gi|9 : TAAATTCATCAA-TCAT-T-G-GAG--TCTGATAATTGTATTCAGGGTCAAAGTATTA---ACA------AT-T---G-A---A-A-TCCT-TAT-AACAT-CGTTTAATTAAAACAAACACATTA-CACTATTTAT-TT---A--C-GGAAACAAAGAAT----TGA--GGTA---AT-TATTTAAC-GG-AA-tcag
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): ACATTTGCTACAAAAAATCAATTTCAGTGATATATTTTCAGAAAATGTATATAAAAAAATATATATTTTAACCTAAATATTTCGCTTTTATAAAGTATTTTAAAGTCGGCAATTCTGAGATTAATTCTGGGTTTTAGAC